AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0125860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125860 MtrunA17_Chr1g0153271 95.541 471 21 0 1 471 1 471 0.0 932
Msa0125860 MtrunA17_Chr5g0402171 49.342 456 228 3 11 464 13 467 1.99e-162 467
Msa0125860 MtrunA17_Chr7g0276561 40.702 484 249 5 11 457 8 490 3.40e-121 363
Msa0125860 MtrunA17_Chr3g0123741 48.399 281 123 3 179 457 37 297 6.72e-87 268
Msa0125860 MtrunA17_Chr3g0123751 39.450 109 54 1 73 169 33 141 7.45e-17 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125860 AT5G42930.1 54.428 463 202 4 10 464 6 467 0.0 537
Msa0125860 AT1G56630.1 53.863 466 196 6 10 457 6 470 1.44e-176 504
Msa0125860 AT1G45201.1 50.216 462 222 5 3 459 4 462 7.52e-160 461
Msa0125860 AT1G45201.3 50.216 462 222 5 3 459 29 487 1.44e-159 461
Msa0125860 AT5G42930.2 53.543 381 169 3 10 383 6 385 4.78e-150 434
Msa0125860 AT5G67050.1 47.033 455 227 7 11 456 13 462 1.14e-147 430
Msa0125860 AT1G45201.2 49.482 386 187 5 3 383 4 386 1.26e-126 373
Msa0125860 AT3G14360.1 38.076 499 266 7 2 457 10 508 1.51e-122 367
Msa0125860 AT5G18640.5 27.059 170 85 6 199 358 98 238 2.29e-11 65.1
Msa0125860 AT5G18640.1 27.059 170 85 6 199 358 98 238 2.82e-11 65.5
Msa0125860 AT5G18640.3 27.059 170 85 6 199 358 98 238 2.82e-11 65.5
Msa0125860 AT5G18640.4 27.059 170 85 6 199 358 110 250 3.08e-11 65.5
Msa0125860 AT5G18640.2 27.059 170 85 6 199 358 110 250 3.08e-11 65.5

Find 119 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCCTTCTTGAAAATTAT+TGG 0.125966 1_3:+54645645 Msa0125860:CDS
CTCTTCTTCAACTTTCTTAA+AGG 0.156900 1_3:+54645723 Msa0125860:CDS
GCAATGCAGTTAGAAATAAT+TGG 0.189881 1_3:+54646054 Msa0125860:CDS
CAAACTGCGTTTAAGATCTT+TGG 0.213583 1_3:-54648459 None:intergenic
GATGCAAAATTCATATTAAC+AGG 0.242406 1_3:+54647988 Msa0125860:CDS
AGAACTATTTCTCTTTGTTC+TGG 0.244149 1_3:+54648430 Msa0125860:CDS
CAAAGATCTTAAACGCAGTT+TGG 0.279408 1_3:+54648460 Msa0125860:CDS
TGCTTCAATGATACAACTTT+TGG 0.288502 1_3:-54648884 None:intergenic
AGAAATGTTGAAGGAAAATA+AGG 0.289378 1_3:+54647966 Msa0125860:CDS
TTAGAAGGTGTTTATACATT+TGG 0.293212 1_3:+54648090 Msa0125860:CDS
CTTGTTGGATTGATAATTCC+AGG 0.293883 1_3:+54648561 Msa0125860:CDS
CATATTAACAGGGCATAGTT+TGG 0.299211 1_3:+54647999 Msa0125860:CDS
TTCCTTCTACCATTTGTTAT+AGG 0.311769 1_3:+54648498 Msa0125860:CDS
ATATGTTTACTCCAATGATA+TGG 0.321173 1_3:+54648191 Msa0125860:CDS
TAGAAGGTGTTTATACATTT+GGG 0.324429 1_3:+54648091 Msa0125860:CDS
AAAGAGAAATAGTTCTTGTT+TGG 0.329154 1_3:-54648423 None:intergenic
AGAGTTGGAGACGAGAAGTT+TGG 0.331097 1_3:+54648120 Msa0125860:CDS
CAATGCAGTTAGAAATAATT+GGG 0.335327 1_3:+54646055 Msa0125860:CDS
CTTCTTTCATCAATTTCTTT+AGG 0.343200 1_3:-54647901 None:intergenic
TTGATTGTGGTTGCATTTAG+AGG 0.348509 1_3:+54647751 Msa0125860:CDS
AAGCAAAATCAGTATGTGAT+AGG 0.356908 1_3:+54648902 Msa0125860:three_prime_UTR
ATCTCCATGTATTTGTTGTT+CGG 0.358677 1_3:-54645445 None:intergenic
ATGGCATTGTTCAGGCTTGT+TGG 0.361487 1_3:+54648546 Msa0125860:CDS
ATTGGTTCATGGCATTGTTC+AGG 0.361946 1_3:+54648538 Msa0125860:CDS
GAACTATTTCTCTTTGTTCT+GGG 0.395273 1_3:+54648431 Msa0125860:CDS
GGTGGGTTCATGAAAGCTTT+GGG 0.397170 1_3:+54647856 Msa0125860:CDS
GCAGTTTGGGAGGTGATTAG+AGG 0.398304 1_3:+54648474 Msa0125860:CDS
AAAGATCTTAAACGCAGTTT+GGG 0.404490 1_3:+54648461 Msa0125860:CDS
TTCTTGCCTCAAGTCCTTGT+GGG 0.405312 1_3:-54645560 None:intergenic
TACACACATGAATATATATA+AGG 0.405787 1_3:-54648854 None:intergenic
TCAAGTAATGGAGGGCTCAT+TGG 0.410377 1_3:+54645699 Msa0125860:CDS
GTCGTCGGCGGAGTTCTTAT+CGG 0.410892 1_3:+54645908 Msa0125860:CDS
