Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656590 | XP_003629721.2 | 92.266 | 556 | 43 | 0 | 4 | 559 | 1 | 556 | 0.0 | 1079 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656590 | sp|Q8W496|PTC52_ARATH | 56.915 | 564 | 201 | 10 | 1 | 529 | 1 | 557 | 0.0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018220 | Msa0656590 | 0.813084 | 3.060972e-51 | -8.615850e-47 |
| Msa0052020 | Msa0656590 | 0.802644 | 5.086901e-49 | -8.615850e-47 |
| Msa0094420 | Msa0656590 | 0.816961 | 4.221154e-52 | -8.615850e-47 |
| Msa0097050 | Msa0656590 | 0.809142 | 2.189467e-50 | -8.615850e-47 |
| Msa0603680 | Msa0656590 | 0.816024 | 6.842807e-52 | -8.615850e-47 |
| Msa0634270 | Msa0656590 | 0.810089 | 1.370573e-50 | -8.615850e-47 |
| Msa0640390 | Msa0656590 | 0.815279 | 1.002690e-51 | -8.615850e-47 |
| Msa0656590 | Msa0678890 | 0.814313 | 1.641727e-51 | -8.615850e-47 |
| Msa0656590 | Msa0700850 | 0.812501 | 4.106711e-51 | -8.615850e-47 |
| Msa0656590 | Msa0700910 | 0.869872 | 2.236190e-66 | -8.615850e-47 |
| Msa0656590 | Msa0722940 | 0.819354 | 1.213788e-52 | -8.615850e-47 |
| Msa0656590 | Msa0723150 | 0.820579 | 6.367659e-53 | -8.615850e-47 |
| Msa0656590 | Msa0740420 | 0.809243 | 2.083058e-50 | -8.615850e-47 |
| Msa0656590 | Msa0820670 | 0.819863 | 9.288448e-53 | -8.615850e-47 |
| Msa0656590 | Msa0843290 | 0.824646 | 7.212745e-54 | -8.615850e-47 |
| Msa0656590 | Msa0931480 | 0.802918 | 4.466522e-49 | -8.615850e-47 |
| Msa0656590 | Msa1044040 | 0.804258 | 2.355229e-49 | -8.615850e-47 |
| Msa0656590 | Msa1055260 | 0.801016 | 1.098371e-48 | -8.615850e-47 |
| Msa0656590 | Msa1147200 | 0.803282 | 3.755783e-49 | -8.615850e-47 |
| Msa0656590 | Msa1190910 | 0.803841 | 2.874908e-49 | -8.615850e-47 |
| Msa0656590 | Msa1200920 | 0.813897 | 2.028137e-51 | -8.615850e-47 |
| Msa0656590 | Msa1200930 | 0.806041 | 9.972784e-50 | -8.615850e-47 |
| Msa0656590 | Msa1201990 | 0.802932 | 4.436204e-49 | -8.615850e-47 |
| Msa0656590 | Msa1213060 | 0.806474 | 8.081679e-50 | -8.615850e-47 |
| Msa0656590 | Msa1221260 | 0.811443 | 6.981952e-51 | -8.615850e-47 |
| Msa0656590 | Msa1232860 | 0.851790 | 7.052485e-61 | -8.615850e-47 |
| Msa0656590 | Msa1275290 | 0.815403 | 9.409698e-52 | -8.615850e-47 |
| Msa0656590 | Msa1302150 | 0.800888 | 1.166727e-48 | -8.615850e-47 |
| Msa0656590 | Msa1379070 | 0.809129 | 2.203999e-50 | -8.615850e-47 |
| Msa0656590 | Msa1379090 | 0.806442 | 8.209166e-50 | -8.615850e-47 |
| Msa0656590 | Msa1421810 | 0.807192 | 5.698125e-50 | -8.615850e-47 |
| Msa0130120 | Msa0656590 | 0.808926 | 2.435679e-50 | -8.615850e-47 |
| Msa0141670 | Msa0656590 | 0.810017 | 1.420470e-50 | -8.615850e-47 |
| Msa0207180 | Msa0656590 | 0.827840 | 1.252824e-54 | -8.615850e-47 |
| Msa0219660 | Msa0656590 | 0.807127 | 5.883337e-50 | -8.615850e-47 |
| Msa0230400 | Msa0656590 | 0.820255 | 7.556557e-53 | -8.615850e-47 |
| Msa0371610 | Msa0656590 | 0.801727 | 7.855266e-49 | -8.615850e-47 |
| Msa0392450 | Msa0656590 | 0.800235 | 1.585319e-48 | -8.615850e-47 |
| Msa0418480 | Msa0656590 | 0.807040 | 6.138477e-50 | -8.615850e-47 |
| Msa0420070 | Msa0656590 | 0.802197 | 6.287732e-49 | -8.615850e-47 |
| Msa0465860 | Msa0656590 | 0.802091 | 6.613647e-49 | -8.615850e-47 |
| Msa0260970 | Msa0656590 | 0.800721 | 1.262102e-48 | -8.615850e-47 |
| Msa0265780 | Msa0656590 | 0.802119 | 6.525945e-49 | -8.615850e-47 |
| Msa0274780 | Msa0656590 | 0.815935 | 7.162049e-52 | -8.615850e-47 |
| Msa0315480 | Msa0656590 | 0.833889 | 4.115481e-56 | -8.615850e-47 |
| Msa0331780 | Msa0656590 | 0.803922 | 2.765792e-49 | -8.615850e-47 |
| Msa0358230 | Msa0656590 | 0.801049 | 1.081623e-48 | -8.615850e-47 |
| Msa0487620 | Msa0656590 | 0.809682 | 1.677015e-50 | -8.615850e-47 |
| Msa0510230 | Msa0656590 | 0.814402 | 1.568738e-51 | -8.615850e-47 |
| Msa0538570 | Msa0656590 | 0.805478 | 1.309512e-49 | -8.615850e-47 |
| Msa0543850 | Msa0656590 | 0.825266 | 5.147346e-54 | -8.615850e-47 |
| Msa0558820 | Msa0656590 | 0.822435 | 2.372510e-53 | -8.615850e-47 |
| Msa0581340 | Msa0656590 | 0.809384 | 1.943029e-50 | -8.615850e-47 |
| Msa0594390 | Msa0656590 | 0.807103 | 5.951296e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656590 | MtrunA17_Chr8g0378671 | 92.266 | 556 | 43 | 0 | 4 | 559 | 1 | 556 | 0.0 | 1079 |
| Msa0656590 | MtrunA17_Chr8g0378721 | 88.068 | 528 | 60 | 2 | 4 | 529 | 1 | 527 | 0.0 | 981 |
| Msa0656590 | MtrunA17_Chr8g0378701 | 87.824 | 386 | 44 | 2 | 1 | 384 | 12 | 396 | 0.0 | 714 |
| Msa0656590 | MtrunA17_Chr8g0378691 | 83.893 | 149 | 24 | 0 | 384 | 532 | 9 | 157 | 6.31e-88 | 269 |
| Msa0656590 | MtrunA17_Chr4g0027961 | 35.095 | 473 | 262 | 15 | 81 | 527 | 89 | 542 | 1.04e-82 | 268 |
| Msa0656590 | MtrunA17_Chr3g0136771 | 27.972 | 429 | 258 | 11 | 70 | 467 | 84 | 492 | 1.38e-46 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656590 | AT4G25650.1 | 59.041 | 542 | 201 | 9 | 1 | 529 | 1 | 534 | 0.0 | 655 |
