AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1413360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413360 MtrunA17_Chr4g0076941 96.074 484 11 3 1 482 1 478 0.0 964
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413360 AT2G23390.1 64.073 437 148 4 47 481 39 468 0.0 598
Msa1413360 AT2G23390.2 57.877 292 114 4 47 336 39 323 4.06e-118 350

Find 108 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATGCTTCTTCATTGTTT+TGG 0.187588 tig0024026:+15781 Msa1413360:CDS
TATCTCCTCCGATAAGATTT+AGG 0.198654 tig0024026:-17769 None:intergenic
TTCATCCTTTATGACAAAAT+TGG 0.214692 tig0024026:+20037 Msa1413360:three_prime_UTR
TATCAAATACTATTATTTAA+TGG 0.223800 tig0024026:-19999 None:intergenic
TCCTAAAATCTTCATCAATA+AGG 0.250782 tig0024026:-18575 None:intergenic
ATCGGAGGAGATACTTTGTT+TGG 0.255198 tig0024026:+17779 Msa1413360:CDS
ATCAGTTGTGTTCCTGTAAA+AGG 0.287829 tig0024026:-17536 None:intergenic
GATTCCATTGTGAACATAAC+TGG 0.293483 tig0024026:+20103 Msa1413360:three_prime_UTR
ATGAAACTCTTGCGTGATTC+TGG 0.301919 tig0024026:+19838 Msa1413360:CDS
TACTTTGTTTGGGCGCCTAT+GGG 0.320826 tig0024026:+17790 Msa1413360:CDS
TGGACTTGAAGCATAATAAA+AGG 0.322434 tig0024026:+16501 Msa1413360:CDS
CTTCATTGTTTCTGCTATCA+AGG 0.339354 tig0024026:+16325 Msa1413360:CDS
AACAGTAGAAGCAGGAGCTC+AGG 0.354032 tig0024026:+18497 Msa1413360:CDS
ATCTCCTCCGATAAGATTTA+GGG 0.357422 tig0024026:-17768 None:intergenic
ATACTTTGTTTGGGCGCCTA+TGG 0.360153 tig0024026:+17789 Msa1413360:CDS
ACTATCCTCTTCTTCTGTTA+AGG 0.370385 tig0024026:+16052 Msa1413360:CDS
TTCTTCAGATTCTGTTGTGC+TGG 0.371658 tig0024026:-15883 None:intergenic
CTCTTCTTCTGTTAAGGAAA+AGG 0.378605 tig0024026:+16058 Msa1413360:CDS
TAACTTAGGATAATAAGAAT+TGG 0.381000 tig0024026:-16222 None:intergenic
CCTCCGCGGTTATGAAATAA+AGG 0.384557 tig0024026:+16580 Msa1413360:CDS
GCGTGATTCTGGTCCTTTCA+AGG 0.412822 tig0024026:+19849 Msa1413360:CDS
AGAAAAGCATGTGATAGAAA+TGG 0.417932 tig0024026:-16017 None:intergenic
TCGGAGGAGATACTTTGTTT+GGG 0.421122 tig0024026:+17780 Msa1413360:CDS
AAGATCCTTGGACCGGTGAC+AGG 0.427977 tig0024026:-16266 None:intergenic
TCTTCTTCTGTTAAGGAAAA+GGG 0.430079 tig0024026:+16059 Msa1413360:CDS
AAGTATATACACACATTGGC+AGG 0.435627 tig0024026:+19887 Msa1413360:three_prime_UTR
TTTAGTTCGTGAATCTTCTC+AGG 0.441303 tig0024026:+18614 Msa1413360:CDS
TGATACTGCATTCCAATCCT+AGG 0.444656 tig0024026:-16437 None:intergenic
GTTCCTGTAAAAGGTGTAGA+AGG 0.446583 tig0024026:-17527 None:intergenic
CTCAACAAGGTTTCCTCCCT+AGG 0.446994 tig0024026:+16420 Msa1413360:CDS
GTCCCCTTCACCCCTGTCAC+CGG 0.447336 tig0024026:+16254 Msa1413360:CDS
CAAGGTTTCCTCCCTAGGAT+TGG 0.453306 tig0024026:+16425 Msa1413360:CDS
ATAATAGTATTTGATACGTT+GGG 0.458271 tig0024026:+20006 Msa1413360:three_prime_UTR
TGGACCGGTGACAGGGGTGA+AGG 0.472861 tig0024026:-16258 None:intergenic
GCAGGTGCCCTAAATCTTAT+CGG 0.472899 tig0024026:+17761 Msa1413360:CDS
CATGCATCCCATTGGGTGGA+TGG 0.473633 tig0024026:-15957 None:intergenic
AACGAATTCACCATAGGAAT+GGG 0.478774 tig0024026:-16156 None:intergenic
TACAGGACACCTTCCTTGAA+AGG 0.480946 tig0024026:-19862 None:intergenic
CCTTAGCGACGATGTGGTGT+GGG 0.483870 tig0024026:-16088 None:intergenic
GCATGTGCTCTTGATGCTAC+AGG 0.485050 tig0024026:+15975 Msa1413360:CDS
ACTTTGTTTGGGCGCCTATG+GGG 0.488318 tig0024026:+17791 Msa1413360:CDS
AATAATAGTATTTGATACGT+TGG 0.492414 tig0024026:+20005 Msa1413360:three_prime_UTR
GGGACACAGGATTGTAACTT+AGG 0.494260 tig0024026:-16236 None:intergenic
TGGCGAGGAGTGAGGGGTGA+TGG 0.494600 tig0024026:+15629 Msa1413360:exon
TGCAACGTGGCGAGGAGTGA+GGG 0.495207 tig0024026:+15622 Msa1413360:five_prime_UTR
AGAAATGGATTGAACTTGTC+TGG 0.496865 tig0024026:-16002 None:intergenic
AATCTTCATCAATAAGGTAA+TGG 0.498534 tig0024026:-18569 None:intergenic
CAAGAGCACATGCATCCCAT+TGG 0.498784 tig0024026:-15965 None:intergenic
AAACGAATTCACCATAGGAA+TGG 0.502628 tig0024026:-16157 None:intergenic
AGATATTCCATCCACCCAAT+GGG 0.507877 tig0024026:+15950 Msa1413360:CDS
AAGAGCACATGCATCCCATT+GGG 0.508867 tig0024026:-15964 None:intergenic
GGACCGGTGACAGGGGTGAA+GGG 0.511776 tig0024026:-16257 None:intergenic
GGATTGGAATGCAGTATCAC+TGG 0.516565 tig0024026:+16441 Msa1413360:CDS
TGTATTGGAAGGCAAAGCAC+TGG 0.517699 tig0024026:+17500 Msa1413360:intron
ACAGTAGAAGCAGGAGCTCA+GGG 0.519444 tig0024026:+18498 Msa1413360:CDS
AATCTTAAAACAGTAGAAGC+AGG 0.528907 tig0024026:+18489 Msa1413360:CDS
CTTTGTTTGGGCGCCTATGG+GGG 0.531740 tig0024026:+17792 Msa1413360:CDS
CAGATATTCCATCCACCCAA+TGG 0.533439 tig0024026:+15949 Msa1413360:CDS
AGTAAATTTGCAACGTGGCG+AGG 0.533665 tig0024026:+15614 None:intergenic
TGTGTGTATATACTTTCTAC+AGG 0.534692 tig0024026:-19879 None:intergenic
