AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0386520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386520 MtrunA17_Chr3g0144411 85.010 507 63 2 173 668 41 545 0.0 894
Msa0386520 MtrunA17_Chr3g0144411 78.058 278 49 2 1 278 28 293 9.90e-141 422
Msa0386520 MtrunA17_Chr3g0144391 75.764 491 117 2 179 668 23 512 0.0 769
Msa0386520 MtrunA17_Chr3g0144391 67.647 238 75 1 1 236 28 265 2.23e-105 329
Msa0386520 MtrunA17_Chr3g0144391 63.801 221 80 0 127 347 41 261 3.55e-89 287
Msa0386520 MtrunA17_Chr3g0144391 58.996 239 97 1 87 324 23 261 4.51e-85 276
Msa0386520 MtrunA17_Chr3g0144391 57.322 239 101 1 64 301 23 261 3.29e-81 266
Msa0386520 MtrunA17_Chr3g0144391 59.649 114 40 2 14 123 156 267 6.43e-32 130
Msa0386520 MtrunA17_Chr4g0034731 41.827 416 182 12 286 662 39 433 3.53e-95 300
Msa0386520 MtrunA17_Chr4g0034691 32.440 709 365 24 8 664 65 711 1.24e-93 305
Msa0386520 MtrunA17_Chr4g0034451 56.444 225 96 2 439 661 302 526 4.68e-93 298
Msa0386520 MtrunA17_Chr4g0034721 35.798 514 276 15 153 664 118 579 2.41e-92 298
Msa0386520 MtrunA17_Chr6g0485051 57.073 205 85 3 460 661 1 205 1.48e-70 228
Msa0386520 MtrunA17_Chr3g0144451 47.489 219 112 1 446 661 57 275 1.89e-69 228
Msa0386520 MtrunA17_Chr4g0034821 46.575 219 114 1 446 661 73 291 2.31e-66 220
Msa0386520 MtrunA17_Chr3g0138231 46.119 219 115 1 446 661 48 266 4.71e-66 218
Msa0386520 MtrunA17_Chr3g0144421 42.922 219 121 2 447 662 86 303 6.76e-61 206
Msa0386520 MtrunA17_Chr1g0147271 41.284 218 118 5 448 660 171 383 1.01e-45 167
Msa0386520 MtrunA17_Chr1g0147321 40.000 215 122 4 448 660 27 236 2.38e-45 162
Msa0386520 MtrunA17_Chr1g0147291 39.535 215 123 4 448 660 56 265 1.13e-44 160
Msa0386520 MtrunA17_Chr1g0147261 39.720 214 122 4 448 659 89 297 8.12e-44 159
Msa0386520 MtrunA17_Chr1g0147331 39.535 215 122 4 448 659 113 322 3.83e-43 158
Msa0386520 MtrunA17_Chr1g0147301 39.450 218 123 5 448 660 70 283 4.87e-43 156
Msa0386520 MtrunA17_Chr1g0146631 39.535 215 122 4 448 659 113 322 5.87e-43 157
Msa0386520 MtrunA17_Chr1g0147251 38.208 212 125 3 448 659 35 240 2.28e-41 150
Msa0386520 MtrunA17_Chr3g0139431 40.183 219 122 6 448 661 107 321 8.59e-41 151
Msa0386520 MtrunA17_Chr1g0147311 38.356 219 124 5 448 660 141 354 2.42e-40 151
Msa0386520 MtrunA17_Chr1g0147241 38.710 217 125 4 446 659 99 310 2.70e-38 144
Msa0386520 MtrunA17_Chr4g0034051 60.976 82 30 2 586 665 2 83 3.36e-27 105
Msa0386520 MtrunA17_Chr5g0413591 33.178 214 121 8 448 650 415 617 5.51e-25 110
Msa0386520 MtrunA17_Chr8g0365401 32.828 198 113 5 471 659 437 623 1.19e-24 108
Msa0386520 MtrunA17_Chr8g0365361 32.432 222 112 7 448 650 181 383 3.79e-24 105
Msa0386520 MtrunA17_Chr8g0365381 31.532 222 134 6 448 660 429 641 4.42e-24 107
Msa0386520 MtrunA17_Chr3g0117791 32.719 217 118 6 448 650 413 615 8.81e-24 106
Msa0386520 MtrunA17_Chr4g0034711 58.667 75 31 0 434 508 20 94 1.71e-23 95.9
Msa0386520 MtrunA17_Chr8g0355871 32.110 218 122 7 448 663 31 224 2.46e-21 93.6
Msa0386520 MtrunA17_Chr4g0076231 35.256 156 96 4 507 660 5 157 1.09e-20 89.4
Msa0386520 MtrunA17_Chr8g0355321 36.478 159 89 6 504 661 155 302 2.08e-19 89.7
Msa0386520 MtrunA17_Chr5g0412951 27.979 193 122 5 474 659 25 207 1.92e-18 84.7
Msa0386520 MtrunA17_Chr8g0355331 34.177 158 92 5 505 661 275 421 2.80e-18 88.2
Msa0386520 MtrunA17_Chr5g0412981 29.348 184 113 5 474 650 226 399 3.34e-18 87.4
Msa0386520 MtrunA17_Chr5g0412981 28.249 177 110 5 474 643 18 184 5.59e-15 77.8
Msa0386520 MtrunA17_Chr5g0412991 29.348 184 113 5 474 650 226 399 3.56e-18 87.4
Msa0386520 MtrunA17_Chr5g0412991 28.249 177 110 5 474 643 18 184 4.80e-15 77.8
Msa0386520 MtrunA17_Chr8g0355841 34.667 150 88 5 512 661 370 509 2.09e-17 85.9
Msa0386520 MtrunA17_Chr8g0355311 32.432 148 90 5 514 661 53 190 3.05e-17 80.9
Msa0386520 MtrunA17_Chr8g0355861 30.233 215 128 7 447 661 68 260 3.33e-17 82.4
Msa0386520 MtrunA17_Chr4g0034021 66.038 53 18 0 434 486 204 256 6.96e-16 78.2
Msa0386520 MtrunA17_Chr8g0355831 33.333 141 84 4 521 661 221 351 7.66e-15 76.6
Msa0386520 MtrunA17_Chr1g0168781 32.000 150 93 4 512 661 119 259 8.18e-14 72.4
Msa0386520 MtrunA17_Chr8g0371951 38.667 75 43 2 578 650 14 87 3.30e-11 60.1
Msa0386520 MtrunA17_Chr5g0413021 37.037 81 49 2 580 659 48 127 5.00e-11 60.8
Msa0386520 MtrunA17_Chr4g0034031 42.857 56 32 0 507 562 1 56 6.50e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386520 AT1G49320.1 34.307 274 164 6 399 660 9 278 5.36e-45 162
Msa0386520 AT5G25610.1 38.073 218 125 6 448 659 176 389 7.03e-39 148
Msa0386520 AT1G70370.2 32.727 220 134 6 448 660 411 623 2.75e-25 111
Msa0386520 AT1G70370.1 32.727 220 134 6 448 660 411 623 2.75e-25 111
Msa0386520 AT1G23760.1 33.166 199 113 5 471 660 432 619 6.53e-24 107
Msa0386520 AT1G60390.1 29.798 198 117 5 472 659 435 620 1.40e-21 99.8

Find 190 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATCAAGTTTATCTTGA+TGG 0.211968 3_1:-90247704 Msa0386520:CDS
AGGATATCTATGCTCCTAAA+TGG 0.228868 3_1:-90246779 Msa0386520:CDS
GAATTTGTTCATAGTGTTCT+TGG 0.231624 3_1:-90246891 Msa0386520:CDS
TTTGCAGAACTACACCATTT+TGG 0.234201 3_1:-90246811 Msa0386520:CDS
TCCCTGTAAAGCACGTTCTA+TGG 0.238519 3_1:-90246539 Msa0386520:CDS
GTCTTTCATGTCTTCACCTT+GGG 0.240047 3_1:+90246989 None:intergenic
TCCAATCAAGTTTATCTTGA+TGG 0.240985 3_1:-90247497 Msa0386520:CDS
GATAAACTTGATTGAAGTTT+GGG 0.247881 3_1:+90247711 None:intergenic
AGGTCTTCAAAGTTCTTCTA+AGG 0.253474 3_1:-90246689 Msa0386520:CDS
ATCCTTTGAGATTTCCAAAA+TGG 0.256902 3_1:+90246797 None:intergenic
GATAAACTTGATTGGAGTTT+GGG 0.256939 3_1:+90247504 None:intergenic
TCTAATCAAGTTTATCTTGA+TGG 0.268313 3_1:-90247428 Msa0386520:CDS
GATAAACTTGATTAGAGTTT+GGG 0.274295 3_1:+90247435 None:intergenic
GATAAACTTGGTTGGAGTTT+GGG 0.274888 3_1:+90247573 None:intergenic
GATAAACTTGGTTGGAGTTT+GGG 0.274888 3_1:+90248056 None:intergenic
TCCAATCGAGTTTATCTTGA+TGG 0.276513 3_1:-90247842 Msa0386520:CDS
GGGTGACAAGCTACCCATTT+AGG 0.279438 3_1:+90246765 None:intergenic
TCCAACCAAGTTTATCTTGA+TGG 0.283723 3_1:-90247566 Msa0386520:CDS
TCCAATCAAGTTTACCTTGA+TGG 0.284115 3_1:-90247359 Msa0386520:CDS
TCCAATCAAGTTTACCTTGA+TGG 0.284115 3_1:-90247635 Msa0386520:CDS
GCGAACTCCATGAAGAAAAT+TGG 0.289076 3_1:-90247245 Msa0386520:CDS
GCCCATAGAACGTGCTTTAC+AGG 0.291191 3_1:+90246537 None:intergenic
TACAATCAAGTTTACCTTGA+TGG 0.294768 3_1:-90247980 Msa0386520:CDS
TCTAATCAAGTTTACCTTGA+TGG 0.295765 3_1:-90248118 Msa0386520:CDS
AGATAAACTTGATTGAAGTT+TGG 0.296038 3_1:+90247710 None:intergenic
TCCAATCAAGTTTACCTTGA+TGG 0.298027 3_1:-90247773 Msa0386520:CDS
AGATAAACTTGGTTGGAGTT+TGG 0.299383 3_1:+90247572 None:intergenic
