AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0748430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748430 MtrunA17_Chr7g0225681 75.720 729 86 7 26 663 1 729 0.0 959
Msa0748430 MtrunA17_Chr8g0373581 73.423 444 29 6 290 663 2 426 0.0 610
Msa0748430 MtrunA17_Chr8g0373591 81.413 269 29 5 26 273 1 269 9.80e-99 303
Msa0748430 MtrunA17_Chr8g0373591 62.963 135 40 5 181 309 45 175 5.71e-20 90.5
Msa0748430 MtrunA17_Chr1g0188151 96.739 92 3 0 572 663 1 92 4.17e-58 190
Msa0748430 MtrunA17_Chr1g0188141 84.444 90 13 1 26 114 1 90 3.15e-30 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748430 AT5G41020.1 55.124 283 126 1 378 660 302 583 2.25e-112 350

Find 134 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATAAATTCCAGCTCTTC+AGG 0.282279 5_2:+1664738 None:intergenic
AACAAATGATCCACCATATT+GGG 0.286872 5_2:-1664254 Msa0748430:CDS
GAAGATCAAAGCAGCTGTTT+TGG 0.293853 5_2:-1664943 Msa0748430:CDS
ACATTGCTTTCGGACATATA+TGG 0.300898 5_2:+1666139 None:intergenic
CATTGAGCAGGTGGAAGTTC+TGG 0.301208 5_2:-1664211 Msa0748430:CDS
CCTATGGAAAACCACGTTAA+AGG 0.302141 5_2:+1664111 None:intergenic
GTCACTATACTCCTTAAGTT+TGG 0.317240 5_2:+1665355 None:intergenic
TTGATCTTCTCATCTTCTTC+GGG 0.322099 5_2:+1664957 None:intergenic
TTTGATCTTCTCATCTTCTT+CGG 0.324153 5_2:+1664956 None:intergenic
GAACAAATGATCCACCATAT+TGG 0.329038 5_2:-1664255 Msa0748430:CDS
GATAAACGCTTTATATGCTT+TGG 0.342448 5_2:-1664355 Msa0748430:CDS
TATATAGATTCTCATGGTTT+GGG 0.357329 5_2:-1664918 Msa0748430:CDS
GTATATAGATTCTCATGGTT+TGG 0.365976 5_2:-1664919 Msa0748430:CDS
TTATGTGTGCCTTCTTCACT+TGG 0.367399 5_2:+1665659 None:intergenic
TCATCATCTTCACATTCATT+TGG 0.373205 5_2:+1665425 None:intergenic
GGGAGATGAAGGTCTTGATA+TGG 0.374391 5_2:-1664898 Msa0748430:CDS
GGAGGCAATTGGTCACAAAT+TGG 0.375244 5_2:-1664478 Msa0748430:CDS
TCTCTATCTTTCAACAGGTT+AGG 0.380269 5_2:+1664174 None:intergenic
ACTCCTAACTCTGCACATAA+TGG 0.384709 5_2:-1665068 Msa0748430:CDS
GTTCCATTATGTGCAGAGTT+AGG 0.391649 5_2:+1665065 None:intergenic
GAGGGCAGTAGCCGACGCTT+TGG 0.393084 5_2:-1664685 Msa0748430:CDS
TGGCTGCATGCTCCCCAATA+TGG 0.395764 5_2:+1664241 None:intergenic
AAAATAAACCCATTCAATAT+AGG 0.398922 5_2:+1666258 None:intergenic
CAGATCAGCTACATTGCTTT+CGG 0.400572 5_2:+1666129 None:intergenic
CTCTATCTTTCAACAGGTTA+GGG 0.404823 5_2:+1664175 None:intergenic
CATTGGTTGCTAGTGGTGAT+TGG 0.407410 5_2:-1664401 Msa0748430:CDS
AGGCCTCTCTATCTTTCAAC+AGG 0.417278 5_2:+1664169 None:intergenic
AGAAGCAATGAAGGTGATAA+TGG 0.417384 5_2:-1665902 Msa0748430:CDS
TTCCAACAGCCTCTAACCTC+GGG 0.421209 5_2:+1664855 None:intergenic
GTTTCATTATGTGCACAGTT+AGG 0.421260 5_2:+1665089 None:intergenic
TAGCCCTCTCGAGCAGATCT+AGG 0.424550 5_2:+1664553 None:intergenic
AAAGGGAGGGGAGGTGTAAG+TGG 0.424706 5_2:-1664764 Msa0748430:CDS
GTTGCGAGATAATATTTGTT+GGG 0.434220 5_2:-1664499 Msa0748430:CDS
AAATTACACCCCGAGGTTAG+AGG 0.442409 5_2:-1664864 Msa0748430:CDS
AGGGCAGTAGCCGACGCTTT+GGG 0.446431 5_2:-1664684 Msa0748430:CDS
GCTGCATGGAGGAGGTAGAC+TGG 0.446516 5_2:-1664326 Msa0748430:CDS
CTAAACGCAAACAAGTAACT+TGG 0.447239 5_2:-1665040 Msa0748430:CDS
TGCTCATGCTTTGTTAGAAA+GGG 0.448940 5_2:-1664781 Msa0748430:CDS
GTGCTCATGCTTTGTTAGAA+AGG 0.460254 5_2:-1664782 Msa0748430:CDS
AATATTTGTTGGGAGGCAAT+TGG 0.463198 5_2:-1664489 Msa0748430:CDS
TTTCCAACAGCCTCTAACCT+CGG 0.465967 5_2:+1664854 None:intergenic
ACACTGTAATGAGGCCTCTC+AGG 0.470045 5_2:+1664813 None:intergenic
TGCTTTGGATGCTTGCTGCA+TGG 0.479442 5_2:-1664340 Msa0748430:CDS
TCTCATGGTTTGGGAGATGA+AGG 0.479659 5_2:-1664909 Msa0748430:CDS
TAGAAGCAATGGAGGTGAAG+AGG 0.481860 5_2:-1665528 Msa0748430:CDS
ACGGCTTATTGCGTGGGAAA+AGG 0.484774 5_2:-1664986 Msa0748430:CDS
AAGAAGCAGAAATTAATTGA+AGG 0.487991 5_2:-1665578 Msa0748430:CDS
TGTTGCGAGATAATATTTGT+TGG 0.489321 5_2:-1664500 Msa0748430:CDS
GTCAGTGAAGTTAATGATCA+AGG 0.490585 5_2:-1665161 Msa0748430:CDS
GGATGCTTGCTGCATGGAGG+AGG 0.492182 5_2:-1664334 Msa0748430:CDS
AAGAAGAAACCAAGTGAAGA+AGG 0.493411 5_2:-1665668 Msa0748430:CDS
GAGTGAGGAAAGCAAACATA+AGG 0.496559 5_2:-1665843 Msa0748430:CDS
AAGTGAAGAAAGTAAACATA+AGG 0.498172 5_2:-1665465 Msa0748430:CDS
TGAAGGTGATAATGGCGAGC+AGG 0.499793 5_2:-1665894 Msa0748430:CDS
ATAGGTCTGGTGATGTATGC+AGG 0.510035 5_2:-1664287 Msa0748430:CDS
TGTAATGACTTTAGAAGCAA+TGG 0.511180 5_2:-1665539 Msa0748430:intron
AACAACTTTAGAAGCAATGA+AGG 0.512264 5_2:-1665911 Msa0748430:CDS
TAAGTGGACACCTGAAGAGC+TGG 0.512398 5_2:-1664748 Msa0748430:CDS
AATTGAGGAAGCCAAACTTA+AGG 0.514474 5_2:-1665366 Msa0748430:CDS
AGTGACATTATAAGCAATGA+AGG 0.517478 5_2:-1665338 Msa0748430:intron
ATGTGATGTCCTATATTGAA+TGG 0.517575 5_2:-1666267 Msa0748430:CDS
TTTGGGTAAAAGTCGAGATC+AGG 0.519802 5_2:-1664667 Msa0748430:CDS