| Msa0656590 | AT4G25650.2 | 56.915 | 564 | 201 | 10 | 1 | 529 | 1 | 557 | 0.0 | 647 |
| Msa0656590 | AT3G44880.1 | 34.674 | 522 | 275 | 19 | 46 | 528 | 39 | 533 | 9.17e-85 | 273 |
| Msa0656590 | AT2G24820.1 | 28.256 | 453 | 265 | 12 | 52 | 467 | 50 | 479 | 3.23e-48 | 176 |
| Msa0656590 | AT1G44446.4 | 22.043 | 372 | 208 | 17 | 88 | 433 | 119 | 434 | 5.85e-12 | 68.6 |
| Msa0656590 | AT1G44446.1 | 22.043 | 372 | 208 | 17 | 88 | 433 | 221 | 536 | 7.32e-12 | 68.6 |
Find 138 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAACTTGGGAACAATTAT+TGG | 0.180310 | 4_3:-65946019 | None:intergenic |
| TCTGAACTTGTTTCAACTTC+TGG | 0.199220 | 4_3:-65946337 | None:intergenic |
| TCCATCATTTGCTAGCTTAA+TGG | 0.218538 | 4_3:+65947093 | Msa0656590:CDS |
| TTGAATCGAGGATCAGTATT+TGG | 0.226374 | 4_3:-65947022 | None:intergenic |
| TGGTGCTTTCCGAGAAATTT+TGG | 0.234178 | 4_3:+65948092 | Msa0656590:CDS |
| CCATCATTTGCTAGCTTAAT+GGG | 0.262213 | 4_3:+65947094 | Msa0656590:CDS |
| AGAATAATATCTTGTGGTTT+TGG | 0.262792 | 4_3:+65946999 | Msa0656590:CDS |
| CACTACATTGAGGCTCTTAT+AGG | 0.275331 | 4_3:-65949130 | None:intergenic |
| ATCATATCAGTTGCTTCAAT+TGG | 0.287082 | 4_3:+65949168 | Msa0656590:CDS |
| AATGATGGATCATCAATTTC+TGG | 0.296431 | 4_3:-65947079 | None:intergenic |
| TGGATGCTGGTCAAGAAAAT+TGG | 0.301039 | 4_3:+65948433 | Msa0656590:CDS |
| TCAATCCTTCCTTCAGATAA+AGG | 0.315750 | 4_3:-65946526 | None:intergenic |
| CAATGGTTTCACTGCAAATC+AGG | 0.316257 | 4_3:+65947834 | Msa0656590:CDS |
| CTACTACTGGAATCTGTTAA+TGG | 0.328223 | 4_3:-65946292 | None:intergenic |
| GGAAACAGAGATATTCCTTA+TGG | 0.335690 | 4_3:+65947115 | Msa0656590:CDS |
| TGGGAATTGATGTTGTTATA+TGG | 0.344667 | 4_3:+65946443 | Msa0656590:CDS |
| GAAGTGTTCCCACGGATTAA+TGG | 0.348211 | 4_3:-65946235 | None:intergenic |
| AACTTCGTTTCCCTAGGAAT+TGG | 0.355059 | 4_3:-65945982 | None:intergenic |
| ACAGAAGATGCAAGTTCATC+TGG | 0.362015 | 4_3:-65947910 | None:intergenic |
| CAAATGTCTCTTATAAATAT+AGG | 0.368241 | 4_3:-65949405 | None:intergenic |
| CACTTGAAGGTTACTACTAC+TGG | 0.371188 | 4_3:-65946305 | None:intergenic |
| ACCTCCTAGAGAACAGCTTA+TGG | 0.373079 | 4_3:+65948581 | Msa0656590:CDS |
| ACAAGAGCATCTGCCTTTGT+TGG | 0.398543 | 4_3:-65948474 | None:intergenic |
| AAGGCAGATGCTCTTGTGAT+TGG | 0.399532 | 4_3:+65948480 | Msa0656590:CDS |
| AAATGGTTAAAGAAGTATTC+AGG | 0.400085 | 4_3:+65948510 | Msa0656590:CDS |
| TGCATCTTCTGTTGAAACTA+AGG | 0.404424 | 4_3:+65947921 | Msa0656590:CDS |
| TGCCTTTGTTGGCATAAAAC+AGG | 0.404897 | 4_3:-65948463 | None:intergenic |
| TGTTTAGCACTCCAATTCCT+AGG | 0.411435 | 4_3:+65945971 | Msa0656590:five_prime_UTR |
| GTTAATCCATAGTGTGCATA+TGG | 0.414358 | 4_3:-65947647 | None:intergenic |
| CTGGTTCATCATCCACTTGA+AGG | 0.415089 | 4_3:-65946318 | None:intergenic |
| TGAAGGAAGGATTGATCAAT+GGG | 0.415631 | 4_3:+65946534 | Msa0656590:CDS |
| CCCATTAAGCTAGCAAATGA+TGG | 0.416361 | 4_3:-65947094 | None:intergenic |
| ATATTATTCTGCACAATGCT+TGG | 0.417838 | 4_3:-65946986 | None:intergenic |
| ATTGAAGAGTTAGATATCAA+TGG | 0.427054 | 4_3:+65947817 | Msa0656590:CDS |
| TTCATTATATTTCTCCAAGT+TGG | 0.430747 | 4_3:+65949360 | Msa0656590:CDS |
| CATCAATTTCTGGTATGAAT+GGG | 0.432152 | 4_3:-65947069 | None:intergenic |
| TCATCAATTTCTGGTATGAA+TGG | 0.435029 | 4_3:-65947070 | None:intergenic |
| CTGGTAATAGTAGACTGATT+TGG | 0.436210 | 4_3:+65948072 | Msa0656590:CDS |
| ACCCACAGTCCAAAATTTCT+CGG | 0.439221 | 4_3:-65948101 | None:intergenic |
| AAGAAATTCTATAGTTGTGC+TGG | 0.439574 | 4_3:+65949233 | Msa0656590:CDS |
| ATTCAGGTGATCAAGTTGAT+TGG | 0.449333 | 4_3:+65948526 | Msa0656590:CDS |
| CATGTTCCATATGCACACTA+TGG | 0.450961 | 4_3:+65947641 | Msa0656590:CDS |
| ATTTGTATTCCTGTGAGTCC+TGG | 0.453411 | 4_3:+65948053 | Msa0656590:CDS |
| CAATATGTGATCTTGACAAA+AGG | 0.457440 | 4_3:+65946398 | Msa0656590:CDS |
| ATTTAAGAGAAGTTGAAACT+TGG | 0.464459 | 4_3:-65946032 | None:intergenic |
| TCATATCAGTTGCTTCAATT+GGG | 0.473164 | 4_3:+65949169 | Msa0656590:CDS |
| TAATGCAGAAATCATCCGTT+CGG | 0.475564 | 4_3:+65948009 | Msa0656590:intron |
| CTGAAGGAAGGATTGATCAA+TGG | 0.475748 | 4_3:+65946533 | Msa0656590:CDS |
| GAAACAGAGATATTCCTTAT+GGG | 0.476962 | 4_3:+65947116 | Msa0656590:CDS |
| CTCTAGGAGGTGTAGGAGGA+AGG | 0.487449 | 4_3:-65948569 | None:intergenic |
| AACGAAGTTCGGTCAGGAGC+TGG | 0.491198 | 4_3:+65945996 | Msa0656590:five_prime_UTR |
| TGATTGCAAGTTCATTCCTC+AGG | 0.492594 | 4_3:+65946603 | Msa0656590:CDS |
| AATAATGCTGATAGAGAAGG+AGG | 0.493895 | 4_3:+65947775 | Msa0656590:CDS |
| GATTGGAGAGGAAAATATAG+TGG | 0.496907 | 4_3:+65948543 | Msa0656590:CDS |
| GATTGTTGCTGCAATGAAGC+AGG | 0.501617 | 4_3:+65949191 | Msa0656590:CDS |
| TTTAAGAGAAGTTGAAACTT+GGG | 0.510025 | 4_3:-65946031 | None:intergenic |