CTCAATCAGGCTTACCTTGA+TGG 0.299708 3_1:-90247290 Msa0386520:CDS
AGATAAACTTGATTGGAGTT+TGG 0.300825 3_1:+90247503 None:intergenic
GTTGATCAGCCTTACCTTGA+TGG 0.301941 3_1:-90248457 Msa0386520:CDS
AGATAAACTTGATTAGAGTT+TGG 0.304429 3_1:+90247434 None:intergenic
AGATAAACTTGGTTGGAGTT+TGG 0.312080 3_1:+90248055 None:intergenic
AGTTGTGTGAATGTTATATT+TGG 0.312223 3_1:+90246860 None:intergenic
TTACCTAGATGGATGGTTAA+AGG 0.317562 3_1:-90248245 Msa0386520:CDS
AGGTAAACTTGATTGGAGTT+AGG 0.321370 3_1:+90247365 None:intergenic
AGGTAAACTTGATTGGAGTT+AGG 0.321370 3_1:+90247779 None:intergenic
AGGTAAACTTGATTGTAGTT+AGG 0.321428 3_1:+90247986 None:intergenic
AGGTAAACTTGATTAGAGTT+AGG 0.324677 3_1:+90248124 None:intergenic
TGGAGACATAATGGATGCTT+TGG 0.329852 3_1:-90246658 Msa0386520:CDS
AGGTAAACTTGATTGGAGTT+AGG 0.334772 3_1:+90248193 None:intergenic
CTCAATCAGGCTTACCTTGA+TGG 0.351388 3_1:-90247911 Msa0386520:CDS
TCTAATCCAAGTTATCTTGA+TGG 0.360948 3_1:-90248394 Msa0386520:CDS
AGTTGAAATATAAAATGATT+AGG 0.362732 3_1:+90246603 None:intergenic
GGTAAACTTGATTGTAGTTA+GGG 0.371166 3_1:+90247987 None:intergenic
TCCAATCAAGTTTACCTAGA+TGG 0.372314 3_1:-90248256 Msa0386520:CDS
TTGGTTCAGTTGGTGGCCTC+TGG 0.375839 3_1:+90246504 None:intergenic
GTTCTTCTAAGGGGTCAATA+TGG 0.383693 3_1:-90246678 Msa0386520:CDS
TCGATCTTGCTTTCTCAACT+TGG 0.386255 3_1:+90247528 None:intergenic
ACCAATCAAGTTTACCTAGA+TGG 0.387215 3_1:-90248325 Msa0386520:CDS
AGGTAAACTTGATTGGAGTT+AGG 0.390322 3_1:+90247641 None:intergenic
TGGCAGTAGTAAAGAGCATA+AGG 0.391483 3_1:+90246732 None:intergenic
CTAGTTCCCTTTGGTTCAGT+TGG 0.397858 3_1:+90246494 None:intergenic
TTGATCTTGCCTTCTCAACT+TGG 0.398535 3_1:+90247597 None:intergenic
TCGATATTGCTTTCTCAACT+TGG 0.402306 3_1:+90247459 None:intergenic
GGTAAACTTGATTGGAGTTA+GGG 0.403936 3_1:+90247366 None:intergenic
GGTAAACTTGATTGGAGTTA+GGG 0.403936 3_1:+90247780 None:intergenic
GGTAAACTTGATTGGAGTTA+GGG 0.403936 3_1:+90248194 None:intergenic
GAGAATAGTTGAAGAAGGCT+TGG 0.410178 3_1:+90247029 None:intergenic
TCCAATCAAGTTTACCTTGA+CGG 0.412584 3_1:-90248187 Msa0386520:CDS
GTTCCCTTTGGTTCAGTTGG+TGG 0.415275 3_1:+90246497 None:intergenic
TGAGAGAGAATAGTTGAAGA+AGG 0.421944 3_1:+90247024 None:intergenic
GGTAAACTTGATTAGAGTTA+GGG 0.423201 3_1:+90248125 None:intergenic
AACCATCCATCAAGATAACT+TGG 0.424143 3_1:+90248388 None:intergenic
CGTGCTTTACAGGGAAGAAA+TGG 0.426994 3_1:+90246547 None:intergenic
ATCAGCCTTACCTTGATGGC+TGG 0.428156 3_1:-90248453 Msa0386520:CDS
ACTATCGATGATCTTTATGT+AGG 0.428448 3_1:-90247146 Msa0386520:CDS
TCCATCTAGGTAAACTTGAT+TGG 0.430236 3_1:+90248255 None:intergenic
TTGGTGGCCTCTGGTGGGAG+TGG 0.432130 3_1:+90246513 None:intergenic
CAACTACTTGGAATGAAGCC+TGG 0.433769 3_1:-90246585 Msa0386520:CDS
TCCATCAAGGTAAACTTGAT+TGG 0.436782 3_1:+90247358 None:intergenic
TCCATCAAGGTAAACTTGAT+TGG 0.436782 3_1:+90247634 None:intergenic
GTTCAGTTGGTGGCCTCTGG+TGG 0.441778 3_1:+90246507 None:intergenic
TATCTTTCAACCATCCATCT+AGG 0.444354 3_1:+90248311 None:intergenic
TGTCTTTCATGTCTTCACCT+TGG 0.444739 3_1:+90246988 None:intergenic
AACTTGATTGTAGTTAGGGT+TGG 0.447399 3_1:+90247991 None:intergenic
GAAAGATACCAAGGATCAAA+TGG 0.449700 3_1:-90247330 Msa0386520:CDS
GCCATCAAGGTAAACTTGAT+TGG 0.450457 3_1:+90247772 None:intergenic
AACTATCCACAACCTCAATC+AGG 0.453031 3_1:-90247924 Msa0386520:CDS
AAGTTAGCATATTCTCTGAT+AGG 0.453535 3_1:+90247101 None:intergenic
GTGAATTTGAACCCACAAAA+GGG 0.456334 3_1:-90246953 Msa0386520:CDS
GGTAAGCCTGATTGAGGTTG+TGG 0.457575 3_1:+90247918 None:intergenic
CAAGACATGGCAGAATCAAA+AGG 0.457794 3_1:-90247221 Msa0386520:CDS
ACCAATACACAACCTCAATC+AGG 0.459181 3_1:-90247303 Msa0386520:CDS
TCCGTCAAGGTAAACTTGAT+TGG 0.460129 3_1:+90248186 None:intergenic
TCCATCAAGATAAACTTGAT+TGG 0.461282 3_1:+90247496 None:intergenic
GAAAGACACCAAAGATCAAA+AGG 0.461407 3_1:-90247951 Msa0386520:CDS
ATCAAGTTTACCTTGATGGC+TGG 0.461599 3_1:-90247976 Msa0386520:CDS
GGGTCAATATGGAGACATAA+TGG 0.464907 3_1:-90246667 Msa0386520:CDS
TCCAACCAAGTTTATCTTGA+CGG 0.468204 3_1:-90248049 Msa0386520:CDS
TGTGAATTTGAACCCACAAA+AGG 0.468537 3_1:-90246954 Msa0386520:CDS
AGAGCATAAGGGTAAGGCCT+AGG 0.470306 3_1:+90246744 None:intergenic
AACTACTTGGAATGAAGCCT+GGG 0.472218 3_1:-90246584 Msa0386520:CDS
TCCATCTAGGTAAACTTGAT+TGG 0.472763 3_1:+90248324 None:intergenic
ACTAGCTATCCCACAACATC+AGG 0.475940 3_1:-90246840 Msa0386520:CDS
AACTTGATTGGAGTTAGGGG+TGG 0.478066 3_1:+90247370 None:intergenic
AACTTGATTGGAGTTAGGGG+TGG 0.478066 3_1:+90247784 None:intergenic
AACTTGATTGGAGTTAGGGG+TGG 0.478066 3_1:+90248198 None:intergenic
CCCTGTAAAGCACGTTCTAT+GGG 0.478082 3_1:-90246538 Msa0386520:CDS
GGTAGTTGCGACTTGGAGAA+AGG 0.479066 3_1:+90247050 None:intergenic
GCCTGATTGAGGTTGTGTAT+TGG 0.481303 3_1:+90247302 None:intergenic
GGAGACATAATGGATGCTTT+GGG 0.482669 3_1:-90246657 Msa0386520:CDS
CTACCTAGACATAGGGAGTA+AGG 0.491781 3_1:-90246709 Msa0386520:CDS
ATCAGGCTTACCTTGATGGT+TGG 0.493059 3_1:-90247286 Msa0386520:CDS
TAATGAAGTAGGACAAGCTT+TGG 0.493432 3_1:+90246926 None:intergenic
TTCAGTTGGTGGCCTCTGGT+GGG 0.494537 3_1:+90246508 None:intergenic
GATAAACTCGATTGGAGTTG+TGG 0.497172 3_1:+90247849 None:intergenic
ATCAAGTTTACCTTGATGGC+TGG 0.497883 3_1:-90247769 Msa0386520:CDS
TATCCTTTAACCATCCATCT+AGG 0.498476 3_1:+90248242 None:intergenic
GAAAGATACCAAGAATCAAA+AGG 0.504634 3_1:-90248296 Msa0386520:CDS
ATCAGGCTTACCTTGATGGC+TGG 0.504911 3_1:-90247907 Msa0386520:CDS
GGATATCTATGCTCCTAAAT+GGG 0.506971 3_1:-90246778 Msa0386520:CDS
ATCAAGTTTATCTTGATGGA+TGG 0.507762 3_1:-90247424 Msa0386520:CDS
AAGGCTTGGTAGTTGCGACT+TGG 0.508594 3_1:+90247043 None:intergenic
CTAACTTGAATGCCTCTGTA+TGG 0.508943 3_1:+90247177 None:intergenic
ATCAAGTTTATCTTGATGGA+TGG 0.510245 3_1:-90247493 Msa0386520:CDS
ATCAAGTTTATCTTGATGGA+TGG 0.510245 3_1:-90247700 Msa0386520:CDS
ATAAACTCGATTGGAGTTGT+GGG 0.512497 3_1:+90247850 None:intergenic
CCAACCAAGTTTATCTTGAC+GGG 0.512790 3_1:-90248048 Msa0386520:CDS
TGTCTTTCAACCAGCCATCA+AGG 0.516147 3_1:+90247966 None:intergenic
CATCTTTCAGCCAGCCATCA+AGG 0.517526 3_1:+90247759 None:intergenic
ACCATCCATCAAGATAAACT+TGG 0.519057 3_1:+90247561 None:intergenic
TGGCTGGTTAAAAGATAGTC+GGG 0.523097 3_1:-90247891 Msa0386520:CDS
ATCAAGTTTACCTTGATGGA+TGG 0.523440 3_1:-90248114 Msa0386520:CDS
ATCGAGTTTATCTTGATGGA+TGG 0.523903 3_1:-90247838 Msa0386520:CDS
TTAAGCCAGCCATCAAGGTA+AGG 0.525753 3_1:+90248448 None:intergenic
ATCAAGTTTACCTTGATGGA+TGG 0.525923 3_1:-90247355 Msa0386520:CDS
ACCAAGTTTATCTTGATGGA+TGG 0.525923 3_1:-90247562 Msa0386520:CDS
ATCAAGTTTACCTTGATGGA+TGG 0.525923 3_1:-90247631 Msa0386520:CDS