GAAGAAGAAGAAACTAATTG+AGG 0.520193 5_2:-1665381 Msa0748430:CDS
AGCCAAGTCATTCATTGAGC+AGG 0.521908 5_2:-1664223 Msa0748430:CDS
AATCTACTTGAGCATAGGTC+TGG 0.523977 5_2:-1664300 Msa0748430:CDS
CTGCATGGAGGAGGTAGACT+GGG 0.526890 5_2:-1664325 Msa0748430:CDS
AAAAGCAATAAAAGTGAAGA+TGG 0.528970 5_2:-1666097 Msa0748430:CDS
CGAGCAATTAACATCAGCAT+TGG 0.533412 5_2:-1664418 Msa0748430:CDS
AAGAAGCGGAAGCTAGTTGA+AGG 0.534153 5_2:-1665953 Msa0748430:CDS
TTGGAGTATATAGATTCTCA+TGG 0.535104 5_2:-1664924 Msa0748430:CDS
AAGTGAAGAAGGCACACATA+AGG 0.535379 5_2:-1665657 Msa0748430:CDS
ACCCCGAGGTTAGAGGCTGT+TGG 0.535419 5_2:-1664857 Msa0748430:CDS
AAAAGTGAAGATGGCGAGCA+AGG 0.538269 5_2:-1666088 Msa0748430:CDS
TGTGATGTCCTATATTGAAT+GGG 0.542771 5_2:-1666266 Msa0748430:CDS
CATATATGGATCACCTCCAT+TGG 0.545409 5_2:+1666153 None:intergenic
CATATAAAGCGTTTATCAAG+CGG 0.546556 5_2:+1664361 None:intergenic
AATCACAGGTTTGTTGTCAA+AGG 0.550299 5_2:+1664149 None:intergenic
ACGAGCAACATGGATCTAGT+TGG 0.551620 5_2:-1664707 Msa0748430:CDS
AACTTGGGCTGATGAGGTGG+AGG 0.553676 5_2:-1665024 Msa0748430:CDS
GTTTATCAAGCGGAAGTCAT+CGG 0.557461 5_2:+1664371 None:intergenic
ACAAGTAACTTGGGCTGATG+AGG 0.559174 5_2:-1665030 Msa0748430:CDS
TGTTGTGACGGCTTATTGCG+TGG 0.561335 5_2:-1664993 Msa0748430:CDS
CGGTTATACACACTGTAATG+AGG 0.572231 5_2:+1664804 None:intergenic
AGAAGCAATGGAGGTGAAGA+GGG 0.572295 5_2:-1665527 Msa0748430:CDS
CATGCTTTGTTAGAAAGGGA+GGG 0.573971 5_2:-1664777 Msa0748430:CDS
AGTAACTTGGGCTGATGAGG+TGG 0.573985 5_2:-1665027 Msa0748430:CDS
TCATGCTTTGTTAGAAAGGG+AGG 0.576855 5_2:-1664778 Msa0748430:CDS
TAGAAACCTCAACAAATCAC+AGG 0.579568 5_2:+1664135 None:intergenic
GAAGGTGATAATGGCGAGCA+GGG 0.580967 5_2:-1665893 Msa0748430:CDS
ATGCTTTGTTAGAAAGGGAG+GGG 0.581640 5_2:-1664776 Msa0748430:CDS
CACCTGCTCAATGAATGACT+TGG 0.584077 5_2:+1664221 None:intergenic
AACAAACCTGTGATTTGTTG+AGG 0.586181 5_2:-1664141 Msa0748430:exon
AGCAACATGGATCTAGTTGG+AGG 0.586815 5_2:-1664704 Msa0748430:CDS
GCGAGATAATATTTGTTGGG+AGG 0.587211 5_2:-1664496 Msa0748430:CDS
GAGGAGAAGTTATGTTGTGA+CGG 0.589001 5_2:-1665005 Msa0748430:CDS
ACATCAGCATTGGTTGCTAG+TGG 0.590714 5_2:-1664408 Msa0748430:CDS
AGAAGCAATGATGATGAAGA+TGG 0.598793 5_2:-1665716 Msa0748430:CDS
GACGACGAGGGTGAAACCAA+TGG 0.599409 5_2:-1666169 Msa0748430:CDS
CTGCATGCTCCCCAATATGG+TGG 0.600862 5_2:+1664244 None:intergenic
TAAACGCAAACAAGTAACTT+GGG 0.603412 5_2:-1665039 Msa0748430:CDS
TGAAGGAAACACACTTGAGG+AGG 0.607482 5_2:-1665936 Msa0748430:CDS
AAACCTAGATCTGCTCGAGA+GGG 0.608007 5_2:-1664556 Msa0748430:CDS
TAAACCTAGATCTGCTCGAG+AGG 0.609475 5_2:-1664557 Msa0748430:CDS
TTGATCATTAACTTCACTGA+CGG 0.613157 5_2:+1665163 None:intergenic
AATTGAAGGAAGCACACTGA+AGG 0.616212 5_2:-1665753 Msa0748430:CDS
GGGACAATCTACTTGAGCAT+AGG 0.618965 5_2:-1664305 Msa0748430:CDS
TAACCTGTTGAAAGATAGAG+AGG 0.620502 5_2:-1664172 Msa0748430:CDS
ACAAATGATCCACCATATTG+GGG 0.622830 5_2:-1664253 Msa0748430:CDS
CAAGTCATTCATTGAGCAGG+TGG 0.627450 5_2:-1664220 Msa0748430:CDS
GAAAAGACCTACGAGCAACA+TGG 0.630731 5_2:-1664717 Msa0748430:CDS
TTTCTAACAAAGCATGAGCA+CGG 0.633278 5_2:+1664784 None:intergenic
GTGATGTATGCAGGAAACGA+TGG 0.636494 5_2:-1664278 Msa0748430:CDS
GTTGTGACGGCTTATTGCGT+GGG 0.642851 5_2:-1664992 Msa0748430:CDS
GCAACATGGATCTAGTTGGA+GGG 0.643237 5_2:-1664703 Msa0748430:CDS
TTTGGATGCTTGCTGCATGG+AGG 0.643384 5_2:-1664337 Msa0748430:CDS
AATGAATGTGAAGATGATGA+TGG 0.645642 5_2:-1665422 Msa0748430:CDS
ACTAGATCCATGTTGCTCGT+AGG 0.645688 5_2:+1664710 None:intergenic
TGATGTATGCAGGAAACGAT+GGG 0.648956 5_2:-1664277 Msa0748430:CDS
GAGATCAGGTAAAAGATGCG+TGG 0.653330 5_2:-1664653 Msa0748430:CDS
GAGGTTTCTAACCTTTAACG+TGG 0.658433 5_2:-1664122 Msa0748430:three_prime_UTR
AATGACTTTAGAAGCAATGG+AGG 0.658645 5_2:-1665536 Msa0748430:intron
CTTTGTTAGAAAGGGAGGGG+AGG 0.659450 5_2:-1664773 Msa0748430:CDS
GAAGGAAACACACTTGAGGA+GGG 0.660891 5_2:-1665935 Msa0748430:CDS
AAAAGGACATTGGTCCCAAG+AGG 0.666914 5_2:-1664604 Msa0748430:CDS
AAATGTCAAATTACACCCCG+AGG 0.668903 5_2:-1664871 Msa0748430:CDS
CAAAAGAACTGAAGACGACG+AGG 0.676138 5_2:-1666182 Msa0748430:CDS
AAATGTGAAGCTGACAACCA+AGG 0.682713 5_2:-1665797 Msa0748430:intron
TGTGAAGATGATGATGGCCA+AGG 0.683186 5_2:-1665416 Msa0748430:CDS
TCCAACAGCCTCTAACCTCG+GGG 0.692890 5_2:+1664856 None:intergenic
AATGATTGTGAAGATGACCA+AGG 0.698674 5_2:-1665614 Msa0748430:CDS
AGTTGAAGGAAACACACTTG+AGG 0.699110 5_2:-1665939 Msa0748430:CDS
AAAAGAACTGAAGACGACGA+GGG 0.720222 5_2:-1666181 Msa0748430:CDS
GAATGTGAAGATGATGACCA+CGG 0.736913 5_2:-1665989 Msa0748430:CDS
GACGAGGGTGAAACCAATGG+AGG 0.742823 5_2:-1666166 Msa0748430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTGGTATATTTTAAT+CGG + chr5_2:1665773-1665792 None:intergenic 15.0%