| GGCACCTCGTGAAGGACCTC+CGG | 0.516187 | 4_3:+65946624 | Msa0656590:CDS |
| ATTTCATCGAAGAGCGTACA+TGG | 0.516498 | 4_3:-65949329 | None:intergenic |
| AAATTAAAATCATACCCATA+AGG | 0.517619 | 4_3:-65947130 | None:intergenic |
| GATAAAGGTGCTAATCTATG+AGG | 0.517916 | 4_3:-65946511 | None:intergenic |
| TATAAATAAAAGATGCTTGG+TGG | 0.517953 | 4_3:-65947880 | None:intergenic |
| CTATATAAATAAAAGATGCT+TGG | 0.518931 | 4_3:-65947883 | None:intergenic |
| GTCTCTTATAAATATAGGAC+CGG | 0.522045 | 4_3:-65949400 | None:intergenic |
| AACTCTTGCAATTCACCGTA+TGG | 0.523296 | 4_3:-65949098 | None:intergenic |
| AATATGTGATCTTGACAAAA+GGG | 0.523473 | 4_3:+65946399 | Msa0656590:CDS |
| ATTCCTAGGGAAACGAAGTT+CGG | 0.526687 | 4_3:+65945985 | Msa0656590:five_prime_UTR |
| TAGGGAAACGAAGTTCGGTC+AGG | 0.527930 | 4_3:+65945990 | Msa0656590:five_prime_UTR |
| AGATCACATATTGGCATCAA+AGG | 0.530584 | 4_3:-65946388 | None:intergenic |
| GTTTCACTGCAAATCAGGGT+TGG | 0.531039 | 4_3:+65947839 | Msa0656590:CDS |
| TTTATATCTTCTCCATGTTG+AGG | 0.531042 | 4_3:+65948184 | Msa0656590:CDS |
| AATGGTTTCACTGCAAATCA+GGG | 0.531344 | 4_3:+65947835 | Msa0656590:CDS |
| ACCGCGATGGATTCTTCATG+TGG | 0.533829 | 4_3:+65948136 | Msa0656590:CDS |
| CTGTCCATAAGCTGTTCTCT+AGG | 0.535255 | 4_3:-65948585 | None:intergenic |
| CTGGAATCTGTTAATGGAGA+AGG | 0.535723 | 4_3:-65946286 | None:intergenic |
| TAGCACCTTTATCTGAAGGA+AGG | 0.536409 | 4_3:+65946521 | Msa0656590:CDS |
| TGGTCAAGAAAATTGGCATA+AGG | 0.536911 | 4_3:+65948440 | Msa0656590:CDS |
| CCCATCACTTTCTTAGCATG+AGG | 0.538954 | 4_3:-65946424 | None:intergenic |
| AGATTAGCACCTTTATCTGA+AGG | 0.544881 | 4_3:+65946517 | Msa0656590:CDS |
| CAAATCAGTCTACTATTACC+AGG | 0.545513 | 4_3:-65948071 | None:intergenic |
| GTTTAGCACTCCAATTCCTA+GGG | 0.547633 | 4_3:+65945972 | Msa0656590:five_prime_UTR |
| AGGTTACAGTGTGTGTATCA+TGG | 0.551337 | 4_3:+65946559 | Msa0656590:CDS |
| CTACTATTACCAGGACTCAC+AGG | 0.551379 | 4_3:-65948062 | None:intergenic |
| CATAGAAAATTTCTTCCGAA+CGG | 0.556398 | 4_3:-65948024 | None:intergenic |
| GGATTAACTCCAGACCCAAA+AGG | 0.558427 | 4_3:+65947662 | Msa0656590:CDS |
| CTAGAGAACAGCTTATGGAC+AGG | 0.559328 | 4_3:+65948586 | Msa0656590:CDS |
| TTTATAAGAGACATTTGAGC+CGG | 0.561595 | 4_3:+65949411 | Msa0656590:exon |
| ATCAATTTCTGGTATGAATG+GGG | 0.563979 | 4_3:-65947068 | None:intergenic |
| GATTCAAAGATATTATTACA+AGG | 0.564688 | 4_3:+65947038 | Msa0656590:CDS |
| ACCTCATGCTAAGAAAGTGA+TGG | 0.565040 | 4_3:+65946423 | Msa0656590:CDS |
| GTGAATAATGCTGATAGAGA+AGG | 0.565634 | 4_3:+65947772 | Msa0656590:intron |
| TACAGTGTGTGTATCATGGT+TGG | 0.568463 | 4_3:+65946563 | Msa0656590:CDS |
| GAAGGATTGATCAATGGGGT+AGG | 0.572052 | 4_3:+65946539 | Msa0656590:CDS |
| TGTTCTCTAGGAGGTGTAGG+AGG | 0.574266 | 4_3:-65948573 | None:intergenic |
| CAAGTTCAGAGAAATTTGAC+TGG | 0.578841 | 4_3:+65946350 | Msa0656590:CDS |
| AGCTGTTCTCTAGGAGGTGT+AGG | 0.578889 | 4_3:-65948576 | None:intergenic |
| TACTTTCATTCGCATTGTCG+CGG | 0.580974 | 4_3:+65949259 | Msa0656590:CDS |
| CCTCATGCTAAGAAAGTGAT+GGG | 0.581206 | 4_3:+65946424 | Msa0656590:CDS |
| CAACACTTCCATTAATCCGT+GGG | 0.582136 | 4_3:+65946227 | Msa0656590:CDS |
| CAGTAGTAGTAACCTTCAAG+TGG | 0.583020 | 4_3:+65946306 | Msa0656590:CDS |
| AATTGATGTTGTTATATGGT+GGG | 0.583888 | 4_3:+65946447 | Msa0656590:CDS |
| TGACCGAACTTCGTTTCCCT+AGG | 0.584987 | 4_3:-65945988 | None:intergenic |
| TGCTGCAATGAAGCAGGGAA+TGG | 0.586407 | 4_3:+65949197 | Msa0656590:CDS |
| TCATACACATCAATTTATGC+CGG | 0.586744 | 4_3:-65949430 | None:intergenic |
| GAATTGATGTTGTTATATGG+TGG | 0.587435 | 4_3:+65946446 | Msa0656590:CDS |
| TCTAGGAGGTGTAGGAGGAA+GGG | 0.587980 | 4_3:-65948568 | None:intergenic |
| TCAACACTTCCATTAATCCG+TGG | 0.590723 | 4_3:+65946226 | Msa0656590:CDS |
| ATTCCTCAGGCACCTCGTGA+AGG | 0.595702 | 4_3:+65946616 | Msa0656590:CDS |
| AACTTGGAGAAATATAATGA+AGG | 0.596815 | 4_3:-65949358 | None:intergenic |
| GTAATAATATCTTTGAATCG+AGG | 0.598480 | 4_3:-65947034 | None:intergenic |
| TCGACAAAATTGTACCGCGA+TGG | 0.598932 | 4_3:+65948123 | Msa0656590:CDS |
| TCCATAAGCTGTTCTCTAGG+AGG | 0.599001 | 4_3:-65948582 | None:intergenic |
| GAGTATATACGTAACCAACT+TGG | 0.600741 | 4_3:-65949374 | None:intergenic |
| CTATAAGAGCCTCAATGTAG+TGG | 0.601895 | 4_3:+65949131 | Msa0656590:CDS |
| TTGTGCAGAATAATATCTTG+TGG | 0.604851 | 4_3:+65946993 | Msa0656590:CDS |
| GGTACTGATTGAAAACCTCA+TGG | 0.605597 | 4_3:+65947610 | Msa0656590:CDS |
| TCTTCAATTGAGAAATCAAG+TGG | 0.606160 | 4_3:-65947802 | None:intergenic |
| GGTGATCAAGTTGATTGGAG+AGG | 0.612421 | 4_3:+65948531 | Msa0656590:CDS |
| TCTTATAAATATAGGACCGG+AGG | 0.619038 | 4_3:-65949397 | None:intergenic |
| GGGATAGAAATGAGAATGCA+TGG | 0.630522 | 4_3:+65946467 | Msa0656590:CDS |
| CTTATAAATATAGGACCGGA+GGG | 0.631261 | 4_3:-65949396 | None:intergenic |
| TGTGCATATGGAACATGTGA+AGG | 0.634120 | 4_3:-65947635 | None:intergenic |
