Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613810 | XP_003608382.2 | 69.665 | 478 | 110 | 5 | 6 | 478 | 70 | 517 | 0.0 | 603 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027390 | Msa0613810 | 0.805804 | 1.118256e-49 | -8.615850e-47 |
| Msa0031180 | Msa0613810 | 0.808175 | 3.523872e-50 | -8.615850e-47 |
| Msa0037160 | Msa0613810 | 0.803930 | 2.755344e-49 | -8.615850e-47 |
| Msa0040450 | Msa0613810 | 0.800145 | 1.653417e-48 | -8.615850e-47 |
| Msa0043500 | Msa0613810 | 0.802648 | 5.078193e-49 | -8.615850e-47 |
| Msa0054820 | Msa0613810 | 0.816593 | 5.104643e-52 | -8.615850e-47 |
| Msa0056450 | Msa0613810 | 0.800103 | 1.686086e-48 | -8.615850e-47 |
| Msa0078480 | Msa0613810 | 0.802999 | 4.296845e-49 | -8.615850e-47 |
| Msa0100160 | Msa0613810 | 0.808110 | 3.637968e-50 | -8.615850e-47 |
| Msa0613810 | Msa0613860 | 0.837257 | 5.783102e-57 | -8.615850e-47 |
| Msa0613810 | Msa0613870 | 0.832262 | 1.044828e-55 | -8.615850e-47 |
| Msa0613810 | Msa0620620 | 0.802895 | 4.515016e-49 | -8.615850e-47 |
| Msa0613810 | Msa0638440 | 0.810525 | 1.103896e-50 | -8.615850e-47 |
| Msa0613810 | Msa0693380 | 0.811719 | 6.080939e-51 | -8.615850e-47 |
| Msa0613810 | Msa0737570 | 0.807465 | 4.987543e-50 | -8.615850e-47 |
| Msa0613810 | Msa0751260 | 0.813275 | 2.779473e-51 | -8.615850e-47 |
| Msa0613810 | Msa0756530 | 0.824679 | 7.083759e-54 | -8.615850e-47 |
| Msa0613810 | Msa0800700 | 0.802526 | 5.380428e-49 | -8.615850e-47 |
| Msa0613810 | Msa0805430 | 0.808615 | 2.839295e-50 | -8.615850e-47 |
| Msa0613810 | Msa0856920 | 0.803531 | 3.334681e-49 | -8.615850e-47 |
| Msa0613810 | Msa0900620 | 0.835381 | 1.734876e-56 | -8.615850e-47 |
| Msa0613810 | Msa0906690 | 0.805326 | 1.409269e-49 | -8.615850e-47 |
| Msa0613810 | Msa0939000 | 0.824425 | 8.126890e-54 | -8.615850e-47 |
| Msa0613810 | Msa0952120 | 0.805428 | 1.341049e-49 | -8.615850e-47 |
| Msa0613810 | Msa0965850 | 0.805502 | 1.294497e-49 | -8.615850e-47 |
| Msa0613810 | Msa0975940 | 0.800896 | 1.162232e-48 | -8.615850e-47 |
| Msa0613810 | Msa1004840 | 0.825912 | 3.619439e-54 | -8.615850e-47 |
| Msa0613810 | Msa1038080 | 0.815480 | 9.045635e-52 | -8.615850e-47 |
| Msa0613810 | Msa1082500 | 0.821372 | 4.180913e-53 | -8.615850e-47 |
| Msa0613810 | Msa1087980 | 0.804017 | 2.643605e-49 | -8.615850e-47 |
| Msa0613810 | Msa1165740 | 0.803115 | 4.067042e-49 | -8.615850e-47 |
| Msa0613810 | Msa1205370 | 0.806478 | 8.067356e-50 | -8.615850e-47 |
| Msa0613810 | Msa1243870 | 0.801089 | 1.061162e-48 | -8.615850e-47 |
| Msa0613810 | Msa1250290 | 0.807685 | 4.480079e-50 | -8.615850e-47 |
| Msa0613810 | Msa1297290 | 0.801805 | 7.570991e-49 | -8.615850e-47 |
| Msa0613810 | Msa1366600 | 0.806657 | 7.395894e-50 | -8.615850e-47 |
| Msa0613810 | Msa1385000 | 0.802746 | 4.846208e-49 | -8.615850e-47 |
| Msa0613810 | Msa1446780 | 0.808436 | 3.099864e-50 | -8.615850e-47 |
| Msa0160670 | Msa0613810 | 0.829284 | 5.610817e-55 | -8.615850e-47 |
| Msa0165300 | Msa0613810 | 0.811279 | 7.579136e-51 | -8.615850e-47 |
| Msa0181230 | Msa0613810 | 0.808047 | 3.751592e-50 | -8.615850e-47 |
| Msa0225220 | Msa0613810 | 0.812389 | 4.344278e-51 | -8.615850e-47 |
| Msa0417880 | Msa0613810 | 0.820581 | 6.359043e-53 | -8.615850e-47 |
| Msa0422280 | Msa0613810 | 0.803465 | 3.440764e-49 | -8.615850e-47 |
| Msa0428050 | Msa0613810 | 0.810553 | 1.088521e-50 | -8.615850e-47 |
| Msa0451070 | Msa0613810 | 0.804463 | 2.134628e-49 | -8.615850e-47 |
| Msa0468800 | Msa0613810 | 0.822288 | 2.566349e-53 | -8.615850e-47 |
| Msa0474390 | Msa0613810 | 0.814754 | 1.311181e-51 | -8.615850e-47 |
| Msa0239800 | Msa0613810 | 0.802817 | 4.685435e-49 | -8.615850e-47 |
| Msa0253290 | Msa0613810 | 0.808685 | 2.742462e-50 | -8.615850e-47 |
| Msa0276920 | Msa0613810 | 0.821402 | 4.114630e-53 | -8.615850e-47 |
| Msa0317510 | Msa0613810 | 0.803783 | 2.955943e-49 | -8.615850e-47 |
| Msa0317730 | Msa0613810 | 0.807486 | 4.938602e-50 | -8.615850e-47 |
| Msa0342010 | Msa0613810 | 0.840153 | 1.031866e-57 | -8.615850e-47 |
| Msa0358890 | Msa0613810 | 0.836306 | 1.010805e-56 | -8.615850e-47 |
| Msa0484780 | Msa0613810 | 0.819458 | 1.149160e-52 | -8.615850e-47 |
| Msa0503060 | Msa0613810 | 0.804114 | 2.523435e-49 | -8.615850e-47 |
| Msa0507680 | Msa0613810 | 0.803905 | 2.788730e-49 | -8.615850e-47 |
| Msa0512870 | Msa0613810 | 0.808419 | 3.125988e-50 | -8.615850e-47 |
| Msa0574390 | Msa0613810 | 0.820523 | 6.559351e-53 | -8.615850e-47 |
| Msa0576680 | Msa0613810 | 0.815354 | 9.652613e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613810 | MtrunA17_Chr4g0049651 | 69.665 | 478 | 110 | 5 | 6 | 478 | 70 | 517 | 0.0 | 603 |