GACCGGTGACAGGGGTGAAG+GGG 0.538489 tig0024026:-16256 None:intergenic
TGGCAGCTATATGTTGTCAC+TGG 0.539979 tig0024026:-18549 None:intergenic
TATCTCAAGACCCATTCCTA+TGG 0.542512 tig0024026:+16146 Msa1413360:CDS
TCACCCCTGTCACCGGTCCA+AGG 0.547400 tig0024026:+16261 Msa1413360:CDS
TCCTTAGCGACGATGTGGTG+TGG 0.549897 tig0024026:-16089 None:intergenic
GATTCTGGTCCTTTCAAGGA+AGG 0.553359 tig0024026:+19853 Msa1413360:CDS
GACAATGAGGAACTAGTAGC+AGG 0.554102 tig0024026:+17743 Msa1413360:CDS
GTGTTACGAAGTAAGATCCT+TGG 0.554201 tig0024026:-16278 None:intergenic
AAAATTAGTATAGTTGCGGT+TGG 0.560859 tig0024026:-16465 None:intergenic
AGATCCTTGGACCGGTGACA+GGG 0.562433 tig0024026:-16265 None:intergenic
CCCACACCACATCGTCGCTA+AGG 0.564713 tig0024026:+16088 Msa1413360:CDS
CATCAAAATTAGTATAGTTG+CGG 0.572132 tig0024026:-16469 None:intergenic
TTGCAACGTGGCGAGGAGTG+AGG 0.574434 tig0024026:+15621 Msa1413360:five_prime_UTR
GAAGATTTGCGATGATGAGA+CGG 0.577972 tig0024026:-15696 None:intergenic
GTATTGGAAGGCAAAGCACT+GGG 0.581666 tig0024026:+17501 Msa1413360:intron
CTTTATGACAAAATTGGAGA+CGG 0.585341 tig0024026:+20043 Msa1413360:three_prime_UTR
GAATGGGTCTTGAGATAGAG+AGG 0.593847 tig0024026:-16140 None:intergenic
GACAGGGGTGAAGGGGACAC+AGG 0.595023 tig0024026:-16249 None:intergenic
CTTCTGTTAAGGAAAAGGGA+TGG 0.599556 tig0024026:+16063 Msa1413360:CDS
GATACTGCATTCCAATCCTA+GGG 0.601582 tig0024026:-16436 None:intergenic
ACGAAGTAAGATCCTTGGAC+CGG 0.613289 tig0024026:-16273 None:intergenic
GTGATGGCAGCAGTAGCGAT+AGG 0.613749 tig0024026:+15645 Msa1413360:exon
AGCACATGCATCCCATTGGG+TGG 0.614598 tig0024026:-15961 None:intergenic
GCAACGTGGCGAGGAGTGAG+GGG 0.622978 tig0024026:+15623 Msa1413360:five_prime_UTR
TTTCAGAGGGAAAAGTGACA+TGG 0.623878 tig0024026:-16379 None:intergenic
TATTGTTGCTGAAGACAATG+AGG 0.626085 tig0024026:+17730 Msa1413360:CDS
GGGGTACTCCTTTCCTGACG+AGG 0.627955 tig0024026:+17660 Msa1413360:CDS
TGTATGTACAGTTGAATCAG+TGG 0.630123 tig0024026:+19976 Msa1413360:three_prime_UTR
AGTATATACACACATTGGCA+GGG 0.630667 tig0024026:+19888 Msa1413360:three_prime_UTR
TAGAAAGTATATACACACAT+TGG 0.632394 tig0024026:+19883 Msa1413360:exon
GAATATCCTTAGCGACGATG+TGG 0.635094 tig0024026:-16094 None:intergenic
TGGCACAAATTCACTCAACA+AGG 0.637208 tig0024026:+16407 Msa1413360:CDS
CAGCAGTAGCGATAGGAGTG+AGG 0.642392 tig0024026:+15652 Msa1413360:CDS
GATACGTCAAGAGCGCAAGA+AGG 0.642401 tig0024026:+16529 Msa1413360:CDS
GGTGAACATAAGATTGAGCG+TGG 0.646705 tig0024026:+18519 Msa1413360:CDS
GGGTACTCCTTTCCTGACGA+GGG 0.651005 tig0024026:+17661 Msa1413360:CDS
GATCCTTGGACCGGTGACAG+GGG 0.654306 tig0024026:-16264 None:intergenic
CTTAGCGACGATGTGGTGTG+GGG 0.656713 tig0024026:-16087 None:intergenic
TTGATTATGAAACGCCTCCG+CGG 0.657077 tig0024026:+16566 Msa1413360:CDS
AGAGGGAAAAGTGACATGGA+AGG 0.667089 tig0024026:-16375 None:intergenic
GAAGGAAGAAAGTTGAGACA+TGG 0.667244 tig0024026:-16357 None:intergenic
CCTTTATTTCATAACCGCGG+AGG 0.676519 tig0024026:-16580 None:intergenic
ATACCTTTATTTCATAACCG+CGG 0.679434 tig0024026:-16583 None:intergenic
ACTGCATTCCAATCCTAGGG+AGG 0.691555 tig0024026:-16433 None:intergenic
TGTGCTCTTGATGCTACAGG+AGG 0.695186 tig0024026:+15978 Msa1413360:CDS
TGTACCAGTTATGTTCACAA+TGG 0.704578 tig0024026:-20107 None:intergenic
GGTGCCCTAAATCTTATCGG+AGG 0.709526 tig0024026:+17764 Msa1413360:CDS
ATCCAAGTAAATTTGCAACG+TGG 0.745608 tig0024026:+15609 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAAAATAGAACAAAAT+GGG - tig0024026:18265-18284 None:intergenic 10.0%
!!! ATTTTGTTCTATTTTTAATA+GGG + tig0024026:18265-18284 Msa1413360:intron 10.0%
!! TATCAAATACTATTATTTAA+TGG - tig0024026:20002-20021 None:intergenic 10.0%
!!! TATTTTATTGCAAAAACTTT+AGG + tig0024026:17285-17304 Msa1413360:intron 15.0%
!!! TTATTTTTAGAGATTTTCAT+AGG + tig0024026:17398-17417 Msa1413360:intron 15.0%
!!! AATTTTGTATTACAATATTG+TGG - tig0024026:17586-17605 None:intergenic 15.0%
!! AAATAATTCAACAATATTTG+AGG - tig0024026:17896-17915 None:intergenic 15.0%
!! CTATTAAAAATAGAACAAAA+TGG - tig0024026:18266-18285 None:intergenic 15.0%
!!! CATTTTGTTCTATTTTTAAT+AGG + tig0024026:18264-18283 Msa1413360:intron 15.0%
!!! CATTTTATATATTTGCATTT+TGG + tig0024026:18429-18448 Msa1413360:intron 15.0%
!!! TAAATCATTTTATCAAATAG+AGG + tig0024026:18705-18724 Msa1413360:intron 15.0%
!! AAACTCAAAAATTATATTGA+AGG + tig0024026:19130-19149 Msa1413360:intron 15.0%
!!! AATGGTTTTATAATTATTAC+TGG + tig0024026:19714-19733 Msa1413360:intron 15.0%
!!! ATGGTTTTATAATTATTACT+GGG + tig0024026:19715-19734 Msa1413360:intron 15.0%
!! TAACTTAGGATAATAAGAAT+TGG - tig0024026:16225-16244 None:intergenic 20.0%
