AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0086620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086620 MtrunA17_Chr1g0202411 96.503 286 7 1 1 286 21 303 0.0 555
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086620 AT1G28140.1 71.774 248 63 2 43 283 31 278 1.41e-117 339

Find 94 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTACTTTGCTTGCTTTA+TGG 0.047856 1_2:-67349987 Msa0086620:CDS
CAAGTTTATAACGGCGTTTA+TGG 0.193049 1_2:-67351824 Msa0086620:CDS
AACCTGTACTACATTGTTAT+TGG 0.198954 1_2:+67349544 None:intergenic
AGCGCACTCTGCAAGCATTA+TGG 0.246210 1_2:-67350935 Msa0086620:CDS
ACAATCTTTACAGGTATAAA+AGG 0.268933 1_2:+67349579 None:intergenic
TTATGGGGCCTCGGGGTTCT+TGG 0.285137 1_2:-67350918 Msa0086620:CDS
GAAAGCCTTGATTGAGAAAC+TGG 0.308650 1_2:-67349767 Msa0086620:CDS
CGTCATTGGGTCAGGTGGGT+TGG 0.319339 1_2:-67351000 Msa0086620:CDS
ACCTGTACTACATTGTTATT+GGG 0.329643 1_2:+67349545 None:intergenic
TCATAAGTAATTTACCTTGA+TGG 0.335092 1_2:+67349921 None:intergenic
ATTATTCCTATTCTTCTTCT+CGG 0.344771 1_2:-67350609 Msa0086620:CDS
GACAGCGAAAATCAGAAATA+TGG 0.353072 1_2:-67352017 Msa0086620:exon
GTCATTGGGTCAGGTGGGTT+GGG 0.353231 1_2:-67350999 Msa0086620:CDS
AAATTTGCAGTCCGGTTTGA+TGG 0.360898 1_2:-67350022 Msa0086620:intron
CGCCGTTATAAACTTGTTGT+TGG 0.370560 1_2:+67351831 None:intergenic
GCGCACTCTGCAAGCATTAT+GGG 0.374010 1_2:-67350934 Msa0086620:CDS
TACTTTGCTTGCTTTATGGA+TGG 0.378911 1_2:-67349983 Msa0086620:CDS
CCATCAGCTGTCTGGCTTGT+CGG 0.381851 1_2:-67350825 Msa0086620:CDS
ACTTAGGTCATCGGGCAAAT+AGG 0.385092 1_2:+67351055 None:intergenic
CAAGTTTATGTCTTGGCGGT+CGG 0.386160 1_2:-67351910 Msa0086620:CDS
ACATAGCATACAATCTTTAC+AGG 0.389012 1_2:+67349570 None:intergenic
TATTCTTCTTCTCGGACATC+TGG 0.389731 1_2:-67350601 Msa0086620:intron
TGCAAGCATTATGGGGCCTC+GGG 0.396833 1_2:-67350926 Msa0086620:CDS
CTGCAAGCATTATGGGGCCT+CGG 0.396844 1_2:-67350927 Msa0086620:CDS
TTGTTCCAGTTTCTCAATCA+AGG 0.397711 1_2:+67349762 None:intergenic
AAGTTTATGTCTTGGCGGTC+GGG 0.403259 1_2:-67351909 Msa0086620:CDS
CATAAGTAATTTACCTTGAT+GGG 0.407793 1_2:+67349922 None:intergenic
ACCGACCCAATTCTGATTCT+CGG 0.410553 1_2:+67351878 None:intergenic
CTACATCACCCTTGCCCAAC+CGG 0.413007 1_2:-67350883 Msa0086620:CDS
ATCTTCGGCTTCAACGGTCC+AGG 0.413922 1_2:+67351799 None:intergenic
CCTTCTTCAAGTTTATGTCT+TGG 0.419897 1_2:-67351917 Msa0086620:CDS
CCTTCTCCGAGAATCAGAAT+TGG 0.420118 1_2:-67351884 Msa0086620:CDS
TTGATAACCCATCAGCTGTC+TGG 0.422836 1_2:-67350833 Msa0086620:CDS
GAGTACCTCTTTGACATCTT+CGG 0.430335 1_2:+67351784 None:intergenic
AATTCGAACAAGATTAGAAA+TGG 0.436512 1_2:+67351940 None:intergenic
GGGCTGAGTGAATTTCCTTC+CGG 0.442279 1_2:+67349942 None:intergenic
TGCTACGGCAAGCTAGAAGC+TGG 0.444586 1_2:-67350645 Msa0086620:CDS
GAGAGATTTGAACGTGAAAA+CGG 0.450871 1_2:+67349804 None:intergenic
AGTTCCGTCGTCCATCAAAC+CGG 0.455453 1_2:+67350011 None:intergenic
ATAACGGCGTTTATGGCCCC+TGG 0.459012 1_2:-67351817 Msa0086620:CDS
AGCGTATCACTTAGGTCATC+GGG 0.461109 1_2:+67351047 None:intergenic
ACTTTGCTTGCTTTATGGAT+GGG 0.461719 1_2:-67349982 Msa0086620:CDS
ATTATAAAAGAAAAGTTGTC+AGG 0.464062 1_2:-67349482 Msa0086620:three_prime_UTR
CAGGTTATATCGTACCGATC+AGG 0.483142 1_2:-67351122 Msa0086620:CDS