| Msa0613810 | MtrunA17_Chr4g0049671 | 52.610 | 498 | 153 | 15 | 6 | 475 | 61 | 503 | 1.88e-145 | 431 |
| Msa0613810 | MtrunA17_Chr4g0049671 | 54.545 | 319 | 98 | 9 | 109 | 420 | 275 | 553 | 1.07e-85 | 276 |
| Msa0613810 | MtrunA17_Chr4g0049671 | 53.416 | 161 | 50 | 5 | 92 | 249 | 383 | 521 | 9.86e-35 | 137 |
| Msa0613810 | MtrunA17_Chr4g0049681 | 54.012 | 324 | 89 | 6 | 159 | 479 | 4 | 270 | 2.39e-102 | 307 |
| Msa0613810 | MtrunA17_Chr4g0049681 | 54.054 | 185 | 59 | 3 | 92 | 276 | 95 | 253 | 2.02e-48 | 167 |
| Msa0613810 | MtrunA17_Chr4g0049701 | 58.824 | 255 | 80 | 4 | 6 | 259 | 67 | 297 | 7.35e-98 | 298 |
| Msa0613810 | MtrunA17_Chr4g0049701 | 58.219 | 146 | 54 | 3 | 231 | 372 | 137 | 279 | 9.09e-42 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613810 | AT1G69700.1 | 39.130 | 92 | 49 | 3 | 6 | 90 | 74 | 165 | 8.59e-11 | 61.6 |
Find 100 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCCGTCATGCCTAAAAT+TGG | 0.216519 | 4_2:-62721200 | Msa0613810:CDS |
| ACAGACACTACATATTAATT+TGG | 0.222530 | 4_2:+62719902 | None:intergenic |
| CTCTGTGTTTCCTCCCATTA+AGG | 0.223084 | 4_2:+62720174 | None:intergenic |
| TAGCTGTTTCACCTCTTCTT+TGG | 0.246764 | 4_2:+62720085 | None:intergenic |
| GACTTGAATTCCCACCTTAA+TGG | 0.248092 | 4_2:-62720188 | Msa0613810:CDS |
| TTATATCTTTGTGCTCAATT+TGG | 0.251358 | 4_2:+62722338 | None:intergenic |
| AATGTGGTCTCTCACTTAAA+TGG | 0.261979 | 4_2:-62719855 | Msa0613810:CDS |
| CAAGGAAAGATGAAACTATA+TGG | 0.292023 | 4_2:-62721501 | Msa0613810:CDS |
| ATCCTTACTTGCTTAGTTGC+AGG | 0.301812 | 4_2:+62720723 | None:intergenic |
| TGTGACTACTTGCGGTTTCA+TGG | 0.304620 | 4_2:+62722882 | None:intergenic |
| GCACAAAGATATAAAAGATT+TGG | 0.315985 | 4_2:-62722329 | Msa0613810:CDS |
| ACTTGAATTCCCACCTTAAT+GGG | 0.327925 | 4_2:-62720187 | Msa0613810:CDS |
| GAACAAAGGCATCAAAGATT+TGG | 0.329175 | 4_2:-62720769 | Msa0613810:CDS |
| CTAAATTCTAATGTCAATAA+TGG | 0.330392 | 4_2:-62720047 | Msa0613810:CDS |
| GTTAATCTCTGCTGTTCCTT+TGG | 0.330433 | 4_2:+62721142 | None:intergenic |
| CACATAGCTGTTTACCTTGT+TGG | 0.332650 | 4_2:+62722747 | None:intergenic |
| TGATGCCTTTGTTCTCTGTT+TGG | 0.337446 | 4_2:+62720778 | None:intergenic |
| AGAAGCGACAAATGAAATTA+TGG | 0.343558 | 4_2:-62722536 | Msa0613810:CDS |
| TCATTTGTCGCTTCTGCATC+AGG | 0.351305 | 4_2:+62722544 | None:intergenic |
| TTGATAGATTAAATAACCTT+AGG | 0.356567 | 4_2:-62719800 | Msa0613810:CDS |
| TTAAGCTAATGATCATCTTC+TGG | 0.363647 | 4_2:-62722960 | Msa0613810:CDS |
| GTTGGCAATGAGTTTCTCTA+AGG | 0.364553 | 4_2:+62722765 | None:intergenic |
| CTTAAATGGGAAGATGCATT+TGG | 0.368212 | 4_2:-62719841 | Msa0613810:CDS |
| TTTGACTTGCCACAATATTA+GGG | 0.397124 | 4_2:+62720348 | None:intergenic |
| ACAGCAGAGAGCGGCAAAGC+TGG | 0.420496 | 4_2:-62720293 | Msa0613810:CDS |
| GAGTTTCTTGTGCAGACAAA+TGG | 0.437104 | 4_2:-62720810 | Msa0613810:intron |
| TGTGTAGAATTAGAACTTTG+AGG | 0.444482 | 4_2:+62720260 | None:intergenic |
| GAGAAATATATGAAAGAGAA+TGG | 0.445755 | 4_2:-62722796 | Msa0613810:CDS |
| TGGCTCATCATACCGGACTT+TGG | 0.448937 | 4_2:-62722940 | Msa0613810:CDS |
| ATGTGGTCTCTCACTTAAAT+GGG | 0.458643 | 4_2:-62719854 | Msa0613810:CDS |
| TGAATGAAGTCTTACTTGCT+TGG | 0.462071 | 4_2:+62722276 | None:intergenic |
| TTGGAATTATGCATCCCAAC+AGG | 0.462818 | 4_2:+62719921 | None:intergenic |
| AGAACCTGTGTGAGCCTGTT+GGG | 0.465854 | 4_2:-62719935 | Msa0613810:CDS |
| GTGGACTTGTGCTTTATGTT+CGG | 0.467459 | 4_2:-62720231 | Msa0613810:CDS |
| TCATTACCATGCGTGACATC+AGG | 0.468355 | 4_2:-62723002 | None:intergenic |
| GAGAAGATATTCTTAACAAA+GGG | 0.471483 | 4_2:-62720025 | Msa0613810:CDS |
| TATTCTTAACAAAGGGTTGA+AGG | 0.474250 | 4_2:-62720018 | Msa0613810:CDS |
| TTCCCGTCATGCCTAAAATT+GGG | 0.474683 | 4_2:-62721199 | Msa0613810:CDS |
| AGTCTTACTTGCTTGGTAGC+AGG | 0.482500 | 4_2:+62722283 | None:intergenic |
| CTTGATCTAGTGCAGACAAA+TGG | 0.488996 | 4_2:-62722370 | Msa0613810:intron |
| TAATATTGTGGCAAGTCAAA+AGG | 0.491507 | 4_2:-62720345 | Msa0613810:CDS |
| ACCTACACTACATAAGCAAA+AGG | 0.492485 | 4_2:-62720955 | Msa0613810:CDS |
| CATGGAGGTTAAACAACTAC+TGG | 0.497837 | 4_2:-62722861 | Msa0613810:CDS |
| ATGATCATTAGCTTAATGTA+TGG | 0.499044 | 4_2:+62722967 | None:intergenic |
| AACCTCCATGTGACTACTTG+CGG | 0.500472 | 4_2:+62722874 | None:intergenic |
| TAAGAAGCTCGTCCAAAGTC+CGG | 0.501414 | 4_2:+62722928 | None:intergenic |
| TGATAGATTAAATAACCTTA+GGG | 0.501735 | 4_2:-62719799 | Msa0613810:CDS |
| GTGGACGTGTGCTTTATGTT+TGG | 0.503390 | 4_2:-62721066 | Msa0613810:CDS |
| AAGGAAAGATGAAACTATAT+GGG | 0.505487 | 4_2:-62721500 | Msa0613810:CDS |
| TAAACAACTACTGGAGGAAG+TGG | 0.507612 | 4_2:-62722852 | Msa0613810:CDS |