GATTCATGTCAGACGTGTCT+AGG 0.529464 3_1:+90246625 None:intergenic
ATGGCTGGTTAAAAGATAGT+CGG 0.532803 3_1:-90247892 Msa0386520:CDS
TCTTTCATGTCTTCACCTTG+GGG 0.533710 3_1:+90246990 None:intergenic
ATAAACTTGGTTGGAGTTTG+GGG 0.533931 3_1:+90247574 None:intergenic
TAGTAAAGAGCATAAGGGTA+AGG 0.534900 3_1:+90246738 None:intergenic
AACTCGATTGGAGTTGTGGG+TGG 0.536216 3_1:+90247853 None:intergenic
GGTCTTCAAAGTTCTTCTAA+GGG 0.536641 3_1:-90246688 Msa0386520:CDS
AATGGGTAGCTTGTCACCCT+AGG 0.538892 3_1:-90246761 Msa0386520:CDS
AACTTGATTGGAGTTAGGAG+TGG 0.538945 3_1:+90247646 None:intergenic
CTTGATGGATGGTTGAAAGA+TGG 0.539962 3_1:-90247413 Msa0386520:CDS
CTTGATGGATGGTTGAAAGA+TGG 0.539962 3_1:-90247551 Msa0386520:CDS
ATAAACTTGGTTGGAGTTTG+GGG 0.540923 3_1:+90248057 None:intergenic
GGTAAACTTGATTGGTGTTG+TGG 0.546018 3_1:+90248332 None:intergenic
GAAAGATAGCCAAGTTGAGA+AGG 0.546728 3_1:-90247606 Msa0386520:CDS
GGCAGTAGTAAAGAGCATAA+GGG 0.547129 3_1:+90246733 None:intergenic
TCCATCAAGATAAACTCGAT+TGG 0.551426 3_1:+90247841 None:intergenic
GAGCATAAGGGTAAGGCCTA+GGG 0.551678 3_1:+90246745 None:intergenic
ATCCAAGTTATCTTGATGGA+TGG 0.552457 3_1:-90248390 Msa0386520:CDS
GGTAAACTTGATTGGAGTCG+TGG 0.553661 3_1:+90248263 None:intergenic
TATCTTTCAACCATCCATCA+AGG 0.553950 3_1:+90247345 None:intergenic
CAAACGTGCACCTGATGTTG+TGG 0.555390 3_1:+90246830 None:intergenic
CCCATAGAACGTGCTTTACA+GGG 0.559017 3_1:+90246538 None:intergenic
ATCAAGTTTACCTTGACGGA+TGG 0.560773 3_1:-90248183 Msa0386520:CDS
ATCAAGTTTACCTAGATGGA+TGG 0.561030 3_1:-90248252 Msa0386520:CDS
ATCAAGTTTACCTAGATGGA+TGG 0.563100 3_1:-90248321 Msa0386520:CDS
TACTGCCACTACCTAGACAT+AGG 0.566616 3_1:-90246717 Msa0386520:CDS
AAGACATGGCAGAATCAAAA+GGG 0.567319 3_1:-90247220 Msa0386520:CDS
ACCACCCGTCAAGATAAACT+TGG 0.569100 3_1:+90248044 None:intergenic
TCCATCAAGATAAACTTGGT+TGG 0.570341 3_1:+90247565 None:intergenic
TACTCCCTATGTCTAGGTAG+TGG 0.570771 3_1:+90246712 None:intergenic
ACTGCCACTACCTAGACATA+GGG 0.575542 3_1:-90246716 Msa0386520:CDS
GTAAACTTGATTGGAGTCGT+GGG 0.579561 3_1:+90248264 None:intergenic
ACTCGATTGGAGTTGTGGGT+GGG 0.582962 3_1:+90247854 None:intergenic
AGACCTTACTCCCTATGTCT+AGG 0.584376 3_1:+90246706 None:intergenic
CATCAAGGTAAGCCTGATTG+AGG 0.584619 3_1:+90247291 None:intergenic
CATCAAGGTAAGCCTGATTG+AGG 0.584619 3_1:+90247912 None:intergenic
AGTCTTTCAACCAACCATCA+AGG 0.584877 3_1:+90247276 None:intergenic
TATCTTTCAACCATCCATCA+AGG 0.588448 3_1:+90247621 None:intergenic
TATCTTTCAACCATCCATCA+AGG 0.588448 3_1:+90248104 None:intergenic
AGCATGGACTCTAATGAAGT+AGG 0.591847 3_1:+90246915 None:intergenic
CCCGTCAAGATAAACTTGGT+TGG 0.599307 3_1:+90248048 None:intergenic
CTCACAAAAGATTCTCCCCA+AGG 0.607171 3_1:-90247005 Msa0386520:CDS
AAACGTGCACCTGATGTTGT+GGG 0.607189 3_1:+90246831 None:intergenic
ACTATGAACAAATTCAAGCA+TGG 0.607524 3_1:+90246899 None:intergenic
AAAGATAGCCAAGTTGAGCA+AGG 0.607835 3_1:-90247674 Msa0386520:CDS
GTCTTCAAAGTTCTTCTAAG+GGG 0.613953 3_1:-90246687 Msa0386520:CDS
ATAAACTTGATTAGAGTTTG+GGG 0.616239 3_1:+90247436 None:intergenic
ATAAACTTGATTGGAGTTTG+GGG 0.619713 3_1:+90247505 None:intergenic
ACAGGGAAGAAATGGCACAT+AGG 0.619730 3_1:+90246555 None:intergenic
TGGCACATAGGAGCTTCCCC+AGG 0.628176 3_1:+90246567 None:intergenic
ATGGGCACCACTCCCACCAG+AGG 0.630918 3_1:-90246520 Msa0386520:CDS
TGAATTTGAACCCACAAAAG+GGG 0.632371 3_1:-90246952 Msa0386520:CDS
ATAAACTTGATTGAAGTTTG+GGG 0.634939 3_1:+90247712 None:intergenic
ACCAAGTTTATCTTGACGGG+TGG 0.636426 3_1:-90248045 Msa0386520:CDS
GAAGAAAATTGGACAAGACA+TGG 0.638239 3_1:-90247234 Msa0386520:CDS
GTAAACTTGATTGGAGTTAG+GGG 0.649022 3_1:+90247367 None:intergenic
GTAAACTTGATTGGAGTTAG+GGG 0.649022 3_1:+90247781 None:intergenic
GTAAACTTGATTGGAGTTAG+GGG 0.649022 3_1:+90248195 None:intergenic
TCATGTCAGACGTGTCTAGG+TGG 0.678767 3_1:+90246628 None:intergenic
TGGATGGTTGAAAGATACCA+AGG 0.679634 3_1:-90247339 Msa0386520:CDS
TTCAAAAGTTGACCATACAG+AGG 0.702856 3_1:-90247189 Msa0386520:CDS
ACTACTTGGAATGAAGCCTG+GGG 0.737264 3_1:-90246583 Msa0386520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTGAAATATAAAATGATT+AGG + chr3_1:90248402-90248421 None:intergenic 15.0%
!! AGTTGAAATATAAAATGATT+AGG + chr3_1:90248402-90248421 None:intergenic 15.0%
!!! CATTTTATATTTCAACTACT+TGG - chr3_1:90248405-90248424 Msa0386520:CDS 20.0%
!!! CATTTTATATTTCAACTACT+TGG - chr3_1:90248405-90248424 Msa0386520:CDS 20.0%
!!! TTTAGTTTTTTGTTCTTCAG+TGG + chr3_1:90246587-90246606 None:intergenic 25.0%
!!! ATAGCTTTTTTGTTTTCTTC+GGG + chr3_1:90246650-90246669 None:intergenic 25.0%
!!! GATAGCTTTTTTGTTTTCTT+CGG + chr3_1:90246651-90246670 None:intergenic 25.0%
!!! GGATTTTGTTTTTTGAACTT+GGG + chr3_1:90246786-90246805 None:intergenic 25.0%
!!! TGGATTTTGTTTTTTGAACT+TGG + chr3_1:90246787-90246806 None:intergenic 25.0%
!!! AGTTTTTTCCTTTTGATCTT+TGG + chr3_1:90247062-90247081 None:intergenic 25.0%
! ATAAACTTGATTGAAGTTTG+GGG + chr3_1:90247293-90247312 None:intergenic 25.0%
! GATAAACTTGATTGAAGTTT+GGG + chr3_1:90247294-90247313 None:intergenic 25.0%
! AGATAAACTTGATTGAAGTT+TGG + chr3_1:90247295-90247314 None:intergenic 25.0%
! TTCAATCAAGTTTATCTTGA+TGG - chr3_1:90247298-90247317 Msa0386520:CDS 25.0%
! ATAAACTTGATTAGAGTTTG+GGG + chr3_1:90247569-90247588 None:intergenic 25.0%
! GATAAACTTGATTAGAGTTT+GGG + chr3_1:90247570-90247589 None:intergenic 25.0%
! AGATAAACTTGATTAGAGTT+TGG + chr3_1:90247571-90247590 None:intergenic 25.0%
! TCTAATCAAGTTTATCTTGA+TGG - chr3_1:90247574-90247593 Msa0386520:CDS 25.0%
! AGTTGTGTGAATGTTATATT+TGG + chr3_1:90248145-90248164 None:intergenic 25.0%
!!! TTTAGTTTTTTGTTCTTCAG+TGG + chr3_1:90246587-90246606 None:intergenic 25.0%
!!! ATAGCTTTTTTGTTTTCTTC+GGG + chr3_1:90246650-90246669 None:intergenic 25.0%
!!! GATAGCTTTTTTGTTTTCTT+CGG + chr3_1:90246651-90246670 None:intergenic 25.0%
!!! GGATTTTGTTTTTTGAACTT+GGG + chr3_1:90246786-90246805 None:intergenic 25.0%
!!! TGGATTTTGTTTTTTGAACT+TGG + chr3_1:90246787-90246806 None:intergenic 25.0%
!!! AGTTTTTTCCTTTTGATCTT+TGG + chr3_1:90247062-90247081 None:intergenic 25.0%
! ATAAACTTGATTGAAGTTTG+GGG + chr3_1:90247293-90247312 None:intergenic 25.0%
! GATAAACTTGATTGAAGTTT+GGG + chr3_1:90247294-90247313 None:intergenic 25.0%
! AGATAAACTTGATTGAAGTT+TGG + chr3_1:90247295-90247314 None:intergenic 25.0%
! TTCAATCAAGTTTATCTTGA+TGG - chr3_1:90247298-90247317 Msa0386520:CDS 25.0%
! ATAAACTTGATTAGAGTTTG+GGG + chr3_1:90247569-90247588 None:intergenic 25.0%
! GATAAACTTGATTAGAGTTT+GGG + chr3_1:90247570-90247589 None:intergenic 25.0%
! AGATAAACTTGATTAGAGTT+TGG + chr3_1:90247571-90247590 None:intergenic 25.0%