| GGTCCTTCACGAGGTGCCTG+AGG | 0.637367 | 4_3:-65946619 | None:intergenic |
| GGTTACGTATATACTCCCTC+CGG | 0.637376 | 4_3:+65949381 | Msa0656590:CDS |
| GAACAGGTACTGGAGCCATA+CGG | 0.641416 | 4_3:+65949083 | Msa0656590:intron |
| TAAAAGGAATTACCTCAACA+TGG | 0.650469 | 4_3:-65948196 | None:intergenic |
| TCAATTTCTGGTATGAATGG+GGG | 0.651927 | 4_3:-65947067 | None:intergenic |
| GCATCACTTCCACTACATTG+AGG | 0.655047 | 4_3:-65949140 | None:intergenic |
| AACATGCAATTTCAGGTACG+AGG | 0.660550 | 4_3:+65947589 | Msa0656590:intron |
| GCTAGTGGGATGTGAAGTGA+AGG | 0.662430 | 4_3:-65946148 | None:intergenic |
| GTGCATATGGAACATGTGAA+GGG | 0.665250 | 4_3:-65947634 | None:intergenic |
| TGTTAATGGAGAAGGTGACA+AGG | 0.682450 | 4_3:-65946278 | None:intergenic |
| ATTGTTGCTGCAATGAAGCA+GGG | 0.683050 | 4_3:+65949192 | Msa0656590:CDS |
| CCGCGATGGATTCTTCATGT+GGG | 0.687009 | 4_3:+65948137 | Msa0656590:CDS |
| GAACATGTGAAGGGTCCATG+AGG | 0.693173 | 4_3:-65947625 | None:intergenic |
| AATTTGACTGGTACTCACAG+TGG | 0.710936 | 4_3:+65946362 | Msa0656590:CDS |
| GTTACCGGAGGTCCTTCACG+AGG | 0.730118 | 4_3:-65946628 | None:intergenic |
| CCCACATGAAGAATCCATCG+CGG | 0.771717 | 4_3:-65948137 | None:intergenic |
| GAAGGAAGGATTGATCAATG+GGG | 0.799393 | 4_3:+65946535 | Msa0656590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTGACAATATTATA+CGG | + | chr4_3:65947505-65947524 | Msa0656590:intron | 10.0% |
| !!! | AAAAACATGGATTTTTTTAA+TGG | - | chr4_3:65946190-65946209 | None:intergenic | 15.0% |
| !!! | AAAAATGTTTGTTACTTAAA+GGG | + | chr4_3:65946688-65946707 | Msa0656590:intron | 15.0% |
| !! | ATAATTAAAATGTAGTTGTT+TGG | - | chr4_3:65947468-65947487 | None:intergenic | 15.0% |
| !!! | ACAACTACATTTTAATTATA+CGG | + | chr4_3:65947469-65947488 | Msa0656590:intron | 15.0% |
| !!! | GTATTTTTTTTCAATAGATT+AGG | + | chr4_3:65948367-65948386 | Msa0656590:intron | 15.0% |
| !!! | TTTTTAGGAACAAAAAATAA+TGG | + | chr4_3:65948413-65948432 | Msa0656590:intron | 15.0% |
| !! | AAAAACTTCACATATATTAA+AGG | - | chr4_3:65948687-65948706 | None:intergenic | 15.0% |
| !! | AGAAATTATTAAATTTGAAC+AGG | + | chr4_3:65949067-65949086 | Msa0656590:intron | 15.0% |
| !!! | GAAAAATGTTTGTTACTTAA+AGG | + | chr4_3:65946687-65946706 | Msa0656590:intron | 20.0% |
| !!! | TTAACACTAAATTGCATTTT+TGG | - | chr4_3:65946774-65946793 | None:intergenic | 20.0% |
| !! | TGCAATTTAGTGTTAAAAAA+TGG | + | chr4_3:65946778-65946797 | Msa0656590:intron | 20.0% |
| !! | GATTCAAAGATATTATTACA+AGG | + | chr4_3:65947038-65947057 | Msa0656590:CDS | 20.0% |
| !! | AAATTAAAATCATACCCATA+AGG | - | chr4_3:65947133-65947152 | None:intergenic | 20.0% |
| !!! | TGATATAATTATTGATGATC+TGG | + | chr4_3:65947242-65947261 | Msa0656590:intron | 20.0% |
| !! | GAAAGATATACTATTATGTT+AGG | - | chr4_3:65947559-65947578 | None:intergenic | 20.0% |
| !! | CTATATAAATAAAAGATGCT+TGG | - | chr4_3:65947886-65947905 | None:intergenic | 20.0% |
| !! | ACTAATCTGTGAATTATAAA+AGG | - | chr4_3:65948215-65948234 | None:intergenic | 20.0% |
| !!! | TTCCTCAATAAACTATTTTT+AGG | + | chr4_3:65948398-65948417 | Msa0656590:intron | 20.0% |
| !! | TTCCTAAAAATAGTTTATTG+AGG | - | chr4_3:65948403-65948422 | None:intergenic | 20.0% |
| !!! | TTTTACACTTGAAAATCTAT+TGG | - | chr4_3:65948742-65948761 | None:intergenic | 20.0% |
| !! | TATAATAAGTTATCCAAGAA+AGG | - | chr4_3:65948922-65948941 | None:intergenic | 20.0% |
| !! | ATAATTTCTAATCAAGAACA+TGG | - | chr4_3:65949056-65949075 | None:intergenic | 20.0% |
| !! | CAAATGTCTCTTATAAATAT+AGG | - | chr4_3:65949408-65949427 | None:intergenic | 20.0% |
| !!! | CAACTTCTCTCTTTTATTTT+TGG | + | chr4_3:65945941-65945960 | Msa0656590:five_prime_UTR | 25.0% |
| ! | TTTAAGAGAAGTTGAAACTT+GGG | - | chr4_3:65946034-65946053 | None:intergenic | 25.0% |
| ! | ATTTAAGAGAAGTTGAAACT+TGG | - | chr4_3:65946035-65946054 | None:intergenic | 25.0% |
| ! | AATATGTGATCTTGACAAAA+GGG | + | chr4_3:65946399-65946418 | Msa0656590:CDS | 25.0% |
| ! | AATTGATGTTGTTATATGGT+GGG | + | chr4_3:65946447-65946466 | Msa0656590:CDS | 25.0% |
| !! | CAAACATTTTTCTTCAAAGA+CGG | - | chr4_3:65946679-65946698 | None:intergenic | 25.0% |
| !! | AATGTGTAACAATTTGCTTT+AGG | + | chr4_3:65946817-65946836 | Msa0656590:intron | 25.0% |
| !! | ATGTGTAACAATTTGCTTTA+GGG | + | chr4_3:65946818-65946837 | Msa0656590:intron | 25.0% |
| ! | CATGATAACAAAACAAACAA+TGG | - | chr4_3:65946891-65946910 | None:intergenic | 25.0% |
| ! | AGTTTATGCAAAAGTAAATG+AGG | - | chr4_3:65946918-65946937 | None:intergenic | 25.0% |
| !! | AGAATAATATCTTGTGGTTT+TGG | + | chr4_3:65946999-65947018 | Msa0656590:CDS | 25.0% |
| ! | GTAATAATATCTTTGAATCG+AGG | - | chr4_3:65947037-65947056 | None:intergenic | 25.0% |
| !!! | GCTTAATGTAATTGTTTTAG+TGG | + | chr4_3:65947211-65947230 | Msa0656590:intron | 25.0% |