AGATGTCCGAGAAGAAGAAT+AGG 0.484627 1_2:+67350603 None:intergenic
TTTGACATCTTCGGCTTCAA+CGG 0.489022 1_2:+67351793 None:intergenic
TCTTCAAGTTTATGTCTTGG+CGG 0.493287 1_2:-67351914 Msa0086620:CDS
CTTCTCCGAGAATCAGAATT+GGG 0.500907 1_2:-67351883 Msa0086620:CDS
CTCTCTTATATGAGAACTGC+AGG 0.503204 1_2:+67349625 None:intergenic
TCTTCGGCTTCAACGGTCCA+GGG 0.516093 1_2:+67351800 None:intergenic
TTTGCTTGAGCGTATCACTT+AGG 0.523274 1_2:+67351039 None:intergenic
CCGACAAGCCAGACAGCTGA+TGG 0.523521 1_2:+67350825 None:intergenic
ATCAGAAATATGGCGTTACA+AGG 0.523943 1_2:-67352007 Msa0086620:exon
GAGCGTATCACTTAGGTCAT+CGG 0.524378 1_2:+67351046 None:intergenic
AACCAACAACAAGTTTATAA+CGG 0.529478 1_2:-67351833 Msa0086620:CDS
CATATATACTTACAGTGAGC+AGG 0.537449 1_2:+67349431 None:intergenic
TACCAGCTCCAATACACCCT+GGG 0.538427 1_2:-67349718 Msa0086620:three_prime_UTR
TGGCGGTTTCAATATCTGTA+AGG 0.539090 1_2:-67351967 Msa0086620:CDS
TTTACGTCATTGGGTCAGGT+GGG 0.540791 1_2:-67351004 Msa0086620:CDS
CGGTTGGGCAAGGGTGATGT+AGG 0.542884 1_2:+67350884 None:intergenic
ACCCAATAACAATGTAGTAC+AGG 0.543867 1_2:-67349546 Msa0086620:three_prime_UTR
TTTATTAGCCGGTTGGGCAA+GGG 0.546853 1_2:+67350875 None:intergenic
TCGGTACGGTGTAAAGCGGC+GGG 0.552551 1_2:-67351860 Msa0086620:CDS
CAATTCTGATTCTCGGAGAA+GGG 0.554524 1_2:+67351885 None:intergenic
CCAAGACATAAACTTGAAGA+AGG 0.556172 1_2:+67351917 None:intergenic
CTTGAAACAGGGCTCTGCTA+CGG 0.557285 1_2:-67350660 Msa0086620:intron
CCAATTCTGATTCTCGGAGA+AGG 0.562090 1_2:+67351884 None:intergenic
GTCGGTACGGTGTAAAGCGG+CGG 0.563056 1_2:-67351861 Msa0086620:CDS
TATATCGTACCGATCAGGAT+TGG 0.575057 1_2:-67351117 Msa0086620:CDS
GAAATTCACTCAGCCCATCA+AGG 0.577695 1_2:-67349935 Msa0086620:intron
CGCACTCTGCAAGCATTATG+GGG 0.582516 1_2:-67350933 Msa0086620:CDS
CGAACAAGATTAGAAATGGA+AGG 0.595756 1_2:+67351944 None:intergenic
GAATCAGAATTGGGTCGGTA+CGG 0.606759 1_2:-67351874 Msa0086620:CDS
AGGATTAAGTACTGTTTCTG+TGG 0.608660 1_2:-67351987 Msa0086620:CDS
TCCGAGAATCAGAATTGGGT+CGG 0.617946 1_2:-67351879 Msa0086620:CDS
AATAACAATGTAGTACAGGT+TGG 0.618070 1_2:-67349542 Msa0086620:three_prime_UTR
TTTAATATCAAGGATGACAT+CGG 0.623685 1_2:-67349835 Msa0086620:intron
ATTAAGTACTGTTTCTGTGG+CGG 0.624479 1_2:-67351984 Msa0086620:CDS
TAGGTCATCGGGCAAATAGG+CGG 0.628512 1_2:+67351058 None:intergenic
ATCAGGATTGGTAACAGCTG+CGG 0.633244 1_2:-67351105 Msa0086620:CDS
CGACAAGCCAGACAGCTGAT+GGG 0.633627 1_2:+67350826 None:intergenic
CTTCGGCTTCAACGGTCCAG+GGG 0.636756 1_2:+67351801 None:intergenic
CAGCTGTTACCAATCCTGAT+CGG 0.643027 1_2:+67351108 None:intergenic
CAGTCCGGTTTGATGGACGA+CGG 0.644994 1_2:-67350015 Msa0086620:CDS
GGTGGACTCCTTGAACTCGT+AGG 0.652460 1_2:-67349695 Msa0086620:three_prime_UTR
TGAAGCCGAAGATGTCAAAG+AGG 0.661714 1_2:-67351789 Msa0086620:intron
GCAGTTCTCATATAAGAGAG+AGG 0.662102 1_2:-67349622 Msa0086620:three_prime_UTR
TGGGTCGGTACGGTGTAAAG+CGG 0.668122 1_2:-67351864 Msa0086620:CDS
ATACCAGCTCCAATACACCC+TGG 0.669895 1_2:-67349719 Msa0086620:three_prime_UTR
ACCAGCTCCAATACACCCTG+GGG 0.683177 1_2:-67349717 Msa0086620:three_prime_UTR
GCAAGCATTATGGGGCCTCG+GGG 0.704748 1_2:-67350925 Msa0086620:CDS
TCTTATATGAGAACTGCAGG+CGG 0.723144 1_2:+67349628 None:intergenic
