Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659480 | XP_003630314.1 | 92.560 | 336 | 20 | 2 | 1 | 335 | 1 | 332 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659480 | G7LEY0 | 92.560 | 336 | 20 | 2 | 1 | 335 | 1 | 332 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017120 | Msa0659480 | 0.800768 | 1.234560e-48 | -8.615850e-47 |
| Msa0037820 | Msa0659480 | 0.821071 | 4.907065e-53 | -8.615850e-47 |
| Msa0047470 | Msa0659480 | 0.814796 | 1.283900e-51 | -8.615850e-47 |
| Msa0065690 | Msa0659480 | 0.812977 | 3.231256e-51 | -8.615850e-47 |
| Msa0084680 | Msa0659480 | 0.808988 | 2.362141e-50 | -8.615850e-47 |
| Msa0114240 | Msa0659480 | 0.800454 | 1.430223e-48 | -8.615850e-47 |
| Msa0607300 | Msa0659480 | 0.811948 | 5.423021e-51 | -8.615850e-47 |
| Msa0609990 | Msa0659480 | 0.801585 | 8.398755e-49 | -8.615850e-47 |
| Msa0614230 | Msa0659480 | 0.809482 | 1.851740e-50 | -8.615850e-47 |
| Msa0619350 | Msa0659480 | 0.862030 | 6.760727e-64 | -8.615850e-47 |
| Msa0622390 | Msa0659480 | 0.804315 | 2.291868e-49 | -8.615850e-47 |
| Msa0659480 | Msa0691100 | 0.805100 | 1.570987e-49 | -8.615850e-47 |
| Msa0659480 | Msa0724050 | 0.812204 | 4.769654e-51 | -8.615850e-47 |
| Msa0659480 | Msa0750380 | 0.803442 | 3.480010e-49 | -8.615850e-47 |
| Msa0659480 | Msa0763880 | 0.808739 | 2.671163e-50 | -8.615850e-47 |
| Msa0659480 | Msa0763910 | 0.805639 | 1.211170e-49 | -8.615850e-47 |
| Msa0659480 | Msa0794460 | 0.807507 | 4.886783e-50 | -8.615850e-47 |
| Msa0659480 | Msa0830720 | 0.816727 | 4.763485e-52 | -8.615850e-47 |
| Msa0659480 | Msa0882700 | 0.800128 | 1.666592e-48 | -8.615850e-47 |
| Msa0659480 | Msa0934830 | 0.819559 | 1.089965e-52 | -8.615850e-47 |
| Msa0659480 | Msa0966410 | 0.801935 | 7.118783e-49 | -8.615850e-47 |
| Msa0659480 | Msa1001780 | 0.802289 | 6.021423e-49 | -8.615850e-47 |
| Msa0659480 | Msa1033790 | 0.803202 | 3.900670e-49 | -8.615850e-47 |
| Msa0659480 | Msa1038320 | 0.810344 | 1.207731e-50 | -8.615850e-47 |
| Msa0659480 | Msa1130650 | 0.801943 | 7.093398e-49 | -8.615850e-47 |
| Msa0659480 | Msa1130730 | 0.800346 | 1.504853e-48 | -8.615850e-47 |
| Msa0659480 | Msa1177240 | 0.801057 | 1.077249e-48 | -8.615850e-47 |
| Msa0659480 | Msa1238730 | 0.819774 | 9.732784e-53 | -8.615850e-47 |
| Msa0659480 | Msa1264560 | 0.802748 | 4.842984e-49 | -8.615850e-47 |
| Msa0659480 | Msa1316720 | 0.809678 | 1.680049e-50 | -8.615850e-47 |
| Msa0659480 | Msa1322420 | 0.810654 | 1.034966e-50 | -8.615850e-47 |
| Msa0659480 | Msa1380720 | 0.852059 | 5.916777e-61 | -8.615850e-47 |
| Msa0659480 | Msa1381130 | 0.815133 | 1.080439e-51 | -8.615850e-47 |
| Msa0659480 | Msa1423230 | 0.880780 | 4.140690e-70 | -8.615850e-47 |
| Msa0659480 | Msa1439030 | 0.846109 | 2.669056e-59 | -8.615850e-47 |
| Msa0659480 | Msa1440180 | 0.821971 | 3.040363e-53 | -8.615850e-47 |
| Msa0659480 | Msa1449740 | 0.820369 | 7.114759e-53 | -8.615850e-47 |
| Msa0171920 | Msa0659480 | 0.809462 | 1.870265e-50 | -8.615850e-47 |
| Msa0173760 | Msa0659480 | 0.801255 | 9.814542e-49 | -8.615850e-47 |
| Msa0176710 | Msa0659480 | 0.801783 | 7.650753e-49 | -8.615850e-47 |
| Msa0185390 | Msa0659480 | 0.814601 | 1.418182e-51 | -8.615850e-47 |
| Msa0206940 | Msa0659480 | 0.804724 | 1.883137e-49 | -8.615850e-47 |
| Msa0387790 | Msa0659480 | 0.825409 | 4.761655e-54 | -8.615850e-47 |
| Msa0413740 | Msa0659480 | 0.800850 | 1.187719e-48 | -8.615850e-47 |
| Msa0421800 | Msa0659480 | 0.820044 | 8.445074e-53 | -8.615850e-47 |
| Msa0282860 | Msa0659480 | 0.803058 | 4.179104e-49 | -8.615850e-47 |
| Msa0334020 | Msa0659480 | 0.801493 | 8.774706e-49 | -8.615850e-47 |
| Msa0505390 | Msa0659480 | 0.800296 | 1.540102e-48 | -8.615850e-47 |
| Msa0512310 | Msa0659480 | 0.819202 | 1.314564e-52 | -8.615850e-47 |
| Msa0514260 | Msa0659480 | 0.826559 | 2.538560e-54 | -8.615850e-47 |
| Msa0524050 | Msa0659480 | 0.812906 | 3.348329e-51 | -8.615850e-47 |
| Msa0530930 | Msa0659480 | 0.814298 | 1.654680e-51 | -8.615850e-47 |
| Msa0534420 | Msa0659480 | 0.801194 | 1.010092e-48 | -8.615850e-47 |
| Msa0577090 | Msa0659480 | 0.845785 | 3.270996e-59 | -8.615850e-47 |
| Msa0577230 | Msa0659480 | 0.815307 | 9.886296e-52 | -8.615850e-47 |
| Msa0579610 | Msa0659480 | 0.801351 | 9.381552e-49 | -8.615850e-47 |
| Msa0587900 | Msa0659480 | 0.801364 | 9.325684e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659480 | MtrunA17_Chr8g0384691 | 92.560 | 336 | 20 | 2 | 1 | 335 | 1 | 332 | 0.0 | 582 |
| Msa0659480 | MtrunA17_Chr3g0130681 | 65.385 | 208 | 70 | 1 | 121 | 328 | 101 | 306 | 8.75e-104 | 306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659480 | AT4G33480.1 | 68.720 | 211 | 65 | 1 | 121 | 330 | 124 | 334 | 6.73e-102 | 303 |
Find 73 sgRNAs with CRISPR-Local
Find 351 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGGACCTGTAAAATTAT+AGG | 0.218189 | 4_3:+69886815 | Msa0659480:three_prime_UTR |
| GTTGTTACTGGTGTTGCTTC+TGG | 0.256857 | 4_3:+69881563 | Msa0659480:CDS |
| TGTTAGTAATTGTTGTAATC+TGG | 0.263737 | 4_3:+69886750 | Msa0659480:three_prime_UTR |
| AAGAATTGGAATGAGAATTA+AGG | 0.278335 | 4_3:-69881355 | None:intergenic |
| AGTTAGTATTTGTTGTTATC+TGG | 0.290200 | 4_3:+69886701 | Msa0659480:three_prime_UTR |
| TAAGGACCTGTAAAATTATA+GGG | 0.308395 | 4_3:+69886816 | Msa0659480:three_prime_UTR |
| ACAGAAAATTGTAGAAGAAT+TGG | 0.315728 | 4_3:-69881369 | None:intergenic |
| GCAAACCCGGTGGGAGGTTC+CGG | 0.321014 | 4_3:-69881620 | None:intergenic |
| TCCTGATGATATGCCGTTGC+CGG | 0.337706 | 4_3:+69881601 | Msa0659480:CDS |
| GATGTTCAAAATGTTGTTAC+TGG | 0.353378 | 4_3:+69881551 | Msa0659480:CDS |
| GCTCAGGTCAATGAGAAAAT+TGG | 0.364929 | 4_3:-69886873 | None:intergenic |
