AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1225560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1225560 MtrunA17_Chr2g0328921 99.054 317 1 1 1 317 1 315 0.0 655
Msa1225560 MtrunA17_Chr7g0258011 66.319 288 72 5 44 313 67 347 6.07e-133 381
Msa1225560 MtrunA17_Chr1g0173841 63.036 303 78 5 44 317 93 390 7.27e-133 383
Msa1225560 MtrunA17_Chr8g0352011 64.931 288 80 8 44 314 55 338 7.40e-127 365
Msa1225560 MtrunA17_Chr5g0422571 68.349 218 55 4 84 298 56 262 4.20e-108 316
Msa1225560 MtrunA17_Chr2g0321291 60.166 241 85 3 73 307 67 302 3.43e-105 310
Msa1225560 MtrunA17_Chr4g0026521 59.289 253 92 4 60 310 48 291 7.58e-103 303
Msa1225560 MtrunA17_Chr1g0198651 78.261 161 32 1 135 292 99 259 1.73e-95 284
Msa1225560 MtrunA17_Chr4g0053341 60.870 230 75 4 60 289 11 225 7.14e-94 278
Msa1225560 MtrunA17_Chr1g0200421 39.597 149 80 5 145 286 245 390 1.30e-25 106
Msa1225560 MtrunA17_Chr2g0320341 34.615 156 95 3 138 286 231 386 5.17e-22 95.5
Msa1225560 MtrunA17_Chr4g0029521 35.971 139 80 4 145 282 61 191 1.51e-19 89.0
Msa1225560 MtrunA17_Chr7g0268961 34.868 152 81 7 139 282 33 174 1.65e-19 89.0
Msa1225560 MtrunA17_Chr8g0342421 30.151 199 116 8 97 282 26 214 2.42e-19 88.6
Msa1225560 MtrunA17_Chr1g0199101 33.939 165 89 8 128 282 45 199 2.94e-19 88.2
Msa1225560 MtrunA17_Chr8g0382121 38.849 139 78 6 153 286 127 263 3.10e-19 86.7
Msa1225560 MtrunA17_Chr1g0151351 35.211 142 81 5 143 282 62 194 3.38e-19 87.8
Msa1225560 MtrunA17_Chr1g0181381 34.247 146 87 4 138 282 54 191 4.74e-19 87.4
Msa1225560 MtrunA17_Chr1g0185121 35.211 142 81 5 143 282 61 193 8.18e-19 86.7
Msa1225560 MtrunA17_Chr1g0163001 32.927 164 92 6 128 282 41 195 8.53e-19 86.7
Msa1225560 MtrunA17_Chr1g0210821 33.562 146 87 5 138 282 60 196 1.13e-18 86.7
Msa1225560 MtrunA17_Chr2g0326381 34.247 146 87 4 138 282 48 185 1.19e-18 85.9
Msa1225560 MtrunA17_Chr1g0191991 34.337 166 89 7 127 282 60 215 1.45e-18 86.3
Msa1225560 MtrunA17_Chr1g0162971 35.252 139 80 5 145 282 64 193 1.46e-18 85.9
Msa1225560 MtrunA17_Chr7g0263941 34.694 147 84 6 138 282 50 186 3.89e-18 84.3
Msa1225560 MtrunA17_Chr2g0330171 32.877 146 88 4 138 282 62 198 5.35e-18 84.3
Msa1225560 MtrunA17_Chr8g0373541 33.813 139 82 4 145 282 56 185 7.48e-18 84.0
Msa1225560 MtrunA17_Chr3g0123941 35.152 165 93 7 153 313 139 293 8.82e-18 82.8
Msa1225560 MtrunA17_Chr2g0324991 33.803 142 84 5 138 277 8 141 8.93e-17 76.3
Msa1225560 MtrunA17_Chr4g0040571 31.507 146 90 4 138 282 55 191 1.28e-16 80.1
Msa1225560 MtrunA17_Chr3g0141431 30.723 166 97 5 123 278 15 172 1.98e-16 79.3
Msa1225560 MtrunA17_Chr8g0375521 30.986 142 87 5 143 281 48 181 7.38e-13 68.9
Msa1225560 MtrunA17_Chr6g0479921 28.966 145 93 4 143 285 50 186 3.32e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1225560 AT1G51220.1 61.801 322 95 8 6 310 27 337 3.07e-131 377
Msa1225560 AT3G57670.1 61.059 321 73 5 44 317 67 382 2.69e-127 369
Msa1225560 AT3G20880.1 61.462 301 82 7 36 310 118 410 9.49e-123 358
Msa1225560 AT1G13290.1 68.269 208 50 4 88 293 52 245 5.10e-102 301
Msa1225560 AT1G34790.1 68.159 201 63 1 90 289 83 283 3.99e-100 297
Msa1225560 AT1G08290.1 72.571 175 41 2 113 286 148 316 1.65e-94 284