CCAGCTCCAATACACCCTGG+GGG 0.764571 1_2:-67349716 Msa0086620:three_prime_UTR
CAGCTGATCCAAGAACCCCG+AGG 0.791341 1_2:+67350910 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTATTGAATTAATATTAAA+TGG + chr1_2:67350704-67350723 None:intergenic 10.0%
!!! TTTTTTTTTTCAATTAGTTA+AGG - chr1_2:67350937-67350956 Msa0086620:CDS 10.0%
!! AATTAATTATTGACAACTTT+AGG - chr1_2:67349927-67349946 Msa0086620:intron 15.0%
!! AAAATATAAATATGACCAAT+GGG + chr1_2:67350008-67350027 None:intergenic 15.0%
!! AAAAATATAAATATGACCAA+TGG + chr1_2:67350009-67350028 None:intergenic 15.0%
!!! TTATATTTTTAAGAGACATT+TGG - chr1_2:67350019-67350038 Msa0086620:intron 15.0%
!! AATATATCTGATTCAAAATT+TGG - chr1_2:67350055-67350074 Msa0086620:intron 15.0%
!! ATGGTAAAAATAAAAATAGA+TGG + chr1_2:67350685-67350704 None:intergenic 15.0%
!! TAATATTAATTCAATAGAGA+AGG - chr1_2:67350706-67350725 Msa0086620:intron 15.0%
!! AATATTAATTCAATAGAGAA+GGG - chr1_2:67350707-67350726 Msa0086620:intron 15.0%
!! AGAAAAAGATATTATACAAA+TGG + chr1_2:67351375-67351394 None:intergenic 15.0%
!!! ATTTTTTTCGAAAAAAATGA+TGG - chr1_2:67351755-67351774 Msa0086620:intron 15.0%
!!! AAATTGTTATTACTCCATAA+GGG + chr1_2:67349858-67349877 None:intergenic 20.0%
!! ACTTAATGTCTCTTAAAAAT+AGG - chr1_2:67350100-67350119 Msa0086620:intron 20.0%
!!! ATTGATTTTTTTTACGTCAT+TGG - chr1_2:67350412-67350431 Msa0086620:intron 20.0%
!!! TTGATTTTTTTTACGTCATT+GGG - chr1_2:67350413-67350432 Msa0086620:intron 20.0%
!!! TGTATTAAAGTTTTATTAGC+CGG + chr1_2:67350565-67350584 None:intergenic 20.0%
!! AATTATCAAAATCATGAGAA+TGG - chr1_2:67350991-67351010 Msa0086620:CDS 20.0%
!! CATCAAAAGAAATATGATAA+CGG + chr1_2:67351216-67351235 None:intergenic 20.0%
!! ATTATAAAAGAAAAGTTGTC+AGG - chr1_2:67351944-67351963 Msa0086620:CDS 20.0%
! AATTCGAACAAGATTAGAAA+TGG + chr1_2:67349489-67349508 None:intergenic 25.0%
! AACCAACAACAAGTTTATAA+CGG - chr1_2:67349593-67349612 Msa0086620:three_prime_UTR 25.0%
! CTTATAACAGAAATTGATTG+AGG + chr1_2:67349675-67349694 None:intergenic 25.0%
! AACTGAATTTAGAAAACAGA+AGG + chr1_2:67349760-67349779 None:intergenic 25.0%
!! CAAATTGTTATTACTCCATA+AGG + chr1_2:67349859-67349878 None:intergenic 25.0%
! ATGTCTCTTAAAAATAGGAT+CGG - chr1_2:67350105-67350124 Msa0086620:intron 25.0%
! ATTATTCCTATTCTTCTTCT+CGG - chr1_2:67350817-67350836 Msa0086620:CDS 25.0%
!! CATGTTGCCTATTTAATTTA+AGG - chr1_2:67350884-67350903 Msa0086620:CDS 25.0%
! ATGGCTACCTTAAATTAAAT+AGG + chr1_2:67350894-67350913 None:intergenic 25.0%
!! TTTTCAATTAGTTAAGGAGT+TGG - chr1_2:67350943-67350962 Msa0086620:CDS 25.0%
!!! TTTTTTCGATGAAGATCTAA+TGG - chr1_2:67351016-67351035 Msa0086620:CDS 25.0%
! CTATTATTTATTTGAGTCCA+TGG - chr1_2:67351236-67351255 Msa0086620:intron 25.0%
! ACAATAATTTAAGAGTCAAG+AGG + chr1_2:67351274-67351293 None:intergenic 25.0%
! TATTATACAAATGGACCAAT+CGG + chr1_2:67351366-67351385 None:intergenic 25.0%
! CATAAGTAATTTACCTTGAT+GGG + chr1_2:67351507-67351526 None:intergenic 25.0%
! TCATAAGTAATTTACCTTGA+TGG + chr1_2:67351508-67351527 None:intergenic 25.0%
! TAAACACAAATCCAATATCA+GGG + chr1_2:67351575-67351594 None:intergenic 25.0%
! TTAAACACAAATCCAATATC+AGG + chr1_2:67351576-67351595 None:intergenic 25.0%
! TGGATTTGTGTTTAATATCA+AGG - chr1_2:67351581-67351600 Msa0086620:intron 25.0%