| AAATTCAGTCTCCTCGTCTA+TGG | 0.365085 | 4_3:-69886297 | None:intergenic |
| TTAATTACTTACGTGTCAAC+CGG | 0.369775 | 4_3:-69881869 | None:intergenic |
| AAATAGATTGACTGTGCTCT+TGG | 0.399674 | 4_3:+69886839 | Msa0659480:three_prime_UTR |
| CATTTGTGAACAGGACTTGC+TGG | 0.414686 | 4_3:+69886253 | Msa0659480:intron |
| TTCTGCTTACTTCAACAAAT+CGG | 0.416331 | 4_3:+69881663 | Msa0659480:CDS |
| CAATAATTCAAAATCAGTAT+TGG | 0.434374 | 4_3:-69881507 | None:intergenic |
| TTCCGTTGGAGTGTGTGGTT+CGG | 0.440368 | 4_3:+69881801 | Msa0659480:CDS |
| TTATTTGTGCAGGGTGAGAA+TGG | 0.443645 | 4_3:+69885872 | Msa0659480:intron |
| TTGGAGGAAGAAGAAGAAGA+AGG | 0.448446 | 4_3:-69881422 | None:intergenic |
| TCCGGCAACGGCATATCATC+AGG | 0.470462 | 4_3:-69881602 | None:intergenic |
| GGAGACTGAATTTAATGCCT+TGG | 0.472300 | 4_3:+69886307 | Msa0659480:CDS |
| TCCAACGGAAGGTTATTCAT+AGG | 0.482809 | 4_3:-69881788 | None:intergenic |
| GGGTTTGCCATTGACGAAAA+CGG | 0.491547 | 4_3:+69881635 | Msa0659480:CDS |
| CCGTTGCCGGAACCTCCCAC+CGG | 0.491708 | 4_3:+69881614 | Msa0659480:CDS |
| CGGTAAAATCAACCGTGCTC+AGG | 0.495598 | 4_3:-69886889 | None:intergenic |
| TCTGGAAAGTAGAGATAGAT+AGG | 0.497504 | 4_3:+69886719 | Msa0659480:three_prime_UTR |
| AACAAGATGCATGTGTATCT+TGG | 0.502259 | 4_3:-69882957 | None:intergenic |
| CTTCAGTCGAAACTGAGGAT+TGG | 0.503516 | 4_3:+69881471 | Msa0659480:CDS |
| GACTGAATTTAATGCCTTGG+TGG | 0.506705 | 4_3:+69886310 | Msa0659480:CDS |
| TGAATGTATGTTGCTTTGCC+CGG | 0.514398 | 4_3:+69881850 | Msa0659480:CDS |
| GCGAGCGCATACGCTGCAGC+AGG | 0.519080 | 4_3:-69882935 | None:intergenic |
| TCCTATGAATAACCTTCCGT+TGG | 0.519345 | 4_3:+69881787 | Msa0659480:CDS |
| GTGCTCTTCAATATTTGCAC+AGG | 0.520741 | 4_3:-69881980 | None:intergenic |
| AAAATTGATCATATACATAG+AGG | 0.521725 | 4_3:-69886792 | None:intergenic |
| AAATTGATCATATACATAGA+GGG | 0.530400 | 4_3:-69886791 | None:intergenic |
| ACTTCAGTTTGTTGTTGTGA+AGG | 0.541807 | 4_3:+69884966 | Msa0659480:CDS |
| ACATGCATCTTGTTTACAGC+GGG | 0.542894 | 4_3:+69882966 | Msa0659480:CDS |
| CCGGTGGGAGGTTCCGGCAA+CGG | 0.543817 | 4_3:-69881614 | None:intergenic |
| TGCACTTATTGAAGCAATGA+TGG | 0.547958 | 4_3:+69886591 | Msa0659480:CDS |
| AATTGCAACTGCTGCTGCTG+AGG | 0.548569 | 4_3:-69881273 | None:intergenic |
| CGTTGCCGGAACCTCCCACC+GGG | 0.548585 | 4_3:+69881615 | Msa0659480:CDS |
| ATCATCAGGATAAAATAAAG+AGG | 0.555773 | 4_3:-69881588 | None:intergenic |
| TATTTGTGCAGGGTGAGAAT+GGG | 0.556129 | 4_3:+69885873 | Msa0659480:intron |
| CTTACAGCTGACCATCCATC+AGG | 0.563519 | 4_3:-69882004 | None:intergenic |
| TAATTACTTACGTGTCAACC+GGG | 0.577475 | 4_3:-69881868 | None:intergenic |
| TCTATGGCGTCAATGACAGC+AGG | 0.580809 | 4_3:-69886281 | None:intergenic |
| TAACCTTCCGTTGGAGTGTG+TGG | 0.581027 | 4_3:+69881796 | Msa0659480:CDS |
| TTCACAACAACAAACTGAAG+TGG | 0.585546 | 4_3:-69884964 | None:intergenic |
| TTCGTCAATGGCAAACCCGG+TGG | 0.591270 | 4_3:-69881630 | None:intergenic |
| AAAACAAAGATAGATGAGAT+CGG | 0.591300 | 4_3:-69886909 | None:intergenic |
| ATATTGAAGAGCACACCTGA+TGG | 0.594346 | 4_3:+69881989 | Msa0659480:CDS |
| TGCAGATGATGGTAATGAAG+TGG | 0.597707 | 4_3:+69884139 | Msa0659480:intron |
| TGAAGAGCACACCTGATGGA+TGG | 0.603729 | 4_3:+69881993 | Msa0659480:CDS |
| TGAGAATGGGATGTTTCAAA+TGG | 0.603878 | 4_3:+69885886 | Msa0659480:CDS |
| GTAATTTCTACACCATCACT+TGG | 0.605477 | 4_3:-69884170 | None:intergenic |
| GTGGATGGCTTGCCAAGTGA+TGG | 0.606609 | 4_3:+69884158 | Msa0659480:CDS |
| GATTACAACAATTACTAACA+AGG | 0.607104 | 4_3:-69886747 | None:intergenic |
| ACAAACTGAAGTGGTTCAGA+TGG | 0.608941 | 4_3:-69884955 | None:intergenic |
| CTCCGAACCACACACTCCAA+CGG | 0.614714 | 4_3:-69881803 | None:intergenic |
| TCGTCAATGGCAAACCCGGT+GGG | 0.620091 | 4_3:-69881629 | None:intergenic |
| ATTACAACAATTACTAACAA+GGG | 0.630057 | 4_3:-69886746 | None:intergenic |
| GAACCACACACTCCAACGGA+AGG | 0.636707 | 4_3:-69881799 | None:intergenic |
| CACATGCATCTTGTTTACAG+CGG | 0.646015 | 4_3:+69882965 | Msa0659480:CDS |
| GAATTCTTCAGTCGAAACTG+AGG | 0.655770 | 4_3:+69881466 | Msa0659480:CDS |
| TCAATGGCAAACCCGGTGGG+AGG | 0.656601 | 4_3:-69881626 | None:intergenic |
| TGTCATTGACGCCATAGACG+AGG | 0.663191 | 4_3:+69886286 | Msa0659480:CDS |
| TACTGTTACACAGCACGTGG+CGG | 0.668638 | 4_3:+69883077 | Msa0659480:CDS |
| AATTGATCATATACATAGAG+GGG | 0.671889 | 4_3:-69886790 | None:intergenic |
| GATATACTTGACTTCCACAC+AGG | 0.674786 | 4_3:+69883119 | Msa0659480:CDS |
| GATGATGGTAATGAAGTGGA+TGG | 0.699911 | 4_3:+69884143 | Msa0659480:intron |
| AGGTACTGTTACACAGCACG+TGG | 0.735751 | 4_3:+69883074 | Msa0659480:intron |
| AATGAAGTCACATACCACCA+AGG | 0.747149 | 4_3:-69886324 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAATAAGTTGTTAAC+AGG | + | chr4_3:69881760-69881779 | Msa0659480:intron | 15.0% |
| !!! | TTTATTATTATTGATGACTA+TGG | + | chr4_3:69881934-69881953 | Msa0659480:intron | 15.0% |
| !! | AAAATTAAATAACACGATTT+AGG | - | chr4_3:69882283-69882302 | None:intergenic | 15.0% |
| !!! | TTATTTTAGTTTTTGTGATA+TGG | + | chr4_3:69882691-69882710 | Msa0659480:intron | 15.0% |
| !! | AATTAAAATCTATGTTTGTA+TGG | + | chr4_3:69882729-69882748 | Msa0659480:intron | 15.0% |
| !! | AACGTAGAAAAAAAAAAAAA+GGG | - | chr4_3:69882839-69882858 | None:intergenic | 15.0% |
| !! | AAACGTAGAAAAAAAAAAAA+AGG | - | chr4_3:69882840-69882859 | None:intergenic | 15.0% |
| !! | AAAATGAAAAGTTAATCTTT+AGG | + | chr4_3:69883981-69884000 | Msa0659480:intron | 15.0% |
| !!! | GGTAATTTTATTAACTTAAT+TGG | + | chr4_3:69884205-69884224 | Msa0659480:intron | 15.0% |
| !!! | GCTTCTAAATTTAAAATTAA+TGG | - | chr4_3:69884650-69884669 | None:intergenic | 15.0% |
| !! | ATGAAAATATGTTAATAAGT+CGG | + | chr4_3:69885258-69885277 | Msa0659480:intron | 15.0% |