! TCTAATCAAGTTTATCTTGA+TGG - chr3_1:90247574-90247593 Msa0386520:CDS 25.0%
! AGTTGTGTGAATGTTATATT+TGG + chr3_1:90248145-90248164 None:intergenic 25.0%
TCTAATCCAAGTTATCTTGA+TGG - chr3_1:90246608-90246627 Msa0386520:CDS 30.0%
GAAAGATACCAAGAATCAAA+AGG - chr3_1:90246706-90246725 Msa0386520:CDS 30.0%
!! AGTCTTTTCCTTTTGATTCT+TGG + chr3_1:90246717-90246736 None:intergenic 30.0%
! GAATTTTGCTTTCTCAACTT+GGG + chr3_1:90246855-90246874 None:intergenic 30.0%
! TGAATTTTGCTTTCTCAACT+TGG + chr3_1:90246856-90246875 None:intergenic 30.0%
GGTAAACTTGATTAGAGTTA+GGG + chr3_1:90246880-90246899 None:intergenic 30.0%
AGGTAAACTTGATTAGAGTT+AGG + chr3_1:90246881-90246900 None:intergenic 30.0%
TCTAATCAAGTTTACCTTGA+TGG - chr3_1:90246884-90246903 Msa0386520:CDS 30.0%
GGTAAACTTGATTGTAGTTA+GGG + chr3_1:90247018-90247037 None:intergenic 30.0%
AGGTAAACTTGATTGTAGTT+AGG + chr3_1:90247019-90247038 None:intergenic 30.0%
TACAATCAAGTTTACCTTGA+TGG - chr3_1:90247022-90247041 Msa0386520:CDS 30.0%
! TGGATTTTTCTTTCTCAACA+TGG + chr3_1:90247201-90247220 None:intergenic 30.0%
! TGATTTTGCTTTCTCAAGTT+GGG + chr3_1:90247269-90247288 None:intergenic 30.0%
! TTGATTTTGCTTTCTCAAGT+TGG + chr3_1:90247270-90247289 None:intergenic 30.0%
ATCAAGTTTATCTTGATGGA+TGG - chr3_1:90247302-90247321 Msa0386520:CDS 30.0%
ATAAACTTGATTGGAGTTTG+GGG + chr3_1:90247500-90247519 None:intergenic 30.0%
GATAAACTTGATTGGAGTTT+GGG + chr3_1:90247501-90247520 None:intergenic 30.0%
AGATAAACTTGATTGGAGTT+TGG + chr3_1:90247502-90247521 None:intergenic 30.0%
TCCAATCAAGTTTATCTTGA+TGG - chr3_1:90247505-90247524 Msa0386520:CDS 30.0%
TCCATCAAGATAAACTTGAT+TGG + chr3_1:90247302-90247321 None:intergenic 30.0%
ATCAAGTTTATCTTGATGGA+TGG - chr3_1:90247302-90247321 Msa0386520:CDS 30.0%
ATCAAGTTTATCTTGATGGA+TGG - chr3_1:90247302-90247321 Msa0386520:CDS 30.0%
ACTATCGATGATCTTTATGT+AGG - chr3_1:90247856-90247875 Msa0386520:CDS 30.0%
AAGTTAGCATATTCTCTGAT+AGG + chr3_1:90247904-90247923 None:intergenic 30.0%
!!! ATGTAGTCAGCTACTTTTTT+TGG + chr3_1:90247931-90247950 None:intergenic 30.0%
ACTATGAACAAATTCAAGCA+TGG + chr3_1:90248106-90248125 None:intergenic 30.0%
! GAATTTGTTCATAGTGTTCT+TGG - chr3_1:90248111-90248130 Msa0386520:CDS 30.0%
!! ATCCTTTGAGATTTCCAAAA+TGG + chr3_1:90248208-90248227 None:intergenic 30.0%
TCTAATCCAAGTTATCTTGA+TGG - chr3_1:90246608-90246627 Msa0386520:CDS 30.0%
GAAAGATACCAAGAATCAAA+AGG - chr3_1:90246706-90246725 Msa0386520:CDS 30.0%
!! AGTCTTTTCCTTTTGATTCT+TGG + chr3_1:90246717-90246736 None:intergenic 30.0%
! GAATTTTGCTTTCTCAACTT+GGG + chr3_1:90246855-90246874 None:intergenic 30.0%
! TGAATTTTGCTTTCTCAACT+TGG + chr3_1:90246856-90246875 None:intergenic 30.0%
GGTAAACTTGATTAGAGTTA+GGG + chr3_1:90246880-90246899 None:intergenic 30.0%
AGGTAAACTTGATTAGAGTT+AGG + chr3_1:90246881-90246900 None:intergenic 30.0%
TCTAATCAAGTTTACCTTGA+TGG - chr3_1:90246884-90246903 Msa0386520:CDS 30.0%
GGTAAACTTGATTGTAGTTA+GGG + chr3_1:90247018-90247037 None:intergenic 30.0%
AGGTAAACTTGATTGTAGTT+AGG + chr3_1:90247019-90247038 None:intergenic 30.0%
TACAATCAAGTTTACCTTGA+TGG - chr3_1:90247022-90247041 Msa0386520:CDS 30.0%
! TGGATTTTTCTTTCTCAACA+TGG + chr3_1:90247201-90247220 None:intergenic 30.0%
! TGATTTTGCTTTCTCAAGTT+GGG + chr3_1:90247269-90247288 None:intergenic 30.0%
! TTGATTTTGCTTTCTCAAGT+TGG + chr3_1:90247270-90247289 None:intergenic 30.0%
ATCAAGTTTATCTTGATGGA+TGG - chr3_1:90247302-90247321 Msa0386520:CDS 30.0%
ATAAACTTGATTGGAGTTTG+GGG + chr3_1:90247500-90247519 None:intergenic 30.0%
GATAAACTTGATTGGAGTTT+GGG + chr3_1:90247501-90247520 None:intergenic 30.0%
AGATAAACTTGATTGGAGTT+TGG + chr3_1:90247502-90247521 None:intergenic 30.0%
TCCAATCAAGTTTATCTTGA+TGG - chr3_1:90247505-90247524 Msa0386520:CDS 30.0%
TCCATCAAGATAAACTTGAT+TGG + chr3_1:90247302-90247321 None:intergenic 30.0%
ATCAAGTTTATCTTGATGGA+TGG - chr3_1:90247302-90247321 Msa0386520:CDS 30.0%
ATCAAGTTTATCTTGATGGA+TGG - chr3_1:90247302-90247321 Msa0386520:CDS 30.0%
ACTATCGATGATCTTTATGT+AGG - chr3_1:90247856-90247875 Msa0386520:CDS 30.0%
AAGTTAGCATATTCTCTGAT+AGG + chr3_1:90247904-90247923 None:intergenic 30.0%
!!! ATGTAGTCAGCTACTTTTTT+TGG + chr3_1:90247931-90247950 None:intergenic 30.0%
ACTATGAACAAATTCAAGCA+TGG + chr3_1:90248106-90248125 None:intergenic 30.0%
! GAATTTGTTCATAGTGTTCT+TGG - chr3_1:90248111-90248130 Msa0386520:CDS 30.0%
!! ATCCTTTGAGATTTCCAAAA+TGG + chr3_1:90248208-90248227 None:intergenic 30.0%
ATCCAAGTTATCTTGATGGA+TGG - chr3_1:90246612-90246631 Msa0386520:CDS 35.0%
AACCATCCATCAAGATAACT+TGG + chr3_1:90246617-90246636 None:intergenic 35.0%
ACCAATCAAGTTTACCTAGA+TGG - chr3_1:90246677-90246696 Msa0386520:CDS 35.0%
TCCATCTAGGTAAACTTGAT+TGG + chr3_1:90246681-90246700 None:intergenic 35.0%
ATCAAGTTTACCTAGATGGA+TGG - chr3_1:90246681-90246700 Msa0386520:CDS 35.0%
TATCTTTCAACCATCCATCT+AGG + chr3_1:90246694-90246713 None:intergenic 35.0%
TCCAATCAAGTTTACCTAGA+TGG - chr3_1:90246746-90246765 Msa0386520:CDS 35.0%
TCCATCTAGGTAAACTTGAT+TGG + chr3_1:90246681-90246700 None:intergenic 35.0%
ATCAAGTTTACCTAGATGGA+TGG - chr3_1:90246681-90246700 Msa0386520:CDS 35.0%
TTACCTAGATGGATGGTTAA+AGG - chr3_1:90246757-90246776 Msa0386520:CDS 35.0%
TATCCTTTAACCATCCATCT+AGG + chr3_1:90246763-90246782 None:intergenic 35.0%
GTAAACTTGATTGGAGTTAG+GGG + chr3_1:90246810-90246829 None:intergenic 35.0%
GGTAAACTTGATTGGAGTTA+GGG + chr3_1:90246811-90246830 None:intergenic 35.0%
AGGTAAACTTGATTGGAGTT+AGG + chr3_1:90246812-90246831 None:intergenic 35.0%
TCCAATCAAGTTTACCTTGA+CGG - chr3_1:90246815-90246834 Msa0386520:CDS 35.0%
ATCAAGTTTACCTTGATGGA+TGG - chr3_1:90246888-90246907 Msa0386520:CDS 35.0%
TATCTTTCAACCATCCATCA+AGG + chr3_1:90246901-90246920 None:intergenic 35.0%
! TCGATTTTGCTTTCTCAACT+TGG + chr3_1:90246925-90246944 None:intergenic 35.0%
ATAAACTTGGTTGGAGTTTG+GGG + chr3_1:90246948-90246967 None:intergenic 35.0%
GATAAACTTGGTTGGAGTTT+GGG + chr3_1:90246949-90246968 None:intergenic 35.0%
AGATAAACTTGGTTGGAGTT+TGG + chr3_1:90246950-90246969 None:intergenic 35.0%
TCCAACCAAGTTTATCTTGA+CGG - chr3_1:90246953-90246972 Msa0386520:CDS 35.0%
! TGGATTTTTCTTTCTCAGCA+TGG + chr3_1:90246994-90247013 None:intergenic 35.0%
AACTTGATTGTAGTTAGGGT+TGG + chr3_1:90247014-90247033 None:intergenic 35.0%
GAAAGACACCAAAGATCAAA+AGG - chr3_1:90247051-90247070 Msa0386520:CDS 35.0%
! TATCTTTTAACCAGCCATCA+AGG + chr3_1:90247108-90247127 None:intergenic 35.0%
! ATGGCTGGTTAAAAGATAGT+CGG - chr3_1:90247110-90247129 Msa0386520:CDS 35.0%
ATAAACTCGATTGGAGTTGT+GGG + chr3_1:90247155-90247174 None:intergenic 35.0%
TCCAATCGAGTTTATCTTGA+TGG - chr3_1:90247160-90247179 Msa0386520:CDS 35.0%