| TAGCATTTCTTTATTATCAG+TGG | 0.509477 | 4_2:+62722513 | None:intergenic |
| CATCTTCTGGCTCATCATAC+CGG | 0.514317 | 4_2:-62722947 | Msa0613810:CDS |
| CAAAGATATAAAAGATTTGG+AGG | 0.519689 | 4_2:-62722326 | Msa0613810:CDS |
| TGTGTTTCCTCCCATTAAGG+TGG | 0.519720 | 4_2:+62720177 | None:intergenic |
| GGAGAAGATATTCTTAACAA+AGG | 0.524588 | 4_2:-62720026 | Msa0613810:CDS |
| GTTGAAGGGAACAGTGATGA+TGG | 0.524742 | 4_2:-62720003 | Msa0613810:CDS |
| TCAGCCATGGTGGAAACTAA+AGG | 0.528227 | 4_2:-62720317 | Msa0613810:CDS |
| ATTCTTAACAAAGGGTTGAA+GGG | 0.533798 | 4_2:-62720017 | Msa0613810:CDS |
| GTGACATCAGGTTTCACCTC+TGG | 0.539831 | 4_2:-62722990 | Msa0613810:CDS |
| CAAAGGCATCAAAGATTTGG+AGG | 0.542142 | 4_2:-62720766 | Msa0613810:CDS |
| GTGTTTCCTCCCATTAAGGT+GGG | 0.543534 | 4_2:+62720178 | None:intergenic |
| AACAGTGATGATGGATGATA+AGG | 0.544536 | 4_2:-62719994 | Msa0613810:CDS |
| CCACATTGGCCTCACAATGA+AGG | 0.550544 | 4_2:+62719871 | None:intergenic |
| AGAAGGAAGTGCAGAAAGAG+TGG | 0.552790 | 4_2:-62721085 | Msa0613810:CDS |
| AAGCAATGCAAGTGTCCCTA+AGG | 0.556180 | 4_2:+62719784 | None:intergenic |
| TAGTCAGAGTTCTACACAGA+AGG | 0.572374 | 4_2:-62721102 | Msa0613810:CDS |
| TGATAATAAAGAAATAGTAA+AGG | 0.578556 | 4_2:-62720901 | Msa0613810:intron |
| GCAGAGAGCGGCAAAGCTGG+TGG | 0.578659 | 4_2:-62720290 | Msa0613810:CDS |
| AAAACTTTGAATTGTCATCT+CGG | 0.579057 | 4_2:-62721026 | Msa0613810:CDS |
| TGATAATAAAGAAATGCTAA+AGG | 0.581964 | 4_2:-62722509 | Msa0613810:intron |
| ACAGCAGAGATTAACAAAGC+TGG | 0.583162 | 4_2:-62721134 | Msa0613810:CDS |
| GATAAACTACCCTAATATTG+TGG | 0.583591 | 4_2:-62720357 | Msa0613810:CDS |
| TGTTCCTTTGGTTTCCACTG+TGG | 0.597327 | 4_2:+62721154 | None:intergenic |
| GAGCGGCAAAGCTGGTGGCA+AGG | 0.601488 | 4_2:-62720285 | Msa0613810:CDS |
| TGTTCCTTTAGTTTCCACCA+TGG | 0.603504 | 4_2:+62720313 | None:intergenic |
| TAATGTTGTCCTTCATTGTG+AGG | 0.605887 | 4_2:-62719880 | Msa0613810:CDS |
| AAATTATCAGTCCAAAGAAG+AGG | 0.609547 | 4_2:-62720096 | Msa0613810:CDS |
| CTAATTCTACACAGAAAGAG+TGG | 0.617607 | 4_2:-62720250 | Msa0613810:CDS |
| AGAGAAACTCATTGCCAACA+AGG | 0.624521 | 4_2:-62722761 | Msa0613810:intron |
| TCAAAAGGCATCATCAGCCA+TGG | 0.625866 | 4_2:-62720330 | Msa0613810:CDS |
| GATTAACAAAGCTGGTGGAG+AGG | 0.629202 | 4_2:-62721126 | Msa0613810:CDS |
| GCAGAGATTAACAAAGCTGG+TGG | 0.630126 | 4_2:-62721131 | Msa0613810:CDS |
| AAAGGCATCATCAGCCATGG+TGG | 0.632219 | 4_2:-62720327 | Msa0613810:CDS |
| AAGAACCTGTGTGAGCCTGT+TGG | 0.634344 | 4_2:-62719936 | Msa0613810:CDS |
| CCTTCATTGTGAGGCCAATG+TGG | 0.637198 | 4_2:-62719871 | Msa0613810:CDS |
| TGAAACCGCAAGTAGTCACA+TGG | 0.639727 | 4_2:-62722879 | Msa0613810:CDS |
| TATTGTAGAACACAATGTGT+AGG | 0.642645 | 4_2:-62722567 | Msa0613810:intron |
| ACTAAAGGAACAGCAGAGAG+CGG | 0.648424 | 4_2:-62720302 | Msa0613810:CDS |
| TGAATTCCCACCTTAATGGG+AGG | 0.653071 | 4_2:-62720184 | Msa0613810:CDS |
| GAAACTATATGGGAAACAAG+TGG | 0.653519 | 4_2:-62721490 | Msa0613810:CDS |
| ACTTTGAATTGTCATCTCGG+TGG | 0.657302 | 4_2:-62721023 | Msa0613810:CDS |
| GGAGGTTAAACAACTACTGG+AGG | 0.657523 | 4_2:-62722858 | Msa0613810:CDS |
| GTGAAACCTGATGTCACGCA+TGG | 0.661268 | 4_2:+62722996 | None:intergenic |
| TCAGCCACAGTGGAAACCAA+AGG | 0.672852 | 4_2:-62721158 | Msa0613810:CDS |
| GCATCCCAACAGGCTCACAC+AGG | 0.678013 | 4_2:+62719931 | None:intergenic |
| AAATGCGTCATCAGCCACAG+TGG | 0.678240 | 4_2:-62721168 | Msa0613810:CDS |
| AGACTCCAAACAGAGAACAA+AGG | 0.692912 | 4_2:-62720783 | Msa0613810:CDS |
| TTAGCTTAATGTATGGCCAG+AGG | 0.696948 | 4_2:+62722974 | None:intergenic |
| ATTTAAGTGAGAGACCACAT+TGG | 0.701361 | 4_2:+62719857 | None:intergenic |
| AACCGCAAGTAGTCACATGG+AGG | 0.759885 | 4_2:-62722876 | Msa0613810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATAATAAAGAAATAGTAA+AGG | - | chr4_2:62721875-62721894 | Msa0613810:intron | 15.0% |
| !! | TACAATTTAAATTTGAACTT+GGG | + | chr4_2:62722290-62722309 | None:intergenic | 15.0% |
| !!! | GGACATTTTTATTTTATGTT+GGG | + | chr4_2:62720087-62720106 | None:intergenic | 20.0% |
| !!! | TGGACATTTTTATTTTATGT+TGG | + | chr4_2:62720088-62720107 | None:intergenic | 20.0% |
| !! | TGATAATAAAGAAATGCTAA+AGG | - | chr4_2:62720267-62720286 | Msa0613810:CDS | 20.0% |
| !! | CTAATCATTAAGTTTCTATT+TGG | + | chr4_2:62720534-62720553 | None:intergenic | 20.0% |
| !! | CAAATAGAAACTTAATGATT+AGG | - | chr4_2:62720532-62720551 | Msa0613810:intron | 20.0% |
| !!! | CTCAAATAAAAAGTACAATT+AGG | + | chr4_2:62720637-62720656 | None:intergenic | 20.0% |
| !!! | CTAATTGTACTTTTTATTTG+AGG | - | chr4_2:62720635-62720654 | Msa0613810:intron | 20.0% |