| !!! | TCTTATAATCCAATTTTATA+AGG | + | chr4_3:69885292-69885311 | Msa0659480:intron | 15.0% |
| !! | AGATATTATGATAATTAACT+TGG | + | chr4_3:69885846-69885865 | Msa0659480:intron | 15.0% |
| !!! | TTTTGTAGTTAATTAATGAT+TGG | - | chr4_3:69885936-69885955 | None:intergenic | 15.0% |
| !! | ATTAGATTACAGAGAAAAAA+GGG | + | chr4_3:69881222-69881241 | Msa0659480:five_prime_UTR | 20.0% |
| !!! | TTTTGAAATGAAACTGAAAT+TGG | - | chr4_3:69881335-69881354 | None:intergenic | 20.0% |
| !! | CAATAATTCAAAATCAGTAT+TGG | - | chr4_3:69881510-69881529 | None:intergenic | 20.0% |
| !!! | ATATGGAATTTTATTAATGC+AGG | + | chr4_3:69881957-69881976 | Msa0659480:intron | 20.0% |
| !!! | AAATTGAGATTTAAAATGCA+GGG | - | chr4_3:69882036-69882055 | None:intergenic | 20.0% |
| !! | ATTCTTAATGTTATCTTGAA+TGG | + | chr4_3:69882103-69882122 | Msa0659480:intron | 20.0% |
| !! | ATGCTTTAATAAGAGTTTAA+TGG | + | chr4_3:69882323-69882342 | Msa0659480:intron | 20.0% |
| !!! | TTGTATGAACATTTTGAAAT+TGG | - | chr4_3:69882421-69882440 | None:intergenic | 20.0% |
| !! | TCAAAATGTTCATACAAAAA+TGG | + | chr4_3:69882424-69882443 | Msa0659480:intron | 20.0% |
| !! | CAAAATGTTCATACAAAAAT+GGG | + | chr4_3:69882425-69882444 | Msa0659480:intron | 20.0% |
| !! | AAAATGTTCATACAAAAATG+GGG | + | chr4_3:69882426-69882445 | Msa0659480:intron | 20.0% |
| !!! | CTGTAGATCATAATTTTTAA+AGG | - | chr4_3:69882507-69882526 | None:intergenic | 20.0% |
| !! | ATACAAATACTTCATAGTTT+AGG | - | chr4_3:69882601-69882620 | None:intergenic | 20.0% |
| !! | ATAACAAACAACGAAATATT+GGG | - | chr4_3:69882629-69882648 | None:intergenic | 20.0% |
| !!! | AATATTTCGTTGTTTGTTAT+GGG | + | chr4_3:69882629-69882648 | Msa0659480:intron | 20.0% |
| !! | AGAAAAAAAAAAAAAGGGAA+AGG | - | chr4_3:69882834-69882853 | None:intergenic | 20.0% |
| !! | CTTATTCTTGTGATATTATA+AGG | + | chr4_3:69883475-69883494 | Msa0659480:intron | 20.0% |
| !! | GAAGTTGCTAAATTATAATA+CGG | - | chr4_3:69883630-69883649 | None:intergenic | 20.0% |
| !! | AGGAAGTTATTATCAATATA+TGG | + | chr4_3:69884001-69884020 | Msa0659480:intron | 20.0% |
| !!! | AGAAATTACATATTTTGATC+TGG | + | chr4_3:69884184-69884203 | Msa0659480:CDS | 20.0% |
| !! | TGAAGTGAAAAATAAAAAAC+GGG | - | chr4_3:69884340-69884359 | None:intergenic | 20.0% |
| !! | GTGAAGTGAAAAATAAAAAA+CGG | - | chr4_3:69884341-69884360 | None:intergenic | 20.0% |
| !! | ATAAGTTCATTTCAATGAAT+TGG | - | chr4_3:69884384-69884403 | None:intergenic | 20.0% |
| !! | TTCATGATATAAACACAATA+TGG | - | chr4_3:69884586-69884605 | None:intergenic | 20.0% |
| !!! | AAATTTAAAATTAATGGACG+AGG | - | chr4_3:69884644-69884663 | None:intergenic | 20.0% |
| !! | ATTTAACTAATATTCAGAAG+AGG | + | chr4_3:69885079-69885098 | Msa0659480:intron | 20.0% |
| !! | TGAAAATATGTTAATAAGTC+GGG | + | chr4_3:69885259-69885278 | Msa0659480:intron | 20.0% |
| !! | AAGAAAATATATAGGAGAAT+TGG | - | chr4_3:69885592-69885611 | None:intergenic | 20.0% |
| !! | ATCTTAAACAAGTCTATAAA+AGG | - | chr4_3:69885697-69885716 | None:intergenic | 20.0% |
| !!! | TAGATCTGAATTTTTACAAT+TGG | + | chr4_3:69885812-69885831 | Msa0659480:intron | 20.0% |
| !!! | ATTGAATTTGAAACTAAGAA+AGG | - | chr4_3:69885973-69885992 | None:intergenic | 20.0% |
| !! | TTTAGTAAATTATGATACGA+TGG | + | chr4_3:69886350-69886369 | Msa0659480:intron | 20.0% |
| !! | CATGGAATAAATAGTTAAAA+AGG | - | chr4_3:69886508-69886527 | None:intergenic | 20.0% |
| !! | ATTACAACAATTACTAACAA+GGG | - | chr4_3:69886749-69886768 | None:intergenic | 20.0% |
| !! | AAATTGATCATATACATAGA+GGG | - | chr4_3:69886794-69886813 | None:intergenic | 20.0% |
| !! | AAAATTGATCATATACATAG+AGG | - | chr4_3:69886795-69886814 | None:intergenic | 20.0% |
| !!! | TGTATATGATCAATTTTGTA+AGG | + | chr4_3:69886798-69886817 | Msa0659480:three_prime_UTR | 20.0% |
| !!! | TTTTGATTGTTTTTCAGTTT+TGG | + | chr4_3:69886936-69886955 | Msa0659480:intron | 20.0% |
| ! | GATTAGATTACAGAGAAAAA+AGG | + | chr4_3:69881221-69881240 | Msa0659480:five_prime_UTR | 25.0% |
| ! | TTAGATTACAGAGAAAAAAG+GGG | + | chr4_3:69881223-69881242 | Msa0659480:five_prime_UTR | 25.0% |
| ! | AAGAATTGGAATGAGAATTA+AGG | - | chr4_3:69881358-69881377 | None:intergenic | 25.0% |
| ! | ACAGAAAATTGTAGAAGAAT+TGG | - | chr4_3:69881372-69881391 | None:intergenic | 25.0% |
| ! | ATCATCAGGATAAAATAAAG+AGG | - | chr4_3:69881591-69881610 | None:intergenic | 25.0% |
| ! | TTGACACGTAAGTAATTAAA+AGG | + | chr4_3:69881873-69881892 | Msa0659480:intron | 25.0% |
| !! | ATTAAAAGGTTTTACAACGT+CGG | + | chr4_3:69881887-69881906 | Msa0659480:intron | 25.0% |
| !! | ATTATTGATGACTATGGATA+TGG | + | chr4_3:69881940-69881959 | Msa0659480:intron | 25.0% |
| !! | CAAATTGAGATTTAAAATGC+AGG | - | chr4_3:69882037-69882056 | None:intergenic | 25.0% |
| ! | TCTAATGTGAGTTTACTTTA+AGG | + | chr4_3:69882136-69882155 | Msa0659480:intron | 25.0% |
| ! | TCTCAATAATTGATGAGAAA+AGG | - | chr4_3:69882245-69882264 | None:intergenic | 25.0% |
| ! | TTAAATAACACGATTTAGGT+TGG | - | chr4_3:69882279-69882298 | None:intergenic | 25.0% |
| ! | AAGCATTATTCAAAGAGATT+TGG | - | chr4_3:69882309-69882328 | None:intergenic | 25.0% |
| !!! | TATGAACATTTTGAAATTGG+TGG | - | chr4_3:69882418-69882437 | None:intergenic | 25.0% |
| !!! | GAAAATTGATGGATTTTCAT+TGG | + | chr4_3:69882455-69882474 | Msa0659480:intron | 25.0% |
| ! | CATAACAAACAACGAAATAT+TGG | - | chr4_3:69882630-69882649 | None:intergenic | 25.0% |
| !! | CAATATTTCGTTGTTTGTTA+TGG | + | chr4_3:69882628-69882647 | Msa0659480:intron | 25.0% |
| ! | ATAAAAATGAGTGATATGCA+GGG | - | chr4_3:69882675-69882694 | None:intergenic | 25.0% |
| ! | AATAAAAATGAGTGATATGC+AGG | - | chr4_3:69882676-69882695 | None:intergenic | 25.0% |
| ! | AAAAAGAATGTCATTGTATG+TGG | - | chr4_3:69882787-69882806 | None:intergenic | 25.0% |