! TTTAATATCAAGGATGACAT+CGG - chr1_2:67351591-67351610 Msa0086620:intron 25.0%
! ACAATCTTTACAGGTATAAA+AGG + chr1_2:67351850-67351869 None:intergenic 25.0%
ATACTAACTAACACGTGATA+AGG + chr1_2:67349705-67349724 None:intergenic 30.0%
! ACGTGTTAGTTAGTATTGAA+AGG - chr1_2:67349709-67349728 Msa0086620:three_prime_UTR 30.0%
GGGAAAAGGAATTACAATAA+TGG + chr1_2:67349838-67349857 None:intergenic 30.0%
! TTGTAATTCCTTTTCCCTTA+TGG - chr1_2:67349841-67349860 Msa0086620:intron 30.0%
TTATTACTCCATAAGGGAAA+AGG + chr1_2:67349852-67349871 None:intergenic 30.0%
TCTTAAAAATAGGATCGGAT+CGG - chr1_2:67350110-67350129 Msa0086620:intron 30.0%
TAGTTAGCATTGCATACATA+GGG + chr1_2:67350275-67350294 None:intergenic 30.0%
ATAGTTAGCATTGCATACAT+AGG + chr1_2:67350276-67350295 None:intergenic 30.0%
!!! TAAAGTTTTATTAGCCGGTT+GGG + chr1_2:67350560-67350579 None:intergenic 30.0%
!!! TTAAAGTTTTATTAGCCGGT+TGG + chr1_2:67350561-67350580 None:intergenic 30.0%
TCATCTTGTATTCTTGAAAC+AGG - chr1_2:67350754-67350773 Msa0086620:intron 30.0%
CATCTTGTATTCTTGAAACA+GGG - chr1_2:67350755-67350774 Msa0086620:intron 30.0%
! TGTTTAATAGAGCACTTTAG+AGG + chr1_2:67350866-67350885 None:intergenic 30.0%
AACAAGAACCATATATGCTA+TGG + chr1_2:67350913-67350932 None:intergenic 30.0%
!! TGATAACGGTTATCAATTCA+GGG + chr1_2:67351202-67351221 None:intergenic 30.0%
!! ATGATAACGGTTATCAATTC+AGG + chr1_2:67351203-67351222 None:intergenic 30.0%
!! TTACTCTAAAATTTGCAGTC+CGG - chr1_2:67351396-67351415 Msa0086620:intron 30.0%
AACTTACTTTGCTTGCTTTA+TGG - chr1_2:67351439-67351458 Msa0086620:intron 30.0%
AAAAAATTCCTACGAGTTCA+AGG + chr1_2:67351742-67351761 None:intergenic 30.0%
ACATAGCATACAATCTTTAC+AGG + chr1_2:67351859-67351878 None:intergenic 30.0%
! ACCTGTACTACATTGTTATT+GGG + chr1_2:67351884-67351903 None:intergenic 30.0%
AACCTGTACTACATTGTTAT+TGG + chr1_2:67351885-67351904 None:intergenic 30.0%
AATAACAATGTAGTACAGGT+TGG - chr1_2:67351884-67351903 Msa0086620:CDS 30.0%
! TAAGTTCCATCCAGTTTTTA+TGG - chr1_2:67352030-67352049 Msa0086620:five_prime_UTR 30.0%
GACAGCGAAAATCAGAAATA+TGG - chr1_2:67349409-67349428 Msa0086620:three_prime_UTR 35.0%
ATCAGAAATATGGCGTTACA+AGG - chr1_2:67349419-67349438 Msa0086620:three_prime_UTR 35.0%
!! AGGATTAAGTACTGTTTCTG+TGG - chr1_2:67349439-67349458 Msa0086620:three_prime_UTR 35.0%
!! ATTAAGTACTGTTTCTGTGG+CGG - chr1_2:67349442-67349461 Msa0086620:three_prime_UTR 35.0%
CGAACAAGATTAGAAATGGA+AGG + chr1_2:67349485-67349504 None:intergenic 35.0%
CCAAGACATAAACTTGAAGA+AGG + chr1_2:67349512-67349531 None:intergenic 35.0%
! CCTTCTTCAAGTTTATGTCT+TGG - chr1_2:67349509-67349528 Msa0086620:three_prime_UTR 35.0%
! TCTTCAAGTTTATGTCTTGG+CGG - chr1_2:67349512-67349531 Msa0086620:three_prime_UTR 35.0%
CAAGTTTATAACGGCGTTTA+TGG - chr1_2:67349602-67349621 Msa0086620:three_prime_UTR 35.0%
ACAGAAATTGATTGAGGAGA+AGG + chr1_2:67349669-67349688 None:intergenic 35.0%
TAAATATGACCAATGGGAGT+AGG + chr1_2:67350002-67350021 None:intergenic 35.0%
!! GTCACAAAAGTTGATGTATC+TGG + chr1_2:67350082-67350101 None:intergenic 35.0%
! CTTTTAAGCTGCAACTGTAT+AGG + chr1_2:67350241-67350260 None:intergenic 35.0%
! AGTTGCAGCTTAAAAGCTTT+TGG - chr1_2:67350245-67350264 Msa0086620:intron 35.0%
!!! TTTTTTTACGTCATTGGGTC+AGG - chr1_2:67350418-67350437 Msa0086620:intron 35.0%