!! AAATATACCAAAACAAAAAA+AGG - chr5_2:1665777-1665796 Msa0748430:CDS 15.0%
!!! TTGTTTTGGTATATTTTAAT+CGG + chr5_2:1665773-1665792 None:intergenic 15.0%
!! AAATATACCAAAACAAAAAA+AGG - chr5_2:1665777-1665796 Msa0748430:CDS 15.0%
!! AAAATAAACCCATTCAATAT+AGG + chr5_2:1664143-1664162 None:intergenic 20.0%
!! TCACATGTTTATAATACATT+TGG + chr5_2:1664117-1664136 None:intergenic 20.0%
!! AAAATAAACCCATTCAATAT+AGG + chr5_2:1664143-1664162 None:intergenic 20.0%
!!! ATCTTCACTTTTATTGCTTT+TGG + chr5_2:1664302-1664321 None:intergenic 25.0%
! AAAAGCAATAAAAGTGAAGA+TGG - chr5_2:1664301-1664320 Msa0748430:CDS 25.0%
! ATGAAAAAGAAGCTAATTGA+AGG - chr5_2:1664631-1664650 Msa0748430:CDS 25.0%
! AAGAAGCAGAAATTAATTGA+AGG - chr5_2:1664820-1664839 Msa0748430:CDS 25.0%
! AAGTGAAGAAAGTAAACATA+AGG - chr5_2:1664933-1664952 Msa0748430:CDS 25.0%
! TATATAGATTCTCATGGTTT+GGG - chr5_2:1665480-1665499 Msa0748430:CDS 25.0%
!!! TAAATTTTGATACTCCTCTT+GGG + chr5_2:1665811-1665830 None:intergenic 25.0%
!!! ATAAATTTTGATACTCCTCT+TGG + chr5_2:1665812-1665831 None:intergenic 25.0%
!!! CCATGTTGTGATTTTTTATA+AGG + chr5_2:1665876-1665895 None:intergenic 25.0%
! CCTTATAAAAAATCACAACA+TGG - chr5_2:1665873-1665892 Msa0748430:CDS 25.0%
!!! ATCTTCACTTTTATTGCTTT+TGG + chr5_2:1664302-1664321 None:intergenic 25.0%
! AAAAGCAATAAAAGTGAAGA+TGG - chr5_2:1664301-1664320 Msa0748430:CDS 25.0%
! ATGAAAAAGAAGCTAATTGA+AGG - chr5_2:1664631-1664650 Msa0748430:CDS 25.0%
! AAGAAGCAGAAATTAATTGA+AGG - chr5_2:1664820-1664839 Msa0748430:CDS 25.0%
! AAGTGAAGAAAGTAAACATA+AGG - chr5_2:1664933-1664952 Msa0748430:CDS 25.0%
! TATATAGATTCTCATGGTTT+GGG - chr5_2:1665480-1665499 Msa0748430:CDS 25.0%
!!! TAAATTTTGATACTCCTCTT+GGG + chr5_2:1665811-1665830 None:intergenic 25.0%
!!! ATAAATTTTGATACTCCTCT+TGG + chr5_2:1665812-1665831 None:intergenic 25.0%
!!! CCATGTTGTGATTTTTTATA+AGG + chr5_2:1665876-1665895 None:intergenic 25.0%
! CCTTATAAAAAATCACAACA+TGG - chr5_2:1665873-1665892 Msa0748430:CDS 25.0%
ATGTGATGTCCTATATTGAA+TGG - chr5_2:1664131-1664150 Msa0748430:exon 30.0%
TGTGATGTCCTATATTGAAT+GGG - chr5_2:1664132-1664151 Msa0748430:exon 30.0%
!! TTATTTTGCAGTCATTGAAG+AGG - chr5_2:1664156-1664175 Msa0748430:CDS 30.0%
! TATTTTGCAGTCATTGAAGA+GGG - chr5_2:1664157-1664176 Msa0748430:CDS 30.0%
!!! GTTCTTTTGTTTTTCTTGCT+CGG + chr5_2:1664205-1664224 None:intergenic 30.0%
!! CTTTTATTGCTTTTGGTCAA+AGG + chr5_2:1664295-1664314 None:intergenic 30.0%
GAAAGAAGATGAAAAAGAAG+CGG - chr5_2:1664431-1664450 Msa0748430:CDS 30.0%
! AACAACTTTAGAAGCAATGA+AGG - chr5_2:1664487-1664506 Msa0748430:CDS 30.0%
GGGAAAGAAGAAAAAGAAAA+AGG - chr5_2:1664525-1664544 Msa0748430:CDS 30.0%
GAAAAAGGAAAAATTGAGTG+AGG - chr5_2:1664540-1664559 Msa0748430:CDS 30.0%
!! TCTTTTTCATCTTCTTTCCT+TGG + chr5_2:1664621-1664640 None:intergenic 30.0%
!! TCTTTTTCGTCTTTTTTCCT+TGG + chr5_2:1664804-1664823 None:intergenic 30.0%
! TGTAATGACTTTAGAAGCAA+TGG - chr5_2:1664859-1664878 Msa0748430:CDS 30.0%
TCATCATCTTCACATTCATT+TGG + chr5_2:1664406-1664425 None:intergenic 30.0%
AATGAATGTGAAGATGATGA+TGG - chr5_2:1664406-1664425 Msa0748430:CDS 30.0%
! TCTTCTTCATTTTCTTTCCT+TGG + chr5_2:1665002-1665021 None:intergenic 30.0%
GAAGAAGAAGAAACTAATTG+AGG - chr5_2:1665017-1665036 Msa0748430:CDS 30.0%
AGTGACATTATAAGCAATGA+AGG - chr5_2:1665060-1665079 Msa0748430:CDS 30.0%
TTGATCATTAACTTCACTGA+CGG + chr5_2:1665238-1665257 None:intergenic 30.0%
TAAACGCAAACAAGTAACTT+GGG - chr5_2:1665359-1665378 Msa0748430:CDS 30.0%
TTTGATCTTCTCATCTTCTT+CGG + chr5_2:1665445-1665464 None:intergenic 30.0%
TTGGAGTATATAGATTCTCA+TGG - chr5_2:1665474-1665493 Msa0748430:CDS 30.0%
GTATATAGATTCTCATGGTT+TGG - chr5_2:1665479-1665498 Msa0748430:CDS 30.0%
!!! CCAATGTCCTTTTTTTGTTT+TGG + chr5_2:1665787-1665806 None:intergenic 30.0%
CCAAAACAAAAAAAGGACAT+TGG - chr5_2:1665784-1665803 Msa0748430:CDS 30.0%
TGTTGCGAGATAATATTTGT+TGG - chr5_2:1665898-1665917 Msa0748430:CDS 30.0%
GTTGCGAGATAATATTTGTT+GGG - chr5_2:1665899-1665918 Msa0748430:CDS 30.0%
! CATATAAAGCGTTTATCAAG+CGG + chr5_2:1666040-1666059 None:intergenic 30.0%
GATAAACGCTTTATATGCTT+TGG - chr5_2:1666043-1666062 Msa0748430:intron 30.0%
AACAAATGATCCACCATATT+GGG - chr5_2:1666144-1666163 Msa0748430:CDS 30.0%
ATGTGATGTCCTATATTGAA+TGG - chr5_2:1664131-1664150 Msa0748430:exon 30.0%
TGTGATGTCCTATATTGAAT+GGG - chr5_2:1664132-1664151 Msa0748430:exon 30.0%
!! TTATTTTGCAGTCATTGAAG+AGG - chr5_2:1664156-1664175 Msa0748430:CDS 30.0%
! TATTTTGCAGTCATTGAAGA+GGG - chr5_2:1664157-1664176 Msa0748430:CDS 30.0%
!!! GTTCTTTTGTTTTTCTTGCT+CGG + chr5_2:1664205-1664224 None:intergenic 30.0%
!! CTTTTATTGCTTTTGGTCAA+AGG + chr5_2:1664295-1664314 None:intergenic 30.0%
GAAAGAAGATGAAAAAGAAG+CGG - chr5_2:1664431-1664450 Msa0748430:CDS 30.0%