Msa1225560 AT1G34370.3 37.209 172 89 6 131 286 7 175 2.45e-26 105
Msa1225560 AT1G34370.2 39.735 151 79 5 145 286 238 385 5.12e-26 108
Msa1225560 AT1G34370.1 39.735 151 79 5 145 286 238 385 5.12e-26 108
Msa1225560 AT5G22890.1 38.994 159 83 7 142 290 209 363 8.24e-23 97.8
Msa1225560 AT2G02080.1 31.088 193 113 6 101 282 23 206 1.46e-20 92.4
Msa1225560 AT2G02080.4 31.088 193 113 6 101 282 23 206 1.46e-20 92.4
Msa1225560 AT2G02080.5 31.088 193 113 6 101 282 23 206 1.46e-20 92.4
Msa1225560 AT2G02080.3 31.088 193 113 6 101 282 23 206 1.46e-20 92.4
Msa1225560 AT1G14580.1 34.320 169 93 5 123 282 46 205 5.56e-20 90.5
Msa1225560 AT1G14580.2 34.320 169 93 5 123 282 46 205 5.56e-20 90.5
Msa1225560 AT1G14580.3 34.320 169 93 5 123 282 60 219 6.76e-20 90.5
Msa1225560 AT1G55110.3 30.455 220 123 8 73 282 17 216 1.68e-19 89.0
Msa1225560 AT1G55110.1 30.455 220 123 8 73 282 17 216 1.68e-19 89.0
Msa1225560 AT1G55110.2 30.455 220 123 8 73 282 17 216 1.68e-19 89.0
Msa1225560 AT5G03150.1 35.252 139 81 4 145 282 76 206 2.28e-19 89.0
Msa1225560 AT5G66730.1 29.843 191 111 7 105 282 4 184 4.62e-19 87.8
Msa1225560 AT2G02070.2 34.247 146 86 4 138 282 68 204 7.95e-19 87.4
Msa1225560 AT2G02070.1 34.247 146 86 4 138 282 68 204 7.95e-19 87.4
Msa1225560 AT2G02080.6 34.783 138 80 4 146 282 1 129 3.28e-18 85.1
Msa1225560 AT2G02080.2 34.783 138 80 4 146 282 1 129 3.28e-18 85.1
Msa1225560 AT1G03840.2 33.562 146 87 5 138 282 55 191 1.69e-17 83.2
Msa1225560 AT1G03840.1 33.562 146 87 5 138 282 57 193 1.78e-17 83.2
Msa1225560 AT5G44160.1 33.094 139 83 4 145 282 60 189 2.21e-17 82.8
Msa1225560 AT3G45260.2 35.252 139 81 4 145 282 62 192 2.65e-17 82.4
Msa1225560 AT3G45260.1 35.252 139 81 4 145 282 62 192 2.65e-17 82.4
Msa1225560 AT5G44160.2 33.094 139 83 4 145 282 21 150 3.09e-17 82.4
Msa1225560 AT5G60470.2 34.074 135 81 3 145 278 67 194 3.24e-17 82.4
Msa1225560 AT5G60470.3 34.074 135 81 3 145 278 63 190 3.32e-17 82.4
Msa1225560 AT5G60470.1 34.074 135 81 3 145 278 58 185 3.56e-17 82.0
Msa1225560 AT3G50700.1 32.192 146 89 4 138 282 50 186 1.48e-16 80.5
Msa1225560 AT4G02670.1 32.192 146 90 3 138 282 69 206 1.94e-16 79.7
Msa1225560 AT4G02670.2 32.192 146 90 3 138 282 71 208 2.05e-16 79.7
Msa1225560 AT3G13810.5 32.192 146 90 4 138 282 81 218 3.89e-16 79.3
Msa1225560 AT3G13810.4 32.192 146 90 4 138 282 86 223 4.07e-16 79.3
Msa1225560 AT3G13810.1 32.192 146 90 4 138 282 86 223 4.07e-16 79.3
Msa1225560 AT3G13810.2 32.192 146 90 4 138 282 87 224 4.12e-16 79.3
Msa1225560 AT3G13810.3 32.192 146 90 4 138 282 73 210 4.17e-16 79.3
Msa1225560 AT3G13810.6 32.192 146 90 4 138 282 67 204 4.65e-16 79.0

Find 71 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGTTCCTCTTAGAGATTC+TGG 0.183675 8_1:+91011866 None:intergenic
CCAATGACTTCAATGGTTAT+TGG 0.191789 8_1:-91013845 Msa1225560:CDS
CAACACTTTCTACACATAAA+TGG 0.204972 8_1:+91011707 None:intergenic
AAAGATCATATCAAGGCTTT+TGG 0.250816 8_1:-91011581 Msa1225560:CDS
GGAAATGGACATAAAGCTTA+TGG 0.262958 8_1:-91011560 Msa1225560:CDS
TATAGAATGGAGGGTTATTT+AGG 0.265203 8_1:+91013817 None:intergenic
GTTACTGTGGCTTTGCATCT+AGG 0.282488 8_1:-91013600 Msa1225560:CDS