| !! | GAAATATGTATTTTCGCATA+AGG | - | chr4_3:69882812-69882831 | None:intergenic | 25.0% |
| ! | TTAGCAAATACAACTCTAAA+CGG | - | chr4_3:69883319-69883338 | None:intergenic | 25.0% |
| !! | CTAAAAACTTGTCAAGTTTT+TGG | + | chr4_3:69883335-69883354 | Msa0659480:intron | 25.0% |
| ! | ACTACTATAAACTAAAAGAG+AGG | - | chr4_3:69883399-69883418 | None:intergenic | 25.0% |
| !! | TTTATAGTAGTGTTTTTCGT+GGG | + | chr4_3:69883408-69883427 | Msa0659480:intron | 25.0% |
| ! | TGATATTATAAGGAGATGTT+TGG | + | chr4_3:69883485-69883504 | Msa0659480:intron | 25.0% |
| ! | GATATTATAAGGAGATGTTT+GGG | + | chr4_3:69883486-69883505 | Msa0659480:intron | 25.0% |
| ! | GAATTTATGTTTACAACTAC+TGG | + | chr4_3:69883561-69883580 | Msa0659480:intron | 25.0% |
| ! | GAATTTATGTTTACAACTAC+TGG | + | chr4_3:69883561-69883580 | Msa0659480:intron | 25.0% |
| ! | TATAATTTCATGTGCAAGTT+AGG | + | chr4_3:69883747-69883766 | Msa0659480:intron | 25.0% |
| ! | TCTAATTATGCAACAATTCA+TGG | - | chr4_3:69883777-69883796 | None:intergenic | 25.0% |
| ! | CGAGTAACAATGAATATATA+TGG | - | chr4_3:69883846-69883865 | None:intergenic | 25.0% |
| ! | ATCAAGCATGAAAAAACTTA+GGG | - | chr4_3:69883906-69883925 | None:intergenic | 25.0% |
| ! | AATCAAGCATGAAAAAACTT+AGG | - | chr4_3:69883907-69883926 | None:intergenic | 25.0% |
| ! | CAGTTGGAAAAATGAAAATT+AGG | - | chr4_3:69883930-69883949 | None:intergenic | 25.0% |
| ! | TTATTATCAATATATGGCCA+GGG | + | chr4_3:69884007-69884026 | Msa0659480:intron | 25.0% |
| !!! | TTGATTTTTTTTCTCAATCG+AGG | + | chr4_3:69884249-69884268 | Msa0659480:intron | 25.0% |
| !! | TATTTTTCACTTCACTAGTA+TGG | + | chr4_3:69884346-69884365 | Msa0659480:intron | 25.0% |
| ! | AAGACTTGATAAAAACAGAT+GGG | - | chr4_3:69884481-69884500 | None:intergenic | 25.0% |
| ! | AAAGACTTGATAAAAACAGA+TGG | - | chr4_3:69884482-69884501 | None:intergenic | 25.0% |
| !!! | TCTGTTTTTATCAAGTCTTT+TGG | + | chr4_3:69884482-69884501 | Msa0659480:intron | 25.0% |
| ! | ACAAGAATAATGTATAGATC+AGG | - | chr4_3:69884519-69884538 | None:intergenic | 25.0% |
| !! | AGAAAGTACAATCAATACTA+CGG | - | chr4_3:69884558-69884577 | None:intergenic | 25.0% |
| !!! | ACTTTTTCTTTCTAAATCGA+GGG | + | chr4_3:69884699-69884718 | Msa0659480:intron | 25.0% |
| !!! | ATAGTCCTTTTTTTTTTTGC+AGG | + | chr4_3:69884906-69884925 | Msa0659480:intron | 25.0% |
| ! | ATCTTCCTGCAAAAAAAAAA+AGG | - | chr4_3:69884914-69884933 | None:intergenic | 25.0% |
| !!! | AACGTTTTCCTTTTAATTTC+TGG | - | chr4_3:69885049-69885068 | None:intergenic | 25.0% |
| ! | AAAAGGAAAACGTTTGATAT+TGG | + | chr4_3:69885055-69885074 | Msa0659480:intron | 25.0% |
| !!! | TCTTATTTTCTATTTCTGCA+AGG | - | chr4_3:69885173-69885192 | None:intergenic | 25.0% |
| ! | GAAAATATGTTAATAAGTCG+GGG | + | chr4_3:69885260-69885279 | Msa0659480:intron | 25.0% |
| ! | AATCAATCGCCTTATAAAAT+TGG | - | chr4_3:69885304-69885323 | None:intergenic | 25.0% |
| !!! | TTTTATAAGGCGATTGATTT+AGG | + | chr4_3:69885305-69885324 | Msa0659480:intron | 25.0% |
| ! | TAAACAAGTCTATAAAAGGA+GGG | - | chr4_3:69885693-69885712 | None:intergenic | 25.0% |
| ! | TTAAACAAGTCTATAAAAGG+AGG | - | chr4_3:69885694-69885713 | None:intergenic | 25.0% |
| !! | TTTGAAACTAAGAAAGGAAT+TGG | - | chr4_3:69885967-69885986 | None:intergenic | 25.0% |
| ! | TCTCGTATGCATTTATAATA+TGG | + | chr4_3:69886135-69886154 | Msa0659480:intron | 25.0% |
| !!! | TATGTTAATTTGTCTTCTGT+TGG | - | chr4_3:69886445-69886464 | None:intergenic | 25.0% |
| ! | ACAGAAGACAAATTAACATA+TGG | + | chr4_3:69886445-69886464 | Msa0659480:intron | 25.0% |
| !! | TACAGCTAAAAAAGTATATC+GGG | - | chr4_3:69886647-69886666 | None:intergenic | 25.0% |
| !! | CTACAGCTAAAAAAGTATAT+CGG | - | chr4_3:69886648-69886667 | None:intergenic | 25.0% |
| !!! | AGTTAGTATTTGTTGTTATC+TGG | + | chr4_3:69886701-69886720 | Msa0659480:three_prime_UTR | 25.0% |
| ! | GATTACAACAATTACTAACA+AGG | - | chr4_3:69886750-69886769 | None:intergenic | 25.0% |
| ! | TGTTAGTAATTGTTGTAATC+TGG | + | chr4_3:69886750-69886769 | Msa0659480:three_prime_UTR | 25.0% |
| ! | AATTGATCATATACATAGAG+GGG | - | chr4_3:69886793-69886812 | None:intergenic | 25.0% |
| ! | TAAGGACCTGTAAAATTATA+GGG | + | chr4_3:69886816-69886835 | Msa0659480:three_prime_UTR | 25.0% |
| !! | CTATTTCCCTATAATTTTAC+AGG | - | chr4_3:69886825-69886844 | None:intergenic | 25.0% |
| ! | AAAACAAAGATAGATGAGAT+CGG | - | chr4_3:69886912-69886931 | None:intergenic | 25.0% |
| !! | ACTTTTACATGTCATTGTTT+AGG | + | chr4_3:69886981-69887000 | Msa0659480:three_prime_UTR | 25.0% |
| ! | AGGAGAATTTTTCTGTGATT+TGG | - | chr4_3:69881402-69881421 | None:intergenic | 30.0% |
| ! | ATTATTGCGTGATTTTTCTG+CGG | + | chr4_3:69881523-69881542 | Msa0659480:CDS | 30.0% |
| GATGTTCAAAATGTTGTTAC+TGG | + | chr4_3:69881551-69881570 | Msa0659480:CDS | 30.0% | |
| TTCTGCTTACTTCAACAAAT+CGG | + | chr4_3:69881663-69881682 | Msa0659480:CDS | 30.0% | |
| TTAATTACTTACGTGTCAAC+CGG | - | chr4_3:69881872-69881891 | None:intergenic | 30.0% | |
| GTTGCATCTAATCTTCATTT+AGG | + | chr4_3:69882073-69882092 | Msa0659480:intron | 30.0% | |
| GTAAAACTATTTCACAGTGA+CGG | - | chr4_3:69882356-69882375 | None:intergenic | 30.0% | |
| AAAATATCTCTGTCCATATC+AGG | + | chr4_3:69883054-69883073 | Msa0659480:intron | 30.0% | |
| TAAAAAAATACTTGCCTGTG+TGG | - | chr4_3:69883136-69883155 | None:intergenic | 30.0% | |
| ACATTAGTACTTCAGAGAAT+GGG | - | chr4_3:69883163-69883182 | None:intergenic | 30.0% | |
| TTAGAGTGTAAACAAAGCAA+AGG | + | chr4_3:69883198-69883217 | Msa0659480:intron | 30.0% | |
| TAGAGTGTAAACAAAGCAAA+GGG | + | chr4_3:69883199-69883218 | Msa0659480:intron | 30.0% | |
| ! | GTTTATAGTAGTGTTTTTCG+TGG | + | chr4_3:69883407-69883426 | Msa0659480:intron | 30.0% |