| !!! | AATTATTGATGATCTGGTTT+TGG | + | chr4_3:65947248-65947267 | Msa0656590:intron | 25.0% |
| ! | AAAAATGCTATAAACTCATG+AGG | + | chr4_3:65947431-65947450 | Msa0656590:intron | 25.0% |
| ! | TTAATTGAACATGCAATTTC+AGG | + | chr4_3:65947582-65947601 | Msa0656590:intron | 25.0% |
| !! | TGTATATATGTCTACCTTTT+GGG | - | chr4_3:65947679-65947698 | None:intergenic | 25.0% |
| !! | ATGTATATATGTCTACCTTT+TGG | - | chr4_3:65947680-65947699 | None:intergenic | 25.0% |
| ! | GTGTCATATATGAAACAAAT+AGG | - | chr4_3:65947731-65947750 | None:intergenic | 25.0% |
| ! | ATTGAAGAGTTAGATATCAA+TGG | + | chr4_3:65947817-65947836 | Msa0656590:CDS | 25.0% |
| ! | TATAAATAAAAGATGCTTGG+TGG | - | chr4_3:65947883-65947902 | None:intergenic | 25.0% |
| !!! | ATTTGCACTCAGTTTTATAT+AGG | + | chr4_3:65947968-65947987 | Msa0656590:intron | 25.0% |
| !! | TAATTCACAGATTAGTTATC+CGG | + | chr4_3:65948219-65948238 | Msa0656590:intron | 25.0% |
| !! | GTTTACTTTATTTGATCAAC+CGG | - | chr4_3:65948241-65948260 | None:intergenic | 25.0% |
| ! | ACAATATCAAATTCAATCAC+TGG | + | chr4_3:65948345-65948364 | Msa0656590:intron | 25.0% |
| !!! | TTGTGATTGGTTTTAGAAAA+TGG | + | chr4_3:65948493-65948512 | Msa0656590:CDS | 25.0% |
| !!! | AAATGGTTAAAGAAGTATTC+AGG | + | chr4_3:65948510-65948529 | Msa0656590:CDS | 25.0% |
| ! | TAACTCACATAAGATTGAAT+TGG | + | chr4_3:65948613-65948632 | Msa0656590:intron | 25.0% |
| !! | TGCTAAAAATTTGTTCTATC+TGG | + | chr4_3:65948778-65948797 | Msa0656590:intron | 25.0% |
| !! | ACTTATTTGAGTTTGTTTAG+TGG | + | chr4_3:65948805-65948824 | Msa0656590:intron | 25.0% |
| !! | AATACGCTGAAAACATATTT+TGG | - | chr4_3:65948892-65948911 | None:intergenic | 25.0% |
| ! | TATTAAATTTGAACAGGTAC+TGG | + | chr4_3:65949073-65949092 | Msa0656590:intron | 25.0% |
| ! | AACTTGGAGAAATATAATGA+AGG | - | chr4_3:65949361-65949380 | None:intergenic | 25.0% |
| ! | TTCATTATATTTCTCCAAGT+TGG | + | chr4_3:65949360-65949379 | Msa0656590:CDS | 25.0% |
| TGAAACTTGGGAACAATTAT+TGG | - | chr4_3:65946022-65946041 | None:intergenic | 30.0% | |
| ! | TCACTTTCTTCTTTTGTACA+AGG | + | chr4_3:65946093-65946112 | Msa0656590:five_prime_UTR | 30.0% |
| ! | CACTTTCTTCTTTTGTACAA+GGG | + | chr4_3:65946094-65946113 | Msa0656590:five_prime_UTR | 30.0% |
| ! | TTTGTGTTTTATGTGCTAGT+GGG | - | chr4_3:65946165-65946184 | None:intergenic | 30.0% |
| ! | CAATTGTGAGTTGAAAAACA+TGG | - | chr4_3:65946203-65946222 | None:intergenic | 30.0% |
| ! | CTTTTGTCAAGATCACATAT+TGG | - | chr4_3:65946400-65946419 | None:intergenic | 30.0% |
| CAATATGTGATCTTGACAAA+AGG | + | chr4_3:65946398-65946417 | Msa0656590:CDS | 30.0% | |
| TGGGAATTGATGTTGTTATA+TGG | + | chr4_3:65946443-65946462 | Msa0656590:CDS | 30.0% | |
| GAATTGATGTTGTTATATGG+TGG | + | chr4_3:65946446-65946465 | Msa0656590:CDS | 30.0% | |
| !! | TATCATGGTTGGTGTTTTAA+TGG | + | chr4_3:65946574-65946593 | Msa0656590:CDS | 30.0% |
| CGAAACCCAAAATTAGTTAA+GGG | + | chr4_3:65946747-65946766 | Msa0656590:intron | 30.0% | |
| ! | TTGGTCCCTTAACTAATTTT+GGG | - | chr4_3:65946755-65946774 | None:intergenic | 30.0% |
| ! | TTTGGTCCCTTAACTAATTT+TGG | - | chr4_3:65946756-65946775 | None:intergenic | 30.0% |
| ATATTATTCTGCACAATGCT+TGG | - | chr4_3:65946989-65947008 | None:intergenic | 30.0% | |
| TTGTGCAGAATAATATCTTG+TGG | + | chr4_3:65946993-65947012 | Msa0656590:CDS | 30.0% | |
| !! | ATCAATTTCTGGTATGAATG+GGG | - | chr4_3:65947071-65947090 | None:intergenic | 30.0% |
| !! | CATCAATTTCTGGTATGAAT+GGG | - | chr4_3:65947072-65947091 | None:intergenic | 30.0% |
| !! | TCATCAATTTCTGGTATGAA+TGG | - | chr4_3:65947073-65947092 | None:intergenic | 30.0% |
| !! | AATGATGGATCATCAATTTC+TGG | - | chr4_3:65947082-65947101 | None:intergenic | 30.0% |
| GAAACAGAGATATTCCTTAT+GGG | + | chr4_3:65947116-65947135 | Msa0656590:CDS | 30.0% | |
| AAATCCAACACATATGCATA+TGG | + | chr4_3:65947184-65947203 | Msa0656590:intron | 30.0% | |
| AGCATGCAAATTATGCTATA+GGG | - | chr4_3:65947322-65947341 | None:intergenic | 30.0% | |
| TAGCATGCAAATTATGCTAT+AGG | - | chr4_3:65947323-65947342 | None:intergenic | 30.0% | |
| AGTCATATAAGCTAACTGTT+TGG | + | chr4_3:65947528-65947547 | Msa0656590:intron | 30.0% | |
| TCTTCAATTGAGAAATCAAG+TGG | - | chr4_3:65947805-65947824 | None:intergenic | 30.0% | |
| CATAGAAAATTTCTTCCGAA+CGG | - | chr4_3:65948027-65948046 | None:intergenic | 30.0% | |
| TTTATATCTTCTCCATGTTG+AGG | + | chr4_3:65948184-65948203 | Msa0656590:CDS | 30.0% | |
| TAAAAGGAATTACCTCAACA+TGG | - | chr4_3:65948199-65948218 | None:intergenic | 30.0% | |
| !! | GAACAAAAAATAATGGATGC+TGG | + | chr4_3:65948420-65948439 | Msa0656590:CDS | 30.0% |
| CATAAGATTGAATTGGAACA+TGG | + | chr4_3:65948620-65948639 | Msa0656590:intron | 30.0% | |
| !! | ACATATTTTGGACATGTCAT+AGG | - | chr4_3:65948880-65948899 | None:intergenic | 30.0% |
| TGTTGCATTTAGACTATGTT+TGG | - | chr4_3:65949023-65949042 | None:intergenic | 30.0% | |