! AACAACTTTAGAAGCAATGA+AGG - chr5_2:1664487-1664506 Msa0748430:CDS 30.0%
GGGAAAGAAGAAAAAGAAAA+AGG - chr5_2:1664525-1664544 Msa0748430:CDS 30.0%
GAAAAAGGAAAAATTGAGTG+AGG - chr5_2:1664540-1664559 Msa0748430:CDS 30.0%
!! TCTTTTTCATCTTCTTTCCT+TGG + chr5_2:1664621-1664640 None:intergenic 30.0%
!! TCTTTTTCGTCTTTTTTCCT+TGG + chr5_2:1664804-1664823 None:intergenic 30.0%
! TGTAATGACTTTAGAAGCAA+TGG - chr5_2:1664859-1664878 Msa0748430:CDS 30.0%
TCATCATCTTCACATTCATT+TGG + chr5_2:1664406-1664425 None:intergenic 30.0%
AATGAATGTGAAGATGATGA+TGG - chr5_2:1664406-1664425 Msa0748430:CDS 30.0%
! TCTTCTTCATTTTCTTTCCT+TGG + chr5_2:1665002-1665021 None:intergenic 30.0%
GAAGAAGAAGAAACTAATTG+AGG - chr5_2:1665017-1665036 Msa0748430:CDS 30.0%
AGTGACATTATAAGCAATGA+AGG - chr5_2:1665060-1665079 Msa0748430:CDS 30.0%
TTGATCATTAACTTCACTGA+CGG + chr5_2:1665238-1665257 None:intergenic 30.0%
TAAACGCAAACAAGTAACTT+GGG - chr5_2:1665359-1665378 Msa0748430:CDS 30.0%
TTTGATCTTCTCATCTTCTT+CGG + chr5_2:1665445-1665464 None:intergenic 30.0%
TTGGAGTATATAGATTCTCA+TGG - chr5_2:1665474-1665493 Msa0748430:CDS 30.0%
GTATATAGATTCTCATGGTT+TGG - chr5_2:1665479-1665498 Msa0748430:CDS 30.0%
!!! CCAATGTCCTTTTTTTGTTT+TGG + chr5_2:1665787-1665806 None:intergenic 30.0%
CCAAAACAAAAAAAGGACAT+TGG - chr5_2:1665784-1665803 Msa0748430:CDS 30.0%
TGTTGCGAGATAATATTTGT+TGG - chr5_2:1665898-1665917 Msa0748430:CDS 30.0%
GTTGCGAGATAATATTTGTT+GGG - chr5_2:1665899-1665918 Msa0748430:CDS 30.0%
! CATATAAAGCGTTTATCAAG+CGG + chr5_2:1666040-1666059 None:intergenic 30.0%
GATAAACGCTTTATATGCTT+TGG - chr5_2:1666043-1666062 Msa0748430:intron 30.0%
AACAAATGATCCACCATATT+GGG - chr5_2:1666144-1666163 Msa0748430:CDS 30.0%
! ATTTTGCAGTCATTGAAGAG+GGG - chr5_2:1664158-1664177 Msa0748430:CDS 35.0%
ACATTGCTTTCGGACATATA+TGG + chr5_2:1664262-1664281 None:intergenic 35.0%
!! TCTTTTTCATCTTCTTTCCG+TGG + chr5_2:1664429-1664448 None:intergenic 35.0%
AGAAGCAATGAAGGTGATAA+TGG - chr5_2:1664496-1664515 Msa0748430:CDS 35.0%
! AGAAGCAATGATGATGAAGA+TGG - chr5_2:1664682-1664701 Msa0748430:CDS 35.0%
AAGAAGAAACCAAGTGAAGA+AGG - chr5_2:1664730-1664749 Msa0748430:CDS 35.0%
AATGATTGTGAAGATGACCA+AGG - chr5_2:1664784-1664803 Msa0748430:CDS 35.0%
! AATGACTTTAGAAGCAATGG+AGG - chr5_2:1664862-1664881 Msa0748430:CDS 35.0%
AATTGAGGAAGCCAAACTTA+AGG - chr5_2:1665032-1665051 Msa0748430:CDS 35.0%
GTCACTATACTCCTTAAGTT+TGG + chr5_2:1665046-1665065 None:intergenic 35.0%
GTCACTGAAGTTAATGATGA+AGG - chr5_2:1665105-1665124 Msa0748430:CDS 35.0%
GTCAGTGAAGTTAATGATCA+AGG - chr5_2:1665237-1665256 Msa0748430:intron 35.0%
GTTTCATTATGTGCACAGTT+AGG + chr5_2:1665312-1665331 None:intergenic 35.0%
CTAAACGCAAACAAGTAACT+TGG - chr5_2:1665358-1665377 Msa0748430:CDS 35.0%
TTGATCTTCTCATCTTCTTC+GGG + chr5_2:1665444-1665463 None:intergenic 35.0%
TTTCTAACAAAGCATGAGCA+CGG + chr5_2:1665617-1665636 None:intergenic 35.0%
! TGCTCATGCTTTGTTAGAAA+GGG - chr5_2:1665617-1665636 Msa0748430:CDS 35.0%
TCAATAAATTCCAGCTCTTC+AGG + chr5_2:1665663-1665682 None:intergenic 35.0%
! AATATTTGTTGGGAGGCAAT+TGG - chr5_2:1665909-1665928 Msa0748430:CDS 35.0%
GAACAAATGATCCACCATAT+TGG - chr5_2:1666143-1666162 Msa0748430:CDS 35.0%
ACAAATGATCCACCATATTG+GGG - chr5_2:1666145-1666164 Msa0748430:CDS 35.0%
CTCTATCTTTCAACAGGTTA+GGG + chr5_2:1666226-1666245 None:intergenic 35.0%
TCTCTATCTTTCAACAGGTT+AGG + chr5_2:1666227-1666246 None:intergenic 35.0%
TAACCTGTTGAAAGATAGAG+AGG - chr5_2:1666226-1666245 Msa0748430:CDS 35.0%
!! AATCACAGGTTTGTTGTCAA+AGG + chr5_2:1666252-1666271 None:intergenic 35.0%
!! AACAAACCTGTGATTTGTTG+AGG - chr5_2:1666257-1666276 Msa0748430:CDS 35.0%
TAGAAACCTCAACAAATCAC+AGG + chr5_2:1666266-1666285 None:intergenic 35.0%
! ATTTTGCAGTCATTGAAGAG+GGG - chr5_2:1664158-1664177 Msa0748430:CDS 35.0%
ACATTGCTTTCGGACATATA+TGG + chr5_2:1664262-1664281 None:intergenic 35.0%
!! TCTTTTTCATCTTCTTTCCG+TGG + chr5_2:1664429-1664448 None:intergenic 35.0%
AGAAGCAATGAAGGTGATAA+TGG - chr5_2:1664496-1664515 Msa0748430:CDS 35.0%
! AGAAGCAATGATGATGAAGA+TGG - chr5_2:1664682-1664701 Msa0748430:CDS 35.0%
AAGAAGAAACCAAGTGAAGA+AGG - chr5_2:1664730-1664749 Msa0748430:CDS 35.0%
AATGATTGTGAAGATGACCA+AGG - chr5_2:1664784-1664803 Msa0748430:CDS 35.0%
! AATGACTTTAGAAGCAATGG+AGG - chr5_2:1664862-1664881 Msa0748430:CDS 35.0%
AATTGAGGAAGCCAAACTTA+AGG - chr5_2:1665032-1665051 Msa0748430:CDS 35.0%
GTCACTATACTCCTTAAGTT+TGG + chr5_2:1665046-1665065 None:intergenic 35.0%
GTCACTGAAGTTAATGATGA+AGG - chr5_2:1665105-1665124 Msa0748430:CDS 35.0%
GTCAGTGAAGTTAATGATCA+AGG - chr5_2:1665237-1665256 Msa0748430:intron 35.0%
GTTTCATTATGTGCACAGTT+AGG + chr5_2:1665312-1665331 None:intergenic 35.0%