!! TTTGACAGGACTTGTTTTCA+AGG - chr1_2:67350639-67350658 Msa0086620:CDS 35.0%
TAAGGTAGCCATAGCATATA+TGG - chr1_2:67350902-67350921 Msa0086620:CDS 35.0%
TTATTGTCACCAATACCGAT+TGG - chr1_2:67351348-67351367 Msa0086620:intron 35.0%
TACTTTGCTTGCTTTATGGA+TGG - chr1_2:67351443-67351462 Msa0086620:intron 35.0%
ACTTTGCTTGCTTTATGGAT+GGG - chr1_2:67351444-67351463 Msa0086620:intron 35.0%
! GGTCTTTTTGTGATATTTGC+CGG - chr1_2:67351465-67351484 Msa0086620:intron 35.0%
! TTTTTGTGATATTTGCCGGA+AGG - chr1_2:67351469-67351488 Msa0086620:intron 35.0%
AATATCAGGGAATTTATGCG+GGG + chr1_2:67351562-67351581 None:intergenic 35.0%
CAATATCAGGGAATTTATGC+GGG + chr1_2:67351563-67351582 None:intergenic 35.0%
CCAATATCAGGGAATTTATG+CGG + chr1_2:67351564-67351583 None:intergenic 35.0%
GAGAGATTTGAACGTGAAAA+CGG + chr1_2:67351625-67351644 None:intergenic 35.0%
TTGTTCCAGTTTCTCAATCA+AGG + chr1_2:67351667-67351686 None:intergenic 35.0%
ACCCAATAACAATGTAGTAC+AGG - chr1_2:67351880-67351899 Msa0086620:CDS 35.0%
CATATATACTTACAGTGAGC+AGG + chr1_2:67351998-67352017 None:intergenic 35.0%
! ATTTCTGATTTTCGCTGTCG+AGG + chr1_2:67349408-67349427 None:intergenic 40.0%
TGGCGGTTTCAATATCTGTA+AGG - chr1_2:67349459-67349478 Msa0086620:three_prime_UTR 40.0%
CAATTCTGATTCTCGGAGAA+GGG + chr1_2:67349544-67349563 None:intergenic 40.0%
CTTCTCCGAGAATCAGAATT+GGG - chr1_2:67349543-67349562 Msa0086620:three_prime_UTR 40.0%
!! CGCCGTTATAAACTTGTTGT+TGG + chr1_2:67349598-67349617 None:intergenic 40.0%
TTTGACATCTTCGGCTTCAA+CGG + chr1_2:67349636-67349655 None:intergenic 40.0%
GAGTACCTCTTTGACATCTT+CGG + chr1_2:67349645-67349664 None:intergenic 40.0%
TCAACTATACCTACTCCCAT+TGG - chr1_2:67349990-67350009 Msa0086620:CDS 40.0%
! TATATCGTACCGATCAGGAT+TGG - chr1_2:67350309-67350328 Msa0086620:intron 40.0%
TTTGCTTGAGCGTATCACTT+AGG + chr1_2:67350390-67350409 None:intergenic 40.0%
!! ACAGGACTTGTTTTCAAGGA+AGG - chr1_2:67350643-67350662 Msa0086620:CDS 40.0%
AGATGTCCGAGAAGAAGAAT+AGG + chr1_2:67350826-67350845 None:intergenic 40.0%
TATTCTTCTTCTCGGACATC+TGG - chr1_2:67350825-67350844 Msa0086620:CDS 40.0%
! GCTAGAAAGAATTTGGGTTC+TGG + chr1_2:67351074-67351093 None:intergenic 40.0%
TGCAGGGCTAGAAAGAATTT+GGG + chr1_2:67351080-67351099 None:intergenic 40.0%
TTGCAGGGCTAGAAAGAATT+TGG + chr1_2:67351081-67351100 None:intergenic 40.0%
AACATATCCAACCACCTAGT+GGG - chr1_2:67351099-67351118 Msa0086620:CDS 40.0%
ATCAGTGCAATCATGATAGG+AGG + chr1_2:67351172-67351191 None:intergenic 40.0%
GAGATCAGTGCAATCATGAT+AGG + chr1_2:67351175-67351194 None:intergenic 40.0%
TTTAAGAGTCAAGAGGACGA+TGG + chr1_2:67351267-67351286 None:intergenic 40.0%
ATCCACACTCACTTCTTGAT+CGG + chr1_2:67351326-67351345 None:intergenic 40.0%
ACAAATGGACCAATCGGTAT+TGG + chr1_2:67351360-67351379 None:intergenic 40.0%
! AAATTTGCAGTCCGGTTTGA+TGG - chr1_2:67351404-67351423 Msa0086620:intron 40.0%
CCGCATAAATTCCCTGATAT+TGG - chr1_2:67351561-67351580 Msa0086620:intron 40.0%
! AGGCTTTCTTTTCGTCATCA+CGG + chr1_2:67351647-67351666 None:intergenic 40.0%
GAAAGCCTTGATTGAGAAAC+TGG - chr1_2:67351659-67351678 Msa0086620:intron 40.0%
TCTTATATGAGAACTGCAGG+CGG + chr1_2:67351801-67351820 None:intergenic 40.0%
CTCTCTTATATGAGAACTGC+AGG + chr1_2:67351804-67351823 None:intergenic 40.0%