| TTCATTCTCCTAAGTAAGAA+GGG | - | chr4_3:69883443-69883462 | None:intergenic | 30.0% | |
| ATTCATTCTCCTAAGTAAGA+AGG | - | chr4_3:69883444-69883463 | None:intergenic | 30.0% | |
| TATCACAAGAATAAGTGACT+TGG | - | chr4_3:69883470-69883489 | None:intergenic | 30.0% | |
| CAACTACTGGACTTAAAATT+TGG | + | chr4_3:69883574-69883593 | Msa0659480:intron | 30.0% | |
| GTTATTATCAATATATGGCC+AGG | + | chr4_3:69884006-69884025 | Msa0659480:intron | 30.0% | |
| ! | TTATACCATTTTGCAGATGA+TGG | + | chr4_3:69884128-69884147 | Msa0659480:intron | 30.0% |
| TAAGTGTTTCCAAGTTAGTA+AGG | + | chr4_3:69884280-69884299 | Msa0659480:intron | 30.0% | |
| ! | GCTTTGTATAGATGCATTTT+TGG | + | chr4_3:69884610-69884629 | Msa0659480:intron | 30.0% |
| ! | TAAATTTAGAAGCGTGACAA+AGG | + | chr4_3:69884657-69884676 | Msa0659480:intron | 30.0% |
| !! | GACTTTTTCTTTCTAAATCG+AGG | + | chr4_3:69884698-69884717 | Msa0659480:intron | 30.0% |
| GATAGTTGTAAAGTGACTAT+TGG | - | chr4_3:69884755-69884774 | None:intergenic | 30.0% | |
| CTTAACATTATTCCCATAGT+GGG | - | chr4_3:69885214-69885233 | None:intergenic | 30.0% | |
| TCTTAACATTATTCCCATAG+TGG | - | chr4_3:69885215-69885234 | None:intergenic | 30.0% | |
| TTTATACGAACACAGAACTT+GGG | - | chr4_3:69885336-69885355 | None:intergenic | 30.0% | |
| ! | TTTTATACGAACACAGAACT+TGG | - | chr4_3:69885337-69885356 | None:intergenic | 30.0% |
| !! | TAGGTTTTGTAGTGGAATTT+GGG | - | chr4_3:69885551-69885570 | None:intergenic | 30.0% |
| AGACGGAGAAGAAAATATAT+AGG | - | chr4_3:69885600-69885619 | None:intergenic | 30.0% | |
| GAAAAAGGGAAAGAAATAGA+GGG | - | chr4_3:69885669-69885688 | None:intergenic | 30.0% | |
| AAACAAGTCTATAAAAGGAG+GGG | - | chr4_3:69885692-69885711 | None:intergenic | 30.0% | |
| AGTAAAAGGGGAGAAAAAAT+AGG | - | chr4_3:69886020-69886039 | None:intergenic | 30.0% | |
| TCTCAGAAAAAGGAGTAAAA+GGG | - | chr4_3:69886033-69886052 | None:intergenic | 30.0% | |
| ATCTCAGAAAAAGGAGTAAA+AGG | - | chr4_3:69886034-69886053 | None:intergenic | 30.0% | |
| ATATTAAGGCAACCAAAATC+TGG | - | chr4_3:69886082-69886101 | None:intergenic | 30.0% | |
| ! | TTGGTTGCCTTAATATTTTC+CGG | + | chr4_3:69886086-69886105 | Msa0659480:intron | 30.0% |
| TCGTCAAACTTAATGTAACA+TGG | - | chr4_3:69886526-69886545 | None:intergenic | 30.0% | |
| GTAAGGACCTGTAAAATTAT+AGG | + | chr4_3:69886815-69886834 | Msa0659480:three_prime_UTR | 30.0% | |
| ACAGAGAAAAAAGGGGAAAA+AGG | + | chr4_3:69881230-69881249 | Msa0659480:five_prime_UTR | 35.0% | |
| CAGAGAAAAAAGGGGAAAAA+GGG | + | chr4_3:69881231-69881250 | Msa0659480:five_prime_UTR | 35.0% | |
| ! | TTTCTTCGTCTTCTTTTTGG+AGG | - | chr4_3:69881441-69881460 | None:intergenic | 35.0% |
| ! | CCTTTTCTTCGTCTTCTTTT+TGG | - | chr4_3:69881444-69881463 | None:intergenic | 35.0% |
| CCAAAAAGAAGACGAAGAAA+AGG | + | chr4_3:69881441-69881460 | Msa0659480:CDS | 35.0% | |
| ! | AATTTCACCGTTTTCGTCAA+TGG | - | chr4_3:69881645-69881664 | None:intergenic | 35.0% |
| TAATTACTTACGTGTCAACC+GGG | - | chr4_3:69881871-69881890 | None:intergenic | 35.0% | |
| TCGACAAATGAGCTTCTTTA+CGG | - | chr4_3:69882163-69882182 | None:intergenic | 35.0% | |
| TAAAGAAGCTCATTTGTCGA+TGG | + | chr4_3:69882163-69882182 | Msa0659480:intron | 35.0% | |
| AAAGAAGCTCATTTGTCGAT+GGG | + | chr4_3:69882164-69882183 | Msa0659480:intron | 35.0% | |
| ! | TTGAAATTGGTGGTATGACA+TGG | - | chr4_3:69882408-69882427 | None:intergenic | 35.0% |
| !! | GATGGATTTTCATTGGATGT+CGG | + | chr4_3:69882462-69882481 | Msa0659480:intron | 35.0% |
| !! | TTTCGTTGTTTGTTATGGGA+TGG | + | chr4_3:69882633-69882652 | Msa0659480:intron | 35.0% |
| TTGTGATATGGACAGATAAC+AGG | + | chr4_3:69882703-69882722 | Msa0659480:intron | 35.0% | |
| CAGAAGGAAGACATGAATTT+GGG | - | chr4_3:69882877-69882896 | None:intergenic | 35.0% | |
| ACAGAAGGAAGACATGAATT+TGG | - | chr4_3:69882878-69882897 | None:intergenic | 35.0% | |
| AACAAGATGCATGTGTATCT+TGG | - | chr4_3:69882960-69882979 | None:intergenic | 35.0% | |
| GACATTAGTACTTCAGAGAA+TGG | - | chr4_3:69883164-69883183 | None:intergenic | 35.0% | |
| AGCAAAGGGTTTATTCAGTT+TGG | + | chr4_3:69883213-69883232 | Msa0659480:intron | 35.0% | |
| GAATCGTACTACACTTTAAC+AGG | - | chr4_3:69883261-69883280 | None:intergenic | 35.0% | |
| ATTTAGACCCCTTCTTACTT+AGG | + | chr4_3:69883432-69883451 | Msa0659480:intron | 35.0% | |
| TCATTCTCCTAAGTAAGAAG+GGG | - | chr4_3:69883442-69883461 | None:intergenic | 35.0% | |
| CAACTACTGGACTTAAAGTT+TGG | + | chr4_3:69883698-69883717 | Msa0659480:intron | 35.0% | |
| AATTTCATGTGCAAGTTAGG+TGG | + | chr4_3:69883750-69883769 | Msa0659480:intron | 35.0% | |
| CATTACCATCATCTGCAAAA+TGG | - | chr4_3:69884136-69884155 | None:intergenic | 35.0% | |
| GTAATTTCTACACCATCACT+TGG | - | chr4_3:69884173-69884192 | None:intergenic | 35.0% | |
| ! | AGTTTGCTTCCTTACTAACT+TGG | - | chr4_3:69884292-69884311 | None:intergenic | 35.0% |
| ! | AGTGTGTTATTGTTCTTCCT+TGG | + | chr4_3:69884423-69884442 | Msa0659480:intron | 35.0% |
| ! | TTTTCTTTCTAAATCGAGGG+AGG | + | chr4_3:69884702-69884721 | Msa0659480:intron | 35.0% |
| TTTCTTTCTAAATCGAGGGA+GGG | + | chr4_3:69884703-69884722 | Msa0659480:intron | 35.0% | |
| !! | GTTTGACCTTGTCACTTTAA+GGG | - | chr4_3:69884800-69884819 | None:intergenic | 35.0% |
| !! | AGTTTGACCTTGTCACTTTA+AGG | - | chr4_3:69884801-69884820 | None:intergenic | 35.0% |
| TACAAACTTGGGTAGAACTT+TGG | + | chr4_3:69884856-69884875 | Msa0659480:intron | 35.0% | |
| TTCACAACAACAAACTGAAG+TGG | - | chr4_3:69884967-69884986 | None:intergenic | 35.0% | |
| !! | ACTTCAGTTTGTTGTTGTGA+AGG | + | chr4_3:69884966-69884985 | Msa0659480:CDS | 35.0% |
| AGATTGAAAGTAACCATTGC+AGG | + | chr4_3:69885017-69885036 | Msa0659480:intron | 35.0% | |