CTAAACGCAAACAAGTAACT+TGG - chr5_2:1665358-1665377 Msa0748430:CDS 35.0%
TTGATCTTCTCATCTTCTTC+GGG + chr5_2:1665444-1665463 None:intergenic 35.0%
TTTCTAACAAAGCATGAGCA+CGG + chr5_2:1665617-1665636 None:intergenic 35.0%
! TGCTCATGCTTTGTTAGAAA+GGG - chr5_2:1665617-1665636 Msa0748430:CDS 35.0%
TCAATAAATTCCAGCTCTTC+AGG + chr5_2:1665663-1665682 None:intergenic 35.0%
! AATATTTGTTGGGAGGCAAT+TGG - chr5_2:1665909-1665928 Msa0748430:CDS 35.0%
GAACAAATGATCCACCATAT+TGG - chr5_2:1666143-1666162 Msa0748430:CDS 35.0%
ACAAATGATCCACCATATTG+GGG - chr5_2:1666145-1666164 Msa0748430:CDS 35.0%
CTCTATCTTTCAACAGGTTA+GGG + chr5_2:1666226-1666245 None:intergenic 35.0%
TCTCTATCTTTCAACAGGTT+AGG + chr5_2:1666227-1666246 None:intergenic 35.0%
TAACCTGTTGAAAGATAGAG+AGG - chr5_2:1666226-1666245 Msa0748430:CDS 35.0%
!! AATCACAGGTTTGTTGTCAA+AGG + chr5_2:1666252-1666271 None:intergenic 35.0%
!! AACAAACCTGTGATTTGTTG+AGG - chr5_2:1666257-1666276 Msa0748430:CDS 35.0%
TAGAAACCTCAACAAATCAC+AGG + chr5_2:1666266-1666285 None:intergenic 35.0%
AAAAGAACTGAAGACGACGA+GGG - chr5_2:1664217-1664236 Msa0748430:CDS 40.0%
CATATATGGATCACCTCCAT+TGG + chr5_2:1664248-1664267 None:intergenic 40.0%
CAGATCAGCTACATTGCTTT+CGG + chr5_2:1664272-1664291 None:intergenic 40.0%
GAATGTGAAGATGATGACCA+CGG - chr5_2:1664409-1664428 Msa0748430:CDS 40.0%
AGTTGAAGGAAACACACTTG+AGG - chr5_2:1664459-1664478 Msa0748430:CDS 40.0%
GAGTGAGGAAAGCAAACATA+AGG - chr5_2:1664555-1664574 Msa0748430:CDS 40.0%
AAATGTGAAGCTGACAACCA+AGG - chr5_2:1664601-1664620 Msa0748430:CDS 40.0%
! AATTGAAGGAAGCACACTGA+AGG - chr5_2:1664645-1664664 Msa0748430:CDS 40.0%
TTATGTGTGCCTTCTTCACT+TGG + chr5_2:1664742-1664761 None:intergenic 40.0%
! AAGTGAAGAAGGCACACATA+AGG - chr5_2:1664741-1664760 Msa0748430:CDS 40.0%
GTTTCATTACGTGCACAGTT+AGG + chr5_2:1665180-1665199 None:intergenic 40.0%
AATGAAACTCCTGGCAATGA+AGG - chr5_2:1665192-1665211 Msa0748430:intron 40.0%
ACTCCTAACTCTGCACATAA+TGG - chr5_2:1665330-1665349 Msa0748430:intron 40.0%
GTTCCATTATGTGCAGAGTT+AGG + chr5_2:1665336-1665355 None:intergenic 40.0%
GAGGAGAAGTTATGTTGTGA+CGG - chr5_2:1665393-1665412 Msa0748430:CDS 40.0%
! GAAGATCAAAGCAGCTGTTT+TGG - chr5_2:1665455-1665474 Msa0748430:CDS 40.0%
AAATGTCAAATTACACCCCG+AGG - chr5_2:1665527-1665546 Msa0748430:CDS 40.0%
CGGTTATACACACTGTAATG+AGG + chr5_2:1665597-1665616 None:intergenic 40.0%
! GTGCTCATGCTTTGTTAGAA+AGG - chr5_2:1665616-1665635 Msa0748430:CDS 40.0%
! TCATGCTTTGTTAGAAAGGG+AGG - chr5_2:1665620-1665639 Msa0748430:CDS 40.0%
! CATGCTTTGTTAGAAAGGGA+GGG - chr5_2:1665621-1665640 Msa0748430:CDS 40.0%
! ATGCTTTGTTAGAAAGGGAG+GGG - chr5_2:1665622-1665641 Msa0748430:CDS 40.0%
TTTGGGTAAAAGTCGAGATC+AGG - chr5_2:1665731-1665750 Msa0748430:CDS 40.0%
! GCGAGATAATATTTGTTGGG+AGG - chr5_2:1665902-1665921 Msa0748430:CDS 40.0%
CGAGCAATTAACATCAGCAT+TGG - chr5_2:1665980-1665999 Msa0748430:CDS 40.0%
GTTTATCAAGCGGAAGTCAT+CGG + chr5_2:1666030-1666049 None:intergenic 40.0%
AATCTACTTGAGCATAGGTC+TGG - chr5_2:1666098-1666117 Msa0748430:CDS 40.0%
TGATGTATGCAGGAAACGAT+GGG - chr5_2:1666121-1666140 Msa0748430:CDS 40.0%
GAGGTTTCTAACCTTTAACG+TGG - chr5_2:1666276-1666295 Msa0748430:CDS 40.0%
AAAAGAACTGAAGACGACGA+GGG - chr5_2:1664217-1664236 Msa0748430:CDS 40.0%
CATATATGGATCACCTCCAT+TGG + chr5_2:1664248-1664267 None:intergenic 40.0%
CAGATCAGCTACATTGCTTT+CGG + chr5_2:1664272-1664291 None:intergenic 40.0%
GAATGTGAAGATGATGACCA+CGG - chr5_2:1664409-1664428 Msa0748430:CDS 40.0%
AGTTGAAGGAAACACACTTG+AGG - chr5_2:1664459-1664478 Msa0748430:CDS 40.0%
GAGTGAGGAAAGCAAACATA+AGG - chr5_2:1664555-1664574 Msa0748430:CDS 40.0%
AAATGTGAAGCTGACAACCA+AGG - chr5_2:1664601-1664620 Msa0748430:CDS 40.0%
! AATTGAAGGAAGCACACTGA+AGG - chr5_2:1664645-1664664 Msa0748430:CDS 40.0%
TTATGTGTGCCTTCTTCACT+TGG + chr5_2:1664742-1664761 None:intergenic 40.0%
! AAGTGAAGAAGGCACACATA+AGG - chr5_2:1664741-1664760 Msa0748430:CDS 40.0%
GTTTCATTACGTGCACAGTT+AGG + chr5_2:1665180-1665199 None:intergenic 40.0%
AATGAAACTCCTGGCAATGA+AGG - chr5_2:1665192-1665211 Msa0748430:intron 40.0%
ACTCCTAACTCTGCACATAA+TGG - chr5_2:1665330-1665349 Msa0748430:intron 40.0%
GTTCCATTATGTGCAGAGTT+AGG + chr5_2:1665336-1665355 None:intergenic 40.0%
GAGGAGAAGTTATGTTGTGA+CGG - chr5_2:1665393-1665412 Msa0748430:CDS 40.0%
! GAAGATCAAAGCAGCTGTTT+TGG - chr5_2:1665455-1665474 Msa0748430:CDS 40.0%
AAATGTCAAATTACACCCCG+AGG - chr5_2:1665527-1665546 Msa0748430:CDS 40.0%
CGGTTATACACACTGTAATG+AGG + chr5_2:1665597-1665616 None:intergenic 40.0%
! GTGCTCATGCTTTGTTAGAA+AGG - chr5_2:1665616-1665635 Msa0748430:CDS 40.0%
! TCATGCTTTGTTAGAAAGGG+AGG - chr5_2:1665620-1665639 Msa0748430:CDS 40.0%
! CATGCTTTGTTAGAAAGGGA+GGG - chr5_2:1665621-1665640 Msa0748430:CDS 40.0%