AAGAGGGATTTGTCATCATA+AGG 0.413128 1_3:-54648225 None:intergenic
TACCTATAACAAATGGTAGA+AGG 0.413520 1_3:-54648500 None:intergenic
TTGGAGACATGTTGGAGTCT+TGG 0.414649 1_3:+54645664 Msa0125860:CDS
ATATTAACAGGGCATAGTTT+GGG 0.421807 1_3:+54648000 Msa0125860:CDS
GTAAAGAGTATAAACAGAAT+TGG 0.425012 1_3:+54648520 Msa0125860:CDS
AATGCAACCACAATCAAGTT+TGG 0.425076 1_3:-54647745 None:intergenic
TAAGGCATTTCTTAAAGCTA+TGG 0.426559 1_3:+54645419 Msa0125860:exon
GGATCACTGGCACTGGGAAA+TGG 0.427709 1_3:-54648833 None:intergenic
CTTAATTGTTTATCAAGTAA+TGG 0.429403 1_3:+54645687 Msa0125860:CDS
CCGTTGTTAGATCAGTTAGA+AGG 0.435975 1_3:+54648075 Msa0125860:CDS
AACTTCTCGTCTCCAACTCT+TGG 0.437079 1_3:-54648117 None:intergenic
TTCCATTGCACAGCGTCAAA+TGG 0.446017 1_3:-54647781 None:intergenic
TTCATGAATAAATTAATCAA+TGG 0.450241 1_3:+54648803 Msa0125860:three_prime_UTR
CCATGCATCTTACCCACGTT+TGG 0.451550 1_3:-54647835 None:intergenic
GCATAGACATTAGTCATCCT+TGG 0.456552 1_3:-54648664 None:intergenic
CAAGAAAATTTCGACAAAGA+TGG 0.458817 1_3:+54645577 Msa0125860:CDS
AAATGTGTCGATTCGGTTGA+AGG 0.459262 1_3:-54648695 None:intergenic
TGGTGGGTTCATGAAAGCTT+TGG 0.466070 1_3:+54647855 Msa0125860:CDS
GTGAAATGAGCTGGTAGTCC+TGG 0.467415 1_3:-54648579 None:intergenic
AAGGCATTTCTTAAAGCTAT+GGG 0.468246 1_3:+54645420 Msa0125860:exon
TATATAAGGATCACTGGCAC+TGG 0.469673 1_3:-54648840 None:intergenic
TACTCTTTACCTATAACAAA+TGG 0.472622 1_3:-54648507 None:intergenic
GAAAATTATTGGAGACATGT+TGG 0.474385 1_3:+54645656 Msa0125860:CDS
GTATAAACAGAATTGGTTCA+TGG 0.475060 1_3:+54648527 Msa0125860:CDS
TTGTCATCATAAGGGATCCT+AGG 0.481249 1_3:-54648216 None:intergenic
AGCAAAATCAGTATGTGATA+GGG 0.487797 1_3:+54648903 Msa0125860:three_prime_UTR
GCATAGTTTGGGTGGAGCAT+TGG 0.487894 1_3:+54648011 Msa0125860:CDS
GATCCTAGGAACCATATCAT+TGG 0.488876 1_3:-54648202 None:intergenic
CGTAGTAAGCATATTGATGC+TGG 0.489114 1_3:-54647924 None:intergenic
AAAGCAAGTGTTGTGGAACT+AGG 0.494529 1_3:+54645489 Msa0125860:CDS
GGAACAGAAATGTGTCGATT+CGG 0.494934 1_3:-54648702 None:intergenic
ACTCCAATGATATGGTTCCT+AGG 0.497236 1_3:+54648199 Msa0125860:CDS
ATAAGGATGTAAAGTACAAA+GGG 0.499364 1_3:+54645979 Msa0125860:CDS
GCAACTGAGAGAAATGTTGA+AGG 0.501125 1_3:+54647957 Msa0125860:CDS
GTAGATTTCATACCTGCCCT+TGG 0.504655 1_3:-54648290 None:intergenic
CTCCATTTGACGCTGTGCAA+TGG 0.504884 1_3:+54647779 Msa0125860:CDS
AGCTTCATTGATTGCCCACA+AGG 0.512388 1_3:+54645546 Msa0125860:CDS
GCGGAGTTCTTATCGGTGGT+TGG 0.517251 1_3:+54645915 Msa0125860:CDS
AGAGGGATTTGTCATCATAA+GGG 0.519798 1_3:-54648224 None:intergenic
CAAAGGGTTACTATCTATCA+TGG 0.525614 1_3:+54645995 Msa0125860:CDS
AATCAAGTTTGGCTCAGACT+TGG 0.525772 1_3:-54647734 None:intergenic
ACATTTGGGCAACCAAGAGT+TGG 0.528038 1_3:+54648105 Msa0125860:CDS
TGAATATATATAAGGATCAC+TGG 0.529826 1_3:-54648846 None:intergenic
AAACAGACGTTGATATCTCC+TGG 0.531593 1_3:+54647803 Msa0125860:CDS
TTATGTCAATGCTACCCGAC+TGG 0.531631 1_3:+54648608 Msa0125860:CDS
CATAAGGATGTAAAGTACAA+AGG 0.532579 1_3:+54645978 Msa0125860:CDS
CAACAGCTTGTACCAAGGGC+AGG 0.538318 1_3:+54648278 Msa0125860:CDS
GACTGAAGTGCTTAAAGAAG+AGG 0.539336 1_3:-54648242 None:intergenic
TTTCTTGCCTCAAGTCCTTG+TGG 0.545498 1_3:-54645561 None:intergenic
CACGTTTGGTAGGTCATACC+AGG 0.546792 1_3:-54647821 None:intergenic
CTAAGTTTGATGAAAACAAG+AGG 0.547488 1_3:-54645515 None:intergenic
AATTGTTTATCAAGTAATGG+AGG 0.560190 1_3:+54645690 Msa0125860:CDS
TGAAATCCAGATTCTGGAGG+AGG 0.561254 1_3:+54648398 Msa0125860:intron
TAATCTGCAGTGAAATGAGC+TGG 0.562925 1_3:-54648588 None:intergenic
ATTGTTTATCAAGTAATGGA+GGG 0.563370 1_3:+54645691 Msa0125860:CDS