| GGATCACACCAGAAATTAAA+AGG | + | chr4_3:69885038-69885057 | Msa0659480:intron | 35.0% | |
| ATGAAATGATACTCCCACTA+TGG | + | chr4_3:69885198-69885217 | Msa0659480:intron | 35.0% | |
| TGAAATGATACTCCCACTAT+GGG | + | chr4_3:69885199-69885218 | Msa0659480:intron | 35.0% | |
| AAGCCTATCCAAGATTCATA+AGG | + | chr4_3:69885355-69885374 | Msa0659480:intron | 35.0% | |
| TGACCTTATGAATCTTGGAT+AGG | - | chr4_3:69885361-69885380 | None:intergenic | 35.0% | |
| GTCTCACATTGAATATGATC+TGG | + | chr4_3:69885465-69885484 | Msa0659480:intron | 35.0% | |
| GGAATTGAAAACATACTTCC+AGG | - | chr4_3:69885491-69885510 | None:intergenic | 35.0% | |
| !! | GTAGGTTTTGTAGTGGAATT+TGG | - | chr4_3:69885552-69885571 | None:intergenic | 35.0% |
| CAGAGAATGGTGAATAAAGA+CGG | - | chr4_3:69885617-69885636 | None:intergenic | 35.0% | |
| GGAAAAAGGGAAAGAAATAG+AGG | - | chr4_3:69885670-69885689 | None:intergenic | 35.0% | |
| TATAAAAGGAGGGGGAAAAA+GGG | - | chr4_3:69885683-69885702 | None:intergenic | 35.0% | |
| AACAAGTCTATAAAAGGAGG+GGG | - | chr4_3:69885691-69885710 | None:intergenic | 35.0% | |
| CTACTAGTATTCACAGAGTA+GGG | - | chr4_3:69885775-69885794 | None:intergenic | 35.0% | |
| ACTACTAGTATTCACAGAGT+AGG | - | chr4_3:69885776-69885795 | None:intergenic | 35.0% | |
| TGAGAATGGGATGTTTCAAA+TGG | + | chr4_3:69885886-69885905 | Msa0659480:CDS | 35.0% | |
| ! | AAATGGCTGATGATGTAAGT+AGG | + | chr4_3:69885903-69885922 | Msa0659480:intron | 35.0% |
| CTCAGAAAAAGGAGTAAAAG+GGG | - | chr4_3:69886032-69886051 | None:intergenic | 35.0% | |
| ! | ACAAAAGGTTGTCCAGATTT+TGG | + | chr4_3:69886067-69886086 | Msa0659480:intron | 35.0% |
| TGCATACGAGAAACAAAAGT+TGG | - | chr4_3:69886126-69886145 | None:intergenic | 35.0% | |
| GCTTGTGATTTAATCTGCTA+AGG | + | chr4_3:69886227-69886246 | Msa0659480:intron | 35.0% | |
| ! | TGACTTTTGCAACACACTTA+TGG | - | chr4_3:69886422-69886441 | None:intergenic | 35.0% |
| TAGGAAACACAACACAAACA+TGG | - | chr4_3:69886557-69886576 | None:intergenic | 35.0% | |
| TGCACTTATTGAAGCAATGA+TGG | + | chr4_3:69886591-69886610 | Msa0659480:CDS | 35.0% | |
| TCTGGAAAGTAGAGATAGAT+AGG | + | chr4_3:69886719-69886738 | Msa0659480:three_prime_UTR | 35.0% | |
| AAATAGATTGACTGTGCTCT+TGG | + | chr4_3:69886839-69886858 | Msa0659480:three_prime_UTR | 35.0% | |
| AAAAGGGGAAAAAGGGAGTA+TGG | + | chr4_3:69881238-69881257 | Msa0659480:exon | 40.0% | |
| TTGGAGGAAGAAGAAGAAGA+AGG | - | chr4_3:69881425-69881444 | None:intergenic | 40.0% | |
| GAATTCTTCAGTCGAAACTG+AGG | + | chr4_3:69881466-69881485 | Msa0659480:CDS | 40.0% | |
| ! | TCACCATAGTGAGTATTGCT+TGG | + | chr4_3:69881690-69881709 | Msa0659480:intron | 40.0% |
| GAACCAAGCAATACTCACTA+TGG | - | chr4_3:69881696-69881715 | None:intergenic | 40.0% | |
| TCCTATGAATAACCTTCCGT+TGG | + | chr4_3:69881787-69881806 | Msa0659480:CDS | 40.0% | |
| TCCAACGGAAGGTTATTCAT+AGG | - | chr4_3:69881791-69881810 | None:intergenic | 40.0% | |
| !! | TGAATGTATGTTGCTTTGCC+CGG | + | chr4_3:69881850-69881869 | Msa0659480:CDS | 40.0% |
| GTGCTCTTCAATATTTGCAC+AGG | - | chr4_3:69881983-69882002 | None:intergenic | 40.0% | |
| ! | ATATTGAAGAGCACACCTGA+TGG | + | chr4_3:69881989-69882008 | Msa0659480:CDS | 40.0% |
| !! | AAAAGGCGCTAAACAACAGT+TGG | - | chr4_3:69882228-69882247 | None:intergenic | 40.0% |
| TACTCATTCATCACAGTCAC+AGG | + | chr4_3:69882559-69882578 | Msa0659480:intron | 40.0% | |
| ACTCATTCATCACAGTCACA+GGG | + | chr4_3:69882560-69882579 | Msa0659480:intron | 40.0% | |
| ! | TCGCTGATCTAAAACACAGA+AGG | - | chr4_3:69882893-69882912 | None:intergenic | 40.0% |
| !! | TTCTGTGTTTTAGATCAGCG+AGG | + | chr4_3:69882892-69882911 | Msa0659480:intron | 40.0% |
| ! | CACATGCATCTTGTTTACAG+CGG | + | chr4_3:69882965-69882984 | Msa0659480:CDS | 40.0% |
| ! | ACATGCATCTTGTTTACAGC+GGG | + | chr4_3:69882966-69882985 | Msa0659480:CDS | 40.0% |
| CTGTGTAACAGTACCTGATA+TGG | - | chr4_3:69883070-69883089 | None:intergenic | 40.0% | |
| GATATACTTGACTTCCACAC+AGG | + | chr4_3:69883119-69883138 | Msa0659480:CDS | 40.0% | |
| ! | ATAAGGAGATGTTTGGGACT+TGG | + | chr4_3:69883492-69883511 | Msa0659480:intron | 40.0% |
| ! | TAAGGAGATGTTTGGGACTT+GGG | + | chr4_3:69883493-69883512 | Msa0659480:intron | 40.0% |
| TCACAATCAGACATGACAGT+TGG | - | chr4_3:69883946-69883965 | None:intergenic | 40.0% | |
| ! | TGCAGATGATGGTAATGAAG+TGG | + | chr4_3:69884139-69884158 | Msa0659480:intron | 40.0% |
| ! | GATGATGGTAATGAAGTGGA+TGG | + | chr4_3:69884143-69884162 | Msa0659480:intron | 40.0% |
| AAACAAAAGCAACACTGGTG+CGG | - | chr4_3:69884458-69884477 | None:intergenic | 40.0% | |
| ATGGGAAACAAAAGCAACAC+TGG | - | chr4_3:69884463-69884482 | None:intergenic | 40.0% | |
| !! | TCAAGTCTTTTGGAAGATCG+TGG | + | chr4_3:69884492-69884511 | Msa0659480:intron | 40.0% |
| TTCTTTCTAAATCGAGGGAG+GGG | + | chr4_3:69884704-69884723 | Msa0659480:intron | 40.0% | |
| GTTCTACCCAAGTTTGTATC+AGG | - | chr4_3:69884854-69884873 | None:intergenic | 40.0% | |
| ACAAACTGAAGTGGTTCAGA+TGG | - | chr4_3:69884958-69884977 | None:intergenic | 40.0% | |
| CTTTCAGAAGCTTGTACAAG+TGG | - | chr4_3:69884999-69885018 | None:intergenic | 40.0% | |
| AAGAGGTTCTTCTCTCTTCT+AGG | + | chr4_3:69885096-69885115 | Msa0659480:intron | 40.0% | |
| AGAGGTGACCTTATGAATCT+TGG | - | chr4_3:69885366-69885385 | None:intergenic | 40.0% | |
| ACGATAGCAGTAACTGATAG+AGG | - | chr4_3:69885384-69885403 | None:intergenic | 40.0% | |
| ! | TCATGGACTGAACATTTGGA+AGG | - | chr4_3:69885420-69885439 | None:intergenic | 40.0% |
| TTCCAAATGTTCAGTCCATG+AGG | + | chr4_3:69885419-69885438 | Msa0659480:intron | 40.0% | |
| TCCAAATGTTCAGTCCATGA+GGG | + | chr4_3:69885420-69885439 | Msa0659480:intron | 40.0% | |
| ACATTGAATATGATCTGGCC+TGG | + | chr4_3:69885470-69885489 | Msa0659480:intron | 40.0% | |