AAAGATATGTTGTTACTATA+AGG 0.326372 8_1:+91013789 None:intergenic
CATGTTGTTGTATCTATTGA+AGG 0.358064 8_1:+91013392 None:intergenic
CATGATGATGATGAAAGATT+AGG 0.383112 8_1:+91013887 None:intergenic
CATCATTTCCATGGAACTAA+AGG 0.398872 8_1:+91013677 None:intergenic
TGATATGATGATAGTGGAAA+AGG 0.399989 8_1:+91013924 None:intergenic
AACTTTGGTATTGTTGTTGT+GGG 0.402964 8_1:-91011631 Msa1225560:CDS
CCAATAACCATTGAAGTCAT+TGG 0.409520 8_1:+91013845 None:intergenic
TGCAAAGCATTTGCAGTAAG+AGG 0.436467 8_1:-91011686 Msa1225560:CDS
AGAATCTTCCTTTAGTTCCA+TGG 0.448392 8_1:-91013685 Msa1225560:CDS
CTTCATATTCATCATTTCCA+TGG 0.449667 8_1:+91013668 None:intergenic
GATATATGATATGATGATAG+TGG 0.455440 8_1:+91013918 None:intergenic
TTACTGTGGCTTTGCATCTA+GGG 0.458041 8_1:-91013599 Msa1225560:CDS
AAACTTTGGTATTGTTGTTG+TGG 0.458245 8_1:-91011632 Msa1225560:CDS
GTCCACCAAATAAAATTAGC+AGG 0.460803 8_1:-91013491 Msa1225560:CDS
CCATGTTATTGTTGTGCACC+TGG 0.466023 8_1:-91011821 Msa1225560:CDS
ATTGAAGTCATTGGAGAAGT+AGG 0.466777 8_1:+91013854 None:intergenic
ACCCCTGCTCAGATTCTAAT+CGG 0.468227 8_1:-91013450 Msa1225560:CDS
TCTCTTGGAGGTGGAGATGA+AGG 0.479256 8_1:+91013756 None:intergenic
AAAGGAAGAGCTTCTCTTGG+AGG 0.486389 8_1:+91013744 None:intergenic
AAATCAGATGAACTTATACT+TGG 0.487140 8_1:+91013573 None:intergenic
AAAATATATAGATGCATATG+TGG 0.490811 8_1:-91011916 Msa1225560:intron
AGCAAAGGAAGAGCTTCTCT+TGG 0.490887 8_1:+91013741 None:intergenic
TACTTCTCCAATGACTTCAA+TGG 0.492298 8_1:-91013852 Msa1225560:CDS
GATATGATGATAGTGGAAAA+GGG 0.496004 8_1:+91013925 None:intergenic
TTGAAGGTCTTGAAACAAAG+AGG 0.499110 8_1:+91013408 None:intergenic
AAATTAGCAGGGGTCAGTAT+TGG 0.506191 8_1:-91013479 Msa1225560:CDS
TAAGGAAAATTATAGAATGG+AGG 0.508828 8_1:+91013807 None:intergenic
GGACCGATTAGAATCTGAGC+AGG 0.523985 8_1:+91013447 None:intergenic
CATGGAAATGATGAATATGA+AGG 0.524476 8_1:-91013667 Msa1225560:CDS
GGAAGAGCTTCTCTTGGAGG+TGG 0.534319 8_1:+91013747 None:intergenic
ATCACTTAAAGATCATATCA+AGG 0.535427 8_1:-91011588 Msa1225560:CDS
ACATGGATCACAATATAGAA+AGG 0.537364 8_1:-91011891 Msa1225560:CDS
CTATAAGGAAAATTATAGAA+TGG 0.547263 8_1:+91013804 None:intergenic
CCAGGTGCACAACAATAACA+TGG 0.547993 8_1:+91011821 None:intergenic
AAATATATAGATGCATATGT+GGG 0.547995 8_1:-91011915 Msa1225560:intron
ATTAGAATCTGAGCAGGGGT+AGG 0.550899 8_1:+91013453 None:intergenic
AAGGAAAATTATAGAATGGA+GGG 0.551334 8_1:+91013808 None:intergenic
TTGAAGTCATTGGAGAAGTA+GGG 0.551474 8_1:+91013855 None:intergenic
TCAATGTTGTTCTTGCATCC+AGG 0.558572 8_1:+91011803 None:intergenic
AGAGGGCATGAAAACTGTGT+TGG 0.560971 8_1:+91013426 None:intergenic
CATGGATCACAATATAGAAA+GGG 0.565142 8_1:-91011890 Msa1225560:CDS
ACACATTACAAGAGAAAGCA+TGG 0.565234 8_1:-91011737 Msa1225560:CDS
GGGAGTCTTAGCATTGCTGT+TGG 0.566939 8_1:+91011842 None:intergenic
TTAGAATCTGAGCAGGGGTA+GGG 0.569587 8_1:+91013454 None:intergenic
TAGATGCATATGTGGGGACA+TGG 0.582440 8_1:-91011908 Msa1225560:CDS
AAGGGACCAGAATCTCTAAG+AGG 0.583893 8_1:-91011872 Msa1225560:CDS
TCCACCAAATAAAATTAGCA+GGG 0.584942 8_1:-91013490 Msa1225560:CDS
TGATGATGAAAGATTAGGAA+AGG 0.592084 8_1:+91013892 None:intergenic