| !! | TAAAAAATTGTATTAGAGGA+GGG | + | chr4_2:62720920-62720939 | None:intergenic | 20.0% |
| !! | GAACTAAAAAATTGTATTAG+AGG | + | chr4_2:62720924-62720943 | None:intergenic | 20.0% |
| !!! | ACATTTTTAACAAAGAACTA+TGG | + | chr4_2:62721470-62721489 | None:intergenic | 20.0% |
| !! | TGTATTCTTCGAATTATATT+TGG | - | chr4_2:62721500-62721519 | Msa0613810:CDS | 20.0% |
| !!! | ACCTAATATTGATTAAACAT+GGG | + | chr4_2:62722164-62722183 | None:intergenic | 20.0% |
| !!! | AACCTAATATTGATTAAACA+TGG | + | chr4_2:62722165-62722184 | None:intergenic | 20.0% |
| !! | ATGTTTAATCAATATTAGGT+TGG | - | chr4_2:62722164-62722183 | Msa0613810:intron | 20.0% |
| !! | CTACAATTTAAATTTGAACT+TGG | + | chr4_2:62722291-62722310 | None:intergenic | 20.0% |
| !! | AAATTTAAATTGTAGATTCG+AGG | - | chr4_2:62722296-62722315 | Msa0613810:CDS | 20.0% |
| !! | CTAAATTCTAATGTCAATAA+TGG | - | chr4_2:62722729-62722748 | Msa0613810:intron | 20.0% |
| !! | TTGATAGATTAAATAACCTT+AGG | - | chr4_2:62722976-62722995 | Msa0613810:CDS | 20.0% |
| !! | TGATAGATTAAATAACCTTA+GGG | - | chr4_2:62722977-62722996 | Msa0613810:CDS | 20.0% |
| !! | ATGATCATTAGCTTAATGTA+TGG | + | chr4_2:62719812-62719831 | None:intergenic | 25.0% |
| ! | GAGAAATATATGAAAGAGAA+TGG | - | chr4_2:62719980-62719999 | Msa0613810:CDS | 25.0% |
| !! | AACTCTAGAAGAATTCTATA+GGG | - | chr4_2:62720116-62720135 | Msa0613810:CDS | 25.0% |
| ! | TATAAAAACATCCACATACT+TGG | + | chr4_2:62720144-62720163 | None:intergenic | 25.0% |
| ! | TAGCATTTCTTTATTATCAG+TGG | + | chr4_2:62720266-62720285 | None:intergenic | 25.0% |
| !! | AAATGCTAAAGGTAAAGTTT+TGG | - | chr4_2:62720278-62720297 | Msa0613810:CDS | 25.0% |
| ! | TTATATCTTTGTGCTCAATT+TGG | + | chr4_2:62720441-62720460 | None:intergenic | 25.0% |
| ! | GCACAAAGATATAAAAGATT+TGG | - | chr4_2:62720447-62720466 | Msa0613810:intron | 25.0% |
| ! | CAAAGATATAAAAGATTTGG+AGG | - | chr4_2:62720450-62720469 | Msa0613810:intron | 25.0% |
| !! | TGAGAAATCTTTCACATTTT+TGG | - | chr4_2:62720777-62720796 | Msa0613810:CDS | 25.0% |
| ! | CTAAAAAATTGTATTAGAGG+AGG | + | chr4_2:62720921-62720940 | None:intergenic | 25.0% |
| ! | AATATAAAACCCTCTTCATT+TGG | + | chr4_2:62720949-62720968 | None:intergenic | 25.0% |
| ! | AAGGAAAGATGAAACTATAT+GGG | - | chr4_2:62721276-62721295 | Msa0613810:intron | 25.0% |
| ! | TTCTTCGAATTATATTTGGT+TGG | - | chr4_2:62721504-62721523 | Msa0613810:CDS | 25.0% |
| ! | AAAACTTTGAATTGTCATCT+CGG | - | chr4_2:62721750-62721769 | Msa0613810:intron | 25.0% |
| !! | TTTATTTAGAGCACTTAATG+AGG | - | chr4_2:62721943-62721962 | Msa0613810:intron | 25.0% |
| !! | TTATTTAGAGCACTTAATGA+GGG | - | chr4_2:62721944-62721963 | Msa0613810:intron | 25.0% |
| !!! | AGGAATTTCTTTTTTCTCAA+TGG | + | chr4_2:62720476-62720495 | None:intergenic | 25.0% |
| ! | TCCCATGTTTAATCAATATT+AGG | - | chr4_2:62722160-62722179 | Msa0613810:intron | 25.0% |
| !!! | ATCTTTATTTTGACTGAATG+AGG | + | chr4_2:62722265-62722284 | None:intergenic | 25.0% |
| !! | ATATTTGTTGCCATTATTGT+TGG | - | chr4_2:62722391-62722410 | Msa0613810:intron | 25.0% |
| ! | GAGAAGATATTCTTAACAAA+GGG | - | chr4_2:62722751-62722770 | Msa0613810:intron | 25.0% |
| ! | ACAGACACTACATATTAATT+TGG | + | chr4_2:62722877-62722896 | None:intergenic | 25.0% |
| TTAAGCTAATGATCATCTTC+TGG | - | chr4_2:62719816-62719835 | Msa0613810:CDS | 30.0% | |
| !!! | CCAATTTTTTATGCAGCATA+AGG | + | chr4_2:62720056-62720075 | None:intergenic | 30.0% |
| CCTTATGCTGCATAAAAAAT+TGG | - | chr4_2:62720053-62720072 | Msa0613810:CDS | 30.0% | |
| ! | GAACTCTAGAAGAATTCTAT+AGG | - | chr4_2:62720115-62720134 | Msa0613810:CDS | 30.0% |
| TATTGTAGAACACAATGTGT+AGG | - | chr4_2:62720209-62720228 | Msa0613810:CDS | 30.0% | |
| AGAAGCGACAAATGAAATTA+TGG | - | chr4_2:62720240-62720259 | Msa0613810:CDS | 30.0% | |
| ACATTTAGTACTTAACGAGA+GGG | - | chr4_2:62720383-62720402 | Msa0613810:intron | 30.0% | |
| AAACTTAATGATTAGGCTTG+AGG | - | chr4_2:62720539-62720558 | Msa0613810:intron | 30.0% | |
| ! | ATTCTAAGAGGTTATTTGTG+TGG | - | chr4_2:62720563-62720582 | Msa0613810:intron | 30.0% |
| ATAGTCGATATCTCCTATTT+AGG | - | chr4_2:62720688-62720707 | Msa0613810:intron | 30.0% | |
| !! | ACACTGTGGAAGTTATTTTA+AGG | + | chr4_2:62721089-62721108 | None:intergenic | 30.0% |
| TAACTGTTTGTTCTCAATAG+TGG | - | chr4_2:62721207-62721226 | Msa0613810:intron | 30.0% | |
| AACTGTTTGTTCTCAATAGT+GGG | - | chr4_2:62721208-62721227 | Msa0613810:intron | 30.0% | |
| !! | CTTCTTTTCTTTTGATAGCA+AGG | - | chr4_2:62721257-62721276 | Msa0613810:intron | 30.0% |
| CAAGGAAAGATGAAACTATA+TGG | - | chr4_2:62721275-62721294 | Msa0613810:intron | 30.0% | |
| !! | TTCTGATGTTTGCTATTTGT+AGG | - | chr4_2:62721328-62721347 | Msa0613810:intron | 30.0% |