CCTAGAGCTTCTAATTTCCA+AGG 0.565181 1_3:+54648647 Msa0125860:CDS
CTGGTATGACCTACCAAACG+TGG 0.574732 1_3:+54647822 Msa0125860:CDS
CCTTGGAAATTAGAAGCTCT+AGG 0.576959 1_3:-54648647 None:intergenic
TGATTGCCCACAAGGACTTG+AGG 0.576965 1_3:+54645554 Msa0125860:CDS
GCAAAATCAGTATGTGATAG+GGG 0.577381 1_3:+54648904 Msa0125860:three_prime_UTR
TATGTCAATGCTACCCGACT+GGG 0.579643 1_3:+54648609 Msa0125860:CDS
GATCTTAAACGCAGTTTGGG+AGG 0.582036 1_3:+54648464 Msa0125860:CDS
ACTGAAGTGCTTAAAGAAGA+GGG 0.583297 1_3:-54648241 None:intergenic
GCATCTTACCCACGTTTGGT+AGG 0.584299 1_3:-54647831 None:intergenic
CTAAATCAACTCTTGTGTCA+AGG 0.587660 1_3:-54645941 None:intergenic
ATGGAGATTATCTATTTCTG+AGG 0.588396 1_3:+54645460 Msa0125860:CDS
GACTATTAGAGAACGGTGGA+TGG 0.590336 1_3:+54647878 Msa0125860:CDS
GGTTCCGAACAACAAATACA+TGG 0.590798 1_3:+54645441 Msa0125860:CDS
TTTGTCTAAGAATCCCAGTC+GGG 0.593613 1_3:-54648622 None:intergenic
TTAACAGGGCATAGTTTGGG+TGG 0.601661 1_3:+54648003 Msa0125860:CDS
ATATAAGGATCACTGGCACT+GGG 0.615996 1_3:-54648839 None:intergenic
GTCGGCGGAGTTCTTATCGG+TGG 0.625309 1_3:+54645911 Msa0125860:CDS
CCAAACGTGGGTAAGATGCA+TGG 0.629496 1_3:+54647835 Msa0125860:CDS
GCTTTGGGACTATTAGAGAA+CGG 0.641017 1_3:+54647871 Msa0125860:CDS
ACGTGGGTAAGATGCATGGT+GGG 0.641063 1_3:+54647839 Msa0125860:CDS
GTCTGAGCCAAACTTGATTG+TGG 0.648999 1_3:+54647738 Msa0125860:CDS
GTTTGTCTAAGAATCCCAGT+CGG 0.657643 1_3:-54648623 None:intergenic
TATTGAAATCCAGATTCTGG+AGG 0.663481 1_3:+54648395 Msa0125860:intron
AATGCAGTTAGAAATAATTG+GGG 0.668177 1_3:+54646056 Msa0125860:CDS
AACGTGGGTAAGATGCATGG+TGG 0.670345 1_3:+54647838 Msa0125860:CDS
CCTTCTAACTGATCTAACAA+CGG 0.677853 1_3:-54648075 None:intergenic
GATAACACCGGAAAAGTCGT+CGG 0.682426 1_3:+54645893 Msa0125860:CDS
TGCAGGAGAGGTGATAACAC+CGG 0.684829 1_3:+54645881 Msa0125860:intron
TTGGGACTATTAGAGAACGG+TGG 0.689567 1_3:+54647874 Msa0125860:CDS
ATGCAAAATTCATATTAACA+GGG 0.695453 1_3:+54647989 Msa0125860:CDS
TGGTATGACCTACCAAACGT+GGG 0.704433 1_3:+54647823 Msa0125860:CDS
AACACCGGAAAAGTCGTCGG+CGG 0.722840 1_3:+54645896 Msa0125860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAAGTTTAATTTTTTTG+AGG + chr1_3:54646347-54646366 Msa0125860:intron 10.0%
!!! ATTTAATAGTTTTATGTTAT+GGG - chr1_3:54647127-54647146 None:intergenic 10.0%
!!! TATTTAATAGTTTTATGTTA+TGG - chr1_3:54647128-54647147 None:intergenic 10.0%
!! TAAGGATAAATTAAAATATA+AGG - chr1_3:54647321-54647340 None:intergenic 10.0%
!!! TATTTTAATTTATCCTTAAT+TGG + chr1_3:54647323-54647342 Msa0125860:intron 10.0%
!!! ATTTTAATTTATCCTTAATT+GGG + chr1_3:54647324-54647343 Msa0125860:intron 10.0%
!!! GTTTACATGAATTTAAATTT+TGG + chr1_3:54645855-54645874 Msa0125860:intron 15.0%
!! ATTTACTCTAAATAAAACTA+TGG - chr1_3:54646143-54646162 None:intergenic 15.0%
!!! AATTATATATTGCATTTTGA+AGG + chr1_3:54646452-54646471 Msa0125860:intron 15.0%
!! AAGGAAAAATTTGATTATAT+AGG + chr1_3:54646471-54646490 Msa0125860:intron 15.0%
!!! TTATAATTTTTTTATGTCGA+AGG + chr1_3:54646921-54646940 Msa0125860:intron 15.0%
!! ATTTCTCTAATTTAAATGAA+GGG + chr1_3:54647491-54647510 Msa0125860:intron 15.0%
!!! ATTTTATCATTTGAAAATCA+TGG - chr1_3:54647593-54647612 None:intergenic 15.0%
!!! TGATTTTCAAATGATAAAAT+TGG + chr1_3:54647593-54647612 Msa0125860:intron 15.0%
!!! GATTTTCAAATGATAAAATT+GGG + chr1_3:54647594-54647613 Msa0125860:intron 15.0%
!! AACATCATAATGTAAAAAAA+TGG - chr1_3:54648726-54648745 None:intergenic 15.0%
!! TGATCAATTATTGTAAAAAT+AGG + chr1_3:54648757-54648776 Msa0125860:three_prime_UTR 15.0%