TCCATCAAGATAAACTCGAT+TGG + chr3_1:90247164-90247183 None:intergenic 35.0%
ATCGAGTTTATCTTGATGGA+TGG - chr3_1:90247164-90247183 Msa0386520:CDS 35.0%
GTAAACTTGATTGGAGTTAG+GGG + chr3_1:90246810-90246829 None:intergenic 35.0%
GGTAAACTTGATTGGAGTTA+GGG + chr3_1:90246811-90246830 None:intergenic 35.0%
AGGTAAACTTGATTGGAGTT+AGG + chr3_1:90246812-90246831 None:intergenic 35.0%
TCCAATCAAGTTTACCTTGA+TGG - chr3_1:90246815-90246834 Msa0386520:CDS 35.0%
AGGTAAACTTGATTGGAGTT+AGG + chr3_1:90246812-90246831 None:intergenic 35.0%
TCCAATCAAGTTTACCTTGA+TGG - chr3_1:90246815-90246834 Msa0386520:CDS 35.0%
TCCATCAAGGTAAACTTGAT+TGG + chr3_1:90246888-90246907 None:intergenic 35.0%
ATCAAGTTTACCTTGATGGA+TGG - chr3_1:90246888-90246907 Msa0386520:CDS 35.0%
TATCTTTCAACCATCCATCA+AGG + chr3_1:90246901-90246920 None:intergenic 35.0%
ATAAACTTGGTTGGAGTTTG+GGG + chr3_1:90246948-90246967 None:intergenic 35.0%
GATAAACTTGGTTGGAGTTT+GGG + chr3_1:90246949-90246968 None:intergenic 35.0%
AGATAAACTTGGTTGGAGTT+TGG + chr3_1:90246950-90246969 None:intergenic 35.0%
TCCAACCAAGTTTATCTTGA+TGG - chr3_1:90246953-90246972 Msa0386520:CDS 35.0%
TCCATCAAGATAAACTTGGT+TGG + chr3_1:90247440-90247459 None:intergenic 35.0%
ACCAAGTTTATCTTGATGGA+TGG - chr3_1:90247440-90247459 Msa0386520:CDS 35.0%
ACCATCCATCAAGATAAACT+TGG + chr3_1:90247168-90247187 None:intergenic 35.0%
TCGATATTGCTTTCTCAACT+TGG + chr3_1:90247546-90247565 None:intergenic 35.0%
! TGGATTTTACTTGCTCAACT+TGG + chr3_1:90247615-90247634 None:intergenic 35.0%
GTAAACTTGATTGGAGTTAG+GGG + chr3_1:90246810-90246829 None:intergenic 35.0%
GGTAAACTTGATTGGAGTTA+GGG + chr3_1:90246811-90246830 None:intergenic 35.0%
AGGTAAACTTGATTGGAGTT+AGG + chr3_1:90246812-90246831 None:intergenic 35.0%
TCCAATCAAGTTTACCTTGA+TGG - chr3_1:90246815-90246834 Msa0386520:CDS 35.0%
TCCATCAAGGTAAACTTGAT+TGG + chr3_1:90246888-90246907 None:intergenic 35.0%
ATCAAGTTTACCTTGATGGA+TGG - chr3_1:90246888-90246907 Msa0386520:CDS 35.0%
TATCTTTCAACCATCCATCA+AGG + chr3_1:90246901-90246920 None:intergenic 35.0%
GAAAGATACCAAGGATCAAA+TGG - chr3_1:90247672-90247691 Msa0386520:CDS 35.0%
! TGGTTTTTCCATTTGATCCT+TGG + chr3_1:90247683-90247702 None:intergenic 35.0%
! GTCTTGTCCAATTTTCTTCA+TGG + chr3_1:90247767-90247786 None:intergenic 35.0%
GAAGAAAATTGGACAAGACA+TGG - chr3_1:90247768-90247787 Msa0386520:CDS 35.0%
AAGACATGGCAGAATCAAAA+GGG - chr3_1:90247782-90247801 Msa0386520:CDS 35.0%
!! GTATGGTCAACTTTTGAAGA+TGG + chr3_1:90247811-90247830 None:intergenic 35.0%
TTCAAAAGTTGACCATACAG+AGG - chr3_1:90247813-90247832 Msa0386520:CDS 35.0%
TGAGAGAGAATAGTTGAAGA+AGG + chr3_1:90247981-90248000 None:intergenic 35.0%
TGTGAATTTGAACCCACAAA+AGG - chr3_1:90248048-90248067 Msa0386520:CDS 35.0%
GTGAATTTGAACCCACAAAA+GGG - chr3_1:90248049-90248068 Msa0386520:CDS 35.0%
TGAATTTGAACCCACAAAAG+GGG - chr3_1:90248050-90248069 Msa0386520:CDS 35.0%
TAATGAAGTAGGACAAGCTT+TGG + chr3_1:90248079-90248098 None:intergenic 35.0%
! TTTGCAGAACTACACCATTT+TGG - chr3_1:90248191-90248210 Msa0386520:CDS 35.0%
!! CACCATTTTGGAAATCTCAA+AGG - chr3_1:90248203-90248222 Msa0386520:CDS 35.0%
AGGATATCTATGCTCCTAAA+TGG - chr3_1:90248223-90248242 Msa0386520:CDS 35.0%
GGATATCTATGCTCCTAAAT+GGG - chr3_1:90248224-90248243 Msa0386520:CDS 35.0%
! TAGTAAAGAGCATAAGGGTA+AGG + chr3_1:90248267-90248286 None:intergenic 35.0%
AGGTCTTCAAAGTTCTTCTA+AGG - chr3_1:90248313-90248332 Msa0386520:CDS 35.0%
GGTCTTCAAAGTTCTTCTAA+GGG - chr3_1:90248314-90248333 Msa0386520:CDS 35.0%
GTCTTCAAAGTTCTTCTAAG+GGG - chr3_1:90248315-90248334 Msa0386520:CDS 35.0%
ATCCAAGTTATCTTGATGGA+TGG - chr3_1:90246612-90246631 Msa0386520:CDS 35.0%
AACCATCCATCAAGATAACT+TGG + chr3_1:90246617-90246636 None:intergenic 35.0%
ACCAATCAAGTTTACCTAGA+TGG - chr3_1:90246677-90246696 Msa0386520:CDS 35.0%
TCCATCTAGGTAAACTTGAT+TGG + chr3_1:90246681-90246700 None:intergenic 35.0%
ATCAAGTTTACCTAGATGGA+TGG - chr3_1:90246681-90246700 Msa0386520:CDS 35.0%
TATCTTTCAACCATCCATCT+AGG + chr3_1:90246694-90246713 None:intergenic 35.0%
TCCAATCAAGTTTACCTAGA+TGG - chr3_1:90246746-90246765 Msa0386520:CDS 35.0%
TCCATCTAGGTAAACTTGAT+TGG + chr3_1:90246681-90246700 None:intergenic 35.0%
ATCAAGTTTACCTAGATGGA+TGG - chr3_1:90246681-90246700 Msa0386520:CDS 35.0%
TTACCTAGATGGATGGTTAA+AGG - chr3_1:90246757-90246776 Msa0386520:CDS 35.0%
TATCCTTTAACCATCCATCT+AGG + chr3_1:90246763-90246782 None:intergenic 35.0%
GTAAACTTGATTGGAGTTAG+GGG + chr3_1:90246810-90246829 None:intergenic 35.0%
GGTAAACTTGATTGGAGTTA+GGG + chr3_1:90246811-90246830 None:intergenic 35.0%
AGGTAAACTTGATTGGAGTT+AGG + chr3_1:90246812-90246831 None:intergenic 35.0%
TCCAATCAAGTTTACCTTGA+CGG - chr3_1:90246815-90246834 Msa0386520:CDS 35.0%
ATCAAGTTTACCTTGATGGA+TGG - chr3_1:90246888-90246907 Msa0386520:CDS 35.0%
TATCTTTCAACCATCCATCA+AGG + chr3_1:90246901-90246920 None:intergenic 35.0%
! TCGATTTTGCTTTCTCAACT+TGG + chr3_1:90246925-90246944 None:intergenic 35.0%
ATAAACTTGGTTGGAGTTTG+GGG + chr3_1:90246948-90246967 None:intergenic 35.0%
GATAAACTTGGTTGGAGTTT+GGG + chr3_1:90246949-90246968 None:intergenic 35.0%
AGATAAACTTGGTTGGAGTT+TGG + chr3_1:90246950-90246969 None:intergenic 35.0%
TCCAACCAAGTTTATCTTGA+CGG - chr3_1:90246953-90246972 Msa0386520:CDS 35.0%
! TGGATTTTTCTTTCTCAGCA+TGG + chr3_1:90246994-90247013 None:intergenic 35.0%
AACTTGATTGTAGTTAGGGT+TGG + chr3_1:90247014-90247033 None:intergenic 35.0%
GAAAGACACCAAAGATCAAA+AGG - chr3_1:90247051-90247070 Msa0386520:CDS 35.0%
! TATCTTTTAACCAGCCATCA+AGG + chr3_1:90247108-90247127 None:intergenic 35.0%
! ATGGCTGGTTAAAAGATAGT+CGG - chr3_1:90247110-90247129 Msa0386520:CDS 35.0%
ATAAACTCGATTGGAGTTGT+GGG + chr3_1:90247155-90247174 None:intergenic 35.0%
TCCAATCGAGTTTATCTTGA+TGG - chr3_1:90247160-90247179 Msa0386520:CDS 35.0%
TCCATCAAGATAAACTCGAT+TGG + chr3_1:90247164-90247183 None:intergenic 35.0%
ATCGAGTTTATCTTGATGGA+TGG - chr3_1:90247164-90247183 Msa0386520:CDS 35.0%
GTAAACTTGATTGGAGTTAG+GGG + chr3_1:90246810-90246829 None:intergenic 35.0%
GGTAAACTTGATTGGAGTTA+GGG + chr3_1:90246811-90246830 None:intergenic 35.0%
AGGTAAACTTGATTGGAGTT+AGG + chr3_1:90246812-90246831 None:intergenic 35.0%
TCCAATCAAGTTTACCTTGA+TGG - chr3_1:90246815-90246834 Msa0386520:CDS 35.0%
AGGTAAACTTGATTGGAGTT+AGG + chr3_1:90246812-90246831 None:intergenic 35.0%
TCCAATCAAGTTTACCTTGA+TGG - chr3_1:90246815-90246834 Msa0386520:CDS 35.0%
TCCATCAAGGTAAACTTGAT+TGG + chr3_1:90246888-90246907 None:intergenic 35.0%
ATCAAGTTTACCTTGATGGA+TGG - chr3_1:90246888-90246907 Msa0386520:CDS 35.0%
TATCTTTCAACCATCCATCA+AGG + chr3_1:90246901-90246920 None:intergenic 35.0%
