AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0379480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379480 MtrunA17_Chr3g0132471 92.878 337 5 5 1 334 1 321 0.0 629
Msa0379480 MtrunA17_Chr5g0426851 55.060 336 106 10 1 330 1 297 6.39e-107 314
Msa0379480 MtrunA17_Chr7g0273081 50.456 329 129 6 1 328 14 309 2.65e-97 290
Msa0379480 MtrunA17_Chr1g0191571 51.190 336 140 7 1 328 14 333 1.67e-93 281
Msa0379480 MtrunA17_Chr8g0366551 57.209 215 75 3 120 328 113 316 3.95e-80 247
Msa0379480 MtrunA17_Chr8g0345871 52.427 206 84 3 120 325 170 361 2.65e-58 192
Msa0379480 MtrunA17_Chr0c01g0489461 47.556 225 93 6 112 322 176 389 2.40e-56 188
Msa0379480 MtrunA17_Chr2g0287761 41.146 192 102 4 131 320 1 183 8.22e-40 139
Msa0379480 MtrunA17_Chr1g0158941 35.156 256 137 7 85 320 44 290 1.10e-35 130
Msa0379480 MtrunA17_Chr3g0126381 27.778 198 105 5 160 320 1 197 1.95e-15 73.9
Msa0379480 MtrunA17_Chr1g0211081 27.014 211 120 7 134 323 319 516 1.09e-13 71.6
Msa0379480 MtrunA17_Chr3g0126361 57.143 56 20 1 111 162 77 132 1.15e-12 64.7
Msa0379480 MtrunA17_Chr2g0333621 24.176 273 176 6 63 329 63 310 5.96e-12 65.5
Msa0379480 MtrunA17_Chr8g0366751 26.531 196 120 6 111 300 445 622 9.75e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379480 AT1G72210.1 48.159 353 127 11 1 331 1 319 1.64e-90 273
Msa0379480 AT1G22490.1 45.401 337 141 9 1 328 1 303 1.67e-84 258
Msa0379480 AT1G72210.2 46.914 324 116 11 1 302 1 290 2.19e-75 234
Msa0379480 AT1G22490.2 43.730 311 132 9 1 302 1 277 2.04e-69 220
Msa0379480 AT4G01460.1 41.784 213 118 1 119 331 103 309 9.19e-53 176
Msa0379480 AT4G01460.2 41.784 213 118 1 119 331 103 309 9.19e-53 176
Msa0379480 AT5G65320.1 47.059 204 100 3 127 328 98 295 2.82e-52 174
Msa0379480 AT3G24140.2 44.196 224 108 4 110 322 176 393 1.40e-51 176
Msa0379480 AT3G24140.1 44.196 224 108 4 110 322 176 393 1.60e-51 176
Msa0379480 AT2G46810.2 45.545 202 93 3 122 322 112 297 3.06e-50 169
Msa0379480 AT2G46810.3 45.545 202 93 3 122 322 172 357 8.44e-50 170
Msa0379480 AT2G46810.1 45.545 202 93 3 122 322 184 369 9.10e-50 170
Msa0379480 AT5G46690.1 43.802 242 87 7 120 328 77 302 6.46e-49 167
Msa0379480 AT5G65320.2 48.588 177 84 2 127 302 98 268 1.21e-47 162
Msa0379480 AT3G61950.2 44.608 204 95 3 120 322 116 302 1.06e-46 160
Msa0379480 AT3G61950.1 44.608 204 95 3 120 322 167 353 1.89e-46 161
Msa0379480 AT2G46810.4 40.435 230 92 4 122 322 112 325 1.03e-44 155
Msa0379480 AT3G61950.6 45.882 170 75 2 120 289 116 268 1.72e-42 149
Msa0379480 AT3G61950.3 45.882 170 75 2 120 289 167 319 4.04e-42 149
Msa0379480 AT5G46690.2 43.056 216 74 7 120 302 77 276 1.20e-38 139
Msa0379480 AT3G06120.1 36.683 199 108 5 131 320 1 190 5.14e-32 119
Msa0379480 AT5G53210.1 66.154 65 22 0 129 193 100 164 4.20e-23 99.0
Msa0379480 AT5G53210.2 66.154 65 22 0 129 193 100 164 4.82e-23 98.6
Msa0379480 AT3G61950.4 69.767 43 13 0 120 162 167 209 9.24e-14 70.1
Msa0379480 AT3G61950.5 69.767 43 13 0 120 162 167 209 9.24e-14 70.1

Find 82 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCCATTGTTTCTGTTCT+TGG 0.146665 3_1:+80637933 None:intergenic
AGAACAACATTTACAGTCTA+TGG 0.205160 3_1:-80638101 Msa0379480:CDS
TGATCAACGGTGCAGATTTC+AGG 0.214308 3_1:+80639233 None:intergenic
TTCTCCATCGTTAAGTGATT+TGG 0.220241 3_1:-80637431 Msa0379480:three_prime_UTR
GGTGACCAAGCTTCTATTAT+TGG 0.242168 3_1:-80638151 Msa0379480:CDS
TTGTTGGGTTACAAAATCTT+AGG 0.275677 3_1:-80637823 Msa0379480:CDS
AACAAAATCTCCATGCAAAC+TGG 0.290252 3_1:-80639307 Msa0379480:CDS
TGTTACCACGGTCGATGATA+TGG 0.322275 3_1:-80637780 Msa0379480:CDS
CTGCTGTGAATCAACTATTA+AGG 0.338632 3_1:-80637562 Msa0379480:CDS
CTAGTTGAAATGTGTTAATT+AGG 0.354436 3_1:-80637284 Msa0379480:three_prime_UTR
TTTAAGCCTATGTTCTCGTT+TGG 0.392393 3_1:+80638055 None:intergenic