! ATGCTTTGTTAGAAAGGGAG+GGG - chr5_2:1665622-1665641 Msa0748430:CDS 40.0%
TTTGGGTAAAAGTCGAGATC+AGG - chr5_2:1665731-1665750 Msa0748430:CDS 40.0%
! GCGAGATAATATTTGTTGGG+AGG - chr5_2:1665902-1665921 Msa0748430:CDS 40.0%
CGAGCAATTAACATCAGCAT+TGG - chr5_2:1665980-1665999 Msa0748430:CDS 40.0%
GTTTATCAAGCGGAAGTCAT+CGG + chr5_2:1666030-1666049 None:intergenic 40.0%
AATCTACTTGAGCATAGGTC+TGG - chr5_2:1666098-1666117 Msa0748430:CDS 40.0%
TGATGTATGCAGGAAACGAT+GGG - chr5_2:1666121-1666140 Msa0748430:CDS 40.0%
GAGGTTTCTAACCTTTAACG+TGG - chr5_2:1666276-1666295 Msa0748430:CDS 40.0%
CAAAAGAACTGAAGACGACG+AGG - chr5_2:1664216-1664235 Msa0748430:CDS 45.0%
AAAAGTGAAGATGGCGAGCA+AGG - chr5_2:1664310-1664329 Msa0748430:CDS 45.0%
AAGAAGCGGAAGCTAGTTGA+AGG - chr5_2:1664445-1664464 Msa0748430:CDS 45.0%
TGAAGGAAACACACTTGAGG+AGG - chr5_2:1664462-1664481 Msa0748430:CDS 45.0%
GAAGGAAACACACTTGAGGA+GGG - chr5_2:1664463-1664482 Msa0748430:CDS 45.0%
TAGAAGCAATGGAGGTGAAG+AGG - chr5_2:1664870-1664889 Msa0748430:CDS 45.0%
AGAAGCAATGGAGGTGAAGA+GGG - chr5_2:1664871-1664890 Msa0748430:CDS 45.0%
!! TGTGAAGATGATGATGGCCA+AGG - chr5_2:1664982-1665001 Msa0748430:CDS 45.0%
TGTGCACGTAATGAAACTCC+TGG - chr5_2:1665183-1665202 Msa0748430:CDS 45.0%
ACAAGTAACTTGGGCTGATG+AGG - chr5_2:1665368-1665387 Msa0748430:CDS 45.0%
! TCTCATGGTTTGGGAGATGA+AGG - chr5_2:1665489-1665508 Msa0748430:CDS 45.0%
GGGAGATGAAGGTCTTGATA+TGG - chr5_2:1665500-1665519 Msa0748430:CDS 45.0%
AAATTACACCCCGAGGTTAG+AGG - chr5_2:1665534-1665553 Msa0748430:intron 45.0%
TTTCCAACAGCCTCTAACCT+CGG + chr5_2:1665547-1665566 None:intergenic 45.0%
! TCGCAAAAAGCATACCTGAG+AGG - chr5_2:1665571-1665590 Msa0748430:CDS 45.0%
GAAAAGACCTACGAGCAACA+TGG - chr5_2:1665681-1665700 Msa0748430:CDS 45.0%
ACTAGATCCATGTTGCTCGT+AGG + chr5_2:1665691-1665710 None:intergenic 45.0%
ACGAGCAACATGGATCTAGT+TGG - chr5_2:1665691-1665710 Msa0748430:CDS 45.0%
AGCAACATGGATCTAGTTGG+AGG - chr5_2:1665694-1665713 Msa0748430:CDS 45.0%
GCAACATGGATCTAGTTGGA+GGG - chr5_2:1665695-1665714 Msa0748430:CDS 45.0%
! TCGACTTTTACCCAAAGCGT+CGG + chr5_2:1665727-1665746 None:intergenic 45.0%
GAGATCAGGTAAAAGATGCG+TGG - chr5_2:1665745-1665764 Msa0748430:CDS 45.0%
AAAAGGACATTGGTCCCAAG+AGG - chr5_2:1665794-1665813 Msa0748430:intron 45.0%
TAAACCTAGATCTGCTCGAG+AGG - chr5_2:1665841-1665860 Msa0748430:CDS 45.0%
AAACCTAGATCTGCTCGAGA+GGG - chr5_2:1665842-1665861 Msa0748430:CDS 45.0%
GGAGGCAATTGGTCACAAAT+TGG - chr5_2:1665920-1665939 Msa0748430:CDS 45.0%
! GTGCATTTTGCTGCAAGAAG+TGG - chr5_2:1665955-1665974 Msa0748430:CDS 45.0%
!! ACATCAGCATTGGTTGCTAG+TGG - chr5_2:1665990-1666009 Msa0748430:CDS 45.0%
! CATTGGTTGCTAGTGGTGAT+TGG - chr5_2:1665997-1666016 Msa0748430:CDS 45.0%
GGGACAATCTACTTGAGCAT+AGG - chr5_2:1666093-1666112 Msa0748430:CDS 45.0%
! ATAGGTCTGGTGATGTATGC+AGG - chr5_2:1666111-1666130 Msa0748430:CDS 45.0%
GTGATGTATGCAGGAAACGA+TGG - chr5_2:1666120-1666139 Msa0748430:CDS 45.0%
AGCCAAGTCATTCATTGAGC+AGG - chr5_2:1666175-1666194 Msa0748430:CDS 45.0%
CACCTGCTCAATGAATGACT+TGG + chr5_2:1666180-1666199 None:intergenic 45.0%
CAAGTCATTCATTGAGCAGG+TGG - chr5_2:1666178-1666197 Msa0748430:CDS 45.0%
AGGCCTCTCTATCTTTCAAC+AGG + chr5_2:1666232-1666251 None:intergenic 45.0%
CAAAAGAACTGAAGACGACG+AGG - chr5_2:1664216-1664235 Msa0748430:CDS 45.0%
AAAAGTGAAGATGGCGAGCA+AGG - chr5_2:1664310-1664329 Msa0748430:CDS 45.0%
AAGAAGCGGAAGCTAGTTGA+AGG - chr5_2:1664445-1664464 Msa0748430:CDS 45.0%
TGAAGGAAACACACTTGAGG+AGG - chr5_2:1664462-1664481 Msa0748430:CDS 45.0%
GAAGGAAACACACTTGAGGA+GGG - chr5_2:1664463-1664482 Msa0748430:CDS 45.0%
TAGAAGCAATGGAGGTGAAG+AGG - chr5_2:1664870-1664889 Msa0748430:CDS 45.0%
AGAAGCAATGGAGGTGAAGA+GGG - chr5_2:1664871-1664890 Msa0748430:CDS 45.0%
!! TGTGAAGATGATGATGGCCA+AGG - chr5_2:1664982-1665001 Msa0748430:CDS 45.0%
TGTGCACGTAATGAAACTCC+TGG - chr5_2:1665183-1665202 Msa0748430:CDS 45.0%
ACAAGTAACTTGGGCTGATG+AGG - chr5_2:1665368-1665387 Msa0748430:CDS 45.0%
! TCTCATGGTTTGGGAGATGA+AGG - chr5_2:1665489-1665508 Msa0748430:CDS 45.0%
GGGAGATGAAGGTCTTGATA+TGG - chr5_2:1665500-1665519 Msa0748430:CDS 45.0%
AAATTACACCCCGAGGTTAG+AGG - chr5_2:1665534-1665553 Msa0748430:intron 45.0%
TTTCCAACAGCCTCTAACCT+CGG + chr5_2:1665547-1665566 None:intergenic 45.0%
! TCGCAAAAAGCATACCTGAG+AGG - chr5_2:1665571-1665590 Msa0748430:CDS 45.0%
GAAAAGACCTACGAGCAACA+TGG - chr5_2:1665681-1665700 Msa0748430:CDS 45.0%
ACTAGATCCATGTTGCTCGT+AGG + chr5_2:1665691-1665710 None:intergenic 45.0%
ACGAGCAACATGGATCTAGT+TGG - chr5_2:1665691-1665710 Msa0748430:CDS 45.0%
AGCAACATGGATCTAGTTGG+AGG - chr5_2:1665694-1665713 Msa0748430:CDS 45.0%
GCAACATGGATCTAGTTGGA+GGG - chr5_2:1665695-1665714 Msa0748430:CDS 45.0%