| AAACATAGTCTAAATGCAAC+AGG | + | chr4_3:65949022-65949041 | Msa0656590:intron | 30.0% | |
| ATCATATCAGTTGCTTCAAT+TGG | + | chr4_3:65949168-65949187 | Msa0656590:CDS | 30.0% | |
| TCATATCAGTTGCTTCAATT+GGG | + | chr4_3:65949169-65949188 | Msa0656590:CDS | 30.0% | |
| AAGAAATTCTATAGTTGTGC+TGG | + | chr4_3:65949233-65949252 | Msa0656590:CDS | 30.0% | |
| GTCTCTTATAAATATAGGAC+CGG | - | chr4_3:65949403-65949422 | None:intergenic | 30.0% | |
| TTTATAAGAGACATTTGAGC+CGG | + | chr4_3:65949411-65949430 | Msa0656590:exon | 30.0% | |
| TCATACACATCAATTTATGC+CGG | - | chr4_3:65949433-65949452 | None:intergenic | 30.0% | |
| ! | TCTTTTGTACAAGGGAACAA+TGG | + | chr4_3:65946102-65946121 | Msa0656590:exon | 35.0% |
| ! | GTTTGTGTTTTATGTGCTAG+TGG | - | chr4_3:65946166-65946185 | None:intergenic | 35.0% |
| !!! | TGAATTTTGAAGTGTTCCCA+CGG | - | chr4_3:65946246-65946265 | None:intergenic | 35.0% |
| CTACTACTGGAATCTGTTAA+TGG | - | chr4_3:65946295-65946314 | None:intergenic | 35.0% | |
| ! | TCTGAACTTGTTTCAACTTC+TGG | - | chr4_3:65946340-65946359 | None:intergenic | 35.0% |
| CAAGTTCAGAGAAATTTGAC+TGG | + | chr4_3:65946350-65946369 | Msa0656590:CDS | 35.0% | |
| AGATCACATATTGGCATCAA+AGG | - | chr4_3:65946391-65946410 | None:intergenic | 35.0% | |
| !! | GATAAAGGTGCTAATCTATG+AGG | - | chr4_3:65946514-65946533 | None:intergenic | 35.0% |
| AGATTAGCACCTTTATCTGA+AGG | + | chr4_3:65946517-65946536 | Msa0656590:CDS | 35.0% | |
| TCAATCCTTCCTTCAGATAA+AGG | - | chr4_3:65946529-65946548 | None:intergenic | 35.0% | |
| TGAAGGAAGGATTGATCAAT+GGG | + | chr4_3:65946534-65946553 | Msa0656590:CDS | 35.0% | |
| ! | ACATTTTTCTTCAAAGACGG+CGG | - | chr4_3:65946676-65946695 | None:intergenic | 35.0% |
| ACATCTGTTTCGTTTCACTT+TGG | - | chr4_3:65946715-65946734 | None:intergenic | 35.0% | |
| GTGAAACGAAACAGATGTAA+AGG | + | chr4_3:65946717-65946736 | Msa0656590:intron | 35.0% | |
| !!! | ACTAATTTTGGGTTTCGCTT+TGG | - | chr4_3:65946744-65946763 | None:intergenic | 35.0% |
| GCGAAACCCAAAATTAGTTA+AGG | + | chr4_3:65946746-65946765 | Msa0656590:intron | 35.0% | |
| TTTACACTGCAACACATCTA+TGG | - | chr4_3:65946859-65946878 | None:intergenic | 35.0% | |
| TTGAATCGAGGATCAGTATT+TGG | - | chr4_3:65947025-65947044 | None:intergenic | 35.0% | |
| !! | TCAATTTCTGGTATGAATGG+GGG | - | chr4_3:65947070-65947089 | None:intergenic | 35.0% |
| ! | TCCATCATTTGCTAGCTTAA+TGG | + | chr4_3:65947093-65947112 | Msa0656590:CDS | 35.0% |
| ! | CCATCATTTGCTAGCTTAAT+GGG | + | chr4_3:65947094-65947113 | Msa0656590:CDS | 35.0% |
| GGAAACAGAGATATTCCTTA+TGG | + | chr4_3:65947115-65947134 | Msa0656590:CDS | 35.0% | |
| TATGCCATATGCATATGTGT+TGG | - | chr4_3:65947191-65947210 | None:intergenic | 35.0% | |
| GTTAATCCATAGTGTGCATA+TGG | - | chr4_3:65947650-65947669 | None:intergenic | 35.0% | |
| GTGAATAATGCTGATAGAGA+AGG | + | chr4_3:65947772-65947791 | Msa0656590:intron | 35.0% | |
| AATAATGCTGATAGAGAAGG+AGG | + | chr4_3:65947775-65947794 | Msa0656590:CDS | 35.0% | |
| AATGGTTTCACTGCAAATCA+GGG | + | chr4_3:65947835-65947854 | Msa0656590:CDS | 35.0% | |
| TGCATCTTCTGTTGAAACTA+AGG | + | chr4_3:65947921-65947940 | Msa0656590:CDS | 35.0% | |
| TAATGCAGAAATCATCCGTT+CGG | + | chr4_3:65948009-65948028 | Msa0656590:intron | 35.0% | |
| CAAATCAGTCTACTATTACC+AGG | - | chr4_3:65948074-65948093 | None:intergenic | 35.0% | |
| CTGGTAATAGTAGACTGATT+TGG | + | chr4_3:65948072-65948091 | Msa0656590:CDS | 35.0% | |
| AACCATCACACTTACAGATT+TGG | + | chr4_3:65948258-65948277 | Msa0656590:intron | 35.0% | |
| ACCATCACACTTACAGATTT+GGG | + | chr4_3:65948259-65948278 | Msa0656590:intron | 35.0% | |
| AGTTATGCTGTCGTAGATAA+TGG | + | chr4_3:65948282-65948301 | Msa0656590:intron | 35.0% | |
| TGGTCAAGAAAATTGGCATA+AGG | + | chr4_3:65948440-65948459 | Msa0656590:CDS | 35.0% | |
| !! | ATTCAGGTGATCAAGTTGAT+TGG | + | chr4_3:65948526-65948545 | Msa0656590:CDS | 35.0% |
| GATTGGAGAGGAAAATATAG+TGG | + | chr4_3:65948543-65948562 | Msa0656590:CDS | 35.0% | |
| TTAGTGGCATAAACACTTGT+AGG | + | chr4_3:65948821-65948840 | Msa0656590:intron | 35.0% | |
| AAGTTATCCAAGAAAGGTTG+TGG | - | chr4_3:65948916-65948935 | None:intergenic | 35.0% | |
| GAGTATATACGTAACCAACT+TGG | - | chr4_3:65949377-65949396 | None:intergenic | 35.0% | |
| CTTATAAATATAGGACCGGA+GGG | - | chr4_3:65949399-65949418 | None:intergenic | 35.0% | |
| TCTTATAAATATAGGACCGG+AGG | - | chr4_3:65949400-65949419 | None:intergenic | 35.0% | |
| TGTTTAGCACTCCAATTCCT+AGG | + | chr4_3:65945971-65945990 | Msa0656590:five_prime_UTR | 40.0% | |
| GTTTAGCACTCCAATTCCTA+GGG | + | chr4_3:65945972-65945991 | Msa0656590:five_prime_UTR | 40.0% | |
| AACTTCGTTTCCCTAGGAAT+TGG | - | chr4_3:65945985-65946004 | None:intergenic | 40.0% | |
| ATTCCTAGGGAAACGAAGTT+CGG | + | chr4_3:65945985-65946004 | Msa0656590:five_prime_UTR | 40.0% | |
| TCAACACTTCCATTAATCCG+TGG | + | chr4_3:65946226-65946245 | Msa0656590:CDS | 40.0% | |
