AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0120120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120120 MtrunA17_Chr1g0178361 98.689 305 4 0 1 305 1 305 0.0 617
Msa0120120 MtrunA17_Chr4g0017941 69.231 247 74 1 59 305 68 312 1.18e-124 358
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120120 AT5G06130.2 68.647 303 76 3 6 305 29 315 9.09e-144 407
Msa0120120 AT5G06130.1 77.155 232 52 1 74 305 1 231 1.40e-129 368
Msa0120120 AT5G61670.2 69.880 249 73 1 57 305 61 307 5.71e-125 359
Msa0120120 AT5G61670.1 69.880 249 73 1 57 305 61 307 5.71e-125 359

Find 76 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAAAATCTTTCTTCTTA+TGG 0.155230 1_3:+44763516 Msa0120120:CDS
ATATCTGCAATAATTGTATT+TGG 0.197063 1_3:+44764434 Msa0120120:CDS
ATGGCAGCTGGAGCTGAAAT+TGG 0.211679 1_3:+44765403 Msa0120120:intron
GGAATAGATGATGGAATTTC+CGG 0.218058 1_3:-44764042 None:intergenic
TTTGAACATTAATCCGATTT+CGG 0.296746 1_3:+44765899 Msa0120120:CDS
TTTCCAGCACCAGAGCAATT+TGG 0.301546 1_3:-44765972 None:intergenic
TTTAAAAGGGGCAAAGAAAA+TGG 0.310012 1_3:-44763214 None:intergenic
AATTATATTCAGTGTCAATA+TGG 0.322985 1_3:-44766344 None:intergenic
TGCATTTGCCTTTGCAACTA+AGG 0.340206 1_3:+44765465 Msa0120120:CDS
CCCGAAAAGGATGCGACAAT+TGG 0.359416 1_3:-44765628 None:intergenic
AGAGAAAGTATTCATTGGTT+TGG 0.367720 1_3:-44763148 None:intergenic
TAACTTCGGTGTGATTTCAT+TGG 0.379581 1_3:-44763307 None:intergenic
TGTCCAACCTGCCTTTGCAC+TGG 0.394247 1_3:+44766101 Msa0120120:CDS
ATTAATCCGATTTCGGCATC+TGG 0.402233 1_3:+44765906 Msa0120120:CDS
GAAGGAGAGAAAGTATTCAT+TGG 0.405939 1_3:-44763153 None:intergenic
TTGAAGAAGCTCTATCTAAC+AGG 0.406814 1_3:+44764401 Msa0120120:CDS
CTATTGTCTGTTCTGTTGTT+CGG 0.410489 1_3:+44763058 Msa0120120:five_prime_UTR
ACAAAATCCTGAACCGTCTC+TGG 0.410773 1_3:-44763448 None:intergenic
TGAAGGGCCAGAGACGGTTC+AGG 0.422644 1_3:+44763441 Msa0120120:CDS
TTTGGACACCTTGTCGTTGT+AGG 0.425866 1_3:-44765954 None:intergenic
CTCACCACATGAGGAAGAAA+AGG 0.428649 1_3:-44764063 None:intergenic
ATGGAACTAGGACAGAATTC+TGG 0.437091 1_3:-44766325 None:intergenic
GAAGTACCAGATGCCGAAAT+CGG 0.441052 1_3:-44765912 None:intergenic
TTCAGTACTGATGTTAATTG+AGG 0.445259 1_3:+44765669 Msa0120120:CDS
TGTCCAAATTGCTCTGGTGC+TGG 0.448257 1_3:+44765969 Msa0120120:CDS
TAGAGCTTCTTCAAAGTGTT+GGG 0.450361 1_3:-44764392 None:intergenic
CTGGAGCTGAAATTGGGTAT+AGG 0.452466 1_3:+44765410 Msa0120120:CDS
AGTCAAATGGATCAATTCTC+AGG 0.456133 1_3:-44766148 None:intergenic
AATCTTTCTTCTTATGGAAG+AGG 0.457917 1_3:+44763522 Msa0120120:CDS
TGCTCTTCTCCACAGGATGC+AGG 0.457995 1_3:+44763282 Msa0120120:CDS
TGCAAGTATTGCCTTGGAAC+TGG 0.458275 1_3:+44765724 Msa0120120:CDS
TACTTCTGTTAGACCCCTGC+AGG 0.461988 1_3:+44765929 Msa0120120:CDS
CATGTAAAGAATTAGTCAAA+TGG 0.467029 1_3:-44766161 None:intergenic
ATAGAGCTTCTTCAAAGTGT+TGG 0.477201 1_3:-44764393 None:intergenic
CTGCAATAATTGTATTTGGC+GGG 0.477772 1_3:+44764438 Msa0120120:CDS
CAGGTTACTTGGCTTGCGCT+CGG 0.481171 1_3:+44765856 Msa0120120:intron
GTCCAACCTGCCTTTGCACT+GGG 0.482552 1_3:+44766102 Msa0120120:CDS