! TCGACTTTTACCCAAAGCGT+CGG + chr5_2:1665727-1665746 None:intergenic 45.0%
GAGATCAGGTAAAAGATGCG+TGG - chr5_2:1665745-1665764 Msa0748430:CDS 45.0%
AAAAGGACATTGGTCCCAAG+AGG - chr5_2:1665794-1665813 Msa0748430:intron 45.0%
TAAACCTAGATCTGCTCGAG+AGG - chr5_2:1665841-1665860 Msa0748430:CDS 45.0%
AAACCTAGATCTGCTCGAGA+GGG - chr5_2:1665842-1665861 Msa0748430:CDS 45.0%
GGAGGCAATTGGTCACAAAT+TGG - chr5_2:1665920-1665939 Msa0748430:CDS 45.0%
! GTGCATTTTGCTGCAAGAAG+TGG - chr5_2:1665955-1665974 Msa0748430:CDS 45.0%
!! ACATCAGCATTGGTTGCTAG+TGG - chr5_2:1665990-1666009 Msa0748430:CDS 45.0%
! CATTGGTTGCTAGTGGTGAT+TGG - chr5_2:1665997-1666016 Msa0748430:CDS 45.0%
GGGACAATCTACTTGAGCAT+AGG - chr5_2:1666093-1666112 Msa0748430:CDS 45.0%
! ATAGGTCTGGTGATGTATGC+AGG - chr5_2:1666111-1666130 Msa0748430:CDS 45.0%
GTGATGTATGCAGGAAACGA+TGG - chr5_2:1666120-1666139 Msa0748430:CDS 45.0%
AGCCAAGTCATTCATTGAGC+AGG - chr5_2:1666175-1666194 Msa0748430:CDS 45.0%
CACCTGCTCAATGAATGACT+TGG + chr5_2:1666180-1666199 None:intergenic 45.0%
CAAGTCATTCATTGAGCAGG+TGG - chr5_2:1666178-1666197 Msa0748430:CDS 45.0%
AGGCCTCTCTATCTTTCAAC+AGG + chr5_2:1666232-1666251 None:intergenic 45.0%
!! TGAAGGTGATAATGGCGAGC+AGG - chr5_2:1664504-1664523 Msa0748430:CDS 50.0%
!! GAAGGTGATAATGGCGAGCA+GGG - chr5_2:1664505-1664524 Msa0748430:CDS 50.0%
TCAGCATCACCTTCATTGCC+AGG + chr5_2:1665204-1665223 None:intergenic 50.0%
AGTAACTTGGGCTGATGAGG+TGG - chr5_2:1665371-1665390 Msa0748430:CDS 50.0%
TGTTGTGACGGCTTATTGCG+TGG - chr5_2:1665405-1665424 Msa0748430:CDS 50.0%
GTTGTGACGGCTTATTGCGT+GGG - chr5_2:1665406-1665425 Msa0748430:CDS 50.0%
ACGGCTTATTGCGTGGGAAA+AGG - chr5_2:1665412-1665431 Msa0748430:CDS 50.0%
TTCCAACAGCCTCTAACCTC+GGG + chr5_2:1665546-1665565 None:intergenic 50.0%
ACACTGTAATGAGGCCTCTC+AGG + chr5_2:1665588-1665607 None:intergenic 50.0%
CTTTGTTAGAAAGGGAGGGG+AGG - chr5_2:1665625-1665644 Msa0748430:CDS 50.0%
TAAGTGGACACCTGAAGAGC+TGG - chr5_2:1665650-1665669 Msa0748430:CDS 50.0%
! TGCTTTGGATGCTTGCTGCA+TGG - chr5_2:1666058-1666077 Msa0748430:CDS 50.0%
! TTTGGATGCTTGCTGCATGG+AGG - chr5_2:1666061-1666080 Msa0748430:CDS 50.0%
CATTGAGCAGGTGGAAGTTC+TGG - chr5_2:1666187-1666206 Msa0748430:CDS 50.0%
!! TGAAGGTGATAATGGCGAGC+AGG - chr5_2:1664504-1664523 Msa0748430:CDS 50.0%
!! GAAGGTGATAATGGCGAGCA+GGG - chr5_2:1664505-1664524 Msa0748430:CDS 50.0%
TCAGCATCACCTTCATTGCC+AGG + chr5_2:1665204-1665223 None:intergenic 50.0%
AGTAACTTGGGCTGATGAGG+TGG - chr5_2:1665371-1665390 Msa0748430:CDS 50.0%
TGTTGTGACGGCTTATTGCG+TGG - chr5_2:1665405-1665424 Msa0748430:CDS 50.0%
GTTGTGACGGCTTATTGCGT+GGG - chr5_2:1665406-1665425 Msa0748430:CDS 50.0%
ACGGCTTATTGCGTGGGAAA+AGG - chr5_2:1665412-1665431 Msa0748430:CDS 50.0%
TTCCAACAGCCTCTAACCTC+GGG + chr5_2:1665546-1665565 None:intergenic 50.0%
ACACTGTAATGAGGCCTCTC+AGG + chr5_2:1665588-1665607 None:intergenic 50.0%
CTTTGTTAGAAAGGGAGGGG+AGG - chr5_2:1665625-1665644 Msa0748430:CDS 50.0%
TAAGTGGACACCTGAAGAGC+TGG - chr5_2:1665650-1665669 Msa0748430:CDS 50.0%
! TGCTTTGGATGCTTGCTGCA+TGG - chr5_2:1666058-1666077 Msa0748430:CDS 50.0%
! TTTGGATGCTTGCTGCATGG+AGG - chr5_2:1666061-1666080 Msa0748430:CDS 50.0%
CATTGAGCAGGTGGAAGTTC+TGG - chr5_2:1666187-1666206 Msa0748430:CDS 50.0%
GACGACGAGGGTGAAACCAA+TGG - chr5_2:1664229-1664248 Msa0748430:CDS 55.0%
GACGAGGGTGAAACCAATGG+AGG - chr5_2:1664232-1664251 Msa0748430:CDS 55.0%
AACTTGGGCTGATGAGGTGG+AGG - chr5_2:1665374-1665393 Msa0748430:CDS 55.0%
TCCAACAGCCTCTAACCTCG+GGG + chr5_2:1665545-1665564 None:intergenic 55.0%
! AAAGGGAGGGGAGGTGTAAG+TGG - chr5_2:1665634-1665653 Msa0748430:CDS 55.0%
TAGCCCTCTCGAGCAGATCT+AGG + chr5_2:1665848-1665867 None:intergenic 55.0%
CTGCATGGAGGAGGTAGACT+GGG - chr5_2:1666073-1666092 Msa0748430:CDS 55.0%
CTGCATGCTCCCCAATATGG+TGG + chr5_2:1666157-1666176 None:intergenic 55.0%
TGGCTGCATGCTCCCCAATA+TGG + chr5_2:1666160-1666179 None:intergenic 55.0%
GACGACGAGGGTGAAACCAA+TGG - chr5_2:1664229-1664248 Msa0748430:CDS 55.0%
GACGAGGGTGAAACCAATGG+AGG - chr5_2:1664232-1664251 Msa0748430:CDS 55.0%
AACTTGGGCTGATGAGGTGG+AGG - chr5_2:1665374-1665393 Msa0748430:CDS 55.0%
TCCAACAGCCTCTAACCTCG+GGG + chr5_2:1665545-1665564 None:intergenic 55.0%
! AAAGGGAGGGGAGGTGTAAG+TGG - chr5_2:1665634-1665653 Msa0748430:CDS 55.0%
TAGCCCTCTCGAGCAGATCT+AGG + chr5_2:1665848-1665867 None:intergenic 55.0%
CTGCATGGAGGAGGTAGACT+GGG - chr5_2:1666073-1666092 Msa0748430:CDS 55.0%
CTGCATGCTCCCCAATATGG+TGG + chr5_2:1666157-1666176 None:intergenic 55.0%
TGGCTGCATGCTCCCCAATA+TGG + chr5_2:1666160-1666179 None:intergenic 55.0%
ACCCCGAGGTTAGAGGCTGT+TGG - chr5_2:1665541-1665560 Msa0748430:intron 60.0%
AGGGCAGTAGCCGACGCTTT+GGG - chr5_2:1665714-1665733 Msa0748430:CDS 60.0%