| ATGGTTATTACTGCATACAA+GGG | + | chr4_2:62721451-62721470 | None:intergenic | 30.0% | |
| TATGGTTATTACTGCATACA+AGG | + | chr4_2:62721452-62721471 | None:intergenic | 30.0% | |
| TTAGTCTCGATCCTAATATT+TGG | - | chr4_2:62721541-62721560 | Msa0613810:intron | 30.0% | |
| TCCTAATATTTGGATGTTGA+AGG | - | chr4_2:62721551-62721570 | Msa0613810:intron | 30.0% | |
| TCCTTCAACATCCAAATATT+AGG | + | chr4_2:62721555-62721574 | None:intergenic | 30.0% | |
| GTGTTGTGAAATTAATCTGA+TGG | - | chr4_2:62721915-62721934 | Msa0613810:intron | 30.0% | |
| TTATCTAGCACCAACAATAA+TGG | + | chr4_2:62722404-62722423 | None:intergenic | 30.0% | |
| GATAAACTACCCTAATATTG+TGG | - | chr4_2:62722419-62722438 | Msa0613810:intron | 30.0% | |
| !! | TTTGACTTGCCACAATATTA+GGG | + | chr4_2:62722431-62722450 | None:intergenic | 30.0% |
| !!! | TTTTGACTTGCCACAATATT+AGG | + | chr4_2:62722432-62722451 | None:intergenic | 30.0% |
| TAATATTGTGGCAAGTCAAA+AGG | - | chr4_2:62722431-62722450 | Msa0613810:intron | 30.0% | |
| TGTGTAGAATTAGAACTTTG+AGG | + | chr4_2:62722519-62722538 | None:intergenic | 30.0% | |
| AAATTATCAGTCCAAAGAAG+AGG | - | chr4_2:62722680-62722699 | Msa0613810:intron | 30.0% | |
| GGAGAAGATATTCTTAACAA+AGG | - | chr4_2:62722750-62722769 | Msa0613810:intron | 30.0% | |
| TATTCTTAACAAAGGGTTGA+AGG | - | chr4_2:62722758-62722777 | Msa0613810:intron | 30.0% | |
| ATTCTTAACAAAGGGTTGAA+GGG | - | chr4_2:62722759-62722778 | Msa0613810:intron | 30.0% | |
| !! | TCTTCTAGAGTTCAAGTAGT+TGG | + | chr4_2:62720108-62720127 | None:intergenic | 35.0% |
| !!! | TTTTGGTGTTAAGTCAGTTG+TGG | - | chr4_2:62720295-62720314 | Msa0613810:CDS | 35.0% |
| TTCTACCTATCTTAGTCTCA+CGG | - | chr4_2:62720358-62720377 | Msa0613810:CDS | 35.0% | |
| GACATTTAGTACTTAACGAG+AGG | - | chr4_2:62720382-62720401 | Msa0613810:intron | 35.0% | |
| TGAATGAAGTCTTACTTGCT+TGG | + | chr4_2:62720503-62720522 | None:intergenic | 35.0% | |
| !! | TCTCCTATTTAGGCTTTGTT+TGG | - | chr4_2:62720698-62720717 | Msa0613810:intron | 35.0% |
| !! | CTCCTATTTAGGCTTTGTTT+GGG | - | chr4_2:62720699-62720718 | Msa0613810:intron | 35.0% |
| ! | TTGTATTAGAGGAGGGTTTT+GGG | + | chr4_2:62720913-62720932 | None:intergenic | 35.0% |
| ! | ATTGTATTAGAGGAGGGTTT+TGG | + | chr4_2:62720914-62720933 | None:intergenic | 35.0% |
| ! | TTTAGTTCCTCCAAATGAAG+AGG | - | chr4_2:62720936-62720955 | Msa0613810:CDS | 35.0% |
| TTAGTTCCTCCAAATGAAGA+GGG | - | chr4_2:62720937-62720956 | Msa0613810:CDS | 35.0% | |
| ATAAAACCCTCTTCATTTGG+AGG | + | chr4_2:62720946-62720965 | None:intergenic | 35.0% | |
| TGGAAGAAATAGAGGACATT+GGG | + | chr4_2:62721005-62721024 | None:intergenic | 35.0% | |
| AGGGTTTGGAAAAAAAGGAA+GGG | + | chr4_2:62721033-62721052 | None:intergenic | 35.0% | |
| GAAACTATATGGGAAACAAG+TGG | - | chr4_2:62721286-62721305 | Msa0613810:intron | 35.0% | |
| TCATTAAGTTTCTTACTCGC+AGG | + | chr4_2:62721382-62721401 | None:intergenic | 35.0% | |
| !!! | TTTTGACTTGGCCCAATTTT+AGG | + | chr4_2:62721591-62721610 | None:intergenic | 35.0% |
| ACCTACACTACATAAGCAAA+AGG | - | chr4_2:62721821-62721840 | Msa0613810:intron | 35.0% | |
| ! | TCCTTTTGCTTATGTAGTGT+AGG | + | chr4_2:62721825-62721844 | None:intergenic | 35.0% |
| !! | GAACAAAGGCATCAAAGATT+TGG | - | chr4_2:62722007-62722026 | Msa0613810:intron | 35.0% |
| GCAAGTAAGGATTCATTTGT+AGG | - | chr4_2:62722064-62722083 | Msa0613810:intron | 35.0% | |
| GTTGGAACTTATTGATCCAA+TGG | - | chr4_2:62722182-62722201 | Msa0613810:intron | 35.0% | |
| !! | ACAAGTTTGTTTTCCACCAT+TGG | + | chr4_2:62722201-62722220 | None:intergenic | 35.0% |
| GTGGAAAACAAACTTGTACA+TGG | - | chr4_2:62722204-62722223 | Msa0613810:intron | 35.0% | |
| AAGCCTAAACCTTTCACATA+TGG | + | chr4_2:62722334-62722353 | None:intergenic | 35.0% | |
| CTAATTCTACACAGAAAGAG+TGG | - | chr4_2:62722526-62722545 | Msa0613810:CDS | 35.0% | |
| ACTTGAATTCCCACCTTAAT+GGG | - | chr4_2:62722589-62722608 | Msa0613810:intron | 35.0% | |
| !! | AACAGTGATGATGGATGATA+AGG | - | chr4_2:62722782-62722801 | Msa0613810:CDS | 35.0% |
| TAATGTTGTCCTTCATTGTG+AGG | - | chr4_2:62722896-62722915 | Msa0613810:CDS | 35.0% | |
| ATTTAAGTGAGAGACCACAT+TGG | + | chr4_2:62722922-62722941 | None:intergenic | 35.0% | |
| AATGTGGTCTCTCACTTAAA+TGG | - | chr4_2:62722921-62722940 | Msa0613810:CDS | 35.0% | |
| ATGTGGTCTCTCACTTAAAT+GGG | - | chr4_2:62722922-62722941 | Msa0613810:CDS | 35.0% | |
| CTTAAATGGGAAGATGCATT+TGG | - | chr4_2:62722935-62722954 | Msa0613810:CDS | 35.0% | |
| TTAGCTTAATGTATGGCCAG+AGG | + | chr4_2:62719805-62719824 | None:intergenic | 40.0% | |
| CATGGAGGTTAAACAACTAC+TGG | - | chr4_2:62719915-62719934 | Msa0613810:CDS | 40.0% | |