!! TTCATGAATAAATTAATCAA+TGG + chr1_3:54648803-54648822 Msa0125860:three_prime_UTR 15.0%
!! CTTAATTGTTTATCAAGTAA+TGG + chr1_3:54645687-54645706 Msa0125860:CDS 20.0%
!!! TACATGAATTTAAATTTTGG+TGG + chr1_3:54645858-54645877 Msa0125860:intron 20.0%
!! AGACAAAAATATTCATCATA+AGG + chr1_3:54645962-54645981 Msa0125860:CDS 20.0%
!! GTATATCTTACAAATTATGA+AGG - chr1_3:54646274-54646293 None:intergenic 20.0%
!!! GGAAAAATTCTAAAATTATG+AGG - chr1_3:54646710-54646729 None:intergenic 20.0%
!!! AAAAATTTGGCATTTTTTAG+TGG + chr1_3:54646947-54646966 Msa0125860:intron 20.0%
!! TCAATATATAACACTTATTG+TGG + chr1_3:54646972-54646991 Msa0125860:intron 20.0%
!! GTGTTTATAATATTATTGAC+AGG + chr1_3:54647149-54647168 Msa0125860:intron 20.0%
!! TAAAATATAAGGTTAATGAG+AGG - chr1_3:54647310-54647329 None:intergenic 20.0%
!! CATTTCTCTAATTTAAATGA+AGG + chr1_3:54647490-54647509 Msa0125860:intron 20.0%
!! ATGCAAAATTCATATTAACA+GGG + chr1_3:54647989-54648008 Msa0125860:CDS 20.0%
!! TACACACATGAATATATATA+AGG - chr1_3:54648857-54648876 None:intergenic 20.0%
!! CTTACAATTTTCTTTTGCTA+AGG + chr1_3:54645401-54645420 Msa0125860:five_prime_UTR 25.0%
!!! TCTCCAATAATTTTCAAGAA+GGG - chr1_3:54645651-54645670 None:intergenic 25.0%
! AATTGTTTATCAAGTAATGG+AGG + chr1_3:54645690-54645709 Msa0125860:CDS 25.0%
!! ATTGTTTATCAAGTAATGGA+GGG + chr1_3:54645691-54645710 Msa0125860:CDS 25.0%
! ATAAGGATGTAAAGTACAAA+GGG + chr1_3:54645979-54645998 Msa0125860:CDS 25.0%
! CAATGCAGTTAGAAATAATT+GGG + chr1_3:54646055-54646074 Msa0125860:CDS 25.0%
! AATGCAGTTAGAAATAATTG+GGG + chr1_3:54646056-54646075 Msa0125860:CDS 25.0%
! TGATTATTTACCAATCAACT+TGG + chr1_3:54646172-54646191 Msa0125860:intron 25.0%
!!! TAAGATAAAACCAAGTTGAT+TGG - chr1_3:54646185-54646204 None:intergenic 25.0%
! TTTATCTTATTGTTTGCAGA+TGG + chr1_3:54646196-54646215 Msa0125860:intron 25.0%
! ATCTTACAAATTATGAAGGA+TGG - chr1_3:54646270-54646289 None:intergenic 25.0%
! TTTCCATCAATGTAAATGTT+AGG - chr1_3:54646621-54646640 None:intergenic 25.0%
!!! TATGATGATGGCAAATTATA+TGG - chr1_3:54646731-54646750 None:intergenic 25.0%
! TTAGAATGTGAATATGATGA+TGG - chr1_3:54646743-54646762 None:intergenic 25.0%
!!! TATTTTTCCTTTCAAGTTGA+TGG + chr1_3:54646848-54646867 Msa0125860:intron 25.0%
! ATGTCGAAGGAAAAAAAATT+TGG + chr1_3:54646934-54646953 Msa0125860:intron 25.0%
! TATAAACTAAACATGTCACA+CGG - chr1_3:54647263-54647282 None:intergenic 25.0%
! AATGTTAAAGAATGTCCTTA+GGG - chr1_3:54647474-54647493 None:intergenic 25.0%
! AAATGTTAAAGAATGTCCTT+AGG - chr1_3:54647475-54647494 None:intergenic 25.0%
! ATCATTTGAAAATCATGGAA+GGG - chr1_3:54647588-54647607 None:intergenic 25.0%
! TATCATTTGAAAATCATGGA+AGG - chr1_3:54647589-54647608 None:intergenic 25.0%
! AATGATAAAATTGGGATATC+TGG + chr1_3:54647602-54647621 Msa0125860:intron 25.0%
! CTTCTTTCATCAATTTCTTT+AGG - chr1_3:54647904-54647923 None:intergenic 25.0%
! AGAAATGTTGAAGGAAAATA+AGG + chr1_3:54647966-54647985 Msa0125860:CDS 25.0%
! GATGCAAAATTCATATTAAC+AGG + chr1_3:54647988-54648007 Msa0125860:CDS 25.0%
!!! TTAGAAGGTGTTTATACATT+TGG + chr1_3:54648090-54648109 Msa0125860:CDS 25.0%
!!! TAGAAGGTGTTTATACATTT+GGG + chr1_3:54648091-54648110 Msa0125860:CDS 25.0%
! ATATGTTTACTCCAATGATA+TGG + chr1_3:54648191-54648210 Msa0125860:CDS 25.0%
! TTTACTTTACTTGTCTAGAA+AGG + chr1_3:54648346-54648365 Msa0125860:intron 25.0%
! AAAGAGAAATAGTTCTTGTT+TGG - chr1_3:54648426-54648445 None:intergenic 25.0%
! TACTCTTTACCTATAACAAA+TGG - chr1_3:54648510-54648529 None:intergenic 25.0%
!! GTAAAGAGTATAAACAGAAT+TGG + chr1_3:54648520-54648539 Msa0125860:CDS 25.0%
! TGAATATATATAAGGATCAC+TGG - chr1_3:54648849-54648868 None:intergenic 25.0%