ATATATACTCAGATATGTTG+TGG 0.592325 8_1:-91011313 Msa1225560:three_prime_UTR
AGTGTTCTAAAATCTTTGAG+TGG 0.612744 8_1:+91011764 None:intergenic
TGAAGGTCTTGAAACAAAGA+GGG 0.613383 8_1:+91013409 None:intergenic
GTAGGGCTTAGGTTAAGCAA+AGG 0.619991 8_1:+91013726 None:intergenic
GACCGATTAGAATCTGAGCA+GGG 0.623713 8_1:+91013448 None:intergenic
CATTTGCAGTAAGAGGTGAC+TGG 0.624837 8_1:-91011679 Msa1225560:CDS
AGATGATGATGCCGTTACTG+TGG 0.634808 8_1:-91013613 Msa1225560:CDS
CAATAGATACAACAACATGC+AGG 0.643534 8_1:-91013388 Msa1225560:intron
TAGATGCAAAGCCACAGTAA+CGG 0.646015 8_1:+91013602 None:intergenic
CTATAAAGACAAGACAGCTG+TGG 0.651073 8_1:-91011431 Msa1225560:three_prime_UTR
CAAGATCAAGATGATGAACA+TGG 0.669051 8_1:-91011518 Msa1225560:CDS
AATATATAGATGCATATGTG+GGG 0.677061 8_1:-91011914 Msa1225560:intron
CCACCAAATAAAATTAGCAG+GGG 0.685279 8_1:-91013489 Msa1225560:CDS
ACCGATTAGAATCTGAGCAG+GGG 0.690964 8_1:+91013449 None:intergenic
CAGGTGCACAACAATAACAT+GGG 0.695885 8_1:+91011822 None:intergenic
GATCAAGATGATGAACATGG+TGG 0.762207 8_1:-91011515 Msa1225560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATACAAAAATATAATTGA+AGG + chr8_1:91012316-91012335 None:intergenic 10.0%
!! ATTCTATATTAGTAAATTTA+GGG - chr8_1:91013163-91013182 Msa1225560:intron 10.0%
!! AAGAATTTAAAGAAAGAAAA+AGG - chr8_1:91012003-91012022 Msa1225560:intron 15.0%
!!! TTTTTGTATGTTTGTAATTT+AGG - chr8_1:91012219-91012238 Msa1225560:intron 15.0%
!!! TTTTGTATGTTTGTAATTTA+GGG - chr8_1:91012220-91012239 Msa1225560:intron 15.0%
!! TAAAATGTATATAAAAGGAA+AGG + chr8_1:91012281-91012300 None:intergenic 15.0%
!! AGAGATAAAATGTATATAAA+AGG + chr8_1:91012286-91012305 None:intergenic 15.0%
!! TGTATTAGATAAAAATTTGA+TGG - chr8_1:91012329-91012348 Msa1225560:intron 15.0%
!!! GCTATTTATGTTTATTTTTA+TGG + chr8_1:91012527-91012546 None:intergenic 15.0%
!! AAACCATGTATTTATTATAT+TGG + chr8_1:91012748-91012767 None:intergenic 15.0%
!!! AACTTACACAAATAAATTTT+TGG + chr8_1:91012854-91012873 None:intergenic 15.0%
!!! TTTTTTTTTAATGAGTACAA+GGG + chr8_1:91013065-91013084 None:intergenic 15.0%
!!! TTTTTTTTTTAATGAGTACA+AGG + chr8_1:91013066-91013085 None:intergenic 15.0%
!! TTTACTAATATAGAATCATT+AGG + chr8_1:91013159-91013178 None:intergenic 15.0%
!! GATTCTATATTAGTAAATTT+AGG - chr8_1:91013162-91013181 Msa1225560:intron 15.0%
!!! TTAGTTGATATTAATAGAAA+AGG + chr8_1:91013277-91013296 None:intergenic 15.0%
!! CTATAAGGAAAATTATAGAA+TGG + chr8_1:91011437-91011456 None:intergenic 20.0%
!! AAAGATATGTTGTTACTATA+AGG + chr8_1:91011452-91011471 None:intergenic 20.0%
!! ATTATGACATAAATTGAAAG+CGG - chr8_1:91011955-91011974 Msa1225560:intron 20.0%
!! ATTAGATAAAAATTTGATGG+AGG - chr8_1:91012332-91012351 Msa1225560:intron 20.0%
!! TTAGATAAAAATTTGATGGA+GGG - chr8_1:91012333-91012352 Msa1225560:intron 20.0%
!! AAAATTGACAATTGATATCT+AGG - chr8_1:91012361-91012380 Msa1225560:intron 20.0%
!! AAATTGACAATTGATATCTA+GGG - chr8_1:91012362-91012381 Msa1225560:intron 20.0%
!! TACTAGAGTTTGAAAAATTA+TGG + chr8_1:91012470-91012489 None:intergenic 20.0%
!! CATCCAATATAATAAATACA+TGG - chr8_1:91012742-91012761 Msa1225560:intron 20.0%
!!! TTTTTTTAGTAGTGTGAAAA+GGG + chr8_1:91012911-91012930 None:intergenic 20.0%