TGCCTTCTTCTTATGTTCAA+AGG 0.395209 3_1:-80639007 Msa0379480:CDS
GTTGATAAGCCAGTTCTTGT+TGG 0.407779 3_1:+80637534 None:intergenic
GTGTTTATTGAGAATATTAG+AGG 0.408257 3_1:-80637392 Msa0379480:three_prime_UTR
GTTCTGTTAAAGATCATCAA+TGG 0.410588 3_1:-80639277 Msa0379480:CDS
CTTTGATCAAGCAGACCTAT+TGG 0.418017 3_1:+80637204 None:intergenic
GAGAACATAGGCTTAAATAA+TGG 0.421439 3_1:-80638049 Msa0379480:CDS
AACTTATGAAGATTGTTGTT+GGG 0.423130 3_1:-80637838 Msa0379480:CDS
GCCTTCTTCTTATGTTCAAA+GGG 0.428871 3_1:-80639006 Msa0379480:intron
TTCAATAATAAGCTACCAAT+AGG 0.438365 3_1:-80637219 Msa0379480:three_prime_UTR
CAACTTATGAAGATTGTTGT+TGG 0.446451 3_1:-80637839 Msa0379480:CDS
TTCTGTTAAAGATCATCAAT+GGG 0.457250 3_1:-80639276 Msa0379480:CDS
TGCAGTTGCTGTTGCTTCCA+CGG 0.462288 3_1:+80639169 None:intergenic
GAACAACATTTACAGTCTAT+GGG 0.463577 3_1:-80638100 Msa0379480:CDS
TATTGTTGTTGATGATTCCT+AGG 0.464596 3_1:+80639345 None:intergenic
TGATTGGAGCAGGTAGAGGA+GGG 0.476683 3_1:-80637617 Msa0379480:intron
ATGAGTACTTGAATGTTCTT+CGG 0.477520 3_1:-80639037 Msa0379480:CDS
ACAATCTTCATAAGTTGTCC+TGG 0.483622 3_1:+80637845 None:intergenic
AAGGACGGTCCAACAAGAAC+TGG 0.486926 3_1:-80637543 Msa0379480:CDS
TTGATTGGAGCAGGTAGAGG+AGG 0.489389 3_1:-80637618 Msa0379480:intron
CTCCTCCAATAATAGAAGCT+TGG 0.501188 3_1:+80638146 None:intergenic
GAAGGAGGAGTAGTGAAGGT+AGG 0.507143 3_1:+80639197 None:intergenic
AACAAGAATCCCAGTTTGCA+TGG 0.514438 3_1:+80639297 None:intergenic
AAAGTGAAGAATTCAGCAAA+AGG 0.515194 3_1:+80638022 None:intergenic
GGTAACATTAAGATGAAGAA+TGG 0.520032 3_1:+80637796 None:intergenic
GTTGCTTCCACGGTGGAAGA+AGG 0.520106 3_1:+80639179 None:intergenic
GACCAAGCTTCTATTATTGG+AGG 0.520738 3_1:-80638148 Msa0379480:CDS
TGTAATTCACATCATACTGT+TGG 0.529013 3_1:+80637249 None:intergenic
AAGAGGAGATTGAAAATCAA+AGG 0.536216 3_1:-80639103 Msa0379480:CDS
GAACAAGAGAATGTTCTCCT+AGG 0.539799 3_1:-80639362 Msa0379480:CDS
CTAATTAACACATTTCAACT+AGG 0.541454 3_1:+80637285 None:intergenic
TTACCAAGAACAGAAACAAT+GGG 0.542341 3_1:-80637936 Msa0379480:CDS
TCTTCTGATAGCAGCAATTG+TGG 0.542739 3_1:-80637323 Msa0379480:three_prime_UTR
GGAAGAAGGAGGAGTAGTGA+AGG 0.546130 3_1:+80639193 None:intergenic
TCCTTGTAACTATATGTGAA+TGG 0.548758 3_1:+80639434 None:intergenic
ACCCTTTGAACATAAGAAGA+AGG 0.558671 3_1:+80639005 None:intergenic
TCTTTACTCAGTTAGTGTCA+AGG 0.560473 3_1:-80637756 Msa0379480:intron
ATTACCAAGAACAGAAACAA+TGG 0.564607 3_1:-80637937 Msa0379480:CDS
GATTGGAGCAGGTAGAGGAG+GGG 0.565920 3_1:-80637616 Msa0379480:intron
TGTTTATTGAGAATATTAGA+GGG 0.569855 3_1:-80637391 Msa0379480:three_prime_UTR
AATAATGGCTCTTGAAACTG+TGG 0.572614 3_1:-80639474 None:intergenic
AAATCACTTAACGATGGAGA+AGG 0.575886 3_1:+80637433 None:intergenic
ATGTGAATGGATCTTGTTGT+GGG 0.578863 3_1:+80639447 None:intergenic
ACAAAATCTCCATGCAAACT+GGG 0.583052 3_1:-80639306 Msa0379480:CDS
AGGAGCAATAAACTTTGTGA+AGG 0.602345 3_1:-80638128 Msa0379480:CDS
CAAGAGTGCAAAGAACAAAG+AGG 0.609385 3_1:-80639120 Msa0379480:CDS
AAAGAACCAAACGAGAACAT+AGG 0.609692 3_1:-80638061 Msa0379480:CDS
AACGGTGCAGATTTCAGGAG+AGG 0.610812 3_1:+80639238 None:intergenic
GGGGAGTCAGCTGAATAGTG+TGG 0.613845 3_1:-80637597 Msa0379480:CDS
TCCATTCACATATAGTTACA+AGG 0.620151 3_1:-80639435 Msa0379480:CDS
TCTTCATCTTAATGTTACCA+CGG 0.620808 3_1:-80637792 Msa0379480:CDS
CAACAACAACAACGTCACAA+TGG 0.620930 3_1:-80637969 Msa0379480:CDS
TTTATTGAGAATATTAGAGG+GGG 0.621085 3_1:-80637389 Msa0379480:three_prime_UTR
AGAACAGAAACAATGGGCTG+TGG 0.630328 3_1:-80637930 Msa0379480:CDS
AACAACATTTACAGTCTATG+GGG 0.630582 3_1:-80638099 Msa0379480:CDS
CAACAGCAACTGCAACGTGT+AGG 0.632313 3_1:-80639160 Msa0379480:CDS
GCTTCCACGGTGGAAGAAGG+AGG 0.636333 3_1:+80639182 None:intergenic