! TAAGGCATTTCTTAAAGCTA+TGG + chr1_3:54645419-54645438 Msa0125860:exon 30.0%
! AAGGCATTTCTTAAAGCTAT+GGG + chr1_3:54645420-54645439 Msa0125860:exon 30.0%
!! ATCTCCATGTATTTGTTGTT+CGG - chr1_3:54645448-54645467 None:intergenic 30.0%
!! ATGGAGATTATCTATTTCTG+AGG + chr1_3:54645460-54645479 Msa0125860:CDS 30.0%
CTAAGTTTGATGAAAACAAG+AGG - chr1_3:54645518-54645537 None:intergenic 30.0%
CAAGAAAATTTCGACAAAGA+TGG + chr1_3:54645577-54645596 Msa0125860:CDS 30.0%
GATCCCTTCTTGAAAATTAT+TGG + chr1_3:54645645-54645664 Msa0125860:CDS 30.0%
!! GTCTCCAATAATTTTCAAGA+AGG - chr1_3:54645652-54645671 None:intergenic 30.0%
GAAAATTATTGGAGACATGT+TGG + chr1_3:54645656-54645675 Msa0125860:CDS 30.0%
CTCTTCTTCAACTTTCTTAA+AGG + chr1_3:54645723-54645742 Msa0125860:CDS 30.0%
!!! AATTTAAATTTTGGTGGTGC+AGG + chr1_3:54645864-54645883 Msa0125860:intron 30.0%
CATAAGGATGTAAAGTACAA+AGG + chr1_3:54645978-54645997 Msa0125860:CDS 30.0%
GCAATGCAGTTAGAAATAAT+TGG + chr1_3:54646054-54646073 Msa0125860:CDS 30.0%
! TTGTTTGCAGATGGAATTTT+TGG + chr1_3:54646205-54646224 Msa0125860:intron 30.0%
! TGTTTGCAGATGGAATTTTT+GGG + chr1_3:54646206-54646225 Msa0125860:intron 30.0%
GATATACGAACGTAGAAATT+TGG + chr1_3:54646287-54646306 Msa0125860:intron 30.0%
ATGTTCTCAAAAGTCAACTT+AGG - chr1_3:54646384-54646403 None:intergenic 30.0%
GAAAATAATGCAATGCTACT+AGG + chr1_3:54646538-54646557 Msa0125860:intron 30.0%
TTTATAACAGCATTGTTTCG+TGG + chr1_3:54646569-54646588 Msa0125860:intron 30.0%
CATCAATGTAAATGTTAGGT+GGG - chr1_3:54646617-54646636 None:intergenic 30.0%
! GTCATTCTCAACATCAATTT+TGG - chr1_3:54646785-54646804 None:intergenic 30.0%
TTAACTACCATCAACTTGAA+AGG - chr1_3:54646858-54646877 None:intergenic 30.0%
TGAGAAAGTCAAATATGTGT+AGG - chr1_3:54647184-54647203 None:intergenic 30.0%
ATGTCACATGTATAGAGATA+TGG - chr1_3:54647219-54647238 None:intergenic 30.0%
TTGTTAGCATAACCCAATTA+AGG - chr1_3:54647339-54647358 None:intergenic 30.0%
!! CTTTTGTAGACTCCATTTTT+TGG - chr1_3:54647696-54647715 None:intergenic 30.0%
ATATTAACAGGGCATAGTTT+GGG + chr1_3:54648000-54648019 Msa0125860:CDS 30.0%
ATGTATTGAAATCCAGATTC+TGG + chr1_3:54648392-54648411 Msa0125860:intron 30.0%
! AGAACTATTTCTCTTTGTTC+TGG + chr1_3:54648430-54648449 Msa0125860:CDS 30.0%
! GAACTATTTCTCTTTGTTCT+GGG + chr1_3:54648431-54648450 Msa0125860:CDS 30.0%
AAAGATCTTAAACGCAGTTT+GGG + chr1_3:54648461-54648480 Msa0125860:CDS 30.0%
!! TTCCTTCTACCATTTGTTAT+AGG + chr1_3:54648498-54648517 Msa0125860:CDS 30.0%
TACCTATAACAAATGGTAGA+AGG - chr1_3:54648503-54648522 None:intergenic 30.0%
! GTATAAACAGAATTGGTTCA+TGG + chr1_3:54648527-54648546 Msa0125860:CDS 30.0%
! TGCTTCAATGATACAACTTT+TGG - chr1_3:54648887-54648906 None:intergenic 30.0%
AAGCAAAATCAGTATGTGAT+AGG + chr1_3:54648902-54648921 Msa0125860:three_prime_UTR 30.0%
AGCAAAATCAGTATGTGATA+GGG + chr1_3:54648903-54648922 Msa0125860:three_prime_UTR 30.0%
CTAAATCAACTCTTGTGTCA+AGG - chr1_3:54645944-54645963 None:intergenic 35.0%
CAAAGGGTTACTATCTATCA+TGG + chr1_3:54645995-54646014 Msa0125860:CDS 35.0%
! GTTTGCAGATGGAATTTTTG+GGG + chr1_3:54646207-54646226 Msa0125860:intron 35.0%
ACAACGTAAGCACATGTATT+TGG + chr1_3:54646418-54646437 Msa0125860:intron 35.0%
CAACGTAAGCACATGTATTT+GGG + chr1_3:54646419-54646438 Msa0125860:intron 35.0%
AACGTAAGCACATGTATTTG+GGG + chr1_3:54646420-54646439 Msa0125860:intron 35.0%
CCATCAATGTAAATGTTAGG+TGG - chr1_3:54646618-54646637 None:intergenic 35.0%
CCACCTAACATTTACATTGA+TGG + chr1_3:54646615-54646634 Msa0125860:intron 35.0%
AGTCAAATATGTGTAGGACT+AGG - chr1_3:54647178-54647197 None:intergenic 35.0%