CCGAAAAGGATGCGACAATT+GGG 0.484141 1_3:-44765627 None:intergenic
GCCAACTGCTCCACCCGAAA+AGG 0.487934 1_3:-44765641 None:intergenic
TGGCAGCTGGAGCTGAAATT+GGG 0.494726 1_3:+44765404 Msa0120120:intron
TATAGGTGGCACGTCATATG+AGG 0.498079 1_3:+44765427 Msa0120120:CDS
GGAAGAAAAGGAATAGATGA+TGG 0.501221 1_3:-44764051 None:intergenic
TAGCTATGAAAGGTGGAAAG+TGG 0.506702 1_3:-44763091 None:intergenic
TTGTCGTTGTAGGAACCTGC+AGG 0.508146 1_3:-44765944 None:intergenic
AGCTATGAAAGGTGGAAAGT+GGG 0.516086 1_3:-44763090 None:intergenic
ACAAGGTGCAAGTATTGCCT+TGG 0.523158 1_3:+44765718 Msa0120120:CDS
TAAGGTAGAATTGTGGAGGA+AGG 0.527472 1_3:-44763171 None:intergenic
TGCGCTCGGTGTTCCACAAG+TGG 0.528281 1_3:+44765870 Msa0120120:CDS
AATTGCGTGCTCTTCTCCAC+AGG 0.533626 1_3:+44763275 Msa0120120:CDS
ACAAGGTGTCCAAATTGCTC+TGG 0.537901 1_3:+44765963 Msa0120120:CDS
GTTCAAACATACACCACTTG+TGG 0.537962 1_3:-44765883 None:intergenic
AGAACAGACAATAGCAGCTA+AGG 0.549190 1_3:-44763049 None:intergenic
CTTCATCCCAGTGCAAAGGC+AGG 0.549940 1_3:-44766108 None:intergenic
TGGCGGGCTTATTGCACCAA+CGG 0.550362 1_3:+44764454 Msa0120120:CDS
AAATTGCTCTGGTGCTGGAA+AGG 0.553692 1_3:+44765974 Msa0120120:CDS
GGAAGATGCAAATGAGATGC+CGG 0.556353 1_3:+44764023 Msa0120120:CDS
TCTGCAATAATTGTATTTGG+CGG 0.560108 1_3:+44764437 Msa0120120:CDS
CATCATTGAAGGGCCAGAGA+CGG 0.562395 1_3:+44763435 Msa0120120:CDS
GGAGATTGCGTGTGCAGCAG+CGG 0.563072 1_3:+44763962 Msa0120120:CDS
ATAGCATACCTTAGTTGCAA+AGG 0.566228 1_3:-44765473 None:intergenic
ATCCCAGTGCAAAGGCAGGT+TGG 0.571963 1_3:-44766104 None:intergenic
TGTCGTTGTAGGAACCTGCA+GGG 0.577519 1_3:-44765943 None:intergenic
AACTAGGACAGAATTCTGGC+AGG 0.584086 1_3:-44766321 None:intergenic
TTCAGTGTCAATATGGAACT+AGG 0.585120 1_3:-44766337 None:intergenic
AGGGTAAGGTAGAATTGTGG+AGG 0.586801 1_3:-44763175 None:intergenic
TGAAGGGTAAGGTAGAATTG+TGG 0.598098 1_3:-44763178 None:intergenic
GAGCTGAAATTGGGTATAGG+TGG 0.607211 1_3:+44765413 Msa0120120:CDS
CCTTTGCACTGGGATGAAGA+TGG 0.608589 1_3:+44766112 Msa0120120:CDS
TCATTGGAGCCTGCATCCTG+TGG 0.609087 1_3:-44763291 None:intergenic
CCATCTTCATCCCAGTGCAA+AGG 0.623251 1_3:-44766112 None:intergenic
TTGGAAGTAGCTATGAAAGG+TGG 0.623849 1_3:-44763098 None:intergenic
TTGAGCAACAAGAGAAAACA+AGG 0.624269 1_3:+44765701 Msa0120120:CDS
GTAGAAACATACCAGTTCCA+AGG 0.632023 1_3:-44765735 None:intergenic
TCATTGGAAGTAGCTATGAA+AGG 0.637862 1_3:-44763101 None:intergenic
GTCGTTGTAGGAACCTGCAG+GGG 0.684640 1_3:-44765942 None:intergenic
TGCAGGTTCCTACAACGACA+AGG 0.684689 1_3:+44765946 Msa0120120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAAAAATATACTTTTTTA+TGG - chr1_3:44762999-44763018 None:intergenic 10.0%
!!! TTTTTAATAACTTATGAAAA+CGG - chr1_3:44763814-44763833 None:intergenic 10.0%
!!! TAAATTAATACTAAATTTTG+AGG - chr1_3:44766243-44766262 None:intergenic 10.0%
!! AAACAAAATAAAAATGAATA+AGG + chr1_3:44766268-44766287 Msa0120120:three_prime_UTR 10.0%
!! CAAAAAAAAAAAACTAACTT+CGG - chr1_3:44763324-44763343 None:intergenic 15.0%
!!! AGTTTTTTTTTTTTGCTTAT+TGG + chr1_3:44763329-44763348 Msa0120120:intron 15.0%
!!! GTTTTTTTTTTTTGCTTATT+GGG + chr1_3:44763330-44763349 Msa0120120:intron 15.0%