GTTTATTGAGAATATTAGAG+GGG 0.638772 3_1:-80637390 Msa0379480:three_prime_UTR
GGCAGACATTGAAGTTACAA+TGG 0.641899 3_1:-80637909 Msa0379480:CDS
GTGAAGAATTCAGCAAAAGG+TGG 0.646381 3_1:+80638025 None:intergenic
TGCTGTGATAGTTTGATCAA+CGG 0.648608 3_1:+80639220 None:intergenic
ATATCCAAATCACTTAACGA+TGG 0.651147 3_1:+80637427 None:intergenic
TATGTGAATGGATCTTGTTG+TGG 0.651367 3_1:+80639446 None:intergenic
ACAACATTTACAGTCTATGG+GGG 0.663491 3_1:-80638098 Msa0379480:CDS
GAATAGTGTGGATGAAATTG+CGG 0.673702 3_1:-80637585 Msa0379480:CDS
TGTGAATCAACTATTAAGGA+CGG 0.674482 3_1:-80637558 Msa0379480:CDS
TACTCCTCCTTCTTCCACCG+TGG 0.677625 3_1:-80639186 Msa0379480:CDS
TGACTATGATCATCTTCATG+CGG 0.681857 3_1:-80639387 Msa0379480:CDS
GTTGCACTTGTTGTGTACTG+AGG 0.689048 3_1:+80637998 None:intergenic
AAGAACCATATCATCGACCG+TGG 0.707791 3_1:+80637775 None:intergenic
CAACATTTACAGTCTATGGG+GGG 0.730568 3_1:-80638097 Msa0379480:CDS
AGTTGCTGTTGCTTCCACGG+TGG 0.802421 3_1:+80639172 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTAAAAAATTAAA+TGG + chr3_1:80638992-80639011 None:intergenic 0.0%
!!! AATTTTTTTAAAAAATTAAA+TGG + chr3_1:80638992-80639011 None:intergenic 0.0%
!! AAATATAATTAGAAAGTTAA+CGG + chr3_1:80637860-80637879 None:intergenic 10.0%
!! TATTTGCATATTTATTTATA+TGG - chr3_1:80638161-80638180 Msa0379480:intron 10.0%
!!! ATTAGAAATTTTAAGTAATT+TGG - chr3_1:80639014-80639033 Msa0379480:CDS 10.0%
!!! TTAATTAATTTATGAGTTTT+GGG - chr3_1:80639037-80639056 Msa0379480:CDS 10.0%
!! AAATATAATTAGAAAGTTAA+CGG + chr3_1:80637860-80637879 None:intergenic 10.0%
!! TATTTGCATATTTATTTATA+TGG - chr3_1:80638161-80638180 Msa0379480:intron 10.0%
!!! ATTAGAAATTTTAAGTAATT+TGG - chr3_1:80639014-80639033 Msa0379480:CDS 10.0%
!!! TTAATTAATTTATGAGTTTT+GGG - chr3_1:80639037-80639056 Msa0379480:CDS 10.0%
!! AATATAATTAGAAAGTTAAC+GGG + chr3_1:80637859-80637878 None:intergenic 15.0%
!!! GGTTAATTTTTATTGATTAT+TGG - chr3_1:80638182-80638201 Msa0379480:intron 15.0%
!!! TTAAAATTATTTATTTCTGC+TGG - chr3_1:80638963-80638982 Msa0379480:intron 15.0%
!!! GTTAATTAATTTATGAGTTT+TGG - chr3_1:80639036-80639055 Msa0379480:CDS 15.0%
!!! ATTTTAAAGTAAATTAAGCA+AGG + chr3_1:80639219-80639238 None:intergenic 15.0%
!! AATATAATTAGAAAGTTAAC+GGG + chr3_1:80637859-80637878 None:intergenic 15.0%
!!! GGTTAATTTTTATTGATTAT+TGG - chr3_1:80638182-80638201 Msa0379480:intron 15.0%
!!! TTAAAATTATTTATTTCTGC+TGG - chr3_1:80638963-80638982 Msa0379480:intron 15.0%
!!! GTTAATTAATTTATGAGTTT+TGG - chr3_1:80639036-80639055 Msa0379480:CDS 15.0%
!!! ATTTTAAAGTAAATTAAGCA+AGG + chr3_1:80639219-80639238 None:intergenic 15.0%
!!! ATTTGTTTTACTTATGATAG+AGG - chr3_1:80637957-80637976 Msa0379480:CDS 20.0%
!! TTTAAGCTCTTAAAAAGATT+AGG + chr3_1:80638236-80638255 None:intergenic 20.0%
!! ACACTATTAGTACATAAAAA+GGG - chr3_1:80638268-80638287 Msa0379480:intron 20.0%
!! AATTTATGTTTATTGTGCAA+AGG - chr3_1:80638334-80638353 Msa0379480:intron 20.0%
!! TGTTTACACAAAATAAGTAT+TGG + chr3_1:80638432-80638451 None:intergenic 20.0%
!! AATTGTTATGTGAGTTAAAA+CGG - chr3_1:80638454-80638473 Msa0379480:intron 20.0%
!!! TTTTTTCAATCAAATACACA+TGG + chr3_1:80638510-80638529 None:intergenic 20.0%
!! TGTATTTGATTGAAAAAACA+GGG - chr3_1:80638512-80638531 Msa0379480:intron 20.0%
!! TGTTTATTGAGAATATTAGA+GGG - chr3_1:80639293-80639312 Msa0379480:CDS 20.0%
!!! ATTTGTTTTACTTATGATAG+AGG - chr3_1:80637957-80637976 Msa0379480:CDS 20.0%
!! TTTAAGCTCTTAAAAAGATT+AGG + chr3_1:80638236-80638255 None:intergenic 20.0%
!! ACACTATTAGTACATAAAAA+GGG - chr3_1:80638268-80638287 Msa0379480:intron 20.0%
!! AATTTATGTTTATTGTGCAA+AGG - chr3_1:80638334-80638353 Msa0379480:intron 20.0%
!! TGTTTACACAAAATAAGTAT+TGG + chr3_1:80638432-80638451 None:intergenic 20.0%
!! AATTGTTATGTGAGTTAAAA+CGG - chr3_1:80638454-80638473 Msa0379480:intron 20.0%