| TAAACAACTACTGGAGGAAG+TGG | - | chr4_2:62719924-62719943 | Msa0613810:CDS | 40.0% | |
| GTTGGCAATGAGTTTCTCTA+AGG | + | chr4_2:62720014-62720033 | None:intergenic | 40.0% | |
| AGAGAAACTCATTGCCAACA+AGG | - | chr4_2:62720015-62720034 | Msa0613810:CDS | 40.0% | |
| CACATAGCTGTTTACCTTGT+TGG | + | chr4_2:62720032-62720051 | None:intergenic | 40.0% | |
| CAACAAGGTAAACAGCTATG+TGG | - | chr4_2:62720030-62720049 | Msa0613810:CDS | 40.0% | |
| TCTATAGGGAACCAAGTATG+TGG | - | chr4_2:62720130-62720149 | Msa0613810:CDS | 40.0% | |
| CTTGATCTAGTGCAGACAAA+TGG | - | chr4_2:62720406-62720425 | Msa0613810:intron | 40.0% | |
| CTCCCAAACAAAGCCTAAAT+AGG | + | chr4_2:62720704-62720723 | None:intergenic | 40.0% | |
| !! | TTAGGCTTTGTTTGGGAGTT+CGG | - | chr4_2:62720706-62720725 | Msa0613810:intron | 40.0% |
| TTTGGGGGGAGAGAAATATA+GGG | - | chr4_2:62720749-62720768 | Msa0613810:CDS | 40.0% | |
| AAGAAATAGAGGACATTGGG+AGG | + | chr4_2:62721002-62721021 | None:intergenic | 40.0% | |
| GTGGAAGAAATAGAGGACAT+TGG | + | chr4_2:62721006-62721025 | None:intergenic | 40.0% | |
| GAAAAAAAGGAAGGGGTAAG+TGG | + | chr4_2:62721025-62721044 | None:intergenic | 40.0% | |
| GGGTTTGGAAAAAAAGGAAG+GGG | + | chr4_2:62721032-62721051 | None:intergenic | 40.0% | |
| GAGGGTTTGGAAAAAAAGGA+AGG | + | chr4_2:62721034-62721053 | None:intergenic | 40.0% | |
| !! | TAAGGCTTTGTTTGCGAGTT+TGG | + | chr4_2:62721071-62721090 | None:intergenic | 40.0% |
| CGAGTGATATACAAACACTG+TGG | + | chr4_2:62721103-62721122 | None:intergenic | 40.0% | |
| ATGAGCCATACTTCAGAGAA+GGG | + | chr4_2:62721410-62721429 | None:intergenic | 40.0% | |
| ATTCCCGTCATGCCTAAAAT+TGG | - | chr4_2:62721576-62721595 | Msa0613810:intron | 40.0% | |
| TTCCCGTCATGCCTAAAATT+GGG | - | chr4_2:62721577-62721596 | Msa0613810:intron | 40.0% | |
| GTTAATCTCTGCTGTTCCTT+TGG | + | chr4_2:62721637-62721656 | None:intergenic | 40.0% | |
| ACAGCAGAGATTAACAAAGC+TGG | - | chr4_2:62721642-62721661 | Msa0613810:intron | 40.0% | |
| TAGTCAGAGTTCTACACAGA+AGG | - | chr4_2:62721674-62721693 | Msa0613810:intron | 40.0% | |
| ACTTTGAATTGTCATCTCGG+TGG | - | chr4_2:62721753-62721772 | Msa0613810:intron | 40.0% | |
| ATCTCGGTGGAAAAAAACAC+AGG | - | chr4_2:62721766-62721785 | Msa0613810:intron | 40.0% | |
| TCTCGGTGGAAAAAAACACA+GGG | - | chr4_2:62721767-62721786 | Msa0613810:intron | 40.0% | |
| GAGTTTCTTGTGCAGACAAA+TGG | - | chr4_2:62721966-62721985 | Msa0613810:intron | 40.0% | |
| AGACTCCAAACAGAGAACAA+AGG | - | chr4_2:62721993-62722012 | Msa0613810:intron | 40.0% | |
| TGATGCCTTTGTTCTCTGTT+TGG | + | chr4_2:62722001-62722020 | None:intergenic | 40.0% | |
| !! | CAAAGGCATCAAAGATTTGG+AGG | - | chr4_2:62722010-62722029 | Msa0613810:intron | 40.0% |
| TTCCTGCAACTAAGCAAGTA+AGG | - | chr4_2:62722051-62722070 | Msa0613810:intron | 40.0% | |
| ATCCTTACTTGCTTAGTTGC+AGG | + | chr4_2:62722056-62722075 | None:intergenic | 40.0% | |
| !! | TCATTTGTAGGCTAGTTCTG+TGG | - | chr4_2:62722076-62722095 | Msa0613810:intron | 40.0% |
| AAACACACATGTGCATGGTA+CGG | + | chr4_2:62722121-62722140 | None:intergenic | 40.0% | |
| CATAGAAACACACATGTGCA+TGG | + | chr4_2:62722126-62722145 | None:intergenic | 40.0% | |
| GGAACTTATTGATCCAATGG+TGG | - | chr4_2:62722185-62722204 | Msa0613810:intron | 40.0% | |
| !! | ACTGAATGAGGCTAGTTCTA+TGG | + | chr4_2:62722253-62722272 | None:intergenic | 40.0% |
| AGGCCATATGTGAAAGGTTT+AGG | - | chr4_2:62722328-62722347 | Msa0613810:CDS | 40.0% | |
| ! | TGTTCCTTTAGTTTCCACCA+TGG | + | chr4_2:62722466-62722485 | None:intergenic | 40.0% |
| GTGGACTTGTGCTTTATGTT+CGG | - | chr4_2:62722545-62722564 | Msa0613810:CDS | 40.0% | |
| GACTTGAATTCCCACCTTAA+TGG | - | chr4_2:62722588-62722607 | Msa0613810:intron | 40.0% | |
| ! | TAGCTGTTTCACCTCTTCTT+TGG | + | chr4_2:62722694-62722713 | None:intergenic | 40.0% |
| GGTGCAAAAACTGCAAAAGA+AGG | - | chr4_2:62722803-62722822 | Msa0613810:CDS | 40.0% | |
| TTGGAATTATGCATCCCAAC+AGG | + | chr4_2:62722858-62722877 | None:intergenic | 40.0% | |
| !! | CATCTTCTGGCTCATCATAC+CGG | - | chr4_2:62719829-62719848 | Msa0613810:CDS | 45.0% |
| TAAGAAGCTCGTCCAAAGTC+CGG | + | chr4_2:62719851-62719870 | None:intergenic | 45.0% | |
| TGTGACTACTTGCGGTTTCA+TGG | + | chr4_2:62719897-62719916 | None:intergenic | 45.0% | |
| TGAAACCGCAAGTAGTCACA+TGG | - | chr4_2:62719897-62719916 | Msa0613810:CDS | 45.0% | |
| AACCTCCATGTGACTACTTG+CGG | + | chr4_2:62719905-62719924 | None:intergenic | 45.0% | |
| GGAGGTTAAACAACTACTGG+AGG | - | chr4_2:62719918-62719937 | Msa0613810:CDS | 45.0% | |
| ! | TCATTTGTCGCTTCTGCATC+AGG | + | chr4_2:62720235-62720254 | None:intergenic | 45.0% |