!!! CTTTTATATAAAATCCAAAA+AGG - chr1_3:44764798-44764817 None:intergenic 15.0%
!!! CTTTTTGGATTTTATATAAA+AGG + chr1_3:44764796-44764815 Msa0120120:intron 15.0%
!!! AATTCTGACAATTTAAATTT+TGG + chr1_3:44764920-44764939 Msa0120120:intron 15.0%
!!! ATTCTGACAATTTAAATTTT+GGG + chr1_3:44764921-44764940 Msa0120120:intron 15.0%
!!! ATATTGAATCGTTATTTTAA+TGG + chr1_3:44765384-44765403 Msa0120120:intron 15.0%
!! ATAAAAATGAATAAGGAATT+AGG + chr1_3:44766275-44766294 Msa0120120:three_prime_UTR 15.0%
!! TTGACTTAGAAAAAGAAAAT+TGG - chr1_3:44763251-44763270 None:intergenic 20.0%
!!! AATTTTCTTTTTCTAAGTCA+AGG + chr1_3:44763250-44763269 Msa0120120:CDS 20.0%
!! CAATAAAATCTTTCTTCTTA+TGG + chr1_3:44763516-44763535 Msa0120120:CDS 20.0%
!!! GTCAATTTTCATTCATATTA+TGG + chr1_3:44763578-44763597 Msa0120120:intron 20.0%
!! TAGTTTAAATAAGACACTTA+AGG + chr1_3:44764187-44764206 Msa0120120:intron 20.0%
!! ATATCTGCAATAATTGTATT+TGG + chr1_3:44764434-44764453 Msa0120120:CDS 20.0%
!! AAAAAACAATAAATTACCGT+TGG - chr1_3:44764473-44764492 None:intergenic 20.0%
!! TATTTGGCATAGAATAAAAA+AGG - chr1_3:44764496-44764515 None:intergenic 20.0%
!!! TGTAATTTAGGTTGATTATT+TGG - chr1_3:44764512-44764531 None:intergenic 20.0%
!!! TTCTGACAATTTAAATTTTG+GGG + chr1_3:44764922-44764941 Msa0120120:intron 20.0%
!! TAACGATTCAATATTTGAAA+TGG - chr1_3:44765378-44765397 None:intergenic 20.0%
!! ATTTCTTTCTTTCTGATAAA+TGG - chr1_3:44765529-44765548 None:intergenic 20.0%
!!! AAATTTGTAATTTTATGGAC+AGG + chr1_3:44765837-44765856 Msa0120120:intron 20.0%
!! AATTAAACAGTTGCATATAT+CGG - chr1_3:44766019-44766038 None:intergenic 20.0%
!!! ATTAATACTAAATTTTGAGG+TGG - chr1_3:44766240-44766259 None:intergenic 20.0%
!! AATTATATTCAGTGTCAATA+TGG - chr1_3:44766347-44766366 None:intergenic 20.0%
! CTTAGAAAAAGAAAATTGGT+TGG - chr1_3:44763247-44763266 None:intergenic 25.0%
! CAAAATTTAAACTTTGCAAC+TGG + chr1_3:44763369-44763388 Msa0120120:intron 25.0%
! TGACACTATTTAATGAAGTA+TGG - chr1_3:44763562-44763581 None:intergenic 25.0%
!! GTTTTCATGTAACTTATAAG+CGG + chr1_3:44763713-44763732 Msa0120120:intron 25.0%
!!! AACTTGCTATAAGATATAAG+CGG - chr1_3:44763893-44763912 None:intergenic 25.0%
! CCAATAGTTTAATCAAAACA+AGG - chr1_3:44764097-44764116 None:intergenic 25.0%
!!! CCTTGTTTTGATTAAACTAT+TGG + chr1_3:44764094-44764113 Msa0120120:intron 25.0%
!! CATAAAAGTATGAGTTAACA+TGG - chr1_3:44764690-44764709 None:intergenic 25.0%
!! CATGTTAACTCATACTTTTA+TGG + chr1_3:44764688-44764707 Msa0120120:intron 25.0%
! AATCAGTAGCAAACTATAAT+AGG - chr1_3:44764723-44764742 None:intergenic 25.0%
! ACTTTCAAATTAACTTCAGT+GGG - chr1_3:44764764-44764783 None:intergenic 25.0%
!! TCTTCTCATTTAAGATGAAA+AGG - chr1_3:44764870-44764889 None:intergenic 25.0%
! TTCATCTTAAATGAGAAGAA+TGG + chr1_3:44764871-44764890 Msa0120120:intron 25.0%
! TAAATGAGAAGAATGGATAA+AGG + chr1_3:44764878-44764897 Msa0120120:intron 25.0%
! ATATGTGCTAACTTGAATTT+AGG + chr1_3:44764967-44764986 Msa0120120:intron 25.0%
! GTTATAGCAAATAGCATAAA+GGG - chr1_3:44765044-44765063 None:intergenic 25.0%