| TGAGAGTCGTTCTCATTTCT+AGG | - | chr4_3:69885512-69885531 | None:intergenic | 40.0% | |
| !!! | AAGGTTGGTAGGTTTTGTAG+TGG | - | chr4_3:69885559-69885578 | None:intergenic | 40.0% |
| ATATATAGGAGAATTGGCGC+AGG | - | chr4_3:69885586-69885605 | None:intergenic | 40.0% | |
| CTATAAAAGGAGGGGGAAAA+AGG | - | chr4_3:69885684-69885703 | None:intergenic | 40.0% | |
| ATAATGCCACTGTTCTCCAA+TGG | - | chr4_3:69885731-69885750 | None:intergenic | 40.0% | |
| ! | AACTTGGCCTTTATTTGTGC+AGG | + | chr4_3:69885862-69885881 | Msa0659480:intron | 40.0% |
| ! | ACTTGGCCTTTATTTGTGCA+GGG | + | chr4_3:69885863-69885882 | Msa0659480:intron | 40.0% |
| TTCTCACCCTGCACAAATAA+AGG | - | chr4_3:69885872-69885891 | None:intergenic | 40.0% | |
| TTATTTGTGCAGGGTGAGAA+TGG | + | chr4_3:69885872-69885891 | Msa0659480:intron | 40.0% | |
| TATTTGTGCAGGGTGAGAAT+GGG | + | chr4_3:69885873-69885892 | Msa0659480:intron | 40.0% | |
| !! | ATCAGAGTGCCACTTACAAA+AGG | + | chr4_3:69886052-69886071 | Msa0659480:intron | 40.0% |
| ! | TCTGGACAACCTTTTGTAAG+TGG | - | chr4_3:69886064-69886083 | None:intergenic | 40.0% |
| CTAAGGCAACATTTGTGAAC+AGG | + | chr4_3:69886244-69886263 | Msa0659480:intron | 40.0% | |
| AAATTCAGTCTCCTCGTCTA+TGG | - | chr4_3:69886300-69886319 | None:intergenic | 40.0% | |
| GGAGACTGAATTTAATGCCT+TGG | + | chr4_3:69886307-69886326 | Msa0659480:CDS | 40.0% | |
| GACTGAATTTAATGCCTTGG+TGG | + | chr4_3:69886310-69886329 | Msa0659480:CDS | 40.0% | |
| AATGAAGTCACATACCACCA+AGG | - | chr4_3:69886327-69886346 | None:intergenic | 40.0% | |
| GTTTGTGTTGTGTTTCCTAC+AGG | + | chr4_3:69886558-69886577 | Msa0659480:intron | 40.0% | |
| GCTCAGGTCAATGAGAAAAT+TGG | - | chr4_3:69886876-69886895 | None:intergenic | 40.0% | |
| ! | TTTTCTCATTGACCTGAGCA+CGG | + | chr4_3:69886877-69886896 | Msa0659480:three_prime_UTR | 40.0% |
| GAGGAAGAAGAAGAAGAAGG+AGG | - | chr4_3:69881422-69881441 | None:intergenic | 45.0% | |
| CTTCAGTCGAAACTGAGGAT+TGG | + | chr4_3:69881471-69881490 | Msa0659480:CDS | 45.0% | |
| !! | GTTGTTACTGGTGTTGCTTC+TGG | + | chr4_3:69881563-69881582 | Msa0659480:CDS | 45.0% |
| ! | GTTTTCGTCAATGGCAAACC+CGG | - | chr4_3:69881636-69881655 | None:intergenic | 45.0% |
| GGGTTTGCCATTGACGAAAA+CGG | + | chr4_3:69881635-69881654 | Msa0659480:CDS | 45.0% | |
| TGGGGTGATGCGAAAATTGA+TGG | + | chr4_3:69882444-69882463 | Msa0659480:intron | 45.0% | |
| !! | TGTGTTTTAGATCAGCGAGG+AGG | + | chr4_3:69882895-69882914 | Msa0659480:intron | 45.0% |
| GAATGCGTTTATCATCACCC+TGG | - | chr4_3:69884027-69884046 | None:intergenic | 45.0% | |
| TCTTTCTAAATCGAGGGAGG+GGG | + | chr4_3:69884705-69884724 | Msa0659480:intron | 45.0% | |
| AAGGACTTCAAATCTCGTCG+GGG | - | chr4_3:69884777-69884796 | None:intergenic | 45.0% | |
| GAAGGACTTCAAATCTCGTC+GGG | - | chr4_3:69884778-69884797 | None:intergenic | 45.0% | |
| GGAAGGACTTCAAATCTCGT+CGG | - | chr4_3:69884779-69884798 | None:intergenic | 45.0% | |
| GTCCTTCCCTTAAAGTGACA+AGG | + | chr4_3:69884791-69884810 | Msa0659480:intron | 45.0% | |
| !! | GACCTTGTCACTTTAAGGGA+AGG | - | chr4_3:69884796-69884815 | None:intergenic | 45.0% |
| AGACGGCCTGATACAAACTT+GGG | + | chr4_3:69884845-69884864 | Msa0659480:intron | 45.0% | |
| ! | TTTCTGGTGTGATCCTGCAA+TGG | - | chr4_3:69885033-69885052 | None:intergenic | 45.0% |
| ACGAACACAGAACTTGGGTT+GGG | - | chr4_3:69885331-69885350 | None:intergenic | 45.0% | |
| TACGAACACAGAACTTGGGT+TGG | - | chr4_3:69885332-69885351 | None:intergenic | 45.0% | |
| CATTTGGAAGGTGACTTGAG+TGG | - | chr4_3:69885408-69885427 | None:intergenic | 45.0% | |
| ! | TCCCTCATGGACTGAACATT+TGG | - | chr4_3:69885424-69885443 | None:intergenic | 45.0% |
| ! | TGTAGTGGAATTTGGGACTG+CGG | - | chr4_3:69885544-69885563 | None:intergenic | 45.0% |
| GAAAGAAATAGAGGGAGTCG+GGG | - | chr4_3:69885661-69885680 | None:intergenic | 45.0% | |
| GGAAAGAAATAGAGGGAGTC+GGG | - | chr4_3:69885662-69885681 | None:intergenic | 45.0% | |
| GGGAAAGAAATAGAGGGAGT+CGG | - | chr4_3:69885663-69885682 | None:intergenic | 45.0% | |
| AAGATGCCTGTCATTGCCAT+TGG | + | chr4_3:69885712-69885731 | Msa0659480:intron | 45.0% | |
| TGTTCTCCAATGGCAATGAC+AGG | - | chr4_3:69885721-69885740 | None:intergenic | 45.0% | |
| TCATTGCCATTGGAGAACAG+TGG | + | chr4_3:69885722-69885741 | Msa0659480:intron | 45.0% | |
| GGCACTCTGATCTCAGAAAA+AGG | - | chr4_3:69886043-69886062 | None:intergenic | 45.0% | |
| ! | GCCTTAATATTTTCCGGCTG+TGG | + | chr4_3:69886092-69886111 | Msa0659480:intron | 45.0% |
| GCCACAGCCGGAAAATATTA+AGG | - | chr4_3:69886096-69886115 | None:intergenic | 45.0% | |
| CATTTGTGAACAGGACTTGC+TGG | + | chr4_3:69886253-69886272 | Msa0659480:intron | 45.0% | |
| AATTGCAACTGCTGCTGCTG+AGG | - | chr4_3:69881276-69881295 | None:intergenic | 50.0% | |
| TCCTGATGATATGCCGTTGC+CGG | + | chr4_3:69881601-69881620 | Msa0659480:CDS | 50.0% | |
| TAACCTTCCGTTGGAGTGTG+TGG | + | chr4_3:69881796-69881815 | Msa0659480:CDS | 50.0% | |
| TTCCGTTGGAGTGTGTGGTT+CGG | + | chr4_3:69881801-69881820 | Msa0659480:CDS | 50.0% | |
| ! | TGAAGAGCACACCTGATGGA+TGG | + | chr4_3:69881993-69882012 | Msa0659480:CDS | 50.0% |
| CTTACAGCTGACCATCCATC+AGG | - | chr4_3:69882007-69882026 | None:intergenic | 50.0% | |
| ! | AGGTACTGTTACACAGCACG+TGG | + | chr4_3:69883074-69883093 | Msa0659480:intron | 50.0% |
| TACTGTTACACAGCACGTGG+CGG | + | chr4_3:69883077-69883096 | Msa0659480:CDS | 50.0% | |
| TGGTGCGGTAATACAGACCA+AGG | - | chr4_3:69884443-69884462 | None:intergenic | 50.0% | |
| GAAGCGTGACAAAGGAACCT+CGG | + | chr4_3:69884665-69884684 | Msa0659480:intron | 50.0% | |
| AAGCGTGACAAAGGAACCTC+GGG | + | chr4_3:69884666-69884685 | Msa0659480:intron | 50.0% | |