| TGTCACCGTGAGACTAAGAT+AGG | + | chr4_2:62720366-62720385 | None:intergenic | 45.0% | |
| ! | AGTCTTACTTGCTTGGTAGC+AGG | + | chr4_2:62720496-62720515 | None:intergenic | 45.0% |
| ! | TAGGCTTGAGGCATTCTAAG+AGG | - | chr4_2:62720551-62720570 | Msa0613810:intron | 45.0% |
| TTGCTCTTGTTGAGTGCTCT+GGG | - | chr4_2:62720604-62720623 | Msa0613810:intron | 45.0% | |
| ! | CTTTGGGGGGAGAGAAATAT+AGG | - | chr4_2:62720748-62720767 | Msa0613810:CDS | 45.0% |
| !!! | ATTAGAGGAGGGTTTTGGGA+GGG | + | chr4_2:62720909-62720928 | None:intergenic | 45.0% |
| !!! | TATTAGAGGAGGGTTTTGGG+AGG | + | chr4_2:62720910-62720929 | None:intergenic | 45.0% |
| AATAGAGGACATTGGGAGGA+GGG | + | chr4_2:62720998-62721017 | None:intergenic | 45.0% | |
| AAATAGAGGACATTGGGAGG+AGG | + | chr4_2:62720999-62721018 | None:intergenic | 45.0% | |
| GGGGTAAGTGGAAGAAATAG+AGG | + | chr4_2:62721013-62721032 | None:intergenic | 45.0% | |
| AGGGGAGGGTTTGGAAAAAA+AGG | + | chr4_2:62721038-62721057 | None:intergenic | 45.0% | |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | + | chr4_2:62721066-62721085 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | + | chr4_2:62721067-62721086 | None:intergenic | 45.0% |
| GATGAGCCATACTTCAGAGA+AGG | + | chr4_2:62721411-62721430 | None:intergenic | 45.0% | |
| ! | TGGCCCAATTTTAGGCATGA+CGG | + | chr4_2:62721583-62721602 | None:intergenic | 45.0% |
| !!! | GCTGATGACGCATTTTGACT+TGG | + | chr4_2:62721603-62721622 | None:intergenic | 45.0% |
| ! | TGTTCCTTTGGTTTCCACTG+TGG | + | chr4_2:62721625-62721644 | None:intergenic | 45.0% |
| GCAGAGATTAACAAAGCTGG+TGG | - | chr4_2:62721645-62721664 | Msa0613810:intron | 45.0% | |
| GATTAACAAAGCTGGTGGAG+AGG | - | chr4_2:62721650-62721669 | Msa0613810:intron | 45.0% | |
| ! | AGAAGGAAGTGCAGAAAGAG+TGG | - | chr4_2:62721691-62721710 | Msa0613810:intron | 45.0% |
| GTGGACGTGTGCTTTATGTT+TGG | - | chr4_2:62721710-62721729 | Msa0613810:intron | 45.0% | |
| !! | AGGCTAGTTCTATGGTGCAT+AGG | + | chr4_2:62722245-62722264 | None:intergenic | 45.0% |
| TAGATTCGAGGCATGCTAAG+AGG | - | chr4_2:62722308-62722327 | Msa0613810:CDS | 45.0% | |
| GCTAAGAGGCCATATGTGAA+AGG | - | chr4_2:62722322-62722341 | Msa0613810:CDS | 45.0% | |
| !! | TCAAAAGGCATCATCAGCCA+TGG | - | chr4_2:62722446-62722465 | Msa0613810:intron | 45.0% |
| ! | TCAGCCATGGTGGAAACTAA+AGG | - | chr4_2:62722459-62722478 | Msa0613810:intron | 45.0% |
| ACTAAAGGAACAGCAGAGAG+CGG | - | chr4_2:62722474-62722493 | Msa0613810:intron | 45.0% | |
| TGAATTCCCACCTTAATGGG+AGG | - | chr4_2:62722592-62722611 | Msa0613810:intron | 45.0% | |
| GTGTTTCCTCCCATTAAGGT+GGG | + | chr4_2:62722601-62722620 | None:intergenic | 45.0% | |
| TGTGTTTCCTCCCATTAAGG+TGG | + | chr4_2:62722602-62722621 | None:intergenic | 45.0% | |
| CTCTGTGTTTCCTCCCATTA+AGG | + | chr4_2:62722605-62722624 | None:intergenic | 45.0% | |
| GTTGAAGGGAACAGTGATGA+TGG | - | chr4_2:62722773-62722792 | Msa0613810:CDS | 45.0% | |
| AAGCAATGCAAGTGTCCCTA+AGG | + | chr4_2:62722995-62723014 | None:intergenic | 45.0% | |
| GTGACATCAGGTTTCACCTC+TGG | - | chr4_2:62719786-62719805 | Msa0613810:CDS | 50.0% | |
| TGGCTCATCATACCGGACTT+TGG | - | chr4_2:62719836-62719855 | Msa0613810:CDS | 50.0% | |
| AACCGCAAGTAGTCACATGG+AGG | - | chr4_2:62719900-62719919 | Msa0613810:CDS | 50.0% | |
| GTTGCTCTTGTTGAGTGCTC+TGG | - | chr4_2:62720603-62720622 | Msa0613810:intron | 50.0% | |
| !! | GCTTTGTTTGGGAGTTCGGA+GGG | - | chr4_2:62720710-62720729 | Msa0613810:intron | 50.0% |
| ! | CTTTGTTTGGGAGTTCGGAG+GGG | - | chr4_2:62720711-62720730 | Msa0613810:intron | 50.0% |
| ATAGAGGACATTGGGAGGAG+GGG | + | chr4_2:62720997-62721016 | None:intergenic | 50.0% | |
| TTTGCGAGTTTGGAGGGGAA+GGG | + | chr4_2:62721061-62721080 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | + | chr4_2:62721068-62721087 | None:intergenic | 50.0% |
| !! | TGCCACCCTTCTCTGAAGTA+TGG | - | chr4_2:62721402-62721421 | Msa0613810:intron | 50.0% |
| AGCCATACTTCAGAGAAGGG+TGG | + | chr4_2:62721407-62721426 | None:intergenic | 50.0% | |
| ! | GGCCCAATTTTAGGCATGAC+GGG | + | chr4_2:62721582-62721601 | None:intergenic | 50.0% |
| AAATGCGTCATCAGCCACAG+TGG | - | chr4_2:62721608-62721627 | Msa0613810:intron | 50.0% | |
| TCAGCCACAGTGGAAACCAA+AGG | - | chr4_2:62721618-62721637 | Msa0613810:intron | 50.0% | |
| CTGTGGTGCACAAGTGAAGT+AGG | - | chr4_2:62722093-62722112 | Msa0613810:intron | 50.0% | |
| TGTGTGTGTGTGTGTGTGTG+TGG | - | chr4_2:62722359-62722378 | Msa0613810:intron | 50.0% | |
| !! | AAAGGCATCATCAGCCATGG+TGG | - | chr4_2:62722449-62722468 | Msa0613810:intron | 50.0% |
| AAGAACCTGTGTGAGCCTGT+TGG | - | chr4_2:62722840-62722859 | Msa0613810:CDS | 50.0% | |