ATAAACTTGGTTGGAGTTTG+GGG + chr3_1:90246948-90246967 None:intergenic 35.0%
GATAAACTTGGTTGGAGTTT+GGG + chr3_1:90246949-90246968 None:intergenic 35.0%
AGATAAACTTGGTTGGAGTT+TGG + chr3_1:90246950-90246969 None:intergenic 35.0%
TCCAACCAAGTTTATCTTGA+TGG - chr3_1:90246953-90246972 Msa0386520:CDS 35.0%
TCCATCAAGATAAACTTGGT+TGG + chr3_1:90247440-90247459 None:intergenic 35.0%
ACCAAGTTTATCTTGATGGA+TGG - chr3_1:90247440-90247459 Msa0386520:CDS 35.0%
ACCATCCATCAAGATAAACT+TGG + chr3_1:90247168-90247187 None:intergenic 35.0%
TCGATATTGCTTTCTCAACT+TGG + chr3_1:90247546-90247565 None:intergenic 35.0%
! TGGATTTTACTTGCTCAACT+TGG + chr3_1:90247615-90247634 None:intergenic 35.0%
GTAAACTTGATTGGAGTTAG+GGG + chr3_1:90246810-90246829 None:intergenic 35.0%
GGTAAACTTGATTGGAGTTA+GGG + chr3_1:90246811-90246830 None:intergenic 35.0%
AGGTAAACTTGATTGGAGTT+AGG + chr3_1:90246812-90246831 None:intergenic 35.0%
TCCAATCAAGTTTACCTTGA+TGG - chr3_1:90246815-90246834 Msa0386520:CDS 35.0%
TCCATCAAGGTAAACTTGAT+TGG + chr3_1:90246888-90246907 None:intergenic 35.0%
ATCAAGTTTACCTTGATGGA+TGG - chr3_1:90246888-90246907 Msa0386520:CDS 35.0%
TATCTTTCAACCATCCATCA+AGG + chr3_1:90246901-90246920 None:intergenic 35.0%
GAAAGATACCAAGGATCAAA+TGG - chr3_1:90247672-90247691 Msa0386520:CDS 35.0%
! TGGTTTTTCCATTTGATCCT+TGG + chr3_1:90247683-90247702 None:intergenic 35.0%
! GTCTTGTCCAATTTTCTTCA+TGG + chr3_1:90247767-90247786 None:intergenic 35.0%
GAAGAAAATTGGACAAGACA+TGG - chr3_1:90247768-90247787 Msa0386520:CDS 35.0%
AAGACATGGCAGAATCAAAA+GGG - chr3_1:90247782-90247801 Msa0386520:CDS 35.0%
!! GTATGGTCAACTTTTGAAGA+TGG + chr3_1:90247811-90247830 None:intergenic 35.0%
TTCAAAAGTTGACCATACAG+AGG - chr3_1:90247813-90247832 Msa0386520:CDS 35.0%
TGAGAGAGAATAGTTGAAGA+AGG + chr3_1:90247981-90248000 None:intergenic 35.0%
TGTGAATTTGAACCCACAAA+AGG - chr3_1:90248048-90248067 Msa0386520:CDS 35.0%
GTGAATTTGAACCCACAAAA+GGG - chr3_1:90248049-90248068 Msa0386520:CDS 35.0%
TGAATTTGAACCCACAAAAG+GGG - chr3_1:90248050-90248069 Msa0386520:CDS 35.0%
TAATGAAGTAGGACAAGCTT+TGG + chr3_1:90248079-90248098 None:intergenic 35.0%
! TTTGCAGAACTACACCATTT+TGG - chr3_1:90248191-90248210 Msa0386520:CDS 35.0%
!! CACCATTTTGGAAATCTCAA+AGG - chr3_1:90248203-90248222 Msa0386520:CDS 35.0%
AGGATATCTATGCTCCTAAA+TGG - chr3_1:90248223-90248242 Msa0386520:CDS 35.0%
GGATATCTATGCTCCTAAAT+GGG - chr3_1:90248224-90248243 Msa0386520:CDS 35.0%
! TAGTAAAGAGCATAAGGGTA+AGG + chr3_1:90248267-90248286 None:intergenic 35.0%
AGGTCTTCAAAGTTCTTCTA+AGG - chr3_1:90248313-90248332 Msa0386520:CDS 35.0%
GGTCTTCAAAGTTCTTCTAA+GGG - chr3_1:90248314-90248333 Msa0386520:CDS 35.0%
GTCTTCAAAGTTCTTCTAAG+GGG - chr3_1:90248315-90248334 Msa0386520:CDS 35.0%
!! TGTTTTTAAGCCAGCCATCA+AGG + chr3_1:90246562-90246581 None:intergenic 40.0%
!! GGTAAACTTGATTGGTGTTG+TGG + chr3_1:90246673-90246692 None:intergenic 40.0%
GTAAACTTGATTGGAGTCGT+GGG + chr3_1:90246741-90246760 None:intergenic 40.0%
TCCGTCAAGGTAAACTTGAT+TGG + chr3_1:90246819-90246838 None:intergenic 40.0%
ATCAAGTTTACCTTGACGGA+TGG - chr3_1:90246819-90246838 Msa0386520:CDS 40.0%
! TATCTTTTAGCCATCCGTCA+AGG + chr3_1:90246832-90246851 None:intergenic 40.0%
CCAACCAAGTTTATCTTGAC+GGG - chr3_1:90246954-90246973 Msa0386520:CDS 40.0%
! ATCAAGTTTACCTTGATGGC+TGG - chr3_1:90247026-90247045 Msa0386520:CDS 40.0%
AACTATCCACAACCTCAATC+AGG - chr3_1:90247078-90247097 Msa0386520:CDS 40.0%
! TGGCTGGTTAAAAGATAGTC+GGG - chr3_1:90247111-90247130 Msa0386520:CDS 40.0%
GATAAACTCGATTGGAGTTG+TGG + chr3_1:90247156-90247175 None:intergenic 40.0%
GCCATCAAGGTAAACTTGAT+TGG + chr3_1:90247026-90247045 None:intergenic 40.0%
! ATCAAGTTTACCTTGATGGC+TGG - chr3_1:90247026-90247045 Msa0386520:CDS 40.0%
! AAAGATAGCCAAGTTGAGCA+AGG - chr3_1:90247328-90247347 Msa0386520:CDS 40.0%
! TGGATTTTCCTTGCTCAACT+TGG + chr3_1:90247339-90247358 None:intergenic 40.0%
AACTTGATTGGAGTTAGGAG+TGG + chr3_1:90247359-90247378 None:intergenic 40.0%
! GAAAGATAGCCAAGTTGAGA+AGG - chr3_1:90246913-90246932 Msa0386520:CDS 40.0%
TTGATCTTGCCTTCTCAACT+TGG + chr3_1:90247408-90247427 None:intergenic 40.0%
! CTTGATGGATGGTTGAAAGA+TGG - chr3_1:90246623-90246642 Msa0386520:CDS 40.0%
TCGATCTTGCTTTCTCAACT+TGG + chr3_1:90247477-90247496 None:intergenic 40.0%
! CTTGATGGATGGTTGAAAGA+TGG - chr3_1:90246623-90246642 Msa0386520:CDS 40.0%
TGGATGGTTGAAAGATACCA+AGG - chr3_1:90246697-90246716 Msa0386520:CDS 40.0%
ACCAATACACAACCTCAATC+AGG - chr3_1:90247699-90247718 Msa0386520:CDS 40.0%
AGTCTTTCAACCAACCATCA+AGG + chr3_1:90247729-90247748 None:intergenic 40.0%
GCGAACTCCATGAAGAAAAT+TGG - chr3_1:90247757-90247776 Msa0386520:CDS 40.0%
CAAGACATGGCAGAATCAAA+AGG - chr3_1:90247781-90247800 Msa0386520:CDS 40.0%
CTAACTTGAATGCCTCTGTA+TGG + chr3_1:90247828-90247847 None:intergenic 40.0%
GAGAATAGTTGAAGAAGGCT+TGG + chr3_1:90247976-90247995 None:intergenic 40.0%
TCTTTCATGTCTTCACCTTG+GGG + chr3_1:90248015-90248034 None:intergenic 40.0%
GTCTTTCATGTCTTCACCTT+GGG + chr3_1:90248016-90248035 None:intergenic 40.0%
TGTCTTTCATGTCTTCACCT+TGG + chr3_1:90248017-90248036 None:intergenic 40.0%
AGCATGGACTCTAATGAAGT+AGG + chr3_1:90248090-90248109 None:intergenic 40.0%
! GGCAGTAGTAAAGAGCATAA+GGG + chr3_1:90248272-90248291 None:intergenic 40.0%
! TGGCAGTAGTAAAGAGCATA+AGG + chr3_1:90248273-90248292 None:intergenic 40.0%
! GTTCTTCTAAGGGGTCAATA+TGG - chr3_1:90248324-90248343 Msa0386520:CDS 40.0%
GGGTCAATATGGAGACATAA+TGG - chr3_1:90248335-90248354 Msa0386520:CDS 40.0%
!! TGGAGACATAATGGATGCTT+TGG - chr3_1:90248344-90248363 Msa0386520:CDS 40.0%
!! GGAGACATAATGGATGCTTT+GGG - chr3_1:90248345-90248364 Msa0386520:CDS 40.0%
AACTACTTGGAATGAAGCCT+GGG - chr3_1:90248418-90248437 Msa0386520:CDS 40.0%
!! TGTTTTTAAGCCAGCCATCA+AGG + chr3_1:90246562-90246581 None:intergenic 40.0%
!! GGTAAACTTGATTGGTGTTG+TGG + chr3_1:90246673-90246692 None:intergenic 40.0%
GTAAACTTGATTGGAGTCGT+GGG + chr3_1:90246741-90246760 None:intergenic 40.0%
TCCGTCAAGGTAAACTTGAT+TGG + chr3_1:90246819-90246838 None:intergenic 40.0%
ATCAAGTTTACCTTGACGGA+TGG - chr3_1:90246819-90246838 Msa0386520:CDS 40.0%
! TATCTTTTAGCCATCCGTCA+AGG + chr3_1:90246832-90246851 None:intergenic 40.0%
CCAACCAAGTTTATCTTGAC+GGG - chr3_1:90246954-90246973 Msa0386520:CDS 40.0%
! ATCAAGTTTACCTTGATGGC+TGG - chr3_1:90247026-90247045 Msa0386520:CDS 40.0%
AACTATCCACAACCTCAATC+AGG - chr3_1:90247078-90247097 Msa0386520:CDS 40.0%
! TGGCTGGTTAAAAGATAGTC+GGG - chr3_1:90247111-90247130 Msa0386520:CDS 40.0%
GATAAACTCGATTGGAGTTG+TGG + chr3_1:90247156-90247175 None:intergenic 40.0%
GCCATCAAGGTAAACTTGAT+TGG + chr3_1:90247026-90247045 None:intergenic 40.0%