!! ACAAGAAAAAAAAAATTCCA+CGG + tig0024026:16784-16803 Msa1413360:intron 20.0%
!!! TTTTCTTTTTCCATTATTTG+AGG - tig0024026:17007-17026 None:intergenic 20.0%
!! ATTATGTAGTTGAAATTGTT+TGG + tig0024026:17159-17178 Msa1413360:intron 20.0%
!!! AAAAACTTTAGGATGTATTT+GGG + tig0024026:17296-17315 Msa1413360:intron 20.0%
!!! TTTATTATTTACATTTTGGC+TGG + tig0024026:17913-17932 Msa1413360:intron 20.0%
!!! TTATTATTTACATTTTGGCT+GGG + tig0024026:17914-17933 Msa1413360:intron 20.0%
!! TATTCCATCTAAATCATTTA+TGG + tig0024026:17986-18005 Msa1413360:intron 20.0%
!! TATTCCATAAATGATTTAGA+TGG - tig0024026:17993-18012 None:intergenic 20.0%
!! AGAAACTATTAGTAAAGATT+TGG + tig0024026:18851-18870 Msa1413360:intron 20.0%
!! AGATTTGGAAATTAATTAGT+TGG + tig0024026:18866-18885 Msa1413360:intron 20.0%
!! TCAAAAATTATATTGAAGGA+GGG + tig0024026:19134-19153 Msa1413360:intron 20.0%
!!! GAACAATCTCTAAAAAAATA+CGG + tig0024026:19252-19271 Msa1413360:intron 20.0%
!! AATAATAGTATTTGATACGT+TGG + tig0024026:20005-20024 Msa1413360:three_prime_UTR 20.0%
!! ATAATAGTATTTGATACGTT+GGG + tig0024026:20006-20025 Msa1413360:three_prime_UTR 20.0%
!!! AATTCGTTTTTGATCATTCT+TGG + tig0024026:16171-16190 Msa1413360:CDS 25.0%
!!! ATTCGTTTTTGATCATTCTT+GGG + tig0024026:16172-16191 Msa1413360:CDS 25.0%
! ATAAAAATGAGAGTAAGCAT+TGG - tig0024026:16198-16217 None:intergenic 25.0%
!!! AATGCTTACTCTCATTTTTA+TGG + tig0024026:16197-16216 Msa1413360:CDS 25.0%
! CATCAAAATTAGTATAGTTG+CGG - tig0024026:16472-16491 None:intergenic 25.0%
!!! TAATTTTGATGACTTCTTGA+TGG + tig0024026:16481-16500 Msa1413360:CDS 25.0%
! CAAGAAAAAAAAAATTCCAC+GGG + tig0024026:16785-16804 Msa1413360:intron 25.0%
! AAGAAAAAAAAAATTCCACG+GGG + tig0024026:16786-16805 Msa1413360:intron 25.0%
! AAAGTCTAAACCTCAAATAA+TGG + tig0024026:16994-17013 Msa1413360:intron 25.0%
! ATATGAAAACACTGAAACAT+TGG - tig0024026:17141-17160 None:intergenic 25.0%
! ACTTCATTGTAATCTCTTAA+AGG - tig0024026:17266-17285 None:intergenic 25.0%
!!! CAAAAACTTTAGGATGTATT+TGG + tig0024026:17295-17314 Msa1413360:intron 25.0%
! GATACAAAGTGAAAACAATT+TGG - tig0024026:17378-17397 None:intergenic 25.0%
!! TTAGAGATTTTCATAGGAAA+TGG + tig0024026:17404-17423 Msa1413360:intron 25.0%
! TCTATTTGCTTTCTAATTAC+TGG + tig0024026:17464-17483 Msa1413360:intron 25.0%
!!! TATTTCGTTTTTGTATTGGA+AGG + tig0024026:17489-17508 Msa1413360:intron 25.0%
! GTAGTGTCTAAATATTAGTA+TGG + tig0024026:17618-17637 Msa1413360:intron 25.0%
! AAAAATGGATAGTAAGTTTG+TGG - tig0024026:17824-17843 None:intergenic 25.0%
!!! TTTTGAAGCATGTTATTATC+AGG + tig0024026:17847-17866 Msa1413360:CDS 25.0%
! ACTATAGCATTATTCTCTAA+TGG - tig0024026:17951-17970 None:intergenic 25.0%
!! ATGGAATAAACTTTTCAGTT+TGG + tig0024026:18005-18024 Msa1413360:intron 25.0%
! TTAACTTATAGACGGTATTT+GGG + tig0024026:18145-18164 Msa1413360:intron 25.0%
! AATCTTCATCAATAAGGTAA+TGG - tig0024026:18572-18591 None:intergenic 25.0%
!! ACCTTATTGATGAAGATTTT+AGG + tig0024026:18574-18593 Msa1413360:CDS 25.0%
! TCCTAAAATCTTCATCAATA+AGG - tig0024026:18578-18597 None:intergenic 25.0%
! TTTGTCTCTACAAAATCTAT+AGG - tig0024026:18809-18828 None:intergenic 25.0%
! TAATTAGTTGGATCGAAATA+TGG + tig0024026:18878-18897 Msa1413360:intron 25.0%
! CTCAAAAATTATATTGAAGG+AGG + tig0024026:19133-19152 Msa1413360:intron 25.0%
!!! GTTGTTTTTGTTTGTGTTAA+AGG + tig0024026:19431-19450 Msa1413360:intron 25.0%
!!! TTTTTGTTTGTGTTAAAGGT+GGG + tig0024026:19435-19454 Msa1413360:intron 25.0%
! GAGAAGTTATAACTACATTA+AGG - tig0024026:19512-19531 None:intergenic 25.0%
! TAACTTCTCATCTAATCAAA+AGG + tig0024026:19523-19542 Msa1413360:intron 25.0%
! AAAAGTTTGCATTCTTTCAA+TGG + tig0024026:19696-19715 Msa1413360:intron 25.0%
!! TAGAAAGTATATACACACAT+TGG + tig0024026:19883-19902 Msa1413360:exon 25.0%
! TTCATCCTTTATGACAAAAT+TGG + tig0024026:20037-20056 Msa1413360:three_prime_UTR 25.0%
! TCAATGCTTCTTCATTGTTT+TGG + tig0024026:15781-15800 Msa1413360:CDS 30.0%
! CAATGCTTCTTCATTGTTTT+GGG + tig0024026:15782-15801 Msa1413360:CDS 30.0%
!! AATGCTTCTTCATTGTTTTG+GGG + tig0024026:15783-15802 Msa1413360:CDS 30.0%
! AGAAAAGCATGTGATAGAAA+TGG - tig0024026:16020-16039 None:intergenic 30.0%
TCTTCTTCTGTTAAGGAAAA+GGG + tig0024026:16059-16078 Msa1413360:CDS 30.0%
ATCAAAAACGAATTCACCAT+AGG - tig0024026:16165-16184 None:intergenic 30.0%
AAAATTAGTATAGTTGCGGT+TGG - tig0024026:16468-16487 None:intergenic 30.0%
TGGACTTGAAGCATAATAAA+AGG + tig0024026:16501-16520 Msa1413360:CDS 30.0%
! ATACCTTTATTTCATAACCG+CGG - tig0024026:16586-16605 None:intergenic 30.0%
GTAAACTTCTGTTGAACAAA+TGG + tig0024026:16677-16696 Msa1413360:intron 30.0%
CTATACAAGACATGACAAAT+TGG - tig0024026:16706-16725 None:intergenic 30.0%