!!! TTTTTTCAATCAAATACACA+TGG + chr3_1:80638510-80638529 None:intergenic 20.0%
!! TGTATTTGATTGAAAAAACA+GGG - chr3_1:80638512-80638531 Msa0379480:intron 20.0%
!! TGTTTATTGAGAATATTAGA+GGG - chr3_1:80639293-80639312 Msa0379480:CDS 20.0%
! TTCTGTTAAAGATCATCAAT+GGG - chr3_1:80637408-80637427 Msa0379480:three_prime_UTR 25.0%
! AACTTCAAAGTGAAAATTGA+AGG + chr3_1:80637895-80637914 None:intergenic 25.0%
!! AAGTTGTCTTTAAAGAATTG+TGG - chr3_1:80638026-80638045 Msa0379480:CDS 25.0%
!! AGTTGTCTTTAAAGAATTGT+GGG - chr3_1:80638027-80638046 Msa0379480:CDS 25.0%
! AGCTAACACTCAATAAAAAT+TGG - chr3_1:80638056-80638075 Msa0379480:CDS 25.0%
!! AGGTTGTCTTTGAAAAATTA+TGG + chr3_1:80638216-80638235 None:intergenic 25.0%
! GACACTATTAGTACATAAAA+AGG - chr3_1:80638267-80638286 Msa0379480:intron 25.0%
! GTGTATTTGATTGAAAAAAC+AGG - chr3_1:80638511-80638530 Msa0379480:intron 25.0%
!! AACTTATGAAGATTGTTGTT+GGG - chr3_1:80638846-80638865 Msa0379480:intron 25.0%
! GTGTTTATTGAGAATATTAG+AGG - chr3_1:80639292-80639311 Msa0379480:CDS 25.0%
! GTTTATTGAGAATATTAGAG+GGG - chr3_1:80639294-80639313 Msa0379480:CDS 25.0%
! TTTATTGAGAATATTAGAGG+GGG - chr3_1:80639295-80639314 Msa0379480:CDS 25.0%
! CTAATTAACACATTTCAACT+AGG + chr3_1:80639402-80639421 None:intergenic 25.0%
! CTAGTTGAAATGTGTTAATT+AGG - chr3_1:80639400-80639419 Msa0379480:CDS 25.0%
! TTCAATAATAAGCTACCAAT+AGG - chr3_1:80639465-80639484 Msa0379480:CDS 25.0%
! TTCTGTTAAAGATCATCAAT+GGG - chr3_1:80637408-80637427 Msa0379480:three_prime_UTR 25.0%
! AACTTCAAAGTGAAAATTGA+AGG + chr3_1:80637895-80637914 None:intergenic 25.0%
!! AAGTTGTCTTTAAAGAATTG+TGG - chr3_1:80638026-80638045 Msa0379480:CDS 25.0%
!! AGTTGTCTTTAAAGAATTGT+GGG - chr3_1:80638027-80638046 Msa0379480:CDS 25.0%
! AGCTAACACTCAATAAAAAT+TGG - chr3_1:80638056-80638075 Msa0379480:CDS 25.0%
!! AGGTTGTCTTTGAAAAATTA+TGG + chr3_1:80638216-80638235 None:intergenic 25.0%
! GACACTATTAGTACATAAAA+AGG - chr3_1:80638267-80638286 Msa0379480:intron 25.0%
! GTGTATTTGATTGAAAAAAC+AGG - chr3_1:80638511-80638530 Msa0379480:intron 25.0%
!! AACTTATGAAGATTGTTGTT+GGG - chr3_1:80638846-80638865 Msa0379480:intron 25.0%
! GTGTTTATTGAGAATATTAG+AGG - chr3_1:80639292-80639311 Msa0379480:CDS 25.0%
! GTTTATTGAGAATATTAGAG+GGG - chr3_1:80639294-80639313 Msa0379480:CDS 25.0%
! TTTATTGAGAATATTAGAGG+GGG - chr3_1:80639295-80639314 Msa0379480:CDS 25.0%
! CTAATTAACACATTTCAACT+AGG + chr3_1:80639402-80639421 None:intergenic 25.0%
! CTAGTTGAAATGTGTTAATT+AGG - chr3_1:80639400-80639419 Msa0379480:CDS 25.0%
! TTCAATAATAAGCTACCAAT+AGG - chr3_1:80639465-80639484 Msa0379480:CDS 25.0%
TCCATTCACATATAGTTACA+AGG - chr3_1:80637249-80637268 Msa0379480:three_prime_UTR 30.0%
TCCTTGTAACTATATGTGAA+TGG + chr3_1:80637253-80637272 None:intergenic 30.0%
!! TATTGTTGTTGATGATTCCT+AGG + chr3_1:80637342-80637361 None:intergenic 30.0%
GTTCTGTTAAAGATCATCAA+TGG - chr3_1:80637407-80637426 Msa0379480:three_prime_UTR 30.0%
AAGAGGAGATTGAAAATCAA+AGG - chr3_1:80637581-80637600 Msa0379480:CDS 30.0%
ATGAGTACTTGAATGTTCTT+CGG - chr3_1:80637647-80637666 Msa0379480:intron 30.0%
!! CTTTGAAGTTTGAATGTATG+TGG - chr3_1:80637905-80637924 Msa0379480:CDS 30.0%
AAGTTTGAATGTATGTGGTT+AGG - chr3_1:80637910-80637929 Msa0379480:CDS 30.0%
TACTTATGATAGAGGAAAGA+TGG - chr3_1:80637965-80637984 Msa0379480:CDS 30.0%
AGAACAACATTTACAGTCTA+TGG - chr3_1:80638583-80638602 Msa0379480:intron 30.0%
GAACAACATTTACAGTCTAT+GGG - chr3_1:80638584-80638603 Msa0379480:intron 30.0%
AACAACATTTACAGTCTATG+GGG - chr3_1:80638585-80638604 Msa0379480:intron 30.0%
!! TTGGTTCTTTCGTTTTCTTT+TGG + chr3_1:80638613-80638632 None:intergenic 30.0%
GAGAACATAGGCTTAAATAA+TGG - chr3_1:80638635-80638654 Msa0379480:intron 30.0%
AAAGTGAAGAATTCAGCAAA+AGG + chr3_1:80638665-80638684 None:intergenic 30.0%