GCAGTTCTCATATAAGAGAG+AGG - chr1_2:67351804-67351823 Msa0086620:CDS 40.0%
ACGCTTCCATAAAAACTGGA+TGG + chr1_2:67352039-67352058 None:intergenic 40.0%
CAACACGCTTCCATAAAAAC+TGG + chr1_2:67352043-67352062 None:intergenic 40.0%
!! CAGTTTTTATGGAAGCGTGT+TGG - chr1_2:67352041-67352060 Msa0086620:five_prime_UTR 40.0%
CAAGTTTATGTCTTGGCGGT+CGG - chr1_2:67349516-67349535 Msa0086620:three_prime_UTR 45.0%
AAGTTTATGTCTTGGCGGTC+GGG - chr1_2:67349517-67349536 Msa0086620:three_prime_UTR 45.0%
CCAATTCTGATTCTCGGAGA+AGG + chr1_2:67349545-67349564 None:intergenic 45.0%
CCTTCTCCGAGAATCAGAAT+TGG - chr1_2:67349542-67349561 Msa0086620:three_prime_UTR 45.0%
TCCGAGAATCAGAATTGGGT+CGG - chr1_2:67349547-67349566 Msa0086620:three_prime_UTR 45.0%
ACCGACCCAATTCTGATTCT+CGG + chr1_2:67349551-67349570 None:intergenic 45.0%
GAATCAGAATTGGGTCGGTA+CGG - chr1_2:67349552-67349571 Msa0086620:three_prime_UTR 45.0%
TGAAGCCGAAGATGTCAAAG+AGG - chr1_2:67349637-67349656 Msa0086620:three_prime_UTR 45.0%
AGCCTGACTCTACTCGAATT+GGG + chr1_2:67349888-67349907 None:intergenic 45.0%
TAGCCTGACTCTACTCGAAT+TGG + chr1_2:67349889-67349908 None:intergenic 45.0%
CACACTACACTGTGTTTGCA+GGG + chr1_2:67350193-67350212 None:intergenic 45.0%
ACACACTACACTGTGTTTGC+AGG + chr1_2:67350194-67350213 None:intergenic 45.0%
TGCAATGCTAACTATGCCCA+TGG - chr1_2:67350281-67350300 Msa0086620:intron 45.0%
GGTACGATATAACCTGCCAT+GGG + chr1_2:67350300-67350319 None:intergenic 45.0%
! CAGGTTATATCGTACCGATC+AGG - chr1_2:67350304-67350323 Msa0086620:intron 45.0%
CAGCTGTTACCAATCCTGAT+CGG + chr1_2:67350321-67350340 None:intergenic 45.0%
! ATCAGGATTGGTAACAGCTG+CGG - chr1_2:67350321-67350340 Msa0086620:intron 45.0%
ACTTAGGTCATCGGGCAAAT+AGG + chr1_2:67350374-67350393 None:intergenic 45.0%
AGCGTATCACTTAGGTCATC+GGG + chr1_2:67350382-67350401 None:intergenic 45.0%
GAGCGTATCACTTAGGTCAT+CGG + chr1_2:67350383-67350402 None:intergenic 45.0%
! TTTTACGTCATTGGGTCAGG+TGG - chr1_2:67350421-67350440 Msa0086620:intron 45.0%
TTTACGTCATTGGGTCAGGT+GGG - chr1_2:67350422-67350441 Msa0086620:intron 45.0%
TTTATTAGCCGGTTGGGCAA+GGG + chr1_2:67350554-67350573 None:intergenic 45.0%
! TTTTATTAGCCGGTTGGGCA+AGG + chr1_2:67350555-67350574 None:intergenic 45.0%
! TTGATAACCCATCAGCTGTC+TGG - chr1_2:67350593-67350612 Msa0086620:intron 45.0%
CCTGTCAAAGCAGCAAAAAG+AGG + chr1_2:67350628-67350647 None:intergenic 45.0%
!!! CCTCTTTTTGCTGCTTTGAC+AGG - chr1_2:67350625-67350644 Msa0086620:CDS 45.0%
AGGTGGTTGGATATGTTGCA+GGG + chr1_2:67351096-67351115 None:intergenic 45.0%
TAGGTGGTTGGATATGTTGC+AGG + chr1_2:67351097-67351116 None:intergenic 45.0%
CAACATATCCAACCACCTAG+TGG - chr1_2:67351098-67351117 Msa0086620:CDS 45.0%
ACATATCCAACCACCTAGTG+GGG - chr1_2:67351100-67351119 Msa0086620:CDS 45.0%
GGAGGCTGTTACTAGCAATA+AGG + chr1_2:67351154-67351173 None:intergenic 45.0%
AGAGGACGATGGAAAATCCA+TGG + chr1_2:67351256-67351275 None:intergenic 45.0%
CGGTGAAGGTAAACGAAATG+CGG + chr1_2:67351306-67351325 None:intergenic 45.0%
ACTCACTTCTTGATCGGTGA+AGG + chr1_2:67351320-67351339 None:intergenic 45.0%
GAAATTCACTCAGCCCATCA+AGG - chr1_2:67351491-67351510 Msa0086620:intron 45.0%
!!! TTTTATAATTTAATTAAGAT+TGG + chr1_2:67351933-67351952 None:intergenic 5.0%