!!! ATTTTTTTAGTAGTGTGAAA+AGG + chr8_1:91012912-91012931 None:intergenic 20.0%
!!! CATTACAATTTTTTTTGGAA+GGG + chr8_1:91013032-91013051 None:intergenic 20.0%
!! CTTCCAAAAAAAATTGTAAT+GGG - chr8_1:91013031-91013050 Msa1225560:intron 20.0%
!!! AATCCCATTACAATTTTTTT+TGG + chr8_1:91013037-91013056 None:intergenic 20.0%
!!! ATATTAGTAAATTTAGGGTT+TGG - chr8_1:91013168-91013187 Msa1225560:intron 20.0%
!! AAACATTTGTCAATAAAACA+GGG - chr8_1:91013200-91013219 Msa1225560:intron 20.0%
!!! ACATATGCATCTATATATTT+TGG + chr8_1:91013323-91013342 None:intergenic 20.0%
!! AAAATATATAGATGCATATG+TGG - chr8_1:91013322-91013341 Msa1225560:intron 20.0%
!! AAATATATAGATGCATATGT+GGG - chr8_1:91013323-91013342 Msa1225560:intron 20.0%
! GATATATGATATGATGATAG+TGG + chr8_1:91011323-91011342 None:intergenic 25.0%
! AAGGAAAATTATAGAATGGA+GGG + chr8_1:91011433-91011452 None:intergenic 25.0%
! TAAGGAAAATTATAGAATGG+AGG + chr8_1:91011434-91011453 None:intergenic 25.0%
! AAATCAGATGAACTTATACT+TGG + chr8_1:91011668-91011687 None:intergenic 25.0%
! TAAAGGGGTAGAAAAATAAA+GGG + chr8_1:91012043-91012062 None:intergenic 25.0%
!!! GAAATTTTCTGAAAAAGAAG+AGG - chr8_1:91012090-91012109 Msa1225560:intron 25.0%
! TATATAAAAGGAAAGGAAAG+GGG + chr8_1:91012274-91012293 None:intergenic 25.0%
! GTATATAAAAGGAAAGGAAA+GGG + chr8_1:91012275-91012294 None:intergenic 25.0%
! TGTATATAAAAGGAAAGGAA+AGG + chr8_1:91012276-91012295 None:intergenic 25.0%
! TGTTAATGTTAACATCATCA+CGG - chr8_1:91012421-91012440 Msa1225560:intron 25.0%
! ATCCTAATAAAGAAGTAGTT+CGG + chr8_1:91012575-91012594 None:intergenic 25.0%
!!! TCATTTCAATTGTTTTACCA+CGG + chr8_1:91012963-91012982 None:intergenic 25.0%
!! TTAAACGTTTTTCTTCAAAG+TGG - chr8_1:91012983-91013002 Msa1225560:intron 25.0%
!!! CCATTACAATTTTTTTTGGA+AGG + chr8_1:91013033-91013052 None:intergenic 25.0%
! CCTTCCAAAAAAAATTGTAA+TGG - chr8_1:91013030-91013049 Msa1225560:intron 25.0%
! CATAAAGATAGAATTAGAGA+TGG + chr8_1:91013118-91013137 None:intergenic 25.0%
! CAAACATTTGTCAATAAAAC+AGG - chr8_1:91013199-91013218 Msa1225560:intron 25.0%
! AATATATAGATGCATATGTG+GGG - chr8_1:91013324-91013343 Msa1225560:intron 25.0%
!! TGATCTTTTGTGCTTAAAAT+CGG + chr8_1:91013634-91013653 None:intergenic 25.0%
! ATCACTTAAAGATCATATCA+AGG - chr8_1:91013650-91013669 Msa1225560:CDS 25.0%
!! ATGTTTTGCACTAATTACAT+TGG - chr8_1:91013832-91013851 Msa1225560:CDS 25.0%
!! GATATGATGATAGTGGAAAA+GGG + chr8_1:91011316-91011335 None:intergenic 30.0%
!! TGATATGATGATAGTGGAAA+AGG + chr8_1:91011317-91011336 None:intergenic 30.0%
! TGATGATGAAAGATTAGGAA+AGG + chr8_1:91011349-91011368 None:intergenic 30.0%
! CATGATGATGATGAAAGATT+AGG + chr8_1:91011354-91011373 None:intergenic 30.0%
TATAGAATGGAGGGTTATTT+AGG + chr8_1:91011424-91011443 None:intergenic 30.0%
! GAAGATCTTCATGTTTTGTA+GGG + chr8_1:91011532-91011551 None:intergenic 30.0%
! AGAAGATCTTCATGTTTTGT+AGG + chr8_1:91011533-91011552 None:intergenic 30.0%
CTTCATATTCATCATTTCCA+TGG + chr8_1:91011573-91011592 None:intergenic 30.0%
CATGGAAATGATGAATATGA+AGG - chr8_1:91011571-91011590 Msa1225560:CDS 30.0%
TCCACCAAATAAAATTAGCA+GGG - chr8_1:91011748-91011767 Msa1225560:CDS 30.0%