ATTACCAAGAACAGAAACAA+TGG - chr3_1:80638747-80638766 Msa0379480:intron 30.0%
TTACCAAGAACAGAAACAAT+GGG - chr3_1:80638748-80638767 Msa0379480:intron 30.0%
! CTTGGATAGAATTTTCATGT+TGG + chr3_1:80638813-80638832 None:intergenic 30.0%
ATTCTATCCAAGAAAAAACC+AGG - chr3_1:80638821-80638840 Msa0379480:intron 30.0%
CAACTTATGAAGATTGTTGT+TGG - chr3_1:80638845-80638864 Msa0379480:intron 30.0%
TTGTTGGGTTACAAAATCTT+AGG - chr3_1:80638861-80638880 Msa0379480:intron 30.0%
GGTAACATTAAGATGAAGAA+TGG + chr3_1:80638891-80638910 None:intergenic 30.0%
TCTTCATCTTAATGTTACCA+CGG - chr3_1:80638892-80638911 Msa0379480:intron 30.0%
!!! AGTTTTGGGTATGAATTGAT+TGG - chr3_1:80639051-80639070 Msa0379480:CDS 30.0%
TGTGAATCAACTATTAAGGA+CGG - chr3_1:80639126-80639145 Msa0379480:CDS 30.0%
ATATCCAAATCACTTAACGA+TGG + chr3_1:80639260-80639279 None:intergenic 30.0%
TGTAATTCACATCATACTGT+TGG + chr3_1:80639438-80639457 None:intergenic 30.0%
TCCATTCACATATAGTTACA+AGG - chr3_1:80637249-80637268 Msa0379480:three_prime_UTR 30.0%
TCCTTGTAACTATATGTGAA+TGG + chr3_1:80637253-80637272 None:intergenic 30.0%
!! TATTGTTGTTGATGATTCCT+AGG + chr3_1:80637342-80637361 None:intergenic 30.0%
GTTCTGTTAAAGATCATCAA+TGG - chr3_1:80637407-80637426 Msa0379480:three_prime_UTR 30.0%
AAGAGGAGATTGAAAATCAA+AGG - chr3_1:80637581-80637600 Msa0379480:CDS 30.0%
ATGAGTACTTGAATGTTCTT+CGG - chr3_1:80637647-80637666 Msa0379480:intron 30.0%
!! CTTTGAAGTTTGAATGTATG+TGG - chr3_1:80637905-80637924 Msa0379480:CDS 30.0%
AAGTTTGAATGTATGTGGTT+AGG - chr3_1:80637910-80637929 Msa0379480:CDS 30.0%
TACTTATGATAGAGGAAAGA+TGG - chr3_1:80637965-80637984 Msa0379480:CDS 30.0%
AGAACAACATTTACAGTCTA+TGG - chr3_1:80638583-80638602 Msa0379480:intron 30.0%
GAACAACATTTACAGTCTAT+GGG - chr3_1:80638584-80638603 Msa0379480:intron 30.0%
AACAACATTTACAGTCTATG+GGG - chr3_1:80638585-80638604 Msa0379480:intron 30.0%
!! TTGGTTCTTTCGTTTTCTTT+TGG + chr3_1:80638613-80638632 None:intergenic 30.0%
GAGAACATAGGCTTAAATAA+TGG - chr3_1:80638635-80638654 Msa0379480:intron 30.0%
AAAGTGAAGAATTCAGCAAA+AGG + chr3_1:80638665-80638684 None:intergenic 30.0%
ATTACCAAGAACAGAAACAA+TGG - chr3_1:80638747-80638766 Msa0379480:intron 30.0%
TTACCAAGAACAGAAACAAT+GGG - chr3_1:80638748-80638767 Msa0379480:intron 30.0%
! CTTGGATAGAATTTTCATGT+TGG + chr3_1:80638813-80638832 None:intergenic 30.0%
ATTCTATCCAAGAAAAAACC+AGG - chr3_1:80638821-80638840 Msa0379480:intron 30.0%
CAACTTATGAAGATTGTTGT+TGG - chr3_1:80638845-80638864 Msa0379480:intron 30.0%
TTGTTGGGTTACAAAATCTT+AGG - chr3_1:80638861-80638880 Msa0379480:intron 30.0%
GGTAACATTAAGATGAAGAA+TGG + chr3_1:80638891-80638910 None:intergenic 30.0%
TCTTCATCTTAATGTTACCA+CGG - chr3_1:80638892-80638911 Msa0379480:intron 30.0%
!!! AGTTTTGGGTATGAATTGAT+TGG - chr3_1:80639051-80639070 Msa0379480:CDS 30.0%
TGTGAATCAACTATTAAGGA+CGG - chr3_1:80639126-80639145 Msa0379480:CDS 30.0%
ATATCCAAATCACTTAACGA+TGG + chr3_1:80639260-80639279 None:intergenic 30.0%
TGTAATTCACATCATACTGT+TGG + chr3_1:80639438-80639457 None:intergenic 30.0%
! ATGTGAATGGATCTTGTTGT+GGG + chr3_1:80637240-80637259 None:intergenic 35.0%
TATGTGAATGGATCTTGTTG+TGG + chr3_1:80637241-80637260 None:intergenic 35.0%
TGACTATGATCATCTTCATG+CGG - chr3_1:80637297-80637316 Msa0379480:three_prime_UTR 35.0%
!!! GAGATTTTGTTGTTCTACGT+TGG + chr3_1:80637368-80637387 None:intergenic 35.0%
AACAAAATCTCCATGCAAAC+TGG - chr3_1:80637377-80637396 Msa0379480:three_prime_UTR 35.0%
ACAAAATCTCCATGCAAACT+GGG - chr3_1:80637378-80637397 Msa0379480:three_prime_UTR 35.0%
TGCTGTGATAGTTTGATCAA+CGG + chr3_1:80637467-80637486 None:intergenic 35.0%
TGCCTTCTTCTTATGTTCAA+AGG - chr3_1:80637677-80637696 Msa0379480:intron 35.0%
GCCTTCTTCTTATGTTCAAA+GGG - chr3_1:80637678-80637697 Msa0379480:intron 35.0%