AAAGAATGTCCTTAGGGTAT+TGG - chr1_3:54647468-54647487 None:intergenic 35.0%
!!! CCATTTTTTGGTAATCTGCA+TGG - chr1_3:54647684-54647703 None:intergenic 35.0%
CCATGCAGATTACCAAAAAA+TGG + chr1_3:54647681-54647700 Msa0125860:intron 35.0%
AATGCAACCACAATCAAGTT+TGG - chr1_3:54647748-54647767 None:intergenic 35.0%
TTGATTGTGGTTGCATTTAG+AGG + chr1_3:54647751-54647770 Msa0125860:CDS 35.0%
CATATTAACAGGGCATAGTT+TGG + chr1_3:54647999-54648018 Msa0125860:CDS 35.0%
CCTTCTAACTGATCTAACAA+CGG - chr1_3:54648078-54648097 None:intergenic 35.0%
AGAGGGATTTGTCATCATAA+GGG - chr1_3:54648227-54648246 None:intergenic 35.0%
AAGAGGGATTTGTCATCATA+AGG - chr1_3:54648228-54648247 None:intergenic 35.0%
! ACTGAAGTGCTTAAAGAAGA+GGG - chr1_3:54648244-54648263 None:intergenic 35.0%
AAGCTGTTGAAAAACAGACA+AGG - chr1_3:54648267-54648286 None:intergenic 35.0%
!! TTTTTCAACAGCTTGTACCA+AGG + chr1_3:54648273-54648292 Msa0125860:CDS 35.0%
! TTTTCAACAGCTTGTACCAA+GGG + chr1_3:54648274-54648293 Msa0125860:CDS 35.0%
TATTGAAATCCAGATTCTGG+AGG + chr1_3:54648395-54648414 Msa0125860:intron 35.0%
! CAAACTGCGTTTAAGATCTT+TGG - chr1_3:54648462-54648481 None:intergenic 35.0%
CAAAGATCTTAAACGCAGTT+TGG + chr1_3:54648460-54648479 Msa0125860:CDS 35.0%
! CTTGTTGGATTGATAATTCC+AGG + chr1_3:54648561-54648580 Msa0125860:CDS 35.0%
GCAAAATCAGTATGTGATAG+GGG + chr1_3:54648904-54648923 Msa0125860:three_prime_UTR 35.0%
GGTTCCGAACAACAAATACA+TGG + chr1_3:54645441-54645460 Msa0125860:CDS 40.0%
!!! TCCACAACACTTGCTTTTTG+TGG - chr1_3:54645486-54645505 None:intergenic 40.0%
! AAAGCAAGTGTTGTGGAACT+AGG + chr1_3:54645489-54645508 Msa0125860:CDS 40.0%
!!! TTTTGGGGCTATACAGCTTT+TGG + chr1_3:54646222-54646241 Msa0125860:CDS 40.0%
AGGTGGGAAACCAATTGTTA+GGG - chr1_3:54646601-54646620 None:intergenic 40.0%
TAGGTGGGAAACCAATTGTT+AGG - chr1_3:54646602-54646621 None:intergenic 40.0%
TCCTCTTTACCAATACCCTA+AGG + chr1_3:54647456-54647475 Msa0125860:intron 40.0%
!! TCCTTAGGGTATTGGTAAAG+AGG - chr1_3:54647460-54647479 None:intergenic 40.0%
! AATCAAGTTTGGCTCAGACT+TGG - chr1_3:54647737-54647756 None:intergenic 40.0%
AAACAGACGTTGATATCTCC+TGG + chr1_3:54647803-54647822 Msa0125860:CDS 40.0%
!! GCTTTGGGACTATTAGAGAA+CGG + chr1_3:54647871-54647890 Msa0125860:CDS 40.0%
CGTAGTAAGCATATTGATGC+TGG - chr1_3:54647927-54647946 None:intergenic 40.0%
GCAACTGAGAGAAATGTTGA+AGG + chr1_3:54647957-54647976 Msa0125860:CDS 40.0%
CCGTTGTTAGATCAGTTAGA+AGG + chr1_3:54648075-54648094 Msa0125860:CDS 40.0%
ACTCCAATGATATGGTTCCT+AGG + chr1_3:54648199-54648218 Msa0125860:CDS 40.0%
GATCCTAGGAACCATATCAT+TGG - chr1_3:54648205-54648224 None:intergenic 40.0%
TTGTCATCATAAGGGATCCT+AGG - chr1_3:54648219-54648238 None:intergenic 40.0%
! GACTGAAGTGCTTAAAGAAG+AGG - chr1_3:54648245-54648264 None:intergenic 40.0%
! ATTGGTTCATGGCATTGTTC+AGG + chr1_3:54648538-54648557 Msa0125860:CDS 40.0%
TAATCTGCAGTGAAATGAGC+TGG - chr1_3:54648591-54648610 None:intergenic 40.0%
TTTGTCTAAGAATCCCAGTC+GGG - chr1_3:54648625-54648644 None:intergenic 40.0%
GTTTGTCTAAGAATCCCAGT+CGG - chr1_3:54648626-54648645 None:intergenic 40.0%
CCTTGGAAATTAGAAGCTCT+AGG - chr1_3:54648650-54648669 None:intergenic 40.0%
CCTAGAGCTTCTAATTTCCA+AGG + chr1_3:54648647-54648666 Msa0125860:CDS 40.0%
GCATAGACATTAGTCATCCT+TGG - chr1_3:54648667-54648686 None:intergenic 40.0%
!! AAATGTGTCGATTCGGTTGA+AGG - chr1_3:54648698-54648717 None:intergenic 40.0%
!! GGAACAGAAATGTGTCGATT+CGG - chr1_3:54648705-54648724 None:intergenic 40.0%
ATATAAGGATCACTGGCACT+GGG - chr1_3:54648842-54648861 None:intergenic 40.0%
TATATAAGGATCACTGGCAC+TGG - chr1_3:54648843-54648862 None:intergenic 40.0%