! AGTTATAGCAAATAGCATAA+AGG - chr1_3:44765045-44765064 None:intergenic 25.0%
! ACTAGTAGTACATAAAGTAT+AGG + chr1_3:44765062-44765081 Msa0120120:intron 25.0%
!! CAATTCTAGAAAGAATAGAA+AGG - chr1_3:44765806-44765825 None:intergenic 25.0%
! TTTGAACATTAATCCGATTT+CGG + chr1_3:44765899-44765918 Msa0120120:CDS 25.0%
!!! GTCATATGTGTTTTTTGTTT+AGG + chr1_3:44766073-44766092 Msa0120120:intron 25.0%
! CATGTAAAGAATTAGTCAAA+TGG - chr1_3:44766164-44766183 None:intergenic 25.0%
! TTTTGAGCTCATAGAATCAT+TGG - chr1_3:44763120-44763139 None:intergenic 30.0%
!! AGAGAAAGTATTCATTGGTT+TGG - chr1_3:44763151-44763170 None:intergenic 30.0%
TTTAAAAGGGGCAAAGAAAA+TGG - chr1_3:44763217-44763236 None:intergenic 30.0%
! ATTTTCTTTGCCCCTTTTAA+AGG + chr1_3:44763216-44763235 Msa0120120:CDS 30.0%
!!! GTTGGTTTTACCTTTAAAAG+GGG - chr1_3:44763229-44763248 None:intergenic 30.0%
!!! GGTTGGTTTTACCTTTAAAA+GGG - chr1_3:44763230-44763249 None:intergenic 30.0%
!!! TGGTTGGTTTTACCTTTAAA+AGG - chr1_3:44763231-44763250 None:intergenic 30.0%
AATCTTTCTTCTTATGGAAG+AGG + chr1_3:44763522-44763541 Msa0120120:CDS 30.0%
!! CTTATTTTCATAAGTACTCC+AGG - chr1_3:44763753-44763772 None:intergenic 30.0%
TGACTAATGAGAAATGAGTA+TGG + chr1_3:44763932-44763951 Msa0120120:intron 30.0%
AGTACTTGAAGATATTGGTA+TGG - chr1_3:44764139-44764158 None:intergenic 30.0%
TCTTCAGTACTTGAAGATAT+TGG - chr1_3:44764144-44764163 None:intergenic 30.0%
TTCGATAGATGAGAAACAAA+AGG - chr1_3:44764294-44764313 None:intergenic 30.0%
TCTGCAATAATTGTATTTGG+CGG + chr1_3:44764437-44764456 Msa0120120:CDS 30.0%
ATTGTCTCTATTTGTCTCAT+AGG + chr1_3:44764557-44764576 Msa0120120:intron 30.0%
TCCTTTGTTACTCTCTATAA+CGG + chr1_3:44764589-44764608 Msa0120120:intron 30.0%
CGCTATGTTAAGTTTAAATC+TGG + chr1_3:44764614-44764633 Msa0120120:intron 30.0%
! TTTAAATCTGGCTTAGATTC+TGG + chr1_3:44764626-44764645 Msa0120120:intron 30.0%
CTTTCAAATTAACTTCAGTG+GGG - chr1_3:44764763-44764782 None:intergenic 30.0%
CACTTTCAAATTAACTTCAG+TGG - chr1_3:44764765-44764784 None:intergenic 30.0%
!!! AGTGTTGATTTCTACCTTTT+TGG + chr1_3:44764781-44764800 Msa0120120:intron 30.0%
TTTATCATTTGCTCTTAGAC+AGG - chr1_3:44764999-44765018 None:intergenic 30.0%
!! ACACTAAAAGAGTATTAAGG+AGG - chr1_3:44765129-44765148 None:intergenic 30.0%
GATAAGTAGAGAAATCTCAA+GGG + chr1_3:44765219-44765238 Msa0120120:intron 30.0%
AAAGGTAAATGTGAGTGAAT+TGG - chr1_3:44765271-44765290 None:intergenic 30.0%
! ACTCACATTTACCTTTTAAG+TGG + chr1_3:44765275-44765294 Msa0120120:intron 30.0%
! CTTTTATGAGACCACTTAAA+AGG - chr1_3:44765289-44765308 None:intergenic 30.0%
!! TTCAGTACTGATGTTAATTG+AGG + chr1_3:44765669-44765688 Msa0120120:CDS 30.0%
! AATTTTATGGACAGGTTACT+TGG + chr1_3:44765845-44765864 Msa0120120:intron 30.0%
CTATTGTCTGTTCTGTTGTT+CGG + chr1_3:44763058-44763077 Msa0120120:five_prime_UTR 35.0%
TCATTGGAAGTAGCTATGAA+AGG - chr1_3:44763104-44763123 None:intergenic 35.0%
!! GAAGGAGAGAAAGTATTCAT+TGG - chr1_3:44763156-44763175 None:intergenic 35.0%
!! TTTTTGGAAAGTGAAGGGTA+AGG - chr1_3:44763192-44763211 None:intergenic 35.0%
!! TGGAGTTTTTGGAAAGTGAA+GGG - chr1_3:44763197-44763216 None:intergenic 35.0%