CATGTTGTTGTATCTATTGA+AGG + chr8_1:91011849-91011868 None:intergenic 30.0%
! TTCTTTTACCTGAGTATGAA+TGG + chr8_1:91011899-91011918 None:intergenic 30.0%
GTAAAGGGGTAGAAAAATAA+AGG + chr8_1:91012044-91012063 None:intergenic 30.0%
TTAAGATCTGGCAAAGTAAA+GGG + chr8_1:91012059-91012078 None:intergenic 30.0%
ATTAAGATCTGGCAAAGTAA+AGG + chr8_1:91012060-91012079 None:intergenic 30.0%
CCTCAAAAGTAATTAAGATC+TGG + chr8_1:91012071-91012090 None:intergenic 30.0%
!! CCAGATCTTAATTACTTTTG+AGG - chr8_1:91012068-91012087 Msa1225560:intron 30.0%
GTTAATGTTAACATCATCAC+GGG - chr8_1:91012422-91012441 Msa1225560:intron 30.0%
TAATAAAGAAGTAGTTCGGA+AGG + chr8_1:91012571-91012590 None:intergenic 30.0%
TTCCGAACTACTTCTTTATT+AGG - chr8_1:91012570-91012589 Msa1225560:intron 30.0%
GAAAAGGTGACAATATATGT+AGG + chr8_1:91012600-91012619 None:intergenic 30.0%
GTGTATAGGATTAAAGGAAA+AGG + chr8_1:91012616-91012635 None:intergenic 30.0%
CTTTAATCCTATACACCATA+GGG - chr8_1:91012620-91012639 Msa1225560:intron 30.0%
! CAATTATTTCTTAGTCCCTA+TGG + chr8_1:91012638-91012657 None:intergenic 30.0%
TAAGAGGATGTATATGATCT+TGG + chr8_1:91012686-91012705 None:intergenic 30.0%
AAGATCATATACATCCTCTT+AGG - chr8_1:91012685-91012704 Msa1225560:intron 30.0%
CAAAAACAAAATTGAATCCG+TGG - chr8_1:91012943-91012962 Msa1225560:intron 30.0%
GAAGGGACATTACAAAATAT+TGG + chr8_1:91013015-91013034 None:intergenic 30.0%
ATCTTTATGTGTTACAGAGT+TGG - chr8_1:91013129-91013148 Msa1225560:intron 30.0%
TCTTTATGTGTTACAGAGTT+GGG - chr8_1:91013130-91013149 Msa1225560:intron 30.0%
ACATGGATCACAATATAGAA+AGG - chr8_1:91013347-91013366 Msa1225560:intron 30.0%
CATGGATCACAATATAGAAA+GGG - chr8_1:91013348-91013367 Msa1225560:intron 30.0%
!! AGTGTTCTAAAATCTTTGAG+TGG + chr8_1:91013477-91013496 None:intergenic 30.0%
CAACACTTTCTACACATAAA+TGG + chr8_1:91013534-91013553 None:intergenic 30.0%
! AAACTTTGGTATTGTTGTTG+TGG - chr8_1:91013606-91013625 Msa1225560:CDS 30.0%
! AACTTTGGTATTGTTGTTGT+GGG - chr8_1:91013607-91013626 Msa1225560:CDS 30.0%
! AAAGATCATATCAAGGCTTT+TGG - chr8_1:91013657-91013676 Msa1225560:CDS 30.0%
TTGAAGTCATTGGAGAAGTA+GGG + chr8_1:91011386-91011405 None:intergenic 35.0%
ATTGAAGTCATTGGAGAAGT+AGG + chr8_1:91011387-91011406 None:intergenic 35.0%
TACTTCTCCAATGACTTCAA+TGG - chr8_1:91011386-91011405 Msa1225560:three_prime_UTR 35.0%
CCAATAACCATTGAAGTCAT+TGG + chr8_1:91011396-91011415 None:intergenic 35.0%
CCAATGACTTCAATGGTTAT+TGG - chr8_1:91011393-91011412 Msa1225560:three_prime_UTR 35.0%
! AGAATCTTCCTTTAGTTCCA+TGG - chr8_1:91011553-91011572 Msa1225560:CDS 35.0%
CATCATTTCCATGGAACTAA+AGG + chr8_1:91011564-91011583 None:intergenic 35.0%
GTCCACCAAATAAAATTAGC+AGG - chr8_1:91011747-91011766 Msa1225560:CDS 35.0%
CCACCAAATAAAATTAGCAG+GGG - chr8_1:91011749-91011768 Msa1225560:CDS 35.0%
! TGACCCCTGCTAATTTTATT+TGG + chr8_1:91011755-91011774 None:intergenic 35.0%
TGAAGGTCTTGAAACAAAGA+GGG + chr8_1:91011832-91011851 None:intergenic 35.0%
TTGAAGGTCTTGAAACAAAG+AGG + chr8_1:91011833-91011852 None:intergenic 35.0%
CAATAGATACAACAACATGC+AGG - chr8_1:91011850-91011869 Msa1225560:CDS 35.0%
! ACTCTTTTCCATTCATACTC+AGG - chr8_1:91011888-91011907 Msa1225560:CDS 35.0%