| CAACACTTCCATTAATCCGT+GGG | + | chr4_3:65946227-65946246 | Msa0656590:CDS | 40.0% | |
| TGTTAATGGAGAAGGTGACA+AGG | - | chr4_3:65946281-65946300 | None:intergenic | 40.0% | |
| CTGGAATCTGTTAATGGAGA+AGG | - | chr4_3:65946289-65946308 | None:intergenic | 40.0% | |
| CACTTGAAGGTTACTACTAC+TGG | - | chr4_3:65946308-65946327 | None:intergenic | 40.0% | |
| CAGTAGTAGTAACCTTCAAG+TGG | + | chr4_3:65946306-65946325 | Msa0656590:CDS | 40.0% | |
| AATTTGACTGGTACTCACAG+TGG | + | chr4_3:65946362-65946381 | Msa0656590:CDS | 40.0% | |
| ACCTCATGCTAAGAAAGTGA+TGG | + | chr4_3:65946423-65946442 | Msa0656590:CDS | 40.0% | |
| CCTCATGCTAAGAAAGTGAT+GGG | + | chr4_3:65946424-65946443 | Msa0656590:CDS | 40.0% | |
| GGGATAGAAATGAGAATGCA+TGG | + | chr4_3:65946467-65946486 | Msa0656590:CDS | 40.0% | |
| TAGCACCTTTATCTGAAGGA+AGG | + | chr4_3:65946521-65946540 | Msa0656590:CDS | 40.0% | |
| CTGAAGGAAGGATTGATCAA+TGG | + | chr4_3:65946533-65946552 | Msa0656590:CDS | 40.0% | |
| GAAGGAAGGATTGATCAATG+GGG | + | chr4_3:65946535-65946554 | Msa0656590:CDS | 40.0% | |
| AGGTTACAGTGTGTGTATCA+TGG | + | chr4_3:65946559-65946578 | Msa0656590:CDS | 40.0% | |
| TACAGTGTGTGTATCATGGT+TGG | + | chr4_3:65946563-65946582 | Msa0656590:CDS | 40.0% | |
| !!! | GGTTGGTGTTTTAATGGATC+AGG | + | chr4_3:65946580-65946599 | Msa0656590:CDS | 40.0% |
| TGATTGCAAGTTCATTCCTC+AGG | + | chr4_3:65946603-65946622 | Msa0656590:CDS | 40.0% | |
| !! | GTATCAGAAGGACTAGTTAC+CGG | - | chr4_3:65946646-65946665 | None:intergenic | 40.0% |
| !! | GGCGGTTAAAAAGTATCAGA+AGG | - | chr4_3:65946658-65946677 | None:intergenic | 40.0% |
| !!! | AGCAGCTACACATGCTTTTT+TGG | - | chr4_3:65946963-65946982 | None:intergenic | 40.0% |
| CCCATTAAGCTAGCAAATGA+TGG | - | chr4_3:65947097-65947116 | None:intergenic | 40.0% | |
| GCATGCTATGCTACTATTCT+AGG | + | chr4_3:65947335-65947354 | Msa0656590:intron | 40.0% | |
| ! | AACATGCAATTTCAGGTACG+AGG | + | chr4_3:65947589-65947608 | Msa0656590:intron | 40.0% |
| !! | GGTACTGATTGAAAACCTCA+TGG | + | chr4_3:65947610-65947629 | Msa0656590:CDS | 40.0% |
| GTGCATATGGAACATGTGAA+GGG | - | chr4_3:65947637-65947656 | None:intergenic | 40.0% | |
| TGTGCATATGGAACATGTGA+AGG | - | chr4_3:65947638-65947657 | None:intergenic | 40.0% | |
| CATGTTCCATATGCACACTA+TGG | + | chr4_3:65947641-65947660 | Msa0656590:CDS | 40.0% | |
| !! | ATATGTCTACCTTTTGGGTC+TGG | - | chr4_3:65947674-65947693 | None:intergenic | 40.0% |
| CAATGGTTTCACTGCAAATC+AGG | + | chr4_3:65947834-65947853 | Msa0656590:CDS | 40.0% | |
| ACAGAAGATGCAAGTTCATC+TGG | - | chr4_3:65947913-65947932 | None:intergenic | 40.0% | |
| ATTTGTATTCCTGTGAGTCC+TGG | + | chr4_3:65948053-65948072 | Msa0656590:CDS | 40.0% | |
| ! | TGGTGCTTTCCGAGAAATTT+TGG | + | chr4_3:65948092-65948111 | Msa0656590:CDS | 40.0% |
| ! | TTCCGAGAAATTTTGGACTG+TGG | + | chr4_3:65948099-65948118 | Msa0656590:CDS | 40.0% |
| ! | TCCGAGAAATTTTGGACTGT+GGG | + | chr4_3:65948100-65948119 | Msa0656590:CDS | 40.0% |
| ACCCACAGTCCAAAATTTCT+CGG | - | chr4_3:65948104-65948123 | None:intergenic | 40.0% | |
| TCCCAAATCTGTAAGTGTGA+TGG | - | chr4_3:65948263-65948282 | None:intergenic | 40.0% | |
| TGGATGCTGGTCAAGAAAAT+TGG | + | chr4_3:65948433-65948452 | Msa0656590:CDS | 40.0% | |
| TGCCTTTGTTGGCATAAAAC+AGG | - | chr4_3:65948466-65948485 | None:intergenic | 40.0% | |
| ! | TGTAGGTTGTGAGACTGTTT+TGG | + | chr4_3:65948838-65948857 | Msa0656590:intron | 40.0% |
| CGTATTTCCACAACCTTTCT+TGG | + | chr4_3:65948906-65948925 | Msa0656590:intron | 40.0% | |
| AACTCTTGCAATTCACCGTA+TGG | - | chr4_3:65949101-65949120 | None:intergenic | 40.0% | |
| CACTACATTGAGGCTCTTAT+AGG | - | chr4_3:65949133-65949152 | None:intergenic | 40.0% | |
| CTATAAGAGCCTCAATGTAG+TGG | + | chr4_3:65949131-65949150 | Msa0656590:CDS | 40.0% | |
| ATTGTTGCTGCAATGAAGCA+GGG | + | chr4_3:65949192-65949211 | Msa0656590:CDS | 40.0% | |
| TACTTTCATTCGCATTGTCG+CGG | + | chr4_3:65949259-65949278 | Msa0656590:CDS | 40.0% | |
| ! | ATTTCATCGAAGAGCGTACA+TGG | - | chr4_3:65949332-65949351 | None:intergenic | 40.0% |
| ! | GAAGTGTTCCCACGGATTAA+TGG | - | chr4_3:65946238-65946257 | None:intergenic | 45.0% |
| CTGGTTCATCATCCACTTGA+AGG | - | chr4_3:65946321-65946340 | None:intergenic | 45.0% | |
| CCCATCACTTTCTTAGCATG+AGG | - | chr4_3:65946427-65946446 | None:intergenic | 45.0% | |
| GAAGGATTGATCAATGGGGT+AGG | + | chr4_3:65946539-65946558 | Msa0656590:CDS | 45.0% | |
| GGATTAACTCCAGACCCAAA+AGG | + | chr4_3:65947662-65947681 | Msa0656590:CDS | 45.0% | |
| GTTTCACTGCAAATCAGGGT+TGG | + | chr4_3:65947839-65947858 | Msa0656590:CDS | 45.0% | |
| CTACTATTACCAGGACTCAC+AGG | - | chr4_3:65948065-65948084 | None:intergenic | 45.0% | |
| TCGACAAAATTGTACCGCGA+TGG | + | chr4_3:65948123-65948142 | Msa0656590:CDS | 45.0% | |
| ! | GGCCTGTTTTATGCCAACAA+AGG | + | chr4_3:65948461-65948480 | Msa0656590:CDS | 45.0% |