!! ATGGAGTTTTTGGAAAGTGA+AGG - chr1_3:44763198-44763217 None:intergenic 35.0%
! GGCAAAGAAAATGGAGTTTT+TGG - chr1_3:44763208-44763227 None:intergenic 35.0%
! TAACTTCGGTGTGATTTCAT+TGG - chr1_3:44763310-44763329 None:intergenic 35.0%
! AGCAACTTTTGCATCATTGA+AGG + chr1_3:44763424-44763443 Msa0120120:intron 35.0%
! GCAACTTTTGCATCATTGAA+GGG + chr1_3:44763425-44763444 Msa0120120:intron 35.0%
! TAAGATATAAGCGGCTTGTT+TGG - chr1_3:44763884-44763903 None:intergenic 35.0%
TAATGAGAAATGAGTATGGC+AGG + chr1_3:44763936-44763955 Msa0120120:intron 35.0%
! ACAAAGAGCTTTTAGTGAAG+AGG + chr1_3:44763996-44764015 Msa0120120:CDS 35.0%
! CAAAGAGCTTTTAGTGAAGA+GGG + chr1_3:44763997-44764016 Msa0120120:CDS 35.0%
!! GGAATAGATGATGGAATTTC+CGG - chr1_3:44764045-44764064 None:intergenic 35.0%
GGAAGAAAAGGAATAGATGA+TGG - chr1_3:44764054-44764073 None:intergenic 35.0%
! TATTCCTTTTCTTCCTCATG+TGG + chr1_3:44764059-44764078 Msa0120120:CDS 35.0%
!!! GTTTTAAAACTCACCACATG+AGG - chr1_3:44764075-44764094 None:intergenic 35.0%
!! GTATTCGAAATGAGAGCATT+TGG + chr1_3:44764322-44764341 Msa0120120:intron 35.0%
! TCAACTAATTCCGTGCTTTT+CGG + chr1_3:44764356-44764375 Msa0120120:intron 35.0%
! TAGAGCTTCTTCAAAGTGTT+GGG - chr1_3:44764395-44764414 None:intergenic 35.0%
ATAGAGCTTCTTCAAAGTGT+TGG - chr1_3:44764396-44764415 None:intergenic 35.0%
TTGAAGAAGCTCTATCTAAC+AGG + chr1_3:44764401-44764420 Msa0120120:CDS 35.0%
CTGCAATAATTGTATTTGGC+GGG + chr1_3:44764438-44764457 Msa0120120:CDS 35.0%
GATAGACACTCGTGTAATTT+AGG - chr1_3:44764524-44764543 None:intergenic 35.0%
TCCGTTATAGAGAGTAACAA+AGG - chr1_3:44764593-44764612 None:intergenic 35.0%
CAGTAGCAAACTATAATAGG+AGG - chr1_3:44764720-44764739 None:intergenic 35.0%
TTTGTAAAACATTGAGCCGT+AGG + chr1_3:44765088-44765107 Msa0120120:intron 35.0%
!! GGGACACTAAAAGAGTATTA+AGG - chr1_3:44765132-44765151 None:intergenic 35.0%
TTTCATAAATCAGACCCCAA+AGG - chr1_3:44765176-44765195 None:intergenic 35.0%
ATTTATGAAACTGCGACTCT+AGG + chr1_3:44765186-44765205 Msa0120120:intron 35.0%
CGATAAGTAGAGAAATCTCA+AGG + chr1_3:44765218-44765237 Msa0120120:intron 35.0%
!!! ATCGTTATTTTAATGGCAGC+TGG + chr1_3:44765391-44765410 Msa0120120:intron 35.0%
ATAGCATACCTTAGTTGCAA+AGG - chr1_3:44765476-44765495 None:intergenic 35.0%
! ATGCCTGATCACAATTTGTT+TGG + chr1_3:44765582-44765601 Msa0120120:intron 35.0%
GAACCAAACAAATTGTGATC+AGG - chr1_3:44765588-44765607 None:intergenic 35.0%
TTGAGCAACAAGAGAAAACA+AGG + chr1_3:44765701-44765720 Msa0120120:CDS 35.0%
TTTCTACACTGAAGTTGAAC+TGG + chr1_3:44765751-44765770 Msa0120120:intron 35.0%
GCATATATCGGCAAGAATTA+AGG - chr1_3:44766007-44766026 None:intergenic 35.0%
AGTCAAATGGATCAATTCTC+AGG - chr1_3:44766151-44766170 None:intergenic 35.0%
TTCAGTGTCAATATGGAACT+AGG - chr1_3:44766340-44766359 None:intergenic 35.0%
AGAACAGACAATAGCAGCTA+AGG - chr1_3:44763052-44763071 None:intergenic 40.0%
AGCTATGAAAGGTGGAAAGT+GGG - chr1_3:44763093-44763112 None:intergenic 40.0%
TAGCTATGAAAGGTGGAAAG+TGG - chr1_3:44763094-44763113 None:intergenic 40.0%
TTGGAAGTAGCTATGAAAGG+TGG - chr1_3:44763101-44763120 None:intergenic 40.0%