ATGACATAAATTGAAAGCGG+TGG - chr8_1:91011958-91011977 Msa1225560:intron 35.0%
TAAGATCTGGCAAAGTAAAG+GGG + chr8_1:91012058-91012077 None:intergenic 35.0%
CCTATGGTGTATAGGATTAA+AGG + chr8_1:91012622-91012641 None:intergenic 35.0%
CCTTTAATCCTATACACCAT+AGG - chr8_1:91012619-91012638 Msa1225560:intron 35.0%
AAACACGTTGAAAACGACAA+AGG - chr8_1:91012658-91012677 Msa1225560:intron 35.0%
! TTTTTCTTACCATGCCTAAG+AGG + chr8_1:91012702-91012721 None:intergenic 35.0%
! GTTTCACACAATGCAAGTTT+TGG - chr8_1:91012810-91012829 Msa1225560:intron 35.0%
! TAGTGTGAAAAGGGAAGTAT+GGG + chr8_1:91012902-91012921 None:intergenic 35.0%
ACACATTACAAGAGAAAGCA+TGG - chr8_1:91013501-91013520 Msa1225560:CDS 35.0%
AGAAAAACTGTGGGAAACTT+TGG - chr8_1:91013592-91013611 Msa1225560:CDS 35.0%
!! CATATCAAGGCTTTTGGAAA+TGG - chr8_1:91013663-91013682 Msa1225560:CDS 35.0%
GGAAATGGACATAAAGCTTA+TGG - chr8_1:91013678-91013697 Msa1225560:CDS 35.0%
CAAGATCAAGATGATGAACA+TGG - chr8_1:91013720-91013739 Msa1225560:CDS 35.0%
! CTTCATGTTTTGTAGGGCTT+AGG + chr8_1:91011526-91011545 None:intergenic 40.0%
TAGATGCAAAGCCACAGTAA+CGG + chr8_1:91011639-91011658 None:intergenic 40.0%
! TTACTGTGGCTTTGCATCTA+GGG - chr8_1:91011639-91011658 Msa1225560:CDS 40.0%
!! CCCCTGCTAATTTTATTTGG+TGG + chr8_1:91011752-91011771 None:intergenic 40.0%
AAATTAGCAGGGGTCAGTAT+TGG - chr8_1:91011759-91011778 Msa1225560:CDS 40.0%
!!! GGCTCATTTTTTACATGCTG+TGG - chr8_1:91012111-91012130 Msa1225560:intron 40.0%
GGGAAGACATAAAATGAGAC+AGG - chr8_1:91012442-91012461 Msa1225560:intron 40.0%
AACTCTAGTACAAACACGCA+TGG - chr8_1:91012480-91012499 Msa1225560:intron 40.0%
TCTTAGTCCCTATGGTGTAT+AGG + chr8_1:91012630-91012649 None:intergenic 40.0%
CATATACATCCTCTTAGGCA+TGG - chr8_1:91012690-91012709 Msa1225560:intron 40.0%
GTAGTGTGAAAAGGGAAGTA+TGG + chr8_1:91012903-91012922 None:intergenic 40.0%
TGTGTTCCTCTTAGAGATTC+TGG + chr8_1:91013375-91013394 None:intergenic 40.0%
CAGGTGCACAACAATAACAT+GGG + chr8_1:91013419-91013438 None:intergenic 40.0%
TCAATGTTGTTCTTGCATCC+AGG + chr8_1:91013438-91013457 None:intergenic 40.0%
!! TCTTTGAGTGGTTTTGCTCT+TGG + chr8_1:91013465-91013484 None:intergenic 40.0%
! TGCAAAGCATTTGCAGTAAG+AGG - chr8_1:91013552-91013571 Msa1225560:CDS 40.0%
AGAACTCACGAGAAAAACTG+TGG - chr8_1:91013582-91013601 Msa1225560:CDS 40.0%
GAACTCACGAGAAAAACTGT+GGG - chr8_1:91013583-91013602 Msa1225560:CDS 40.0%
GATCAAGATGATGAACATGG+TGG - chr8_1:91013723-91013742 Msa1225560:CDS 40.0%
CTATAAAGACAAGACAGCTG+TGG - chr8_1:91013807-91013826 Msa1225560:CDS 40.0%
AAAGGAAGAGCTTCTCTTGG+AGG + chr8_1:91011497-91011516 None:intergenic 45.0%
AGCAAAGGAAGAGCTTCTCT+TGG + chr8_1:91011500-91011519 None:intergenic 45.0%
GTAGGGCTTAGGTTAAGCAA+AGG + chr8_1:91011515-91011534 None:intergenic 45.0%
! AGATGATGATGCCGTTACTG+TGG - chr8_1:91011625-91011644 Msa1225560:CDS 45.0%
! GTTACTGTGGCTTTGCATCT+AGG - chr8_1:91011638-91011657 Msa1225560:CDS 45.0%
TTAGAATCTGAGCAGGGGTA+GGG + chr8_1:91011787-91011806 None:intergenic 45.0%
ATTAGAATCTGAGCAGGGGT+AGG + chr8_1:91011788-91011807 None:intergenic 45.0%
ACCCCTGCTCAGATTCTAAT+CGG - chr8_1:91011788-91011807 Msa1225560:CDS 45.0%