| !! | ACAAGAGCATCTGCCTTTGT+TGG | - | chr4_3:65948477-65948496 | None:intergenic | 45.0% |
| AAGGCAGATGCTCTTGTGAT+TGG | + | chr4_3:65948480-65948499 | Msa0656590:CDS | 45.0% | |
| !! | GGTGATCAAGTTGATTGGAG+AGG | + | chr4_3:65948531-65948550 | Msa0656590:CDS | 45.0% |
| ACCTCCTAGAGAACAGCTTA+TGG | + | chr4_3:65948581-65948600 | Msa0656590:CDS | 45.0% | |
| TCCATAAGCTGTTCTCTAGG+AGG | - | chr4_3:65948585-65948604 | None:intergenic | 45.0% | |
| CTGTCCATAAGCTGTTCTCT+AGG | - | chr4_3:65948588-65948607 | None:intergenic | 45.0% | |
| CTAGAGAACAGCTTATGGAC+AGG | + | chr4_3:65948586-65948605 | Msa0656590:CDS | 45.0% | |
| AGAACAGCTTATGGACAGGT+AGG | + | chr4_3:65948590-65948609 | Msa0656590:intron | 45.0% | |
| GCATCACTTCCACTACATTG+AGG | - | chr4_3:65949143-65949162 | None:intergenic | 45.0% | |
| GATTGTTGCTGCAATGAAGC+AGG | + | chr4_3:65949191-65949210 | Msa0656590:CDS | 45.0% | |
| GGTTACGTATATACTCCCTC+CGG | + | chr4_3:65949381-65949400 | Msa0656590:CDS | 45.0% | |
| TGACCGAACTTCGTTTCCCT+AGG | - | chr4_3:65945991-65946010 | None:intergenic | 50.0% | |
| TAGGGAAACGAAGTTCGGTC+AGG | + | chr4_3:65945990-65946009 | Msa0656590:five_prime_UTR | 50.0% | |
| GCTAGTGGGATGTGAAGTGA+AGG | - | chr4_3:65946151-65946170 | None:intergenic | 50.0% | |
| !! | TCAGAAGGACTAGTTACCGG+AGG | - | chr4_3:65946643-65946662 | None:intergenic | 50.0% |
| GAACATGTGAAGGGTCCATG+AGG | - | chr4_3:65947628-65947647 | None:intergenic | 50.0% | |
| ! | ACCGCGATGGATTCTTCATG+TGG | + | chr4_3:65948136-65948155 | Msa0656590:CDS | 50.0% |
| CCCACATGAAGAATCCATCG+CGG | - | chr4_3:65948140-65948159 | None:intergenic | 50.0% | |
| ! | CCGCGATGGATTCTTCATGT+GGG | + | chr4_3:65948137-65948156 | Msa0656590:CDS | 50.0% |
| ! | TCTAGGAGGTGTAGGAGGAA+GGG | - | chr4_3:65948571-65948590 | None:intergenic | 50.0% |
| ! | TGTTCTCTAGGAGGTGTAGG+AGG | - | chr4_3:65948576-65948595 | None:intergenic | 50.0% |
| ! | AGCTGTTCTCTAGGAGGTGT+AGG | - | chr4_3:65948579-65948598 | None:intergenic | 50.0% |
| !! | GAACAGGTACTGGAGCCATA+CGG | + | chr4_3:65949083-65949102 | Msa0656590:intron | 50.0% |
| TGCTGCAATGAAGCAGGGAA+TGG | + | chr4_3:65949197-65949216 | Msa0656590:CDS | 50.0% | |
| AACGAAGTTCGGTCAGGAGC+TGG | + | chr4_3:65945996-65946015 | Msa0656590:five_prime_UTR | 55.0% | |
| ATTCCTCAGGCACCTCGTGA+AGG | + | chr4_3:65946616-65946635 | Msa0656590:CDS | 55.0% | |
| ! | CTCTAGGAGGTGTAGGAGGA+AGG | - | chr4_3:65948572-65948591 | None:intergenic | 55.0% |
| GTTACCGGAGGTCCTTCACG+AGG | - | chr4_3:65946631-65946650 | None:intergenic | 60.0% | |
| ! | GGTCCTTCACGAGGTGCCTG+AGG | - | chr4_3:65946622-65946641 | None:intergenic | 65.0% |
| GGCACCTCGTGAAGGACCTC+CGG | + | chr4_3:65946624-65946643 | Msa0656590:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 65945917 | 65949480 | 65945917 | ID=Msa0656590;Name=Msa0656590 |
| chr4_3 | mRNA | 65945917 | 65949480 | 65945917 | ID=Msa0656590-mRNA-1;Parent=Msa0656590;Name=Msa0656590-mRNA-1;_AED=0.32;_eAED=0.32;_QI=204|1|1|1|1|1|7|52|559 |
| chr4_3 | exon | 65945917 | 65946645 | 65945917 | ID=Msa0656590-mRNA-1:exon:18808;Parent=Msa0656590-mRNA-1 |
| chr4_3 | exon | 65946950 | 65947137 | 65946950 | ID=Msa0656590-mRNA-1:exon:18809;Parent=Msa0656590-mRNA-1 |
| chr4_3 | exon | 65947604 | 65947683 | 65947604 | ID=Msa0656590-mRNA-1:exon:18810;Parent=Msa0656590-mRNA-1 |
| chr4_3 | exon | 65947773 | 65947942 | 65947773 | ID=Msa0656590-mRNA-1:exon:18811;Parent=Msa0656590-mRNA-1 |
| chr4_3 | exon | 65948017 | 65948205 | 65948017 | ID=Msa0656590-mRNA-1:exon:18812;Parent=Msa0656590-mRNA-1 |
| chr4_3 | exon | 65948420 | 65948607 | 65948420 | ID=Msa0656590-mRNA-1:exon:18813;Parent=Msa0656590-mRNA-1 |
| chr4_3 | exon | 65949089 | 65949480 | 65949089 | ID=Msa0656590-mRNA-1:exon:18814;Parent=Msa0656590-mRNA-1 |
| chr4_3 | five_prime_UTR | 65945917 | 65946120 | 65945917 | ID=Msa0656590-mRNA-1:five_prime_utr;Parent=Msa0656590-mRNA-1 |
| chr4_3 | CDS | 65946121 | 65946645 | 65946121 | ID=Msa0656590-mRNA-1:cds;Parent=Msa0656590-mRNA-1 |
| chr4_3 | CDS | 65946950 | 65947137 | 65946950 | ID=Msa0656590-mRNA-1:cds;Parent=Msa0656590-mRNA-1 |
| chr4_3 | CDS | 65947604 | 65947683 | 65947604 | ID=Msa0656590-mRNA-1:cds;Parent=Msa0656590-mRNA-1 |
| chr4_3 | CDS | 65947773 | 65947942 | 65947773 | ID=Msa0656590-mRNA-1:cds;Parent=Msa0656590-mRNA-1 |
| chr4_3 | CDS | 65948017 | 65948205 | 65948017 | ID=Msa0656590-mRNA-1:cds;Parent=Msa0656590-mRNA-1 |
| chr4_3 | CDS | 65948420 | 65948607 | 65948420 | ID=Msa0656590-mRNA-1:cds;Parent=Msa0656590-mRNA-1 |
| chr4_3 | CDS | 65949089 | 65949428 | 65949089 | ID=Msa0656590-mRNA-1:cds;Parent=Msa0656590-mRNA-1 |
| chr4_3 | three_prime_UTR | 65949429 | 65949480 | 65949429 | ID=Msa0656590-mRNA-1:three_prime_utr;Parent=Msa0656590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