! GCCACAAAAAGCAAGTGTTG+TGG + chr1_3:54645482-54645501 Msa0125860:CDS 45.0%
! AGCTTCATTGATTGCCCACA+AGG + chr1_3:54645546-54645565 Msa0125860:CDS 45.0%
TTCTTGCCTCAAGTCCTTGT+GGG - chr1_3:54645563-54645582 None:intergenic 45.0%
TTTCTTGCCTCAAGTCCTTG+TGG - chr1_3:54645564-54645583 None:intergenic 45.0%
TTGGAGACATGTTGGAGTCT+TGG + chr1_3:54645664-54645683 Msa0125860:CDS 45.0%
! TCAAGTAATGGAGGGCTCAT+TGG + chr1_3:54645699-54645718 Msa0125860:CDS 45.0%
!!! AAATTTTGGTGGTGCAGGAG+AGG + chr1_3:54645869-54645888 Msa0125860:intron 45.0%
GATAACACCGGAAAAGTCGT+CGG + chr1_3:54645893-54645912 Msa0125860:CDS 45.0%
!! GGGCTATACAGCTTTTGGAA+CGG + chr1_3:54646227-54646246 Msa0125860:CDS 45.0%
GTGGAATCTGCCCTAACAAT+TGG + chr1_3:54646588-54646607 Msa0125860:intron 45.0%
GTCTGAGCCAAACTTGATTG+TGG + chr1_3:54647738-54647757 Msa0125860:CDS 45.0%
TTCCATTGCACAGCGTCAAA+TGG - chr1_3:54647784-54647803 None:intergenic 45.0%
TGGTATGACCTACCAAACGT+GGG + chr1_3:54647823-54647842 Msa0125860:CDS 45.0%
!! TGGTGGGTTCATGAAAGCTT+TGG + chr1_3:54647855-54647874 Msa0125860:CDS 45.0%
! GGTGGGTTCATGAAAGCTTT+GGG + chr1_3:54647856-54647875 Msa0125860:CDS 45.0%
TTGGGACTATTAGAGAACGG+TGG + chr1_3:54647874-54647893 Msa0125860:CDS 45.0%
GACTATTAGAGAACGGTGGA+TGG + chr1_3:54647878-54647897 Msa0125860:CDS 45.0%
TTAACAGGGCATAGTTTGGG+TGG + chr1_3:54648003-54648022 Msa0125860:CDS 45.0%
ACATTTGGGCAACCAAGAGT+TGG + chr1_3:54648105-54648124 Msa0125860:CDS 45.0%
AACTTCTCGTCTCCAACTCT+TGG - chr1_3:54648120-54648139 None:intergenic 45.0%
AGAGTTGGAGACGAGAAGTT+TGG + chr1_3:54648120-54648139 Msa0125860:CDS 45.0%
GTAGATTTCATACCTGCCCT+TGG - chr1_3:54648293-54648312 None:intergenic 45.0%
! TGAAATCCAGATTCTGGAGG+AGG + chr1_3:54648398-54648417 Msa0125860:intron 45.0%
GATCTTAAACGCAGTTTGGG+AGG + chr1_3:54648464-54648483 Msa0125860:CDS 45.0%
ATGGCATTGTTCAGGCTTGT+TGG + chr1_3:54648546-54648565 Msa0125860:CDS 45.0%
TTATGTCAATGCTACCCGAC+TGG + chr1_3:54648608-54648627 Msa0125860:CDS 45.0%
TATGTCAATGCTACCCGACT+GGG + chr1_3:54648609-54648628 Msa0125860:CDS 45.0%
!! AAAAAAATTAAACTTATTAT+AGG - chr1_3:54646346-54646365 None:intergenic 5.0%
TGATTGCCCACAAGGACTTG+AGG + chr1_3:54645554-54645573 Msa0125860:CDS 50.0%
TGCAGGAGAGGTGATAACAC+CGG + chr1_3:54645881-54645900 Msa0125860:intron 50.0%
CTCCATTTGACGCTGTGCAA+TGG + chr1_3:54647779-54647798 Msa0125860:CDS 50.0%
CACGTTTGGTAGGTCATACC+AGG - chr1_3:54647824-54647843 None:intergenic 50.0%
CTGGTATGACCTACCAAACG+TGG + chr1_3:54647822-54647841 Msa0125860:CDS 50.0%
GCATCTTACCCACGTTTGGT+AGG - chr1_3:54647834-54647853 None:intergenic 50.0%
CCATGCATCTTACCCACGTT+TGG - chr1_3:54647838-54647857 None:intergenic 50.0%
CCAAACGTGGGTAAGATGCA+TGG + chr1_3:54647835-54647854 Msa0125860:CDS 50.0%
AACGTGGGTAAGATGCATGG+TGG + chr1_3:54647838-54647857 Msa0125860:CDS 50.0%
ACGTGGGTAAGATGCATGGT+GGG + chr1_3:54647839-54647858 Msa0125860:CDS 50.0%
GCATAGTTTGGGTGGAGCAT+TGG + chr1_3:54648011-54648030 Msa0125860:CDS 50.0%
GCAGTTTGGGAGGTGATTAG+AGG + chr1_3:54648474-54648493 Msa0125860:CDS 50.0%
GTGAAATGAGCTGGTAGTCC+TGG - chr1_3:54648582-54648601 None:intergenic 50.0%
AACACCGGAAAAGTCGTCGG+CGG + chr1_3:54645896-54645915 Msa0125860:CDS 55.0%
! AACTCCGCCGACGACTTTTC+CGG - chr1_3:54645903-54645922 None:intergenic 55.0%
GTCGTCGGCGGAGTTCTTAT+CGG + chr1_3:54645908-54645927 Msa0125860:CDS 55.0%
GCGGAGTTCTTATCGGTGGT+TGG + chr1_3:54645915-54645934 Msa0125860:CDS 55.0%
CAACAGCTTGTACCAAGGGC+AGG + chr1_3:54648278-54648297 Msa0125860:CDS 55.0%
TTGGCTCCTCCTCCAGAATC+TGG - chr1_3:54648407-54648426 None:intergenic 55.0%