TTTGTCATGTCTTGTATAGT+AGG + tig0024026:16707-16726 Msa1413360:intron 30.0%
! CTTCATAGTTCTATGTTTGT+CGG + tig0024026:16753-16772 Msa1413360:intron 30.0%
AGTTAGTTAAAGCCAAATGA+AGG + tig0024026:16891-16910 Msa1413360:intron 30.0%
GTTAGTTAAAGCCAAATGAA+GGG + tig0024026:16892-16911 Msa1413360:intron 30.0%
TCGTTCAGATGTTTAATGAT+TGG - tig0024026:17046-17065 None:intergenic 30.0%
!! GGCATATTTCGTTTTTGTAT+TGG + tig0024026:17485-17504 Msa1413360:intron 30.0%
CTAAATATTAGTATGGCTAC+TGG + tig0024026:17625-17644 Msa1413360:intron 30.0%
!!! AGGGAATTTTTTCATGAGAT+GGG + tig0024026:17680-17699 Msa1413360:CDS 30.0%
CATGCTTCAAAATGCAAAAA+TGG - tig0024026:17839-17858 None:intergenic 30.0%
GTTAACTTATAGACGGTATT+TGG + tig0024026:18144-18163 Msa1413360:intron 30.0%
ATAGAACAAAATGGGAGATA+AGG - tig0024026:18257-18276 None:intergenic 30.0%
!!! AGGAGAAACATGCTATTTTT+TGG - tig0024026:18331-18350 None:intergenic 30.0%
TCAAAGGCCTATTTACTATT+AGG + tig0024026:18402-18421 Msa1413360:intron 30.0%
CAAAGGCCTATTTACTATTA+GGG + tig0024026:18403-18422 Msa1413360:intron 30.0%
ATGCTTCCCTAATAGTAAAT+AGG - tig0024026:18412-18431 None:intergenic 30.0%
AATCTTAAAACAGTAGAAGC+AGG + tig0024026:18489-18508 Msa1413360:CDS 30.0%
AAAGTGAACTTAGAAAGACA+AGG - tig0024026:18669-18688 None:intergenic 30.0%
! TTTTATTATTCCTCTGCCTT+TGG + tig0024026:18744-18763 Msa1413360:intron 30.0%
CTCTACAAAATCTATAGGTA+AGG - tig0024026:18804-18823 None:intergenic 30.0%
TTATGCTTACTTTGCAAGTT+TGG + tig0024026:18998-19017 Msa1413360:intron 30.0%
! ATAAACCCCATATTCAAGTT+GGG - tig0024026:19080-19099 None:intergenic 30.0%
AATAAACCCCATATTCAAGT+TGG - tig0024026:19081-19100 None:intergenic 30.0%
!! TTTGAGTTTCTCCATTTTGA+GGG - tig0024026:19119-19138 None:intergenic 30.0%
!!! TTTTGAGTTTCTCCATTTTG+AGG - tig0024026:19120-19139 None:intergenic 30.0%
TTAATCATTAAAGCCAAGCT+GGG + tig0024026:19385-19404 Msa1413360:intron 30.0%
!! GTTTTTGTTTGTGTTAAAGG+TGG + tig0024026:19434-19453 Msa1413360:intron 30.0%
GATAGTCATAACTAGGATAT+AGG - tig0024026:19480-19499 None:intergenic 30.0%
TAAGTTCTTAAGCCAACAAA+TGG - tig0024026:19623-19642 None:intergenic 30.0%
TGTGTGTATATACTTTCTAC+AGG - tig0024026:19882-19901 None:intergenic 30.0%
CTTTATGACAAAATTGGAGA+CGG + tig0024026:20043-20062 Msa1413360:three_prime_UTR 30.0%
!!! ATTGTTTTGGGGATCTTCTA+AGG + tig0024026:15794-15813 Msa1413360:CDS 35.0%
!! AGAAATGGATTGAACTTGTC+TGG - tig0024026:16005-16024 None:intergenic 35.0%
ACTATCCTCTTCTTCTGTTA+AGG + tig0024026:16052-16071 Msa1413360:CDS 35.0%
! CTTTTCCTTAACAGAAGAAG+AGG - tig0024026:16060-16079 None:intergenic 35.0%
CTCTTCTTCTGTTAAGGAAA+AGG + tig0024026:16058-16077 Msa1413360:CDS 35.0%
AACGAATTCACCATAGGAAT+GGG - tig0024026:16159-16178 None:intergenic 35.0%
AAACGAATTCACCATAGGAA+TGG - tig0024026:16160-16179 None:intergenic 35.0%
!! CTTCATTGTTTCTGCTATCA+AGG + tig0024026:16325-16344 Msa1413360:CDS 35.0%
TCATGTCTTGTATAGTAGGA+GGG + tig0024026:16711-16730 Msa1413360:intron 35.0%
AAAAAAAAATTCCACGGGGT+TGG + tig0024026:16790-16809 Msa1413360:intron 35.0%
GGTTGGATATATCAGAATTC+CGG + tig0024026:16807-16826 Msa1413360:intron 35.0%
ACACAGCATGTTCTAATGAA+TGG + tig0024026:16846-16865 Msa1413360:intron 35.0%
GTAGATGCTAGAGTTTCAAA+AGG + tig0024026:16958-16977 Msa1413360:intron 35.0%
! TAGAGTTTCAAAAGGTGCAA+TGG + tig0024026:16966-16985 Msa1413360:intron 35.0%
ATGTAACACCAAACAATCAG+TGG + tig0024026:17080-17099 Msa1413360:intron 35.0%
TGTAACACCAAACAATCAGT+GGG + tig0024026:17081-17100 Msa1413360:intron 35.0%
! TTCTATTCCTAGAGAAGCAT+TGG - tig0024026:17114-17133 None:intergenic 35.0%
!! TTTAGGATGTATTTGGGTTG+AGG + tig0024026:17302-17321 Msa1413360:intron 35.0%
TAGAATGCATCATAACCCAA+GGG - tig0024026:17448-17467 None:intergenic 35.0%
ATAGAATGCATCATAACCCA+AGG - tig0024026:17449-17468 None:intergenic 35.0%
! ATTCCTTCTACACCTTTTAC+AGG + tig0024026:17524-17543 Msa1413360:CDS 35.0%
ATCAGTTGTGTTCCTGTAAA+AGG - tig0024026:17539-17558 None:intergenic 35.0%
!!! GAGGGAATTTTTTCATGAGA+TGG + tig0024026:17679-17698 Msa1413360:CDS 35.0%
TCATGAGATGGGATCAAAAA+TGG + tig0024026:17691-17710 Msa1413360:CDS 35.0%
CATGAGATGGGATCAAAAAT+GGG + tig0024026:17692-17711 Msa1413360:CDS 35.0%
TATTGTTGCTGAAGACAATG+AGG + tig0024026:17730-17749 Msa1413360:CDS 35.0%
ATCTCCTCCGATAAGATTTA+GGG - tig0024026:17771-17790 None:intergenic 35.0%
TATCTCCTCCGATAAGATTT+AGG - tig0024026:17772-17791 None:intergenic 35.0%
TGTGGGTGTTAACTTATAGA+CGG + tig0024026:18137-18156 Msa1413360:intron 35.0%
TGGGAGATAAGGTAAAAATG+TGG - tig0024026:18246-18265 None:intergenic 35.0%
! TTTAGTTCGTGAATCTTCTC+AGG + tig0024026:18614-18633 Msa1413360:CDS 35.0%