! ATCAAGTTTACCTTGATGGC+TGG - chr3_1:90247026-90247045 Msa0386520:CDS 40.0%
! AAAGATAGCCAAGTTGAGCA+AGG - chr3_1:90247328-90247347 Msa0386520:CDS 40.0%
! TGGATTTTCCTTGCTCAACT+TGG + chr3_1:90247339-90247358 None:intergenic 40.0%
AACTTGATTGGAGTTAGGAG+TGG + chr3_1:90247359-90247378 None:intergenic 40.0%
! GAAAGATAGCCAAGTTGAGA+AGG - chr3_1:90246913-90246932 Msa0386520:CDS 40.0%
TTGATCTTGCCTTCTCAACT+TGG + chr3_1:90247408-90247427 None:intergenic 40.0%
! CTTGATGGATGGTTGAAAGA+TGG - chr3_1:90246623-90246642 Msa0386520:CDS 40.0%
TCGATCTTGCTTTCTCAACT+TGG + chr3_1:90247477-90247496 None:intergenic 40.0%
! CTTGATGGATGGTTGAAAGA+TGG - chr3_1:90246623-90246642 Msa0386520:CDS 40.0%
TGGATGGTTGAAAGATACCA+AGG - chr3_1:90246697-90246716 Msa0386520:CDS 40.0%
ACCAATACACAACCTCAATC+AGG - chr3_1:90247699-90247718 Msa0386520:CDS 40.0%
AGTCTTTCAACCAACCATCA+AGG + chr3_1:90247729-90247748 None:intergenic 40.0%
GCGAACTCCATGAAGAAAAT+TGG - chr3_1:90247757-90247776 Msa0386520:CDS 40.0%
CAAGACATGGCAGAATCAAA+AGG - chr3_1:90247781-90247800 Msa0386520:CDS 40.0%
CTAACTTGAATGCCTCTGTA+TGG + chr3_1:90247828-90247847 None:intergenic 40.0%
GAGAATAGTTGAAGAAGGCT+TGG + chr3_1:90247976-90247995 None:intergenic 40.0%
TCTTTCATGTCTTCACCTTG+GGG + chr3_1:90248015-90248034 None:intergenic 40.0%
GTCTTTCATGTCTTCACCTT+GGG + chr3_1:90248016-90248035 None:intergenic 40.0%
TGTCTTTCATGTCTTCACCT+TGG + chr3_1:90248017-90248036 None:intergenic 40.0%
AGCATGGACTCTAATGAAGT+AGG + chr3_1:90248090-90248109 None:intergenic 40.0%
! GGCAGTAGTAAAGAGCATAA+GGG + chr3_1:90248272-90248291 None:intergenic 40.0%
! TGGCAGTAGTAAAGAGCATA+AGG + chr3_1:90248273-90248292 None:intergenic 40.0%
! GTTCTTCTAAGGGGTCAATA+TGG - chr3_1:90248324-90248343 Msa0386520:CDS 40.0%
GGGTCAATATGGAGACATAA+TGG - chr3_1:90248335-90248354 Msa0386520:CDS 40.0%
!! TGGAGACATAATGGATGCTT+TGG - chr3_1:90248344-90248363 Msa0386520:CDS 40.0%
!! GGAGACATAATGGATGCTTT+GGG - chr3_1:90248345-90248364 Msa0386520:CDS 40.0%
AACTACTTGGAATGAAGCCT+GGG - chr3_1:90248418-90248437 Msa0386520:CDS 40.0%
GTTGATCAGCCTTACCTTGA+TGG - chr3_1:90246545-90246564 Msa0386520:CDS 45.0%
TTAAGCCAGCCATCAAGGTA+AGG + chr3_1:90246557-90246576 None:intergenic 45.0%
GGTAAACTTGATTGGAGTCG+TGG + chr3_1:90246742-90246761 None:intergenic 45.0%
AACTTGATTGGAGTTAGGGG+TGG + chr3_1:90246807-90246826 None:intergenic 45.0%
CCCGTCAAGATAAACTTGGT+TGG + chr3_1:90246957-90246976 None:intergenic 45.0%
ACCAAGTTTATCTTGACGGG+TGG - chr3_1:90246957-90246976 Msa0386520:CDS 45.0%
ACCACCCGTCAAGATAAACT+TGG + chr3_1:90246961-90246980 None:intergenic 45.0%
TGTCTTTCAACCAGCCATCA+AGG + chr3_1:90247039-90247058 None:intergenic 45.0%
CATCAAGGTAAGCCTGATTG+AGG + chr3_1:90247093-90247112 None:intergenic 45.0%
CTCAATCAGGCTTACCTTGA+TGG - chr3_1:90247091-90247110 Msa0386520:CDS 45.0%
AACTTGATTGGAGTTAGGGG+TGG + chr3_1:90246807-90246826 None:intergenic 45.0%
AACTTGATTGGAGTTAGGGG+TGG + chr3_1:90246807-90246826 None:intergenic 45.0%
GCCTGATTGAGGTTGTGTAT+TGG + chr3_1:90247703-90247722 None:intergenic 45.0%
CATCAAGGTAAGCCTGATTG+AGG + chr3_1:90247093-90247112 None:intergenic 45.0%
CTCAATCAGGCTTACCTTGA+TGG - chr3_1:90247091-90247110 Msa0386520:CDS 45.0%
! ATCAGGCTTACCTTGATGGT+TGG - chr3_1:90247716-90247735 Msa0386520:CDS 45.0%
CTCACAAAAGATTCTCCCCA+AGG - chr3_1:90247997-90248016 Msa0386520:CDS 45.0%
ACTAGCTATCCCACAACATC+AGG - chr3_1:90248162-90248181 Msa0386520:CDS 45.0%
AAACGTGCACCTGATGTTGT+GGG + chr3_1:90248174-90248193 None:intergenic 45.0%
TACTGCCACTACCTAGACAT+AGG - chr3_1:90248285-90248304 Msa0386520:CDS 45.0%
ACTGCCACTACCTAGACATA+GGG - chr3_1:90248286-90248305 Msa0386520:CDS 45.0%
TACTCCCTATGTCTAGGTAG+TGG + chr3_1:90248293-90248312 None:intergenic 45.0%
CTACCTAGACATAGGGAGTA+AGG - chr3_1:90248293-90248312 Msa0386520:CDS 45.0%
AGACCTTACTCCCTATGTCT+AGG + chr3_1:90248299-90248318 None:intergenic 45.0%
GATTCATGTCAGACGTGTCT+AGG + chr3_1:90248380-90248399 None:intergenic 45.0%
CAACTACTTGGAATGAAGCC+TGG - chr3_1:90248417-90248436 Msa0386520:CDS 45.0%
ACTACTTGGAATGAAGCCTG+GGG - chr3_1:90248419-90248438 Msa0386520:CDS 45.0%
ACAGGGAAGAAATGGCACAT+AGG + chr3_1:90248450-90248469 None:intergenic 45.0%
CGTGCTTTACAGGGAAGAAA+TGG + chr3_1:90248458-90248477 None:intergenic 45.0%
TCCCTGTAAAGCACGTTCTA+TGG - chr3_1:90248463-90248482 Msa0386520:CDS 45.0%
CCCATAGAACGTGCTTTACA+GGG + chr3_1:90248467-90248486 None:intergenic 45.0%
CCCTGTAAAGCACGTTCTAT+GGG - chr3_1:90248464-90248483 Msa0386520:CDS 45.0%
GTTGATCAGCCTTACCTTGA+TGG - chr3_1:90246545-90246564 Msa0386520:CDS 45.0%
TTAAGCCAGCCATCAAGGTA+AGG + chr3_1:90246557-90246576 None:intergenic 45.0%
GGTAAACTTGATTGGAGTCG+TGG + chr3_1:90246742-90246761 None:intergenic 45.0%
AACTTGATTGGAGTTAGGGG+TGG + chr3_1:90246807-90246826 None:intergenic 45.0%
CCCGTCAAGATAAACTTGGT+TGG + chr3_1:90246957-90246976 None:intergenic 45.0%
ACCAAGTTTATCTTGACGGG+TGG - chr3_1:90246957-90246976 Msa0386520:CDS 45.0%
ACCACCCGTCAAGATAAACT+TGG + chr3_1:90246961-90246980 None:intergenic 45.0%
TGTCTTTCAACCAGCCATCA+AGG + chr3_1:90247039-90247058 None:intergenic 45.0%
CATCAAGGTAAGCCTGATTG+AGG + chr3_1:90247093-90247112 None:intergenic 45.0%
CTCAATCAGGCTTACCTTGA+TGG - chr3_1:90247091-90247110 Msa0386520:CDS 45.0%
AACTTGATTGGAGTTAGGGG+TGG + chr3_1:90246807-90246826 None:intergenic 45.0%
AACTTGATTGGAGTTAGGGG+TGG + chr3_1:90246807-90246826 None:intergenic 45.0%
GCCTGATTGAGGTTGTGTAT+TGG + chr3_1:90247703-90247722 None:intergenic 45.0%
CATCAAGGTAAGCCTGATTG+AGG + chr3_1:90247093-90247112 None:intergenic 45.0%
CTCAATCAGGCTTACCTTGA+TGG - chr3_1:90247091-90247110 Msa0386520:CDS 45.0%
! ATCAGGCTTACCTTGATGGT+TGG - chr3_1:90247716-90247735 Msa0386520:CDS 45.0%
CTCACAAAAGATTCTCCCCA+AGG - chr3_1:90247997-90248016 Msa0386520:CDS 45.0%
ACTAGCTATCCCACAACATC+AGG - chr3_1:90248162-90248181 Msa0386520:CDS 45.0%
AAACGTGCACCTGATGTTGT+GGG + chr3_1:90248174-90248193 None:intergenic 45.0%
TACTGCCACTACCTAGACAT+AGG - chr3_1:90248285-90248304 Msa0386520:CDS 45.0%
ACTGCCACTACCTAGACATA+GGG - chr3_1:90248286-90248305 Msa0386520:CDS 45.0%
TACTCCCTATGTCTAGGTAG+TGG + chr3_1:90248293-90248312 None:intergenic 45.0%
CTACCTAGACATAGGGAGTA+AGG - chr3_1:90248293-90248312 Msa0386520:CDS 45.0%
AGACCTTACTCCCTATGTCT+AGG + chr3_1:90248299-90248318 None:intergenic 45.0%
GATTCATGTCAGACGTGTCT+AGG + chr3_1:90248380-90248399 None:intergenic 45.0%
CAACTACTTGGAATGAAGCC+TGG - chr3_1:90248417-90248436 Msa0386520:CDS 45.0%
ACTACTTGGAATGAAGCCTG+GGG - chr3_1:90248419-90248438 Msa0386520:CDS 45.0%
ACAGGGAAGAAATGGCACAT+AGG + chr3_1:90248450-90248469 None:intergenic 45.0%