GACCCAATTCGAGTAGAGTC+AGG - chr1_2:67349883-67349902 Msa0086620:intron 50.0%
ATGCTAACTATGCCCATGGC+AGG - chr1_2:67350285-67350304 Msa0086620:intron 50.0%
CGGTACGATATAACCTGCCA+TGG + chr1_2:67350301-67350320 None:intergenic 50.0%
TAGGTCATCGGGCAAATAGG+CGG + chr1_2:67350371-67350390 None:intergenic 50.0%
AGCGCACTCTGCAAGCATTA+TGG - chr1_2:67350491-67350510 Msa0086620:intron 50.0%
GCGCACTCTGCAAGCATTAT+GGG - chr1_2:67350492-67350511 Msa0086620:intron 50.0%
CGCACTCTGCAAGCATTATG+GGG - chr1_2:67350493-67350512 Msa0086620:intron 50.0%
CTTGAAACAGGGCTCTGCTA+CGG - chr1_2:67350766-67350785 Msa0086620:intron 50.0%
CACCGATCAAGAAGTGAGTG+TGG - chr1_2:67351321-67351340 Msa0086620:intron 50.0%
AGTTCCGTCGTCCATCAAAC+CGG + chr1_2:67351418-67351437 None:intergenic 50.0%
GGGCTGAGTGAATTTCCTTC+CGG + chr1_2:67351487-67351506 None:intergenic 50.0%
ATACCAGCTCCAATACACCC+TGG - chr1_2:67351707-67351726 Msa0086620:intron 50.0%
TACCAGCTCCAATACACCCT+GGG - chr1_2:67351708-67351727 Msa0086620:intron 50.0%
TGGGTCGGTACGGTGTAAAG+CGG - chr1_2:67349562-67349581 Msa0086620:three_prime_UTR 55.0%
ATAACGGCGTTTATGGCCCC+TGG - chr1_2:67349609-67349628 Msa0086620:three_prime_UTR 55.0%
TCTTCGGCTTCAACGGTCCA+GGG + chr1_2:67349629-67349648 None:intergenic 55.0%
ATCTTCGGCTTCAACGGTCC+AGG + chr1_2:67349630-67349649 None:intergenic 55.0%
! GTCATTGGGTCAGGTGGGTT+GGG - chr1_2:67350427-67350446 Msa0086620:intron 55.0%
CTGCAAGCATTATGGGGCCT+CGG - chr1_2:67350499-67350518 Msa0086620:intron 55.0%
TGCAAGCATTATGGGGCCTC+GGG - chr1_2:67350500-67350519 Msa0086620:intron 55.0%
CTACATCACCCTTGCCCAAC+CGG - chr1_2:67350543-67350562 Msa0086620:intron 55.0%
CGACAAGCCAGACAGCTGAT+GGG + chr1_2:67350603-67350622 None:intergenic 55.0%
! CCATCAGCTGTCTGGCTTGT+CGG - chr1_2:67350601-67350620 Msa0086620:intron 55.0%
TGCTACGGCAAGCTAGAAGC+TGG - chr1_2:67350781-67350800 Msa0086620:intron 55.0%
TATCCAACCACCTAGTGGGG+TGG - chr1_2:67351103-67351122 Msa0086620:CDS 55.0%
TCATCTGCAGCCCTGCAGAT+TGG + chr1_2:67351130-67351149 None:intergenic 55.0%
! CAGTCCGGTTTGATGGACGA+CGG - chr1_2:67351411-67351430 Msa0086620:intron 55.0%
ACCAGCTCCAATACACCCTG+GGG - chr1_2:67351709-67351728 Msa0086620:intron 55.0%
! GGTGGACTCCTTGAACTCGT+AGG - chr1_2:67351731-67351750 Msa0086620:intron 55.0%
GTCGGTACGGTGTAAAGCGG+CGG - chr1_2:67349565-67349584 Msa0086620:three_prime_UTR 60.0%
TCGGTACGGTGTAAAGCGGC+GGG - chr1_2:67349566-67349585 Msa0086620:three_prime_UTR 60.0%
CTTCGGCTTCAACGGTCCAG+GGG + chr1_2:67349628-67349647 None:intergenic 60.0%
CGTCATTGGGTCAGGTGGGT+TGG - chr1_2:67350426-67350445 Msa0086620:intron 60.0%
GCAAGCATTATGGGGCCTCG+GGG - chr1_2:67350501-67350520 Msa0086620:intron 60.0%
TTATGGGGCCTCGGGGTTCT+TGG - chr1_2:67350508-67350527 Msa0086620:intron 60.0%
CAGCTGATCCAAGAACCCCG+AGG + chr1_2:67350519-67350538 None:intergenic 60.0%
CGGTTGGGCAAGGGTGATGT+AGG + chr1_2:67350545-67350564 None:intergenic 60.0%
CCGACAAGCCAGACAGCTGA+TGG + chr1_2:67350604-67350623 None:intergenic 60.0%
! GATTGGTCCACCCCACTAGG+TGG + chr1_2:67351113-67351132 None:intergenic 60.0%
! GCAGATTGGTCCACCCCACT+AGG + chr1_2:67351116-67351135 None:intergenic 60.0%
AGTGGGGTGGACCAATCTGC+AGG - chr1_2:67351116-67351135 Msa0086620:CDS 60.0%