ACCGATTAGAATCTGAGCAG+GGG + chr8_1:91011792-91011811 None:intergenic 45.0%
GACCGATTAGAATCTGAGCA+GGG + chr8_1:91011793-91011812 None:intergenic 45.0%
! AGAGGGCATGAAAACTGTGT+TGG + chr8_1:91011815-91011834 None:intergenic 45.0%
GTAGTTCGGAAGGCAAACAA+GGG + chr8_1:91012561-91012580 None:intergenic 45.0%
AGTAGTTCGGAAGGCAAACA+AGG + chr8_1:91012562-91012581 None:intergenic 45.0%
TAGATGCATATGTGGGGACA+TGG - chr8_1:91013330-91013349 Msa1225560:intron 45.0%
AAGGGACCAGAATCTCTAAG+AGG - chr8_1:91013366-91013385 Msa1225560:intron 45.0%
CCAGGTGCACAACAATAACA+TGG + chr8_1:91013420-91013439 None:intergenic 45.0%
CCATGTTATTGTTGTGCACC+TGG - chr8_1:91013417-91013436 Msa1225560:CDS 45.0%
CATTTGCAGTAAGAGGTGAC+TGG - chr8_1:91013559-91013578 Msa1225560:CDS 45.0%
TCTCTTGGAGGTGGAGATGA+AGG + chr8_1:91011485-91011504 None:intergenic 50.0%
GGACCGATTAGAATCTGAGC+AGG + chr8_1:91011794-91011813 None:intergenic 50.0%
GGGAGTCTTAGCATTGCTGT+TGG + chr8_1:91013399-91013418 None:intergenic 50.0%
GGAAGAGCTTCTCTTGGAGG+TGG + chr8_1:91011494-91011513 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 91011313 91013947 91011313 ID=Msa1225560;Name=Msa1225560
chr8_1 mRNA 91011313 91013947 91011313 ID=Msa1225560-mRNA-1;Parent=Msa1225560;Name=Msa1225560-mRNA-1;_AED=0.01;_eAED=0.01;_QI=58|1|1|1|1|1|2|162|317
chr8_1 exon 91011313 91011927 91011313 ID=Msa1225560-mRNA-1:exon:33194;Parent=Msa1225560-mRNA-1
chr8_1 exon 91013389 91013947 91013389 ID=Msa1225560-mRNA-1:exon:33193;Parent=Msa1225560-mRNA-1
chr8_1 five_prime_UTR 91013890 91013947 91013890 ID=Msa1225560-mRNA-1:five_prime_utr;Parent=Msa1225560-mRNA-1
chr8_1 CDS 91013389 91013889 91013389 ID=Msa1225560-mRNA-1:cds;Parent=Msa1225560-mRNA-1
chr8_1 CDS 91011475 91011927 91011475 ID=Msa1225560-mRNA-1:cds;Parent=Msa1225560-mRNA-1
chr8_1 three_prime_UTR 91011313 91011474 91011313 ID=Msa1225560-mRNA-1:three_prime_utr;Parent=Msa1225560-mRNA-1
Gene Sequence

>Msa1225560

ATGAGTACTCATCCCTACTTCTCCAATGACTTCAATGGTTATTGGTTTGACCTAAATAACCCTCCATTCTATAATTTTCCTTATAGTAACAACATATCTTTTGCATCTTCTCCTTCATCTCCACCTCCAAGAGAAGCTCTTCCTTTGCTTAACCTAAGCCCTACAAAACATGAAGATCTTCTAGAATCTTCCTTTAGTTCCATGGAAATGATGAATATGAAGGAGAAAGAACTAAGCATATCATCAAATTCTTTAGATGATGATGCCGTTACTGTGGCTTTGCATCTAGGGCTTCCAAGTATAAGTTCATCTGATTTAGCTTCTTCAAATATTTACAAAGATGATGAAAAAGTAGTGACTGTTGATTCTTCTGAGTGTCCACCAAATAAAATTAGCAGGGGTCAGTATTGGATCCCTACCCCTGCTCAGATTCTAATCGGTCCAACACAGTTTTCATGCCCTCTTTGTTTCAAGACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATATAGAAAGGGACCAGAATCTCTAAGAGGAACACAACCAACAGCAATGCTAAGACTCCCATGTTATTGTTGTGCACCTGGATGCAAGAACAACATTGATCATCCAAGAGCAAAACCACTCAAAGATTTTAGAACACTTCAAACACATTACAAGAGAAAGCATGGAATAAAGCCATTTATGTGTAGAAAGTGTTGCAAAGCATTTGCAGTAAGAGGTGACTGGAGAACTCACGAGAAAAACTGTGGGAAACTTTGGTATTGTTGTTGTGGGTCCGATTTTAAGCACAAAAGATCACTTAAAGATCATATCAAGGCTTTTGGAAATGGACATAAAGCTTATGGAATTGACGAATGTCTTGATCAAGATCAAGATGATGAACATGGTGGCTCTGAAATTGAGCAAGACAATGAATCTTTTCAGTCATAG

Protein sequence

>Msa1225560

MSTHPYFSNDFNGYWFDLNNPPFYNFPYSNNISFASSPSSPPPREALPLLNLSPTKHEDLLESSFSSMEMMNMKEKELSISSNSLDDDAVTVALHLGLPSISSSDLASSNIYKDDEKVVTVDSSECPPNKISRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCCCGSDFKHKRSLKDHIKAFGNGHKAYGIDECLDQDQDDEHGGSEIEQDNESFQS*