| AAAAGTCTGCATCAAGCCCG+AGG | - | chr4_3:69884685-69884704 | None:intergenic | 50.0% | |
| CAGACGGCCTGATACAAACT+TGG | + | chr4_3:69884844-69884863 | Msa0659480:intron | 50.0% | |
| TATAGGAGAATTGGCGCAGG+AGG | - | chr4_3:69885583-69885602 | None:intergenic | 50.0% | |
| TCTATGGCGTCAATGACAGC+AGG | - | chr4_3:69886284-69886303 | None:intergenic | 50.0% | |
| TGTCATTGACGCCATAGACG+AGG | + | chr4_3:69886286-69886305 | Msa0659480:CDS | 50.0% | |
| GTGCAGCTTCTTCTTCCTGT+AGG | - | chr4_3:69886576-69886595 | None:intergenic | 50.0% | |
| CGGTAAAATCAACCGTGCTC+AGG | - | chr4_3:69886892-69886911 | None:intergenic | 50.0% | |
| TCCGGCAACGGCATATCATC+AGG | - | chr4_3:69881605-69881624 | None:intergenic | 55.0% | |
| TCGTCAATGGCAAACCCGGT+GGG | - | chr4_3:69881632-69881651 | None:intergenic | 55.0% | |
| TTCGTCAATGGCAAACCCGG+TGG | - | chr4_3:69881633-69881652 | None:intergenic | 55.0% | |
| GAACCACACACTCCAACGGA+AGG | - | chr4_3:69881802-69881821 | None:intergenic | 55.0% | |
| CTCCGAACCACACACTCCAA+CGG | - | chr4_3:69881806-69881825 | None:intergenic | 55.0% | |
| ! | GTGGATGGCTTGCCAAGTGA+TGG | + | chr4_3:69884158-69884177 | Msa0659480:CDS | 55.0% |
| ! | TCTGCGAGGTGTCAACTCAG+TGG | - | chr4_3:69884828-69884847 | None:intergenic | 55.0% |
| ! | CTGAGTTGACACCTCGCAGA+CGG | + | chr4_3:69884828-69884847 | Msa0659480:intron | 55.0% |
| TTTGTATCAGGCCGTCTGCG+AGG | - | chr4_3:69884842-69884861 | None:intergenic | 55.0% | |
| CACGCACACATTCTCCCTCA+TGG | - | chr4_3:69885437-69885456 | None:intergenic | 55.0% | |
| ATTGGCGCAGGAGGAAAGGT+TGG | - | chr4_3:69885574-69885593 | None:intergenic | 55.0% | |
| GAGAATTGGCGCAGGAGGAA+AGG | - | chr4_3:69885578-69885597 | None:intergenic | 55.0% | |
| GGACAGATGGGAGCAGAGAA+TGG | - | chr4_3:69885630-69885649 | None:intergenic | 55.0% | |
| GGGGTGCAATGAGGACAGAT+GGG | - | chr4_3:69885642-69885661 | None:intergenic | 55.0% | |
| TCAATGGCAAACCCGGTGGG+AGG | - | chr4_3:69881629-69881648 | None:intergenic | 60.0% | |
| ! | GCGCAGGAGGAAAGGTTGGT+AGG | - | chr4_3:69885570-69885589 | None:intergenic | 60.0% |
| CGGGGTGCAATGAGGACAGA+TGG | - | chr4_3:69885643-69885662 | None:intergenic | 60.0% | |
| GTTGGAACGCATGCCACAGC+CGG | - | chr4_3:69886108-69886127 | None:intergenic | 60.0% | |
| GCAAACCCGGTGGGAGGTTC+CGG | - | chr4_3:69881623-69881642 | None:intergenic | 65.0% | |
| GAGGGAGTCGGGGTGCAATG+AGG | - | chr4_3:69885651-69885670 | None:intergenic | 65.0% | |
| CCGGTGGGAGGTTCCGGCAA+CGG | - | chr4_3:69881617-69881636 | None:intergenic | 70.0% | |
| CCGTTGCCGGAACCTCCCAC+CGG | + | chr4_3:69881614-69881633 | Msa0659480:CDS | 70.0% | |
| CGTTGCCGGAACCTCCCACC+GGG | + | chr4_3:69881615-69881634 | Msa0659480:CDS | 70.0% | |
| GCGAGCGCATACGCTGCAGC+AGG | - | chr4_3:69882938-69882957 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 69881208 | 69887010 | 69881208 | ID=Msa0659480;Name=Msa0659480 |
| chr4_3 | mRNA | 69881208 | 69887010 | 69881208 | ID=Msa0659480-mRNA-1;Parent=Msa0659480;Name=Msa0659480-mRNA-1;_AED=0.11;_eAED=0.11;_QI=49|1|1|1|0.9|0.81|11|352|335 |
| chr4_3 | exon | 69881208 | 69881697 | 69881208 | ID=Msa0659480-mRNA-1:exon:20525;Parent=Msa0659480-mRNA-1 |
| chr4_3 | exon | 69881782 | 69881879 | 69881782 | ID=Msa0659480-mRNA-1:exon:20526;Parent=Msa0659480-mRNA-1 |
| chr4_3 | exon | 69881979 | 69882021 | 69881979 | ID=Msa0659480-mRNA-1:exon:20527;Parent=Msa0659480-mRNA-1 |
| chr4_3 | exon | 69882905 | 69882987 | 69882905 | ID=Msa0659480-mRNA-1:exon:20528;Parent=Msa0659480-mRNA-1 |
| chr4_3 | exon | 69883076 | 69883140 | 69883076 | ID=Msa0659480-mRNA-1:exon:20529;Parent=Msa0659480-mRNA-1 |
| chr4_3 | exon | 69884144 | 69884205 | 69884144 | ID=Msa0659480-mRNA-1:exon:20530;Parent=Msa0659480-mRNA-1 |
| chr4_3 | exon | 69884928 | 69884987 | 69884928 | ID=Msa0659480-mRNA-1:exon:20531;Parent=Msa0659480-mRNA-1 |
| chr4_3 | exon | 69885884 | 69885916 | 69885884 | ID=Msa0659480-mRNA-1:exon:20532;Parent=Msa0659480-mRNA-1 |
| chr4_3 | exon | 69886266 | 69886331 | 69886266 | ID=Msa0659480-mRNA-1:exon:20533;Parent=Msa0659480-mRNA-1 |
| chr4_3 | exon | 69886580 | 69886930 | 69886580 | ID=Msa0659480-mRNA-1:exon:20534;Parent=Msa0659480-mRNA-1 |
| chr4_3 | exon | 69886953 | 69887010 | 69886953 | ID=Msa0659480-mRNA-1:exon:20535;Parent=Msa0659480-mRNA-1 |
| chr4_3 | five_prime_UTR | 69881208 | 69881256 | 69881208 | ID=Msa0659480-mRNA-1:five_prime_utr;Parent=Msa0659480-mRNA-1 |
| chr4_3 | CDS | 69881257 | 69881697 | 69881257 | ID=Msa0659480-mRNA-1:cds;Parent=Msa0659480-mRNA-1 |
| chr4_3 | CDS | 69881782 | 69881879 | 69881782 | ID=Msa0659480-mRNA-1:cds;Parent=Msa0659480-mRNA-1 |
| chr4_3 | CDS | 69881979 | 69882021 | 69881979 | ID=Msa0659480-mRNA-1:cds;Parent=Msa0659480-mRNA-1 |
| chr4_3 | CDS | 69882905 | 69882987 | 69882905 | ID=Msa0659480-mRNA-1:cds;Parent=Msa0659480-mRNA-1 |
| chr4_3 | CDS | 69883076 | 69883140 | 69883076 | ID=Msa0659480-mRNA-1:cds;Parent=Msa0659480-mRNA-1 |
| chr4_3 | CDS | 69884144 | 69884205 | 69884144 | ID=Msa0659480-mRNA-1:cds;Parent=Msa0659480-mRNA-1 |
| chr4_3 | CDS | 69884928 | 69884987 | 69884928 | ID=Msa0659480-mRNA-1:cds;Parent=Msa0659480-mRNA-1 |
| chr4_3 | CDS | 69885884 | 69885916 | 69885884 | ID=Msa0659480-mRNA-1:cds;Parent=Msa0659480-mRNA-1 |
| chr4_3 | CDS | 69886266 | 69886331 | 69886266 | ID=Msa0659480-mRNA-1:cds;Parent=Msa0659480-mRNA-1 |
| chr4_3 | CDS | 69886580 | 69886636 | 69886580 | ID=Msa0659480-mRNA-1:cds;Parent=Msa0659480-mRNA-1 |
| chr4_3 | three_prime_UTR | 69886637 | 69886930 | 69886637 | ID=Msa0659480-mRNA-1:three_prime_utr;Parent=Msa0659480-mRNA-1 |
| chr4_3 | three_prime_UTR | 69886953 | 69887010 | 69886953 | ID=Msa0659480-mRNA-1:three_prime_utr;Parent=Msa0659480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