TAAGGTAGAATTGTGGAGGA+AGG - chr1_3:44763174-44763193 None:intergenic 40.0%
TGAAGGGTAAGGTAGAATTG+TGG - chr1_3:44763181-44763200 None:intergenic 40.0%
! TCAGGATTTTGTTCAGATGC+AGG + chr1_3:44763459-44763478 Msa0120120:CDS 40.0%
AGAAATGAGTATGGCAGGTT+AGG + chr1_3:44763941-44763960 Msa0120120:intron 40.0%
CTACTTCAATCCGAAAAGCA+CGG - chr1_3:44764369-44764388 None:intergenic 40.0%
!! GGGGTGCAAGTTTTAGTATA+AGG + chr1_3:44764941-44764960 Msa0120120:intron 40.0%
AAGGTGTACCCCATTGTTAT+GGG - chr1_3:44765157-44765176 None:intergenic 40.0%
! AAAGGTGTACCCCATTGTTA+TGG - chr1_3:44765158-44765177 None:intergenic 40.0%
ATAACAATGGGGTACACCTT+TGG + chr1_3:44765157-44765176 Msa0120120:intron 40.0%
TAACAATGGGGTACACCTTT+GGG + chr1_3:44765158-44765177 Msa0120120:intron 40.0%
TGCATTTGCCTTTGCAACTA+AGG + chr1_3:44765465-44765484 Msa0120120:CDS 40.0%
GTAGAAACATACCAGTTCCA+AGG - chr1_3:44765738-44765757 None:intergenic 40.0%
GTTCAAACATACACCACTTG+TGG - chr1_3:44765886-44765905 None:intergenic 40.0%
ATTAATCCGATTTCGGCATC+TGG + chr1_3:44765906-44765925 Msa0120120:CDS 40.0%
! AGACTTGCATTTTGTTGCTC+TGG + chr1_3:44766197-44766216 Msa0120120:three_prime_UTR 40.0%
ATGGAACTAGGACAGAATTC+TGG - chr1_3:44766328-44766347 None:intergenic 40.0%
AGGGTAAGGTAGAATTGTGG+AGG - chr1_3:44763178-44763197 None:intergenic 45.0%
ACAAAATCCTGAACCGTCTC+TGG - chr1_3:44763451-44763470 None:intergenic 45.0%
! TTTTGTTCAGATGCAGGTGC+AGG + chr1_3:44763465-44763484 Msa0120120:CDS 45.0%
! AGCTTTTAGTGAAGAGGGAG+AGG + chr1_3:44764002-44764021 Msa0120120:CDS 45.0%
GGAAGATGCAAATGAGATGC+CGG + chr1_3:44764023-44764042 Msa0120120:CDS 45.0%
CTCACCACATGAGGAAGAAA+AGG - chr1_3:44764066-44764085 None:intergenic 45.0%
! AGAGTATTAAGGAGGTCCCA+GGG - chr1_3:44765121-44765140 None:intergenic 45.0%
!! AAGAGTATTAAGGAGGTCCC+AGG - chr1_3:44765122-44765141 None:intergenic 45.0%
AGTGTCCCAACCCATAACAA+TGG + chr1_3:44765144-44765163 Msa0120120:intron 45.0%
GTGTCCCAACCCATAACAAT+GGG + chr1_3:44765145-44765164 Msa0120120:intron 45.0%
TGTCCCAACCCATAACAATG+GGG + chr1_3:44765146-44765165 Msa0120120:intron 45.0%
GTACCCCATTGTTATGGGTT+GGG - chr1_3:44765152-44765171 None:intergenic 45.0%
TGTACCCCATTGTTATGGGT+TGG - chr1_3:44765153-44765172 None:intergenic 45.0%
AACAATGGGGTACACCTTTG+GGG + chr1_3:44765159-44765178 Msa0120120:intron 45.0%
GTAGAGAAATCTCAAGGGTG+AGG + chr1_3:44765224-44765243 Msa0120120:intron 45.0%
CTGGAGCTGAAATTGGGTAT+AGG + chr1_3:44765410-44765429 Msa0120120:CDS 45.0%
GAGCTGAAATTGGGTATAGG+TGG + chr1_3:44765413-44765432 Msa0120120:CDS 45.0%
TATAGGTGGCACGTCATATG+AGG + chr1_3:44765427-44765446 Msa0120120:CDS 45.0%
GACAATTGGGTCAACTTGAC+TGG - chr1_3:44765617-44765636 None:intergenic 45.0%
CCGAAAAGGATGCGACAATT+GGG - chr1_3:44765630-44765649 None:intergenic 45.0%
! CCCAATTGTCGCATCCTTTT+CGG + chr1_3:44765627-44765646 Msa0120120:CDS 45.0%
! CCAATTGTCGCATCCTTTTC+GGG + chr1_3:44765628-44765647 Msa0120120:CDS 45.0%
! ACAAGGTGCAAGTATTGCCT+TGG + chr1_3:44765718-44765737 Msa0120120:CDS 45.0%
! TGCAAGTATTGCCTTGGAAC+TGG + chr1_3:44765724-44765743 Msa0120120:CDS 45.0%