! GGATCACTGGCACTGGGAAA+TGG - chr1_3:54648836-54648855 None:intergenic 55.0%
GTCGGCGGAGTTCTTATCGG+TGG + chr1_3:54645911-54645930 Msa0125860:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 54645391 54648945 54645391 ID=Msa0125860;Name=Msa0125860
chr1_3 mRNA 54645391 54648945 54645391 ID=Msa0125860-mRNA-1;Parent=Msa0125860;Name=Msa0125860-mRNA-1;_AED=0.09;_eAED=0.09;_QI=47|1|1|1|1|1|5|268|471
chr1_3 exon 54645391 54645744 54645391 ID=Msa0125860-mRNA-1:exon:16860;Parent=Msa0125860-mRNA-1
chr1_3 exon 54645886 54646079 54645886 ID=Msa0125860-mRNA-1:exon:16861;Parent=Msa0125860-mRNA-1
chr1_3 exon 54646215 54646248 54646215 ID=Msa0125860-mRNA-1:exon:16862;Parent=Msa0125860-mRNA-1
chr1_3 exon 54647689 54648299 54647689 ID=Msa0125860-mRNA-1:exon:16863;Parent=Msa0125860-mRNA-1
chr1_3 exon 54648408 54648945 54648408 ID=Msa0125860-mRNA-1:exon:16864;Parent=Msa0125860-mRNA-1
chr1_3 five_prime_UTR 54645391 54645437 54645391 ID=Msa0125860-mRNA-1:five_prime_utr;Parent=Msa0125860-mRNA-1
chr1_3 CDS 54645438 54645744 54645438 ID=Msa0125860-mRNA-1:cds;Parent=Msa0125860-mRNA-1
chr1_3 CDS 54645886 54646079 54645886 ID=Msa0125860-mRNA-1:cds;Parent=Msa0125860-mRNA-1
chr1_3 CDS 54646215 54646248 54646215 ID=Msa0125860-mRNA-1:cds;Parent=Msa0125860-mRNA-1
chr1_3 CDS 54647689 54648299 54647689 ID=Msa0125860-mRNA-1:cds;Parent=Msa0125860-mRNA-1
chr1_3 CDS 54648408 54648677 54648408 ID=Msa0125860-mRNA-1:cds;Parent=Msa0125860-mRNA-1
chr1_3 three_prime_UTR 54648678 54648945 54648678 ID=Msa0125860-mRNA-1:three_prime_utr;Parent=Msa0125860-mRNA-1
Gene Sequence

>Msa0125860

ATGGGTTCCGAACAACAAATACATGGAGATTATCTATTTCTGAGGCCACAAAAAGCAAGTGTTGTGGAACTAGGAAGCCTCTTGTTTTCATCAAACTTAGCAAATAGAAGCTTCATTGATTGCCCACAAGGACTTGAGGCAAGAAAATTTCGACAAAGATGGCTTCTCTTTACTTCAGTTGTTGCACAAATTGTTCTTGTCGCAATAGATCCCTTCTTGAAAATTATTGGAGACATGTTGGAGTCTTGGCTTAATTGTTTATCAAGTAATGGAGGGCTCATTGGACTCTTCTTCAACTTTCTTAAAGGAGAGGTGATAACACCGGAAAAGTCGTCGGCGGAGTTCTTATCGGTGGTTGGTCACCTTGACACAAGAGTTGATTTAGACAAAAATATTCATCATAAGGATGTAAAGTACAAAGGGTTACTATCTATCATGGCTTCTAAATTTTCGTACGAGAATGAACAAGTCATTAGCAATGCAGTTAGAAATAATTGGGGTATGGAATTTTTGGGGCTATACAGCTTTTGGAACGATTACCAAAAAATGGAGTCTACAAAAGCTATGATAGTGAAAGATACCAAGTCTGAGCCAAACTTGATTGTGGTTGCATTTAGAGGCACAACTCCATTTGACGCTGTGCAATGGAAAACAGACGTTGATATCTCCTGGTATGACCTACCAAACGTGGGTAAGATGCATGGTGGGTTCATGAAAGCTTTGGGACTATTAGAGAACGGTGGATGGCCTAAAGAAATTGATGAAAGAAGCCAGCATCAATATGCTTACTACGCAATTAGAGAGCAACTGAGAGAAATGTTGAAGGAAAATAAGGATGCAAAATTCATATTAACAGGGCATAGTTTGGGTGGAGCATTGGCTATTCTGTTTGTCGCAATGCTAATATTTCATGATGAAGAACCGTTGTTAGATCAGTTAGAAGGTGTTTATACATTTGGGCAACCAAGAGTTGGAGACGAGAAGTTTGGAGAGTTCATGAAAAGCAAGTTGAGAGAGTATGATGTGAAGTACTTTAGATATGTTTACTCCAATGATATGGTTCCTAGGATCCCTTATGATGACAAATCCCTCTTCTTTAAGCACTTCAGTCCTTGTCTGTTTTTCAACAGCTTGTACCAAGGGCAGATTCTGGAGGAGGAGCCAAACAAGAACTATTTCTCTTTGTTCTGGGTGATACCAAAGATCTTAAACGCAGTTTGGGAGGTGATTAGAGGTTTCCTTCTACCATTTGTTATAGGTAAAGAGTATAAACAGAATTGGTTCATGGCATTGTTCAGGCTTGTTGGATTGATAATTCCAGGACTACCAGCTCATTTCACTGCAGATTATGTCAATGCTACCCGACTGGGATTCTTAGACAAACACCTAGAGCTTCTAATTTCCAAGGATGACTAA

Protein sequence

>Msa0125860

MGSEQQIHGDYLFLRPQKASVVELGSLLFSSNLANRSFIDCPQGLEARKFRQRWLLFTSVVAQIVLVAIDPFLKIIGDMLESWLNCLSSNGGLIGLFFNFLKGEVITPEKSSAEFLSVVGHLDTRVDLDKNIHHKDVKYKGLLSIMASKFSYENEQVISNAVRNNWGMEFLGLYSFWNDYQKMESTKAMIVKDTKSEPNLIVVAFRGTTPFDAVQWKTDVDISWYDLPNVGKMHGGFMKALGLLENGGWPKEIDERSQHQYAYYAIREQLREMLKENKDAKFILTGHSLGGALAILFVAMLIFHDEEPLLDQLEGVYTFGQPRVGDEKFGEFMKSKLREYDVKYFRYVYSNDMVPRIPYDDKSLFFKHFSPCLFFNSLYQGQILEEEPNKNYFSLFWVIPKILNAVWEVIRGFLLPFVIGKEYKQNWFMALFRLVGLIIPGLPAHFTADYVNATRLGFLDKHLELLISKDD*