GTGGGGTGGACCAATCTGCA+GGG - chr1_2:67351117-67351136 Msa0086620:CDS 60.0%
CCAGCTCCAATACACCCTGG+GGG - chr1_2:67351710-67351729 Msa0086620:intron 60.0%
AGTCCACCCCCAGGGTGTAT+TGG + chr1_2:67351719-67351738 None:intergenic 60.0%
GTTCAAGGAGTCCACCCCCA+GGG + chr1_2:67351727-67351746 None:intergenic 60.0%
AGTTCAAGGAGTCCACCCCC+AGG + chr1_2:67351728-67351747 None:intergenic 60.0%
GGTCCACCCCACTAGGTGGT+TGG + chr1_2:67351109-67351128 None:intergenic 65.0%
CCCCCAGGGTGTATTGGAGC+TGG + chr1_2:67351713-67351732 None:intergenic 65.0%
GCTCCAATACACCCTGGGGG+TGG - chr1_2:67351713-67351732 Msa0086620:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 67349374 67352074 67349374 ID=Msa0086620;Name=Msa0086620
chr1_2 mRNA 67349374 67352074 67349374 ID=Msa0086620-mRNA-1;Parent=Msa0086620;Name=Msa0086620-mRNA-1;_AED=0.15;_eAED=0.15;_QI=54|1|1|1|1|1|5|370|286
chr1_2 exon 67349374 67349845 67349374 ID=Msa0086620-mRNA-1:exon:22835;Parent=Msa0086620-mRNA-1
chr1_2 exon 67349936 67350034 67349936 ID=Msa0086620-mRNA-1:exon:22834;Parent=Msa0086620-mRNA-1
chr1_2 exon 67350602 67350672 67350602 ID=Msa0086620-mRNA-1:exon:22833;Parent=Msa0086620-mRNA-1
chr1_2 exon 67350784 67351141 67350784 ID=Msa0086620-mRNA-1:exon:22832;Parent=Msa0086620-mRNA-1
chr1_2 exon 67351790 67352074 67351790 ID=Msa0086620-mRNA-1:exon:22831;Parent=Msa0086620-mRNA-1
chr1_2 five_prime_UTR 67352021 67352074 67352021 ID=Msa0086620-mRNA-1:five_prime_utr;Parent=Msa0086620-mRNA-1
chr1_2 CDS 67351790 67352020 67351790 ID=Msa0086620-mRNA-1:cds;Parent=Msa0086620-mRNA-1
chr1_2 CDS 67350784 67351141 67350784 ID=Msa0086620-mRNA-1:cds;Parent=Msa0086620-mRNA-1
chr1_2 CDS 67350602 67350672 67350602 ID=Msa0086620-mRNA-1:cds;Parent=Msa0086620-mRNA-1
chr1_2 CDS 67349936 67350034 67349936 ID=Msa0086620-mRNA-1:cds;Parent=Msa0086620-mRNA-1
chr1_2 CDS 67349744 67349845 67349744 ID=Msa0086620-mRNA-1:cds;Parent=Msa0086620-mRNA-1
chr1_2 three_prime_UTR 67349374 67349743 67349374 ID=Msa0086620-mRNA-1:three_prime_utr;Parent=Msa0086620-mRNA-1
Gene Sequence

>Msa0086620

ATGGCGTTACAAGGATTAAGTACTGTTTCTGTGGCGGTTTCAATATCTGTAAGGCCTTCCATTTCTAATCTTGTTCGAATTCCTTCTTCAAGTTTATGTCTTGGCGGTCGGGTCCCTTCTCCGAGAATCAGAATTGGGTCGGTACGGTGTAAAGCGGCGGGAGAAAACCAACAACAAGTTTATAACGGCGTTTATGGCCCCTGGACCGTTGAAGCCGAAGATGTCAAAGAGGTTATATCGTACCGATCAGGATTGGTAACAGCTGCGGCATCGTTCGTCATCGCTGCATCTGCCGCCTATTTGCCCGATGACCTAAGTGATACGCTCAAGCAAAACATTGATTTTTTTTACGTCATTGGGTCAGGTGGGTTGGGTTTATCATTATTCTTGATTCATATCTATGTGACTGAAATCAAGCGCACTCTGCAAGCATTATGGGGCCTCGGGGTTCTTGGATCAGCTGCAACCTACATCACCCTTGCCCAACCGGCTAATAAAACTTTAATACAGTATGTTATTGATAACCCATCAGCTGTCTGGCTTGTCGGTCCTCTTTTTGCTGCTTTGACAGGACTTGTTTTCAAGGAAGGGCTCTGCTACGGCAAGCTAGAAGCTGGAGCACTCACGTTTATTATTCCTATTCTTCTTCTCGGACATCTGTCCGGTTTGATGGACGACGGAACTAAACTTACTTTGCTTGCTTTATGGATGGGTCTTTTTGTGATATTTGCCGGAAGGAAATTCACTCAGCCCATCAAGGATGACATCGGTGACAAGTCCGTTTTCACGTTCAAATCTCTCCGTGATGACGAAAAGAAAGCCTTGATTGAGAAACTGGAACAACAAAAAACTCAGTATTAA

Protein sequence

>Msa0086620

MALQGLSTVSVAVSISVRPSISNLVRIPSSSLCLGGRVPSPRIRIGSVRCKAAGENQQQVYNGVYGPWTVEAEDVKEVISYRSGLVTAAASFVIAASAAYLPDDLSDTLKQNIDFFYVIGSGGLGLSLFLIHIYVTEIKRTLQALWGLGVLGSAATYITLAQPANKTLIQYVIDNPSAVWLVGPLFAALTGLVFKEGLCYGKLEAGALTFIIPILLLGHLSGLMDDGTKLTLLALWMGLFVIFAGRKFTQPIKDDIGDKSVFTFKSLRDDEKKALIEKLEQQKTQY*