ATAGTCTCCCAACTTGAATA+TGG + tig0024026:19070-19089 Msa1413360:intron 35.0%
TAGTCTCCCAACTTGAATAT+GGG + tig0024026:19071-19090 Msa1413360:intron 35.0%
AACACAAAATCCCCTCAAAA+TGG + tig0024026:19105-19124 Msa1413360:intron 35.0%
! TTGAGTTTCTCCATTTTGAG+GGG - tig0024026:19118-19137 None:intergenic 35.0%
GATTAAGGAGTAATCCTATC+AGG - tig0024026:19371-19390 None:intergenic 35.0%
!! CAGCTTGGCTTTAATGATTA+AGG - tig0024026:19386-19405 None:intergenic 35.0%
CTTAATCATTAAAGCCAAGC+TGG + tig0024026:19384-19403 Msa1413360:intron 35.0%
CAAACAAAAACAACACATCC+TGG - tig0024026:19425-19444 None:intergenic 35.0%
ATCAGTCGATAGTCATAACT+AGG - tig0024026:19487-19506 None:intergenic 35.0%
! TTAAGCACAGTAGTGCATTT+TGG + tig0024026:19662-19681 Msa1413360:intron 35.0%
TGTCACATTATCAAGTGCTT+TGG - tig0024026:19791-19810 None:intergenic 35.0%
AAGTATATACACACATTGGC+AGG + tig0024026:19887-19906 Msa1413360:three_prime_UTR 35.0%
AGTATATACACACATTGGCA+GGG + tig0024026:19888-19907 Msa1413360:three_prime_UTR 35.0%
TGTATGTACAGTTGAATCAG+TGG + tig0024026:19976-19995 Msa1413360:three_prime_UTR 35.0%
! CGTCTCCAATTTTGTCATAA+AGG - tig0024026:20045-20064 None:intergenic 35.0%
GATTCCATTGTGAACATAAC+TGG + tig0024026:20103-20122 Msa1413360:three_prime_UTR 35.0%
GAAGATTTGCGATGATGAGA+CGG - tig0024026:15699-15718 None:intergenic 40.0%
TTCTTCAGATTCTGTTGTGC+TGG - tig0024026:15886-15905 None:intergenic 40.0%
AGATATTCCATCCACCCAAT+GGG + tig0024026:15950-15969 Msa1413360:CDS 40.0%
CTTCTGTTAAGGAAAAGGGA+TGG + tig0024026:16063-16082 Msa1413360:CDS 40.0%
TATCTCAAGACCCATTCCTA+TGG + tig0024026:16146-16165 Msa1413360:CDS 40.0%
GTGTTACGAAGTAAGATCCT+TGG - tig0024026:16281-16300 None:intergenic 40.0%
GAAGGAAGAAAGTTGAGACA+TGG - tig0024026:16360-16379 None:intergenic 40.0%
TTTCAGAGGGAAAAGTGACA+TGG - tig0024026:16382-16401 None:intergenic 40.0%
TGGCACAAATTCACTCAACA+AGG + tig0024026:16407-16426 Msa1413360:CDS 40.0%
GATACTGCATTCCAATCCTA+GGG - tig0024026:16439-16458 None:intergenic 40.0%
TGATACTGCATTCCAATCCT+AGG - tig0024026:16440-16459 None:intergenic 40.0%
GTCATGTCTTGTATAGTAGG+AGG + tig0024026:16710-16729 Msa1413360:intron 40.0%
AGTTCTATGTTTGTCGGTGT+TGG + tig0024026:16759-16778 Msa1413360:intron 40.0%
ATTAGAACATGCTGTGTCAG+TGG - tig0024026:16843-16862 None:intergenic 40.0%
GCTGTAATTCACCCTTCATT+TGG - tig0024026:16906-16925 None:intergenic 40.0%
CTCTGCATATGGGTCAAAAT+TGG - tig0024026:16939-16958 None:intergenic 40.0%
CTAGCATCTACTCTGCATAT+GGG - tig0024026:16949-16968 None:intergenic 40.0%
TCTAGCATCTACTCTGCATA+TGG - tig0024026:16950-16969 None:intergenic 40.0%
GTAACACCAAACAATCAGTG+GGG + tig0024026:17082-17101 Msa1413360:intron 40.0%
! TAACTTCCCCACTGATTGTT+TGG - tig0024026:17091-17110 None:intergenic 40.0%
GAAGTTACCAATGCTTCTCT+AGG + tig0024026:17104-17123 Msa1413360:intron 40.0%
AAAGTGAACTTCTGTCAGAG+AGG - tig0024026:17239-17258 None:intergenic 40.0%
! CTCTGACAGAAGTTCACTTT+TGG + tig0024026:17239-17258 Msa1413360:intron 40.0%
AAACAAACCAAACAAGCCCT+TGG + tig0024026:17429-17448 Msa1413360:intron 40.0%
AACAAACCAAACAAGCCCTT+GGG + tig0024026:17430-17449 Msa1413360:intron 40.0%
! GTTCCTGTAAAAGGTGTAGA+AGG - tig0024026:17530-17549 None:intergenic 40.0%
AAAAATTCCCTCGTCAGGAA+AGG - tig0024026:17671-17690 None:intergenic 40.0%
CATGAAAAAATTCCCTCGTC+AGG - tig0024026:17676-17695 None:intergenic 40.0%
ATCGGAGGAGATACTTTGTT+TGG + tig0024026:17779-17798 Msa1413360:CDS 40.0%
! TCGGAGGAGATACTTTGTTT+GGG + tig0024026:17780-17799 Msa1413360:CDS 40.0%
!!! TTTACATTTTGGCTGGGCTT+TGG + tig0024026:17920-17939 Msa1413360:intron 40.0%
CTAAATTAGCCCACCCAAAT+CGG + tig0024026:18050-18069 Msa1413360:intron 40.0%
!!! AGTACACTCCTTTTTCAGTG+TGG + tig0024026:18108-18127 Msa1413360:intron 40.0%
CATCAAAGCCACACTGAAAA+AGG - tig0024026:18119-18138 None:intergenic 40.0%
!!! TTTTCAGTGTGGCTTTGATG+TGG + tig0024026:18119-18138 Msa1413360:intron 40.0%
!! TTTCAGTGTGGCTTTGATGT+GGG + tig0024026:18120-18139 Msa1413360:intron 40.0%
! TATACTTTAGTTCCGCCACT+TGG - tig0024026:18223-18242 None:intergenic 40.0%
! ACTGCAGTGCGACTTTTAAA+AGG - tig0024026:18351-18370 None:intergenic 40.0%
!!! GCATTTTGGTTTGACATCAC+AGG + tig0024026:18443-18462 Msa1413360:intron 40.0%
TTCGTGAATCTTCTCAGGTA+TGG + tig0024026:18619-18638 Msa1413360:intron 40.0%
AAGGAGAGTAGATCATCAGA+TGG - tig0024026:18785-18804 None:intergenic 40.0%
!! CTTGCTTGTTGTTGTTGTGA+TGG + tig0024026:18964-18983 Msa1413360:intron 40.0%
TGCTTACTTTGCAAGTTTGG+AGG + tig0024026:19001-19020 Msa1413360:intron 40.0%
GCTTACTTTGCAAGTTTGGA+GGG + tig0024026:19002-19021 Msa1413360:intron 40.0%
CTTACTTTGCAAGTTTGGAG+GGG + tig0024026:19003-19022 Msa1413360:intron 40.0%