CGTGCTTTACAGGGAAGAAA+TGG + chr3_1:90248458-90248477 None:intergenic 45.0%
TCCCTGTAAAGCACGTTCTA+TGG - chr3_1:90248463-90248482 Msa0386520:CDS 45.0%
CCCATAGAACGTGCTTTACA+GGG + chr3_1:90248467-90248486 None:intergenic 45.0%
CCCTGTAAAGCACGTTCTAT+GGG - chr3_1:90248464-90248483 Msa0386520:CDS 45.0%
! ATCAGCCTTACCTTGATGGC+TGG - chr3_1:90246549-90246568 Msa0386520:CDS 50.0%
GGTAAGCCTGATTGAGGTTG+TGG + chr3_1:90247087-90247106 None:intergenic 50.0%
! ATCAGGCTTACCTTGATGGC+TGG - chr3_1:90247095-90247114 Msa0386520:CDS 50.0%
ACTCGATTGGAGTTGTGGGT+GGG + chr3_1:90247151-90247170 None:intergenic 50.0%
AACTCGATTGGAGTTGTGGG+TGG + chr3_1:90247152-90247171 None:intergenic 50.0%
CATCTTTCAGCCAGCCATCA+AGG + chr3_1:90247246-90247265 None:intergenic 50.0%
! GGTAGTTGCGACTTGGAGAA+AGG + chr3_1:90247955-90247974 None:intergenic 50.0%
! AAGGCTTGGTAGTTGCGACT+TGG + chr3_1:90247962-90247981 None:intergenic 50.0%
! GCTTTGGTCTCCCCTTTTGT+GGG + chr3_1:90248063-90248082 None:intergenic 50.0%
!! AGCTTTGGTCTCCCCTTTTG+TGG + chr3_1:90248064-90248083 None:intergenic 50.0%
CAAACGTGCACCTGATGTTG+TGG + chr3_1:90248175-90248194 None:intergenic 50.0%
GGGTGACAAGCTACCCATTT+AGG + chr3_1:90248240-90248259 None:intergenic 50.0%
! AATGGGTAGCTTGTCACCCT+AGG - chr3_1:90248241-90248260 Msa0386520:CDS 50.0%
GAGCATAAGGGTAAGGCCTA+GGG + chr3_1:90248260-90248279 None:intergenic 50.0%
AGAGCATAAGGGTAAGGCCT+AGG + chr3_1:90248261-90248280 None:intergenic 50.0%
TCATGTCAGACGTGTCTAGG+TGG + chr3_1:90248377-90248396 None:intergenic 50.0%
GCCCATAGAACGTGCTTTAC+AGG + chr3_1:90248468-90248487 None:intergenic 50.0%
! ATCAGCCTTACCTTGATGGC+TGG - chr3_1:90246549-90246568 Msa0386520:CDS 50.0%
GGTAAGCCTGATTGAGGTTG+TGG + chr3_1:90247087-90247106 None:intergenic 50.0%
! ATCAGGCTTACCTTGATGGC+TGG - chr3_1:90247095-90247114 Msa0386520:CDS 50.0%
ACTCGATTGGAGTTGTGGGT+GGG + chr3_1:90247151-90247170 None:intergenic 50.0%
AACTCGATTGGAGTTGTGGG+TGG + chr3_1:90247152-90247171 None:intergenic 50.0%
CATCTTTCAGCCAGCCATCA+AGG + chr3_1:90247246-90247265 None:intergenic 50.0%
! GGTAGTTGCGACTTGGAGAA+AGG + chr3_1:90247955-90247974 None:intergenic 50.0%
! AAGGCTTGGTAGTTGCGACT+TGG + chr3_1:90247962-90247981 None:intergenic 50.0%
! GCTTTGGTCTCCCCTTTTGT+GGG + chr3_1:90248063-90248082 None:intergenic 50.0%
!! AGCTTTGGTCTCCCCTTTTG+TGG + chr3_1:90248064-90248083 None:intergenic 50.0%
CAAACGTGCACCTGATGTTG+TGG + chr3_1:90248175-90248194 None:intergenic 50.0%
GGGTGACAAGCTACCCATTT+AGG + chr3_1:90248240-90248259 None:intergenic 50.0%
! AATGGGTAGCTTGTCACCCT+AGG - chr3_1:90248241-90248260 Msa0386520:CDS 50.0%
GAGCATAAGGGTAAGGCCTA+GGG + chr3_1:90248260-90248279 None:intergenic 50.0%
AGAGCATAAGGGTAAGGCCT+AGG + chr3_1:90248261-90248280 None:intergenic 50.0%
TCATGTCAGACGTGTCTAGG+TGG + chr3_1:90248377-90248396 None:intergenic 50.0%
GCCCATAGAACGTGCTTTAC+AGG + chr3_1:90248468-90248487 None:intergenic 50.0%
TGGCACATAGGAGCTTCCCC+AGG + chr3_1:90248438-90248457 None:intergenic 60.0%
TGGCACATAGGAGCTTCCCC+AGG + chr3_1:90248438-90248457 None:intergenic 60.0%
ATGGGCACCACTCCCACCAG+AGG - chr3_1:90248482-90248501 Msa0386520:CDS 65.0%
! TTGGTGGCCTCTGGTGGGAG+TGG + chr3_1:90248492-90248511 None:intergenic 65.0%
ATGGGCACCACTCCCACCAG+AGG - chr3_1:90248482-90248501 Msa0386520:CDS 65.0%
! TTGGTGGCCTCTGGTGGGAG+TGG + chr3_1:90248492-90248511 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 90246509 90248515 90246509 ID=Msa0386520;Name=Msa0386520
chr3_1 mRNA 90246509 90248515 90246509 ID=Msa0386520-mRNA-1;Parent=Msa0386520;Name=Msa0386520-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|-1|0|1|-1|1|1|0|668
chr3_1 exon 90246509 90248515 90246509 ID=Msa0386520-mRNA-1:exon:24920;Parent=Msa0386520-mRNA-1
chr3_1 CDS 90246509 90248515 90246509 ID=Msa0386520-mRNA-1:cds;Parent=Msa0386520-mRNA-1
Gene Sequence

>Msa0386520

ATGAAGCTTCAGCACGAGAATGTAGAAGAAAAACAAGTTGATCAGCCTTACCTTGATGGCTGGCTTAAAAACAGTCCACTGAAGAACAAAAAACTAAACTCTAATCCAAGTTATCTTGATGGATGGTTGAAAGATGCTCCCGAAGAAAACAAAAAAGCTATCCACAACACCAATCAAGTTTACCTAGATGGATGGTTGAAAGATACCAAGAATCAAAAGGAAAAGACTACCCACGACTCCAATCAAGTTTACCTAGATGGATGGTTAAAGGATACCCAAGTTCAAAAAACAAAATCCACCCCTAACTCCAATCAAGTTTACCTTGACGGATGGCTAAAAGATACCCAAGTTGAGAAAGCAAAATTCATCCCTAACTCTAATCAAGTTTACCTTGATGGATGGTTGAAAGATAGCCAAGTTGAGAAAGCAAAATCGACCCCAAACTCCAACCAAGTTTATCTTGACGGGTGGTTGAAAGATAGCCATGCTGAGAAAGAAAAATCCAACCCTAACTACAATCAAGTTTACCTTGATGGCTGGTTGAAAGACACCAAAGATCAAAAGGAAAAAACTATCCACAACCTCAATCAGGCTTACCTTGATGGCTGGTTAAAAGATAGTCGGGTTGAGAGAGCAAAACCCACCCACAACTCCAATCGAGTTTATCTTGATGGATGGTTGAAAGATAGCCATGTTGAGAAAGAAAAATCCACCCCTAACTCCAATCAAGTTTACCTTGATGGCTGGCTGAAAGATGCCCAACTTGAGAAAGCAAAATCAACCCCAAACTTCAATCAAGTTTATCTTGATGGATGGTTGAAAGATAGCCAAGTTGAGCAAGGAAAATCCACTCCTAACTCCAATCAAGTTTACCTTGATGGATGGTTGAAAGATAGCCAAGTTGAGAAGGCAAGATCAACCCCAAACTCCAACCAAGTTTATCTTGATGGATGGTTGAAAGATGGCCAAGTTGAGAAAGCAAGATCGACCCCAAACTCCAATCAAGTTTATCTTGATGGATGGTTGAAAGATAGCCAAGTTGAGAAAGCAATATCGACCCCAAACTCTAATCAAGTTTATCTTGATGGATGGTTGAAAGATGGCCAAGTTGAGCAAGTAAAATCCACCCCTAACTCCAATCAAGTTTACCTTGATGGATGGTTGAAAGATACCAAGGATCAAATGGAAAAACCAATACACAACCTCAATCAGGCTTACCTTGATGGTTGGTTGAAAGACTCGCATGCAGCGAACTCCATGAAGAAAATTGGACAAGACATGGCAGAATCAAAAGGGAAACCATCTTCAAAAGTTGACCATACAGAGGCATTCAAGTTAGCTTTTTTCACTATCGATGATCTTTATGTAGGAAACGTAATGACACTGCAATTTCCTATCAGAGAATATGCTAACTTCTTGCCAAAAAAAGTAGCTGACTACATTCCTTTCTCCAAGTCGCAACTACCAAGCCTTCTTCAACTATTCTCTCTCACAAAAGATTCTCCCCAAGGTGAAGACATGAAAGACATAATTGATCAATGTGAATTTGAACCCACAAAAGGGGAGACCAAAGCTTGTCCTACTTCATTAGAGTCCATGCTTGAATTTGTTCATAGTGTTCTTGGTACTGAGACCAAATATAACATTCACACAACTAGCTATCCCACAACATCAGGTGCACGTTTGCAGAACTACACCATTTTGGAAATCTCAAAGGATATCTATGCTCCTAAATGGGTAGCTTGTCACCCTAGGCCTTACCCTTATGCTCTTTACTACTGCCACTACCTAGACATAGGGAGTAAGGTCTTCAAAGTTCTTCTAAGGGGTCAATATGGAGACATAATGGATGCTTTGGGCATTTGCCACCTAGACACGTCTGACATGAATCCTAATCATTTTATATTTCAACTACTTGGAATGAAGCCTGGGGAAGCTCCTATGTGCCATTTCTTCCCTGTAAAGCACGTTCTATGGGCACCACTCCCACCAGAGGCCACCAACTGA
Protein sequence

>Msa0386520

MKLQHENVEEKQVDQPYLDGWLKNSPLKNKKLNSNPSYLDGWLKDAPEENKKAIHNTNQVYLDGWLKDTKNQKEKTTHDSNQVYLDGWLKDTQVQKTKSTPNSNQVYLDGWLKDTQVEKAKFIPNSNQVYLDGWLKDSQVEKAKSTPNSNQVYLDGWLKDSHAEKEKSNPNYNQVYLDGWLKDTKDQKEKTIHNLNQAYLDGWLKDSRVERAKPTHNSNRVYLDGWLKDSHVEKEKSTPNSNQVYLDGWLKDAQLEKAKSTPNFNQVYLDGWLKDSQVEQGKSTPNSNQVYLDGWLKDSQVEKARSTPNSNQVYLDGWLKDGQVEKARSTPNSNQVYLDGWLKDSQVEKAISTPNSNQVYLDGWLKDGQVEQVKSTPNSNQVYLDGWLKDTKDQMEKPIHNLNQAYLDGWLKDSHAANSMKKIGQDMAESKGKPSSKVDHTEAFKLAFFTIDDLYVGNVMTLQFPIREYANFLPKKVADYIPFSKSQLPSLLQLFSLTKDSPQGEDMKDIIDQCEFEPTKGETKACPTSLESMLEFVHSVLGTETKYNIHTTSYPTTSGARLQNYTILEISKDIYAPKWVACHPRPYPYALYYCHYLDIGSKVFKVLLRGQYGDIMDALGICHLDTSDMNPNHFIFQLLGMKPGEAPMCHFFPVKHVLWAPLPPEATN*