! GGATGCTTGCTGCATGGAGG+AGG - chr5_2:1666064-1666083 Msa0748430:CDS 60.0%
GCTGCATGGAGGAGGTAGAC+TGG - chr5_2:1666072-1666091 Msa0748430:CDS 60.0%
ACCCCGAGGTTAGAGGCTGT+TGG - chr5_2:1665541-1665560 Msa0748430:intron 60.0%
AGGGCAGTAGCCGACGCTTT+GGG - chr5_2:1665714-1665733 Msa0748430:CDS 60.0%
! GGATGCTTGCTGCATGGAGG+AGG - chr5_2:1666064-1666083 Msa0748430:CDS 60.0%
GCTGCATGGAGGAGGTAGAC+TGG - chr5_2:1666072-1666091 Msa0748430:CDS 60.0%
GAGGGCAGTAGCCGACGCTT+TGG - chr5_2:1665713-1665732 Msa0748430:CDS 65.0%
GAGGGCAGTAGCCGACGCTT+TGG - chr5_2:1665713-1665732 Msa0748430:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 1664116 1666304 1664116 ID=Msa0748430;Name=Msa0748430
chr5_2 mRNA 1664116 1666304 1664116 ID=Msa0748430-mRNA-1;Parent=Msa0748430;Name=Msa0748430-mRNA-1;_AED=0.01;_eAED=0.01;_QI=2|0.25|0.2|1|0|0|5|27|663
chr5_2 exon 1664116 1665206 1664116 ID=Msa0748430-mRNA-1:exon:481;Parent=Msa0748430-mRNA-1
chr5_2 exon 1665339 1665547 1665339 ID=Msa0748430-mRNA-1:exon:480;Parent=Msa0748430-mRNA-1
chr5_2 exon 1665563 1665809 1665563 ID=Msa0748430-mRNA-1:exon:479;Parent=Msa0748430-mRNA-1
chr5_2 exon 1665825 1666049 1665825 ID=Msa0748430-mRNA-1:exon:478;Parent=Msa0748430-mRNA-1
chr5_2 exon 1666056 1666304 1666056 ID=Msa0748430-mRNA-1:exon:477;Parent=Msa0748430-mRNA-1
chr5_2 five_prime_UTR 1666303 1666304 1666303 ID=Msa0748430-mRNA-1:five_prime_utr;Parent=Msa0748430-mRNA-1
chr5_2 CDS 1666056 1666302 1666056 ID=Msa0748430-mRNA-1:cds;Parent=Msa0748430-mRNA-1
chr5_2 CDS 1665825 1666049 1665825 ID=Msa0748430-mRNA-1:cds;Parent=Msa0748430-mRNA-1
chr5_2 CDS 1665563 1665809 1665563 ID=Msa0748430-mRNA-1:cds;Parent=Msa0748430-mRNA-1
chr5_2 CDS 1665339 1665547 1665339 ID=Msa0748430-mRNA-1:cds;Parent=Msa0748430-mRNA-1
chr5_2 CDS 1664143 1665206 1664143 ID=Msa0748430-mRNA-1:cds;Parent=Msa0748430-mRNA-1
chr5_2 three_prime_UTR 1664116 1664142 1664116 ID=Msa0748430-mRNA-1:three_prime_utr;Parent=Msa0748430-mRNA-1
Gene Sequence

>Msa0748430

ATGTATTATAAACATGTGATGTCCTATATTGAATGGGTTTATTTTGCAGTCATTGAAGAGGGGCACAGAACGAAGATGAAGACTCCGAGCAAGAAAAACAAAAGAACTGAAGACGACGAGGGTGAAACCAATGGAGGTGATCCATATATGTCCGAAAGCAATGTAGCTGATCTGCCTTTGACCAAAAGCAATAAAAGTGAAGATGGCGAGCAAGGCAAAAAGAAAAAGAAAAAGAAGAAGAAACTGAAAAGCAATCATAAGAAGTATAATGAGTTCAAAAGCAATGAATGTGAAGATGATGACCACGGAAAGAAGATGAAAAAGAAGCGGAAGCTAGTTGAAGGAAACACACTTGAGGAGGGTAACAACTTTAGAAGCAATGAAGGTGATAATGGCGAGCAGGGAAAGAAGAAAAAGAAAAAGGAAAAATTGAGTGAGGAAAGCAAACATAAGGAGTATAACGAGTTCAAAACTGACAACCAAGGAAAGAAGATGAAAAAGAAGCTAATTGAAGGAAGCACACTGAAGGAATGTAACGACTTTAGAAGCAATGATGATGAAGATGGTGAGCGAGAGAAAAAGATGAAGAAAAAGAAGAAACCAAGTGAAGAAGGCACACATAAGGAGTATAGTGAGTTCAAAAGCAATGATTGTGAAGATGACCAAGGAAAAAAGACGAAAAAGAAGCAGAAATTAATTGAAGGAAACACACTTAATGAAAGCAATGGAGGTGAAGAGGGTGATCAAGACAAGAAGATGAAGAAAAAGAAGAAGAAACTAAGTGAAGAAAGTAAACATAAGGAGTATAGCAAGTTTGAACCAAATGAATGTGAAGATGATGATGGCCAAGGAAAGAAAATGAAGAAGAAGAAGAAACTAATTGAGGAAGCCAAACTTAAGGAGTATAGTGACATTATAAGCAATGAAGGTGATGCTGATGCTTGTTTCTCCGTCAGTGAAGTTAATGATCAAGGCAAAAAGATGAAGAAAAAAAAGAAAGCAAAGACAGTAACAAGCGAGTCTCCTAACTGTGCACATAATGAAACTCCTAACTCTGCACATAATGGAACATCTAAACGCAAACAAGTAACTTGGGCTGATGAGGTGGAGGAGAAGTTATGTTGTGACGGCTTATTGCGTGGGAAAAGGTATACACCCGAAGAAGATGAGAAGATCAAAGCAGCTGTTTTGGAGTATATAGATTCTCATGGTTTGGGAGATGAAGGTCTTGATATGGTTCTAAATGTCAAATTACACCCCGAGGTTAGAGGCTGTTGGAAAGAAATCGCAAAAAGCATACCTGAGAGGCCTCATTACAGTGTGTATAACCGTGCTCATGCTTTGTTAGAAAGGGAGGGGAGGTGTAAGTGGACACCTGAAGAGCTGGAATTTATTGAAAAGACCTACGAGCAACATGGATCTAGTTGGAGGGCAGTAGCCGACGCTTTGGGTAAAAGTCGAGATCAGGTAAAAGATGCGTGGCGCCGATTAAAATATACCAAAACAAAAAAAGGACATTGGTCCCAAGAGGAGTATCAAAATTTATTTAACTTAGTAAACCTAGATCTGCTCGAGAGGGCTAAAGAGCCTTATAAAAAATCACAACATGGTATGTTGCGAGATAATATTTGTTGGGAGGCAATTGGTCACAAATTGGAGACTCGAAACAGTGCATTTTGCTGCAAGAAGTGGTACGAGCAATTAACATCAGCATTGGTTGCTAGTGGTGATTGGTGTGATACCGATGACTTCCGCTTGATAAACGCTTTATATGCTTTGGATGCTTGCTGCATGGAGGAGGTAGACTGGGACAATCTACTTGAGCATAGGTCTGGTGATGTATGCAGGAAACGATGGGAACAAATGATCCACCATATTGGGGAGCATGCAGCCAAGTCATTCATTGAGCAGGTGGAAGTTCTGGCAAAGAGATTCTGCCCTAACCTGTTGAAAGATAGAGAGGCCTTTGACAACAAACCTGTGATTTGTTGA

Protein sequence

>Msa0748430

MYYKHVMSYIEWVYFAVIEEGHRTKMKTPSKKNKRTEDDEGETNGGDPYMSESNVADLPLTKSNKSEDGEQGKKKKKKKKKLKSNHKKYNEFKSNECEDDDHGKKMKKKRKLVEGNTLEEGNNFRSNEGDNGEQGKKKKKKEKLSEESKHKEYNEFKTDNQGKKMKKKLIEGSTLKECNDFRSNDDEDGEREKKMKKKKKPSEEGTHKEYSEFKSNDCEDDQGKKTKKKQKLIEGNTLNESNGGEEGDQDKKMKKKKKKLSEESKHKEYSKFEPNECEDDDGQGKKMKKKKKLIEEAKLKEYSDIISNEGDADACFSVSEVNDQGKKMKKKKKAKTVTSESPNCAHNETPNSAHNGTSKRKQVTWADEVEEKLCCDGLLRGKRYTPEEDEKIKAAVLEYIDSHGLGDEGLDMVLNVKLHPEVRGCWKEIAKSIPERPHYSVYNRAHALLEREGRCKWTPEELEFIEKTYEQHGSSWRAVADALGKSRDQVKDAWRRLKYTKTKKGHWSQEEYQNLFNLVNLDLLERAKEPYKKSQHGMLRDNICWEAIGHKLETRNSAFCCKKWYEQLTSALVASGDWCDTDDFRLINALYALDACCMEEVDWDNLLEHRSGDVCRKRWEQMIHHIGEHAAKSFIEQVEVLAKRFCPNLLKDREAFDNKPVIC*