TGGGTATAAGGAAGGAAGTA+AGG + tig0024026:19032-19051 Msa1413360:intron 40.0%
GGGTATAAGGAAGGAAGTAA+GGG + tig0024026:19033-19052 Msa1413360:intron 40.0%
AGTCTCCCAACTTGAATATG+GGG + tig0024026:19072-19091 Msa1413360:intron 40.0%
TCAGGAGACAAAACCAACTA+CGG - tig0024026:19353-19372 None:intergenic 40.0%
!!! AGTTGGTTTTGTCTCCTGAT+AGG + tig0024026:19354-19373 Msa1413360:intron 40.0%
TGCAAAGTGAAGGATTGTTC+TGG - tig0024026:19569-19588 None:intergenic 40.0%
CTTGCCTTCAATTCTAATCG+AGG - tig0024026:19593-19612 None:intergenic 40.0%
CTCGATTAGAATTGAAGGCA+AGG + tig0024026:19591-19610 Msa1413360:intron 40.0%
GCAAGGATGTAACCATTTGT+TGG + tig0024026:19608-19627 Msa1413360:intron 40.0%
!! ACAGTAGTTGGTAGCATGAA+TGG - tig0024026:19764-19783 None:intergenic 40.0%
!! TGCTTTGGAATCACAGTAGT+TGG - tig0024026:19776-19795 None:intergenic 40.0%
! TGTGACATTTTTGCCTGTAC+AGG + tig0024026:19804-19823 Msa1413360:intron 40.0%
ATAACAAGCTTCACCTGTAC+AGG - tig0024026:19820-19839 None:intergenic 40.0%
ATGAAACTCTTGCGTGATTC+TGG + tig0024026:19838-19857 Msa1413360:CDS 40.0%
CAGATATTCCATCCACCCAA+TGG + tig0024026:15949-15968 Msa1413360:CDS 45.0%
! AAGAGCACATGCATCCCATT+GGG - tig0024026:15967-15986 None:intergenic 45.0%
GAATATCCTTAGCGACGATG+TGG - tig0024026:16097-16116 None:intergenic 45.0%
GAATGGGTCTTGAGATAGAG+AGG - tig0024026:16143-16162 None:intergenic 45.0%
GGGACACAGGATTGTAACTT+AGG - tig0024026:16239-16258 None:intergenic 45.0%
ACGAAGTAAGATCCTTGGAC+CGG - tig0024026:16276-16295 None:intergenic 45.0%
AGAGGGAAAAGTGACATGGA+AGG - tig0024026:16378-16397 None:intergenic 45.0%
!! CTTTTCCCTCTGAAAACGAG+TGG + tig0024026:16387-16406 Msa1413360:CDS 45.0%
!! TTGTGCCACTCGTTTTCAGA+GGG - tig0024026:16395-16414 None:intergenic 45.0%
!! TTTGTGCCACTCGTTTTCAG+AGG - tig0024026:16396-16415 None:intergenic 45.0%
GGATTGGAATGCAGTATCAC+TGG + tig0024026:16441-16460 Msa1413360:CDS 45.0%
TTGATTATGAAACGCCTCCG+CGG + tig0024026:16566-16585 Msa1413360:CDS 45.0%
! CCTTTATTTCATAACCGCGG+AGG - tig0024026:16583-16602 None:intergenic 45.0%
CCTCCGCGGTTATGAAATAA+AGG + tig0024026:16580-16599 Msa1413360:CDS 45.0%
TTCTGATATATCCAACCCCG+TGG - tig0024026:16804-16823 None:intergenic 45.0%
! TGTCAGTGGAAAAAGTGCAC+CGG - tig0024026:16829-16848 None:intergenic 45.0%
CTGTCAGAGAGGTAAACATC+AGG - tig0024026:17228-17247 None:intergenic 45.0%
! TCATAACCCAAGGGCTTGTT+TGG - tig0024026:17439-17458 None:intergenic 45.0%
TGTATTGGAAGGCAAAGCAC+TGG + tig0024026:17500-17519 Msa1413360:intron 45.0%
! GTATTGGAAGGCAAAGCACT+GGG + tig0024026:17501-17520 Msa1413360:intron 45.0%
!! GCTACTGGTCTTTGACAGAT+GGG + tig0024026:17640-17659 Msa1413360:intron 45.0%
!! CTACTGGTCTTTGACAGATG+GGG + tig0024026:17641-17660 Msa1413360:intron 45.0%
GACAATGAGGAACTAGTAGC+AGG + tig0024026:17743-17762 Msa1413360:CDS 45.0%
GCAGGTGCCCTAAATCTTAT+CGG + tig0024026:17761-17780 Msa1413360:CDS 45.0%
! ATACTTTGTTTGGGCGCCTA+TGG + tig0024026:17789-17808 Msa1413360:CDS 45.0%
! TACTTTGTTTGGGCGCCTAT+GGG + tig0024026:17790-17809 Msa1413360:CDS 45.0%
GAATCGAACCTGAGACCTTA+AGG + tig0024026:18082-18101 Msa1413360:intron 45.0%
! AAGGAGTGTACTCCTCCTTA+AGG - tig0024026:18100-18119 None:intergenic 45.0%
TTCTCTTCAGTTCCACCAAG+TGG + tig0024026:18205-18224 Msa1413360:intron 45.0%
GACCCTGTGATTTCTGTCAA+AGG + tig0024026:18386-18405 Msa1413360:intron 45.0%
GGCCTTTGACAGAAATCACA+GGG - tig0024026:18391-18410 None:intergenic 45.0%
AGGCCTTTGACAGAAATCAC+AGG - tig0024026:18392-18411 None:intergenic 45.0%
GGTGAACATAAGATTGAGCG+TGG + tig0024026:18519-18538 Msa1413360:CDS 45.0%
TGGCAGCTATATGTTGTCAC+TGG - tig0024026:18552-18571 None:intergenic 45.0%
GAGGATAGTCAGATCACCAA+AGG - tig0024026:18763-18782 None:intergenic 45.0%
GAGAGTAGATCATCAGATGG+AGG - tig0024026:18782-18801 None:intergenic 45.0%
!! ACTAAGTGGGGTTGGCTATA+TGG - tig0024026:18935-18954 None:intergenic 45.0%
ATATAGCCAACCCCACTTAG+TGG + tig0024026:18934-18953 Msa1413360:intron 45.0%
TATAGCCAACCCCACTTAGT+GGG + tig0024026:18935-18954 Msa1413360:intron 45.0%
! AAGCCTTTTCCCACTAAGTG+GGG - tig0024026:18947-18966 None:intergenic 45.0%
! CAAGCCTTTTCCCACTAAGT+GGG - tig0024026:18948-18967 None:intergenic 45.0%
GTTTGTGAGTTTGGAGGGTA+GGG - tig0024026:19326-19345 None:intergenic 45.0%
TGTTTGTGAGTTTGGAGGGT+AGG - tig0024026:19327-19346 None:intergenic 45.0%
GCTCTGTTTGTGAGTTTGGA+GGG - tig0024026:19331-19350 None:intergenic 45.0%
TACGGCTCTGTTTGTGAGTT+TGG - tig0024026:19335-19354 None:intergenic 45.0%
TAATCGAGGCTGCAAAGTGA+AGG - tig0024026:19579-19598 None:intergenic 45.0%
GCAGCCTCGATTAGAATTGA+AGG + tig0024026:19586-19605 Msa1413360:intron 45.0%
GATTCTGGTCCTTTCAAGGA+AGG + tig0024026:19853-19872 Msa1413360:CDS 45.0%