ACCCTTTGAACATAAGAAGA+AGG + chr3_1:80637682-80637701 None:intergenic 35.0%
TGGACACATATGCAAATCTA+TGG - chr3_1:80638076-80638095 Msa0379480:CDS 35.0%
CATATGCAAATCTATGGAAG+TGG - chr3_1:80638082-80638101 Msa0379480:CDS 35.0%
!!! TCTATGGAAGTGGCATTTTT+TGG - chr3_1:80638092-80638111 Msa0379480:CDS 35.0%
!!! CTATGGAAGTGGCATTTTTT+GGG - chr3_1:80638093-80638112 Msa0379480:CDS 35.0%
AGGAGCAATAAACTTTGTGA+AGG - chr3_1:80638556-80638575 Msa0379480:intron 35.0%
ACAACATTTACAGTCTATGG+GGG - chr3_1:80638586-80638605 Msa0379480:intron 35.0%
AAAGAACCAAACGAGAACAT+AGG - chr3_1:80638623-80638642 Msa0379480:intron 35.0%
TTTAAGCCTATGTTCTCGTT+TGG + chr3_1:80638632-80638651 None:intergenic 35.0%
!!! AAGTTGTCCTGGTTTTTTCT+TGG + chr3_1:80638831-80638850 None:intergenic 35.0%
ACAATCTTCATAAGTTGTCC+TGG + chr3_1:80638842-80638861 None:intergenic 35.0%
TCTTTACTCAGTTAGTGTCA+AGG - chr3_1:80638928-80638947 Msa0379480:intron 35.0%
GAATAGTGTGGATGAAATTG+CGG - chr3_1:80639099-80639118 Msa0379480:CDS 35.0%
CTGCTGTGAATCAACTATTA+AGG - chr3_1:80639122-80639141 Msa0379480:CDS 35.0%
AAATCACTTAACGATGGAGA+AGG + chr3_1:80639254-80639273 None:intergenic 35.0%
TTCTCCATCGTTAAGTGATT+TGG - chr3_1:80639253-80639272 Msa0379480:CDS 35.0%
! ATGTGAATGGATCTTGTTGT+GGG + chr3_1:80637240-80637259 None:intergenic 35.0%
TATGTGAATGGATCTTGTTG+TGG + chr3_1:80637241-80637260 None:intergenic 35.0%
TGACTATGATCATCTTCATG+CGG - chr3_1:80637297-80637316 Msa0379480:three_prime_UTR 35.0%
!!! GAGATTTTGTTGTTCTACGT+TGG + chr3_1:80637368-80637387 None:intergenic 35.0%
AACAAAATCTCCATGCAAAC+TGG - chr3_1:80637377-80637396 Msa0379480:three_prime_UTR 35.0%
ACAAAATCTCCATGCAAACT+GGG - chr3_1:80637378-80637397 Msa0379480:three_prime_UTR 35.0%
TGCTGTGATAGTTTGATCAA+CGG + chr3_1:80637467-80637486 None:intergenic 35.0%
TGCCTTCTTCTTATGTTCAA+AGG - chr3_1:80637677-80637696 Msa0379480:intron 35.0%
GCCTTCTTCTTATGTTCAAA+GGG - chr3_1:80637678-80637697 Msa0379480:intron 35.0%
ACCCTTTGAACATAAGAAGA+AGG + chr3_1:80637682-80637701 None:intergenic 35.0%
TGGACACATATGCAAATCTA+TGG - chr3_1:80638076-80638095 Msa0379480:CDS 35.0%
CATATGCAAATCTATGGAAG+TGG - chr3_1:80638082-80638101 Msa0379480:CDS 35.0%
!!! TCTATGGAAGTGGCATTTTT+TGG - chr3_1:80638092-80638111 Msa0379480:CDS 35.0%
!!! CTATGGAAGTGGCATTTTTT+GGG - chr3_1:80638093-80638112 Msa0379480:CDS 35.0%
AGGAGCAATAAACTTTGTGA+AGG - chr3_1:80638556-80638575 Msa0379480:intron 35.0%
ACAACATTTACAGTCTATGG+GGG - chr3_1:80638586-80638605 Msa0379480:intron 35.0%
AAAGAACCAAACGAGAACAT+AGG - chr3_1:80638623-80638642 Msa0379480:intron 35.0%
TTTAAGCCTATGTTCTCGTT+TGG + chr3_1:80638632-80638651 None:intergenic 35.0%
!!! AAGTTGTCCTGGTTTTTTCT+TGG + chr3_1:80638831-80638850 None:intergenic 35.0%
ACAATCTTCATAAGTTGTCC+TGG + chr3_1:80638842-80638861 None:intergenic 35.0%
TCTTTACTCAGTTAGTGTCA+AGG - chr3_1:80638928-80638947 Msa0379480:intron 35.0%
GAATAGTGTGGATGAAATTG+CGG - chr3_1:80639099-80639118 Msa0379480:CDS 35.0%
CTGCTGTGAATCAACTATTA+AGG - chr3_1:80639122-80639141 Msa0379480:CDS 35.0%
AAATCACTTAACGATGGAGA+AGG + chr3_1:80639254-80639273 None:intergenic 35.0%
TTCTCCATCGTTAAGTGATT+TGG - chr3_1:80639253-80639272 Msa0379480:CDS 35.0%
GAACAAGAGAATGTTCTCCT+AGG - chr3_1:80637322-80637341 Msa0379480:three_prime_UTR 40.0%
AACAAGAATCCCAGTTTGCA+TGG + chr3_1:80637390-80637409 None:intergenic 40.0%
! CAAGAGTGCAAAGAACAAAG+AGG - chr3_1:80637564-80637583 Msa0379480:CDS 40.0%
!!! GCATTTTTTGGGTGAGCTTT+AGG - chr3_1:80638104-80638123 Msa0379480:CDS 40.0%
GGTGACCAAGCTTCTATTAT+TGG - chr3_1:80638533-80638552 Msa0379480:intron 40.0%
GACCAAGCTTCTATTATTGG+AGG - chr3_1:80638536-80638555 Msa0379480:intron 40.0%
CTCCTCCAATAATAGAAGCT+TGG + chr3_1:80638541-80638560 None:intergenic 40.0%