! GAAGTACCAGATGCCGAAAT+CGG - chr1_3:44765915-44765934 None:intergenic 45.0%
TTTGGACACCTTGTCGTTGT+AGG - chr1_3:44765957-44765976 None:intergenic 45.0%
! ACAAGGTGTCCAAATTGCTC+TGG + chr1_3:44765963-44765982 Msa0120120:CDS 45.0%
TTTCCAGCACCAGAGCAATT+TGG - chr1_3:44765975-44765994 None:intergenic 45.0%
! AAATTGCTCTGGTGCTGGAA+AGG + chr1_3:44765974-44765993 Msa0120120:CDS 45.0%
AACTAGGACAGAATTCTGGC+AGG - chr1_3:44766324-44766343 None:intergenic 45.0%
!!! TTATAAAATTTGTAATTTTA+TGG + chr1_3:44765832-44765851 Msa0120120:intron 5.0%
AATTGCGTGCTCTTCTCCAC+AGG + chr1_3:44763275-44763294 Msa0120120:CDS 50.0%
CATCATTGAAGGGCCAGAGA+CGG + chr1_3:44763435-44763454 Msa0120120:CDS 50.0%
! GCGGTTTTCGTAAGCTATCC+TGG + chr1_3:44763732-44763751 Msa0120120:intron 50.0%
ATGGCAGCTGGAGCTGAAAT+TGG + chr1_3:44765403-44765422 Msa0120120:intron 50.0%
TGGCAGCTGGAGCTGAAATT+GGG + chr1_3:44765404-44765423 Msa0120120:intron 50.0%
CCCGAAAAGGATGCGACAAT+TGG - chr1_3:44765631-44765650 None:intergenic 50.0%
!! ATTGTCGCATCCTTTTCGGG+TGG + chr1_3:44765631-44765650 Msa0120120:CDS 50.0%
TACTTCTGTTAGACCCCTGC+AGG + chr1_3:44765929-44765948 Msa0120120:CDS 50.0%
TGTCGTTGTAGGAACCTGCA+GGG - chr1_3:44765946-44765965 None:intergenic 50.0%
TTGTCGTTGTAGGAACCTGC+AGG - chr1_3:44765947-44765966 None:intergenic 50.0%
TGCAGGTTCCTACAACGACA+AGG + chr1_3:44765946-44765965 Msa0120120:CDS 50.0%
TGTCCAAATTGCTCTGGTGC+TGG + chr1_3:44765969-44765988 Msa0120120:CDS 50.0%
CCATCTTCATCCCAGTGCAA+AGG - chr1_3:44766115-44766134 None:intergenic 50.0%
CCTTTGCACTGGGATGAAGA+TGG + chr1_3:44766112-44766131 Msa0120120:CDS 50.0%
TGCTCTTCTCCACAGGATGC+AGG + chr1_3:44763282-44763301 Msa0120120:CDS 55.0%
TCATTGGAGCCTGCATCCTG+TGG - chr1_3:44763294-44763313 None:intergenic 55.0%
!! TGGCGGGCTTATTGCACCAA+CGG + chr1_3:44764454-44764473 Msa0120120:CDS 55.0%
!!! TCCTTTTCGGGTGGAGCAGT+TGG + chr1_3:44765640-44765659 Msa0120120:CDS 55.0%
!! CAGGTTACTTGGCTTGCGCT+CGG + chr1_3:44765856-44765875 Msa0120120:intron 55.0%
GTCGTTGTAGGAACCTGCAG+GGG - chr1_3:44765945-44765964 None:intergenic 55.0%
TGTCCAACCTGCCTTTGCAC+TGG + chr1_3:44766101-44766120 Msa0120120:CDS 55.0%
GTCCAACCTGCCTTTGCACT+GGG + chr1_3:44766102-44766121 Msa0120120:CDS 55.0%
ATCCCAGTGCAAAGGCAGGT+TGG - chr1_3:44766107-44766126 None:intergenic 55.0%
CTTCATCCCAGTGCAAAGGC+AGG - chr1_3:44766111-44766130 None:intergenic 55.0%
TGAAGGGCCAGAGACGGTTC+AGG + chr1_3:44763441-44763460 Msa0120120:CDS 60.0%
GGAGATTGCGTGTGCAGCAG+CGG + chr1_3:44763962-44763981 Msa0120120:CDS 60.0%
AGCCGTAGGAGTCGAACCCT+GGG + chr1_3:44765102-44765121 Msa0120120:intron 60.0%
GTCCCAGGGTTCGACTCCTA+CGG - chr1_3:44765107-44765126 None:intergenic 60.0%
GCCAACTGCTCCACCCGAAA+AGG - chr1_3:44765644-44765663 None:intergenic 60.0%
!! TGCGCTCGGTGTTCCACAAG+TGG + chr1_3:44765870-44765889 Msa0120120:CDS 60.0%
GAGCCGTAGGAGTCGAACCC+TGG + chr1_3:44765101-44765120 Msa0120120:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 44762985 44766396 44762985 ID=Msa0120120;Name=Msa0120120
chr1_3 mRNA 44762985 44766396 44762985 ID=Msa0120120-mRNA-1;Parent=Msa0120120;Name=Msa0120120-mRNA-1;_AED=0.12;_eAED=0.12;_QI=171|1|1|1|1|1|8|224|305