TACAGGACACCTTCCTTGAA+AGG - tig0024026:19865-19884 None:intergenic 45.0%
!!! ATTATTTATTATTTACATTT+TGG + tig0024026:17909-17928 Msa1413360:intron 5.0%
! CAAGAGCACATGCATCCCAT+TGG - tig0024026:15968-15987 None:intergenic 50.0%
GCATGTGCTCTTGATGCTAC+AGG + tig0024026:15975-15994 Msa1413360:CDS 50.0%
TGTGCTCTTGATGCTACAGG+AGG + tig0024026:15978-15997 Msa1413360:CDS 50.0%
CTCAACAAGGTTTCCTCCCT+AGG + tig0024026:16420-16439 Msa1413360:CDS 50.0%
CAAGGTTTCCTCCCTAGGAT+TGG + tig0024026:16425-16444 Msa1413360:CDS 50.0%
ACTGCATTCCAATCCTAGGG+AGG - tig0024026:16436-16455 None:intergenic 50.0%
! GATACGTCAAGAGCGCAAGA+AGG + tig0024026:16529-16548 Msa1413360:CDS 50.0%
!! GGCTACTGGTCTTTGACAGA+TGG + tig0024026:17639-17658 Msa1413360:intron 50.0%
GGTGCCCTAAATCTTATCGG+AGG + tig0024026:17764-17783 Msa1413360:CDS 50.0%
! ACTTTGTTTGGGCGCCTATG+GGG + tig0024026:17791-17810 Msa1413360:CDS 50.0%
TTTGTGGATGACACCCCCAT+AGG - tig0024026:17808-17827 None:intergenic 50.0%
TCTCAGGTTCGATTCTCCTC+GGG - tig0024026:18077-18096 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCCT+CGG - tig0024026:18078-18097 None:intergenic 50.0%
TCGAACCTGAGACCTTAAGG+AGG + tig0024026:18085-18104 Msa1413360:intron 50.0%
GTACTCCTCCTTAAGGTCTC+AGG - tig0024026:18093-18112 None:intergenic 50.0%
TCTTCAGTTCCACCAAGTGG+CGG + tig0024026:18208-18227 Msa1413360:intron 50.0%
! ACTTTAGTTCCGCCACTTGG+TGG - tig0024026:18220-18239 None:intergenic 50.0%
GACAGAAATCACAGGGTCAC+AGG - tig0024026:18384-18403 None:intergenic 50.0%
AACAGTAGAAGCAGGAGCTC+AGG + tig0024026:18497-18516 Msa1413360:CDS 50.0%
ACAGTAGAAGCAGGAGCTCA+GGG + tig0024026:18498-18517 Msa1413360:CDS 50.0%
TTCTCAGGTATGGTGCAGCA+GGG + tig0024026:18629-18648 Msa1413360:intron 50.0%
AGTCAGATCACCAAAGGCAG+AGG - tig0024026:18757-18776 None:intergenic 50.0%
! CTTTTCCCACTAAGTGGGGT+TGG - tig0024026:18943-18962 None:intergenic 50.0%
CAACCCCACTTAGTGGGAAA+AGG + tig0024026:18941-18960 Msa1413360:intron 50.0%
! GCAAGCCTTTTCCCACTAAG+TGG - tig0024026:18949-18968 None:intergenic 50.0%
ACTTTGCAAGTTTGGAGGGG+AGG + tig0024026:19006-19025 Msa1413360:intron 50.0%
AAGTTTGGAGGGGAGGCTTT+GGG + tig0024026:19013-19032 Msa1413360:intron 50.0%
!! GGAGGCTTTGGGTATAAGGA+AGG + tig0024026:19024-19043 Msa1413360:intron 50.0%
GGCTCTGTTTGTGAGTTTGG+AGG - tig0024026:19332-19351 None:intergenic 50.0%
CTCACAAACAGAGCCGTAGT+TGG + tig0024026:19337-19356 Msa1413360:intron 50.0%
ACTCACAACAGTTCCCAGCT+TGG - tig0024026:19401-19420 None:intergenic 50.0%
TGGGAACTGTTGTGAGTACC+AGG + tig0024026:19404-19423 Msa1413360:intron 50.0%
GCGTGATTCTGGTCCTTTCA+AGG + tig0024026:19849-19868 Msa1413360:CDS 50.0%
GTGATGGCAGCAGTAGCGAT+AGG + tig0024026:15645-15664 Msa1413360:exon 55.0%
CAGCAGTAGCGATAGGAGTG+AGG + tig0024026:15652-15671 Msa1413360:CDS 55.0%
CATGCATCCCATTGGGTGGA+TGG - tig0024026:15960-15979 None:intergenic 55.0%
AGCACATGCATCCCATTGGG+TGG - tig0024026:15964-15983 None:intergenic 55.0%
CTTAGCGACGATGTGGTGTG+GGG - tig0024026:16090-16109 None:intergenic 55.0%
CCTTAGCGACGATGTGGTGT+GGG - tig0024026:16091-16110 None:intergenic 55.0%
TCCTTAGCGACGATGTGGTG+TGG - tig0024026:16092-16111 None:intergenic 55.0%
AGATCCTTGGACCGGTGACA+GGG - tig0024026:16268-16287 None:intergenic 55.0%
AAGATCCTTGGACCGGTGAC+AGG - tig0024026:16269-16288 None:intergenic 55.0%
GGGTACTCCTTTCCTGACGA+GGG + tig0024026:17661-17680 Msa1413360:CDS 55.0%
! CTTTGTTTGGGCGCCTATGG+GGG + tig0024026:17792-17811 Msa1413360:CDS 55.0%
! ATTCTCCTCGGGGCCGATTT+GGG - tig0024026:18066-18085 None:intergenic 55.0%
CTCAGGTTCGATTCTCCTCG+GGG - tig0024026:18076-18095 None:intergenic 55.0%
CTTCTCAGGTATGGTGCAGC+AGG + tig0024026:18628-18647 Msa1413360:intron 55.0%
CAAGTTTGGAGGGGAGGCTT+TGG + tig0024026:19012-19031 Msa1413360:intron 55.0%
!! GAGGGGAGGCTTTGGGTATA+AGG + tig0024026:19020-19039 Msa1413360:intron 55.0%
! CTTTGGGGGGAAGAGAGTAG+GGG - tig0024026:19299-19318 None:intergenic 55.0%
!! GCTTTGGGGGGAAGAGAGTA+GGG - tig0024026:19300-19319 None:intergenic 55.0%
GTGAGTTTGGAGGGTAGGGA+GGG - tig0024026:19322-19341 None:intergenic 55.0%
TGTGAGTTTGGAGGGTAGGG+AGG - tig0024026:19323-19342 None:intergenic 55.0%
TTGCAACGTGGCGAGGAGTG+AGG + tig0024026:15621-15640 Msa1413360:five_prime_UTR 60.0%
TGCAACGTGGCGAGGAGTGA+GGG + tig0024026:15622-15641 Msa1413360:five_prime_UTR 60.0%
CCCACACCACATCGTCGCTA+AGG + tig0024026:16088-16107 Msa1413360:CDS 60.0%
GATCCTTGGACCGGTGACAG+GGG - tig0024026:16267-16286 None:intergenic 60.0%
! GGGGTACTCCTTTCCTGACG+AGG + tig0024026:17660-17679 Msa1413360:CDS 60.0%
GATTCTCCTCGGGGCCGATT+TGG - tig0024026:18067-18086 None:intergenic 60.0%
!! GGCTTTGGGGGGAAGAGAGT+AGG - tig0024026:19301-19320 None:intergenic 60.0%