CAACATTTACAGTCTATGGG+GGG - chr3_1:80638587-80638606 Msa0379480:intron 40.0%
GTGAAGAATTCAGCAAAAGG+TGG + chr3_1:80638662-80638681 None:intergenic 40.0%
CAACAACAACAACGTCACAA+TGG - chr3_1:80638715-80638734 Msa0379480:intron 40.0%
GGCAGACATTGAAGTTACAA+TGG - chr3_1:80638775-80638794 Msa0379480:intron 40.0%
! GTTGATAAGCCAGTTCTTGT+TGG + chr3_1:80639153-80639172 None:intergenic 40.0%
TGAGAATATTAGAGGGGGTA+AGG - chr3_1:80639300-80639319 Msa0379480:CDS 40.0%
TCTTCTGATAGCAGCAATTG+TGG - chr3_1:80639361-80639380 Msa0379480:CDS 40.0%
GAACAAGAGAATGTTCTCCT+AGG - chr3_1:80637322-80637341 Msa0379480:three_prime_UTR 40.0%
AACAAGAATCCCAGTTTGCA+TGG + chr3_1:80637390-80637409 None:intergenic 40.0%
! CAAGAGTGCAAAGAACAAAG+AGG - chr3_1:80637564-80637583 Msa0379480:CDS 40.0%
!!! GCATTTTTTGGGTGAGCTTT+AGG - chr3_1:80638104-80638123 Msa0379480:CDS 40.0%
GGTGACCAAGCTTCTATTAT+TGG - chr3_1:80638533-80638552 Msa0379480:intron 40.0%
GACCAAGCTTCTATTATTGG+AGG - chr3_1:80638536-80638555 Msa0379480:intron 40.0%
CTCCTCCAATAATAGAAGCT+TGG + chr3_1:80638541-80638560 None:intergenic 40.0%
CAACATTTACAGTCTATGGG+GGG - chr3_1:80638587-80638606 Msa0379480:intron 40.0%
GTGAAGAATTCAGCAAAAGG+TGG + chr3_1:80638662-80638681 None:intergenic 40.0%
CAACAACAACAACGTCACAA+TGG - chr3_1:80638715-80638734 Msa0379480:intron 40.0%
GGCAGACATTGAAGTTACAA+TGG - chr3_1:80638775-80638794 Msa0379480:intron 40.0%
! GTTGATAAGCCAGTTCTTGT+TGG + chr3_1:80639153-80639172 None:intergenic 40.0%
TGAGAATATTAGAGGGGGTA+AGG - chr3_1:80639300-80639319 Msa0379480:CDS 40.0%
TCTTCTGATAGCAGCAATTG+TGG - chr3_1:80639361-80639380 Msa0379480:CDS 40.0%
TGATCAACGGTGCAGATTTC+AGG + chr3_1:80637454-80637473 None:intergenic 45.0%
!! GTTGCACTTGTTGTGTACTG+AGG + chr3_1:80638689-80638708 None:intergenic 45.0%
!! CAGCCCATTGTTTCTGTTCT+TGG + chr3_1:80638754-80638773 None:intergenic 45.0%
!! AGAACAGAAACAATGGGCTG+TGG - chr3_1:80638754-80638773 Msa0379480:intron 45.0%
TGTTACCACGGTCGATGATA+TGG - chr3_1:80638904-80638923 Msa0379480:intron 45.0%
AAGAACCATATCATCGACCG+TGG + chr3_1:80638912-80638931 None:intergenic 45.0%
GGGTATGAATTGATTGGAGC+AGG - chr3_1:80639057-80639076 Msa0379480:CDS 45.0%
GAATTGATTGGAGCAGGTAG+AGG - chr3_1:80639063-80639082 Msa0379480:CDS 45.0%
TGATCAACGGTGCAGATTTC+AGG + chr3_1:80637454-80637473 None:intergenic 45.0%
!! GTTGCACTTGTTGTGTACTG+AGG + chr3_1:80638689-80638708 None:intergenic 45.0%
!! CAGCCCATTGTTTCTGTTCT+TGG + chr3_1:80638754-80638773 None:intergenic 45.0%
!! AGAACAGAAACAATGGGCTG+TGG - chr3_1:80638754-80638773 Msa0379480:intron 45.0%
TGTTACCACGGTCGATGATA+TGG - chr3_1:80638904-80638923 Msa0379480:intron 45.0%
AAGAACCATATCATCGACCG+TGG + chr3_1:80638912-80638931 None:intergenic 45.0%
GGGTATGAATTGATTGGAGC+AGG - chr3_1:80639057-80639076 Msa0379480:CDS 45.0%
GAATTGATTGGAGCAGGTAG+AGG - chr3_1:80639063-80639082 Msa0379480:CDS 45.0%
!!! TTTTTAAATTTACTTAATTA+TGG - chr3_1:80637833-80637852 Msa0379480:CDS 5.0%
!!! TTTTTAAATTTACTTAATTA+TGG - chr3_1:80637833-80637852 Msa0379480:CDS 5.0%
AACGGTGCAGATTTCAGGAG+AGG + chr3_1:80637449-80637468 None:intergenic 50.0%
GAAGGAGGAGTAGTGAAGGT+AGG + chr3_1:80637490-80637509 None:intergenic 50.0%
GGAAGAAGGAGGAGTAGTGA+AGG + chr3_1:80637494-80637513 None:intergenic 50.0%
! TGCAGTTGCTGTTGCTTCCA+CGG + chr3_1:80637518-80637537 None:intergenic 50.0%
CAACAGCAACTGCAACGTGT+AGG - chr3_1:80637524-80637543 Msa0379480:exon 50.0%
TTGATTGGAGCAGGTAGAGG+AGG - chr3_1:80639066-80639085 Msa0379480:CDS 50.0%
TGATTGGAGCAGGTAGAGGA+GGG - chr3_1:80639067-80639086 Msa0379480:CDS 50.0%
AAGGACGGTCCAACAAGAAC+TGG - chr3_1:80639141-80639160 Msa0379480:CDS 50.0%
AACGGTGCAGATTTCAGGAG+AGG + chr3_1:80637449-80637468 None:intergenic 50.0%
GAAGGAGGAGTAGTGAAGGT+AGG + chr3_1:80637490-80637509 None:intergenic 50.0%