chr1_3 exon 44762985 44763325 44762985 ID=Msa0120120-mRNA-1:exon:13344;Parent=Msa0120120-mRNA-1
chr1_3 exon 44763426 44763543 44763426 ID=Msa0120120-mRNA-1:exon:13345;Parent=Msa0120120-mRNA-1
chr1_3 exon 44763958 44764080 44763958 ID=Msa0120120-mRNA-1:exon:13346;Parent=Msa0120120-mRNA-1
chr1_3 exon 44764389 44764475 44764389 ID=Msa0120120-mRNA-1:exon:13347;Parent=Msa0120120-mRNA-1
chr1_3 exon 44765410 44765486 44765410 ID=Msa0120120-mRNA-1:exon:13348;Parent=Msa0120120-mRNA-1
chr1_3 exon 44765618 44765745 44765618 ID=Msa0120120-mRNA-1:exon:13349;Parent=Msa0120120-mRNA-1
chr1_3 exon 44765859 44765995 44765859 ID=Msa0120120-mRNA-1:exon:13350;Parent=Msa0120120-mRNA-1
chr1_3 exon 44766095 44766396 44766095 ID=Msa0120120-mRNA-1:exon:13351;Parent=Msa0120120-mRNA-1
chr1_3 five_prime_UTR 44762985 44763155 44762985 ID=Msa0120120-mRNA-1:five_prime_utr;Parent=Msa0120120-mRNA-1
chr1_3 CDS 44763156 44763325 44763156 ID=Msa0120120-mRNA-1:cds;Parent=Msa0120120-mRNA-1
chr1_3 CDS 44763426 44763543 44763426 ID=Msa0120120-mRNA-1:cds;Parent=Msa0120120-mRNA-1
chr1_3 CDS 44763958 44764080 44763958 ID=Msa0120120-mRNA-1:cds;Parent=Msa0120120-mRNA-1
chr1_3 CDS 44764389 44764475 44764389 ID=Msa0120120-mRNA-1:cds;Parent=Msa0120120-mRNA-1
chr1_3 CDS 44765410 44765486 44765410 ID=Msa0120120-mRNA-1:cds;Parent=Msa0120120-mRNA-1
chr1_3 CDS 44765618 44765745 44765618 ID=Msa0120120-mRNA-1:cds;Parent=Msa0120120-mRNA-1
chr1_3 CDS 44765859 44765995 44765859 ID=Msa0120120-mRNA-1:cds;Parent=Msa0120120-mRNA-1
chr1_3 CDS 44766095 44766172 44766095 ID=Msa0120120-mRNA-1:cds;Parent=Msa0120120-mRNA-1
chr1_3 three_prime_UTR 44766173 44766396 44766173 ID=Msa0120120-mRNA-1:three_prime_utr;Parent=Msa0120120-mRNA-1
Gene Sequence

>Msa0120120

ATGAATACTTTCTCTCCTTCCTCCACAATTCTACCTTACCCTTCACTTTCCAAAAACTCCATTTTCTTTGCCCCTTTTAAAGGTAAAACCAACCAATTTTCTTTTTCTAAGTCAAGGATAATTGCGTGCTCTTCTCCACAGGATGCAGGCTCCAATGAAATCACACCGAACAACTTTTGCATCATTGAAGGGCCAGAGACGGTTCAGGATTTTGTTCAGATGCAGGTGCAGGAAATTCAAGATAATATAAAGAGTAGACGCAATAAAATCTTTCTTCTTATGGAAGAGGTTAGGAGATTGCGTGTGCAGCAGCGGCTAAGAAGTATACAAAGAGCTTTTAGTGAAGAGGGAGAGGAAGATGCAAATGAGATGCCGGAAATTCCATCATCTATTCCTTTTCTTCCTCATGTGACACCCAACACTTTGAAGAAGCTCTATCTAACAGGCGCATCATTCATATCTGCAATAATTGTATTTGGCGGGCTTATTGCACCAACGCTGGAGCTGAAATTGGGTATAGGTGGCACGTCATATGAGGATTTCATAAGAAGCTTGCATTTGCCTTTGCAACTAAGTCAAGTTGACCCAATTGTCGCATCCTTTTCGGGTGGAGCAGTTGGCGTGATTTCAGTACTGATGTTAATTGAGGCTAATAATGTTGAGCAACAAGAGAAAACAAGGTGCAAGTATTGCCTTGGAACTGGTTACTTGGCTTGCGCTCGGTGTTCCACAAGTGGTGTATGTTTGAACATTAATCCGATTTCGGCATCTGGTACTTCTGTTAGACCCCTGCAGGTTCCTACAACGACAAGGTGTCCAAATTGCTCTGGTGCTGGAAAGGTTATGTGTCCAACCTGCCTTTGCACTGGGATGAAGATGGCAAGTGAACATGACCTGAGAATTGATCCATTTGACTAA

Protein sequence

>Msa0120120

MNTFSPSSTILPYPSLSKNSIFFAPFKGKTNQFSFSKSRIIACSSPQDAGSNEITPNNFCIIEGPETVQDFVQMQVQEIQDNIKSRRNKIFLLMEEVRRLRVQQRLRSIQRAFSEEGEEDANEMPEIPSSIPFLPHVTPNTLKKLYLTGASFISAIIVFGGLIAPTLELKLGIGGTSYEDFIRSLHLPLQLSQVDPIVASFSGGAVGVISVLMLIEANNVEQQEKTRCKYCLGTGYLACARCSTSGVCLNINPISASGTSVRPLQVPTTTRCPNCSGAGKVMCPTCLCTGMKMASEHDLRIDPFD*