TGGAGGGTAGGGAGGGCTTT+GGG - tig0024026:19315-19334 None:intergenic 60.0%
TTGGAGGGTAGGGAGGGCTT+TGG - tig0024026:19316-19335 None:intergenic 60.0%
GCAACGTGGCGAGGAGTGAG+GGG + tig0024026:15623-15642 Msa1413360:five_prime_UTR 65.0%
TGGCGAGGAGTGAGGGGTGA+TGG + tig0024026:15629-15648 Msa1413360:exon 65.0%
GACAGGGGTGAAGGGGACAC+AGG - tig0024026:16252-16271 None:intergenic 65.0%
GTCCCCTTCACCCCTGTCAC+CGG + tig0024026:16254-16273 Msa1413360:CDS 65.0%
GACCGGTGACAGGGGTGAAG+GGG - tig0024026:16259-16278 None:intergenic 65.0%
GGACCGGTGACAGGGGTGAA+GGG - tig0024026:16260-16279 None:intergenic 65.0%
TGGACCGGTGACAGGGGTGA+AGG - tig0024026:16261-16280 None:intergenic 65.0%
TCACCCCTGTCACCGGTCCA+AGG + tig0024026:16261-16280 Msa1413360:CDS 65.0%
!! TCCTCGGGGCCGATTTGGGT+GGG - tig0024026:18062-18081 None:intergenic 65.0%
!! AGGGTAGGGAGGGCTTTGGG+GGG - tig0024026:19312-19331 None:intergenic 65.0%
! GAGGGTAGGGAGGGCTTTGG+GGG - tig0024026:19313-19332 None:intergenic 65.0%
GGAGGGTAGGGAGGGCTTTG+GGG - tig0024026:19314-19333 None:intergenic 65.0%
!! CTCCTCGGGGCCGATTTGGG+TGG - tig0024026:18063-18082 None:intergenic 70.0%
GCCCACCCAAATCGGCCCCG+AGG + tig0024026:18058-18077 Msa1413360:intron 75.0%
Chromosome Type Strat End Strand Name
tig0024026 gene 15617 20126 15617 ID=Msa1413360;Name=Msa1413360
tig0024026 mRNA 15617 20126 15617 ID=Msa1413360-mRNA-1;Parent=Msa1413360;Name=Msa1413360-mRNA-1;_AED=0.09;_eAED=0.09;_QI=31|1|1|1|1|1|5|241|482
tig0024026 exon 15617 16601 15617 ID=Msa1413360-mRNA-1:exon:21107;Parent=Msa1413360-mRNA-1
tig0024026 exon 17511 17563 17511 ID=Msa1413360-mRNA-1:exon:21108;Parent=Msa1413360-mRNA-1
tig0024026 exon 17658 17868 17658 ID=Msa1413360-mRNA-1:exon:21109;Parent=Msa1413360-mRNA-1
tig0024026 exon 18465 18635 18465 ID=Msa1413360-mRNA-1:exon:21110;Parent=Msa1413360-mRNA-1
tig0024026 exon 19826 20126 19826 ID=Msa1413360-mRNA-1:exon:21111;Parent=Msa1413360-mRNA-1
tig0024026 five_prime_UTR 15617 15647 15617 ID=Msa1413360-mRNA-1:five_prime_utr;Parent=Msa1413360-mRNA-1
tig0024026 CDS 15648 16601 15648 ID=Msa1413360-mRNA-1:cds;Parent=Msa1413360-mRNA-1
tig0024026 CDS 17511 17563 17511 ID=Msa1413360-mRNA-1:cds;Parent=Msa1413360-mRNA-1
tig0024026 CDS 17658 17868 17658 ID=Msa1413360-mRNA-1:cds;Parent=Msa1413360-mRNA-1
tig0024026 CDS 18465 18635 18465 ID=Msa1413360-mRNA-1:cds;Parent=Msa1413360-mRNA-1
tig0024026 CDS 19826 19885 19826 ID=Msa1413360-mRNA-1:cds;Parent=Msa1413360-mRNA-1
tig0024026 three_prime_UTR 19886 20126 19886 ID=Msa1413360-mRNA-1:three_prime_utr;Parent=Msa1413360-mRNA-1
Gene Sequence

>Msa1413360

ATGGCAGCAGTAGCGATAGGAGTGAGGTGCTGCTGCTCATTGTCGTTTCCGTCTCATCATCGCAAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGATTATTACTATTATTACAGAAGAAGAAGAAGTAGAATCAATGCTTCTTCATTGTTTTGGGGATCTTCTAAGGACAACAACAAACATAATAACATTTCTTCTTCTTCTTCGCATCAGCAACAATTCAGCTTCAATGTTACCAGCACAACAGAATCTGAAGAAGAAAAAGATAAGATTATTACTGTTTCTTTTGTATCTTCAATTTCAGATATTCCATCCACCCAATGGGATGCATGTGCTCTTGATGCTACAGGAGGACCAGACAAGTTCAATCCATTTCTATCACATGCTTTTCTATCATCTTTAGAACTATCCTCTTCTTCTGTTAAGGAAAAGGGATGGACCCCACACCACATCGTCGCTAAGGATATTCATAATCATATTCTCGCTGTTGTTCCTCTCTATCTCAAGACCCATTCCTATGGTGAATTCGTTTTTGATCATTCTTGGGCCAATGCTTACTCTCATTTTTATGGTTCCAATTCTTATTATCCTAAGTTACAATCCTGTGTCCCCTTCACCCCTGTCACCGGTCCAAGGATCTTACTTCGTAACACTTCTTTCAAACATCATGTTTTTGACTTCATTGTTTCTGCTATCAAGGATCTCACTGCCATGTCTCAACTTTCTTCCTTCCATGTCACTTTTCCCTCTGAAAACGAGTGGCACAAATTCACTCAACAAGGTTTCCTCCCTAGGATTGGAATGCAGTATCACTGGACCAACCGCAACTATACTAATTTTGATGACTTCTTGATGGACTTGAAGCATAATAAAAGGAAAAAGATACGTCAAGAGCGCAAGAAGGTTGCAGCTCAGAACTTGATTATGAAACGCCTCCGCGGTTATGAAATAAAGGCAAAGCACTGGGATTCCTTCTACACCTTTTACAGGAACACAACTGATAACAAATGGGGTACTCCTTTCCTGACGAGGGAATTTTTTCATGAGATGGGATCAAAAATGGGAGATCAAGTACTACTTATTGTTGCTGAAGACAATGAGGAACTAGTAGCAGGTGCCCTAAATCTTATCGGAGGAGATACTTTGTTTGGGCGCCTATGGGGGTGTCATCCACAAACTTACTATCCATTTTTGCATTTTGAAGCATGTTATTATCAGGCAATTGAAGCAGCGATTGAACTCAATCTTAAAACAGTAGAAGCAGGAGCTCAGGGTGAACATAAGATTGAGCGTGGATATCTTCCAGTGACAACATATAGCTGCCATTACCTTATTGATGAAGATTTTAGGAAAGCTATAGAAGATTTTTTAGTTCGTGAATCTTCTCAGGTGAAGCTTGTTATGAAACTCTTGCGTGATTCTGGTCCTTTCAAGGAAGGTGTCCTGTAG

Protein sequence

>Msa1413360

MAAVAIGVRCCCSLSFPSHHRKSSSSSSSSSSDYYYYYRRRRSRINASSLFWGSSKDNNKHNNISSSSSHQQQFSFNVTSTTESEEEKDKIITVSFVSSISDIPSTQWDACALDATGGPDKFNPFLSHAFLSSLELSSSSVKEKGWTPHHIVAKDIHNHILAVVPLYLKTHSYGEFVFDHSWANAYSHFYGSNSYYPKLQSCVPFTPVTGPRILLRNTSFKHHVFDFIVSAIKDLTAMSQLSSFHVTFPSENEWHKFTQQGFLPRIGMQYHWTNRNYTNFDDFLMDLKHNKRKKIRQERKKVAAQNLIMKRLRGYEIKAKHWDSFYTFYRNTTDNKWGTPFLTREFFHEMGSKMGDQVLLIVAEDNEELVAGALNLIGGDTLFGRLWGCHPQTYYPFLHFEACYYQAIEAAIELNLKTVEAGAQGEHKIERGYLPVTTYSCHYLIDEDFRKAIEDFLVRESSQVKLVMKLLRDSGPFKEGVL*