| AGAACCTGTGTGAGCCTGTT+GGG | - | chr4_2:62722841-62722860 | Msa0613810:CDS | 50.0% | |
| ! | CCACATTGGCCTCACAATGA+AGG | + | chr4_2:62722908-62722927 | None:intergenic | 50.0% |
| CCTTCATTGTGAGGCCAATG+TGG | - | chr4_2:62722905-62722924 | Msa0613810:CDS | 50.0% | |
| !! | GGCTTTGTTTGGGAGTTCGG+AGG | - | chr4_2:62720709-62720728 | Msa0613810:intron | 55.0% |
| ACATTGGGAGGAGGGGCTTT+GGG | + | chr4_2:62720990-62721009 | None:intergenic | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+AGG | + | chr4_2:62721062-62721081 | None:intergenic | 55.0% | |
| TGTTTGGGAGTTCGGAGGGG+AGG | - | chr4_2:62720714-62720733 | Msa0613810:intron | 60.0% | |
| GTTTGGGAGTTCGGAGGGGA+GGG | - | chr4_2:62720715-62720734 | Msa0613810:intron | 60.0% | |
| TTTGGGAGTTCGGAGGGGAG+GGG | - | chr4_2:62720716-62720735 | Msa0613810:intron | 60.0% | |
| GGAGGGGAAGGAAGGGCTTT+GGG | - | chr4_2:62720732-62720751 | Msa0613810:CDS | 60.0% | |
| GAGGGGAAGGAAGGGCTTTG+GGG | - | chr4_2:62720733-62720752 | Msa0613810:CDS | 60.0% | |
| ! | AGGGGAAGGAAGGGCTTTGG+GGG | - | chr4_2:62720734-62720753 | Msa0613810:CDS | 60.0% |
| ! | ATTGGGAGGAGGGGCTTTGG+GGG | + | chr4_2:62720988-62721007 | None:intergenic | 60.0% |
| CATTGGGAGGAGGGGCTTTG+GGG | + | chr4_2:62720989-62721008 | None:intergenic | 60.0% | |
| GACATTGGGAGGAGGGGCTT+TGG | + | chr4_2:62720991-62721010 | None:intergenic | 60.0% | |
| GAGTTTGGAGGGGAAGGGAG+GGG | + | chr4_2:62721056-62721075 | None:intergenic | 60.0% | |
| CGAGTTTGGAGGGGAAGGGA+GGG | + | chr4_2:62721057-62721076 | None:intergenic | 60.0% | |
| ACAGCAGAGAGCGGCAAAGC+TGG | - | chr4_2:62722483-62722502 | Msa0613810:intron | 60.0% | |
| GCATCCCAACAGGCTCACAC+AGG | + | chr4_2:62722848-62722867 | None:intergenic | 60.0% | |
| TTCGGAGGGGAGGGGAAGGA+AGG | - | chr4_2:62720724-62720743 | Msa0613810:intron | 65.0% | |
| TCGGAGGGGAGGGGAAGGAA+GGG | - | chr4_2:62720725-62720744 | Msa0613810:intron | 65.0% | |
| GGGAGGGGAAGGAAGGGCTT+TGG | - | chr4_2:62720731-62720750 | Msa0613810:CDS | 65.0% | |
| !! | GGGGAAGGAAGGGCTTTGGG+GGG | - | chr4_2:62720735-62720754 | Msa0613810:CDS | 65.0% |
| !! | TTGGGAGGAGGGGCTTTGGG+GGG | + | chr4_2:62720987-62721006 | None:intergenic | 65.0% |
| TTGGAGGGGAAGGGAGGGGA+GGG | + | chr4_2:62721052-62721071 | None:intergenic | 65.0% | |
| TTTGGAGGGGAAGGGAGGGG+AGG | + | chr4_2:62721053-62721072 | None:intergenic | 65.0% | |
| GCGAGTTTGGAGGGGAAGGG+AGG | + | chr4_2:62721058-62721077 | None:intergenic | 65.0% | |
| GCAGAGAGCGGCAAAGCTGG+TGG | - | chr4_2:62722486-62722505 | Msa0613810:intron | 65.0% | |
| GAGCGGCAAAGCTGGTGGCA+AGG | - | chr4_2:62722491-62722510 | Msa0613810:intron | 65.0% | |
| GGAGTTCGGAGGGGAGGGGA+AGG | - | chr4_2:62720720-62720739 | Msa0613810:intron | 70.0% | |
| GGGGAAGGGAGGGGAGGGTT+TGG | + | chr4_2:62721047-62721066 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 62719782 | 62723016 | 62719782 | ID=Msa0613810;Name=Msa0613810 |
| chr4_2 | mRNA | 62719782 | 62723016 | 62719782 | ID=Msa0613810-mRNA-1;Parent=Msa0613810;Name=Msa0613810-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0.33|0.14|0.85|1|1|7|0|493 |
| chr4_2 | exon | 62722762 | 62723016 | 62722762 | ID=Msa0613810-mRNA-1:exon:17337;Parent=Msa0613810-mRNA-1 |
| chr4_2 | exon | 62722510 | 62722581 | 62722510 | ID=Msa0613810-mRNA-1:exon:17336;Parent=Msa0613810-mRNA-1 |
| chr4_2 | exon | 62722291 | 62722377 | 62722291 | ID=Msa0613810-mRNA-1:exon:17335;Parent=Msa0613810-mRNA-1 |
| chr4_2 | exon | 62721464 | 62721523 | 62721464 | ID=Msa0613810-mRNA-1:exon:17334;Parent=Msa0613810-mRNA-1 |
| chr4_2 | exon | 62720902 | 62721225 | 62720902 | ID=Msa0613810-mRNA-1:exon:17333;Parent=Msa0613810-mRNA-1 |
| chr4_2 | exon | 62720731 | 62720817 | 62720731 | ID=Msa0613810-mRNA-1:exon:17332;Parent=Msa0613810-mRNA-1 |
| chr4_2 | exon | 62719782 | 62720378 | 62719782 | ID=Msa0613810-mRNA-1:exon:17331;Parent=Msa0613810-mRNA-1 |
| chr4_2 | CDS | 62722762 | 62723016 | 62722762 | ID=Msa0613810-mRNA-1:cds;Parent=Msa0613810-mRNA-1 |
| chr4_2 | CDS | 62722510 | 62722581 | 62722510 | ID=Msa0613810-mRNA-1:cds;Parent=Msa0613810-mRNA-1 |
| chr4_2 | CDS | 62722291 | 62722377 | 62722291 | ID=Msa0613810-mRNA-1:cds;Parent=Msa0613810-mRNA-1 |
| chr4_2 | CDS | 62721464 | 62721523 | 62721464 | ID=Msa0613810-mRNA-1:cds;Parent=Msa0613810-mRNA-1 |
| chr4_2 | CDS | 62720902 | 62721225 | 62720902 | ID=Msa0613810-mRNA-1:cds;Parent=Msa0613810-mRNA-1 |
| chr4_2 | CDS | 62720731 | 62720817 | 62720731 | ID=Msa0613810-mRNA-1:cds;Parent=Msa0613810-mRNA-1 |
| chr4_2 | CDS | 62719782 | 62720378 | 62719782 | ID=Msa0613810-mRNA-1:cds;Parent=Msa0613810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