GGAAGAAGGAGGAGTAGTGA+AGG + chr3_1:80637494-80637513 None:intergenic 50.0%
! TGCAGTTGCTGTTGCTTCCA+CGG + chr3_1:80637518-80637537 None:intergenic 50.0%
CAACAGCAACTGCAACGTGT+AGG - chr3_1:80637524-80637543 Msa0379480:exon 50.0%
TTGATTGGAGCAGGTAGAGG+AGG - chr3_1:80639066-80639085 Msa0379480:CDS 50.0%
TGATTGGAGCAGGTAGAGGA+GGG - chr3_1:80639067-80639086 Msa0379480:CDS 50.0%
AAGGACGGTCCAACAAGAAC+TGG - chr3_1:80639141-80639160 Msa0379480:CDS 50.0%
TACTCCTCCTTCTTCCACCG+TGG - chr3_1:80637498-80637517 Msa0379480:three_prime_UTR 55.0%
GTTGCTTCCACGGTGGAAGA+AGG + chr3_1:80637508-80637527 None:intergenic 55.0%
! AGTTGCTGTTGCTTCCACGG+TGG + chr3_1:80637515-80637534 None:intergenic 55.0%
GATTGGAGCAGGTAGAGGAG+GGG - chr3_1:80639068-80639087 Msa0379480:CDS 55.0%
GGGGAGTCAGCTGAATAGTG+TGG - chr3_1:80639087-80639106 Msa0379480:CDS 55.0%
TACTCCTCCTTCTTCCACCG+TGG - chr3_1:80637498-80637517 Msa0379480:three_prime_UTR 55.0%
GTTGCTTCCACGGTGGAAGA+AGG + chr3_1:80637508-80637527 None:intergenic 55.0%
! AGTTGCTGTTGCTTCCACGG+TGG + chr3_1:80637515-80637534 None:intergenic 55.0%
GATTGGAGCAGGTAGAGGAG+GGG - chr3_1:80639068-80639087 Msa0379480:CDS 55.0%
GGGGAGTCAGCTGAATAGTG+TGG - chr3_1:80639087-80639106 Msa0379480:CDS 55.0%
GCTTCCACGGTGGAAGAAGG+AGG + chr3_1:80637505-80637524 None:intergenic 60.0%
GCTTCCACGGTGGAAGAAGG+AGG + chr3_1:80637505-80637524 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 80637214 80639492 80637214 ID=Msa0379480;Name=Msa0379480
chr3_1 mRNA 80637214 80639492 80637214 ID=Msa0379480-mRNA-1;Parent=Msa0379480;Name=Msa0379480-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.66|1|1|1|3|312|334
chr3_1 exon 80637214 80637627 80637214 ID=Msa0379480-mRNA-1:exon:20175;Parent=Msa0379480-mRNA-1
chr3_1 exon 80637757 80638173 80637757 ID=Msa0379480-mRNA-1:exon:20174;Parent=Msa0379480-mRNA-1
chr3_1 exon 80639007 80639492 80639007 ID=Msa0379480-mRNA-1:exon:20173;Parent=Msa0379480-mRNA-1
chr3_1 CDS 80639007 80639492 80639007 ID=Msa0379480-mRNA-1:cds;Parent=Msa0379480-mRNA-1
chr3_1 CDS 80637757 80638173 80637757 ID=Msa0379480-mRNA-1:cds;Parent=Msa0379480-mRNA-1
chr3_1 CDS 80637526 80637627 80637526 ID=Msa0379480-mRNA-1:cds;Parent=Msa0379480-mRNA-1
chr3_1 three_prime_UTR 80637214 80637525 80637214 ID=Msa0379480-mRNA-1:three_prime_utr;Parent=Msa0379480-mRNA-1
Gene Sequence

>Msa0379480

ATGGCTCTTGAAACTGTGGTTTTCCCACAACAAGATCCATTCACATATAGTTACAAGGACAATTACTTCAACTCTTTGAACAATGACTATGATCATCTTCATGCGGAAGAACAAGAGAATGTTCTCCTAGGAATCATCAACAACAATAACACCAACGTAGAACAACAAAATCTCCATGCAAACTGGGATTCTTGTTCTGTTAAAGATCATCAATGGGAATATTCACACTCTTCCTCTCCTGAAATCTGCACCGTTGATCAAACTATCACAGCACCTACCTTCACTACTCCTCCTTCTTCCACCGTGGAAGCAACAGCAACTGCAACGTGTAGGAGAAAGCGACGTCGTATCAAGAGTGCAAAGAACAAAGAGGAGATTGAAAATCAAAGGATGACTCATATTACTGTTGAACGCAATCGAAGAAAACAAATGAATGAGTACTTGAATGTTCTTCGGTCTTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCTTCTATTATTGGAGGAGCAATAAACTTTGTGAAGGAGTTAGAACAACATTTACAGTCTATGGGGGGCCAAAAGAAAACGAAAGAACCAAACGAGAACATAGGCTTAAATAATGGACCACCTTTTGCTGAATTCTTCACTTTTCCTCAGTACACAACAAGTGCAACTCAGAACAACAACAACAACGTCACAATGGAACAACACAATTACCAAGAACAGAAACAATGGGCTGTGGCAGACATTGAAGTTACAATGGTAGATAGTCATGCCAACATGAAAATTCTATCCAAGAAAAAACCAGGACAACTTATGAAGATTGTTGTTGGGTTACAAAATCTTAGGCTTACCATTCTTCATCTTAATGTTACCACGGTCGATGATATGGTTCTTTACTCAGTTAGTGTCAAGGTAGAGGAGGGGAGTCAGCTGAATAGTGTGGATGAAATTGCGGCTGCTGTGAATCAACTATTAAGGACGGTCCAACAAGAACTGGCTTATCAACTAAATTGA

Protein sequence

>Msa0379480

MALETVVFPQQDPFTYSYKDNYFNSLNNDYDHLHAEEQENVLLGIINNNNTNVEQQNLHANWDSCSVKDHQWEYSHSSSPEICTVDQTITAPTFTTPPSSTVEATATATCRRKRRRIKSAKNKEEIENQRMTHITVERNRRKQMNEYLNVLRSLMPSSYVQRGDQASIIGGAINFVKELEQHLQSMGGQKKTKEPNENIGLNNGPPFAEFFTFPQYTTSATQNNNNNVTMEQHNYQEQKQWAVADIEVTMVDSHANMKILSKKKPGQLMKIVVGLQNLRLTILHLNVTTVDDMVLYSVSVKVEEGSQLNSVDEIAAAVNQLLRTVQQELAYQLN*