AlfalfaGEDB | Msa1238730

M. sativa cultivar zhongmu-4 / Msa1238730

KEGG: K09338
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1238730	XP_013444922.1	99.506	810	4	0	1	810	1	810	0.0	1670

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1238730	sp\|Q0WV12\|ANL2_ARATH	68.516	829	215	12	1	810	1	802	0.0	1107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1238730	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa1238730	0.801807	7.563742e-49	-8.615850e-47
Msa0004350	Msa1238730	0.828778	7.440208e-55	-8.615850e-47
Msa0007450	Msa1238730	0.801826	7.496168e-49	-8.615850e-47
Msa0008850	Msa1238730	0.815102	1.097655e-51	-8.615850e-47
Msa0012460	Msa1238730	0.815523	8.850455e-52	-8.615850e-47
Msa0017120	Msa1238730	0.852074	5.860091e-61	-8.615850e-47
Msa0020630	Msa1238730	0.812723	3.671887e-51	-8.615850e-47
Msa0037820	Msa1238730	0.831502	1.609740e-55	-8.615850e-47
Msa0043680	Msa1238730	0.800068	1.714434e-48	-8.615850e-47
Msa0043940	Msa1238730	0.840547	8.140660e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1238730	MtrunA17_Chr8g0350321	99.506	810	4	0	1	810	1	810	0.0	1670
Msa1238730	MtrunA17_Chr7g0246631	81.179	797	115	13	30	810	1	778	0.0	1277
Msa1238730	MtrunA17_Chr1g0203671	65.102	788	245	13	39	807	14	790	0.0	981
Msa1238730	MtrunA17_Chr2g0322731	55.659	751	274	13	77	809	59	768	0.0	788
Msa1238730	MtrunA17_Chr4g0024351	54.740	749	295	12	74	810	17	733	0.0	776
Msa1238730	MtrunA17_Chr6g0472471	52.536	769	335	13	58	806	7	765	0.0	764
Msa1238730	MtrunA17_Chr6g0481041	49.239	723	316	13	115	810	29	727	0.0	673
Msa1238730	MtrunA17_Chr2g0331581	45.833	696	326	11	119	809	143	792	0.0	630
Msa1238730	MtrunA17_Chr5g0410711	44.652	748	383	19	79	810	49	781	0.0	622
Msa1238730	MtrunA17_Chr5g0394111	46.800	500	249	7	314	806	157	646	3.10e-149	452

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1238730	AT4G00730.1	68.516	829	215	12	1	810	1	802	1107
Msa1238730	AT3G61150.1	65.663	830	242	17	1	810	1	807	1049
Msa1238730	AT4G04890.2	55.689	747	278	14	82	809	26	738	803
Msa1238730	AT4G04890.1	55.689	747	278	14	82	809	26	738	803
Msa1238730	AT4G21750.2	55.204	759	285	10	82	809	26	760	799
Msa1238730	AT4G21750.1	55.204	759	285	10	82	809	26	760	799
Msa1238730	AT4G21750.3	55.204	759	285	10	82	809	26	760	799
Msa1238730	AT4G21750.4	55.204	759	285	10	82	809	26	760	799
Msa1238730	AT1G05230.8	52.487	764	316	14	50	810	1	720	769
Msa1238730	AT1G05230.4	52.487	764	316	14	50	810	1	720	769

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Find 238 sgRNAs with CRISPR-Local

Find 440 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTAATTGGTGGGATT+TGG	0.226937	8_2:-19431857	Msa1238730:three_prime_UTR
AAACAAGACAAGTTAAGTTT+TGG	0.327392	8_2:-19437261	Msa1238730:CDS
AAACGTGCATAGACGAAGCG+GGG	0.675545	8_2:-19432309	Msa1238730:CDS
AAAGAAAACTTACACTAGCA+CGG	0.608182	8_2:+19433289	None:intergenic
AAAGATTGGAACTTAGCAAA+AGG	0.488155	8_2:-19437294	Msa1238730:CDS
AAATCAATGTTCAACTCACC+TGG	0.542999	8_2:-19437760	Msa1238730:CDS
AAATCGAAGAACACAAATGA+AGG	0.532956	8_2:-19437233	Msa1238730:intron
AAATGGAACAAGCTTAACCC+TGG	0.676038	8_2:-19433555	Msa1238730:CDS
AAATGTAATTGGTGGGATTT+GGG	0.251833	8_2:-19431856	Msa1238730:three_prime_UTR
AACAACGAAAGAATGCCATT+TGG	0.477954	8_2:-19437826	Msa1238730:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACTGAGAAAAACTTGAA+AGG	+	chr8_2:19431680-19431699	None:intergenic	30.0%
GAGAGAAAGAAAGAGAAAAA+AGG	+	chr8_2:19431772-19431791	None:intergenic	30.0%
CCTTAATCACAAGTAAATCT+TGG	+	chr8_2:19431983-19432002	None:intergenic	30.0%
CCAAGATTTACTTGTGATTA+AGG	-	chr8_2:19431980-19431999	Msa1238730:exon	30.0%
TTTACTTGTGATTAAGGGTT+TGG	-	chr8_2:19431986-19432005	Msa1238730:CDS	30.0%
AAAGATTGGAACTTAGCAAA+AGG	-	chr8_2:19432691-19432710	Msa1238730:intron	30.0%
AAATCGAAGAACACAAATGA+AGG	-	chr8_2:19432752-19432771	Msa1238730:intron	30.0%
CAAAAAGTTAGCAACACAAA+AGG	+	chr8_2:19432850-19432869	None:intergenic	30.0%
AGCTGAGAATATGTCTATAA+GGG	-	chr8_2:19432944-19432963	Msa1238730:intron	30.0%
CTAAAATCAGGTAATGATGA+AGG	+	chr8_2:19433206-19433225	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	19431664	19438343	19431664	ID=Msa1238730;Name=Msa1238730
chr8_2	mRNA	19431664	19438343	19431664	ID=Msa1238730-mRNA-1;Parent=Msa1238730;Name=Msa1238730-mRNA-1;_AED=0.04;_eAED=0.04;_QI=420\|1\|1\|1\|1\|1\|9\|321\|810
chr8_2	exon	19431664	19432371	19431664	ID=Msa1238730-mRNA-1:exon:7183;Parent=Msa1238730-mRNA-1
chr8_2	exon	19433302	19433669	19433302	ID=Msa1238730-mRNA-1:exon:7182;Parent=Msa1238730-mRNA-1
chr8_2	exon	19433899	19434073	19433899	ID=Msa1238730-mRNA-1:exon:7181;Parent=Msa1238730-mRNA-1
chr8_2	exon	19435733	19435945	19435733	ID=Msa1238730-mRNA-1:exon:7180;Parent=Msa1238730-mRNA-1
chr8_2	exon	19436124	19436225	19436124	ID=Msa1238730-mRNA-1:exon:7179;Parent=Msa1238730-mRNA-1
chr8_2	exon	19436445	19437119	19436445	ID=Msa1238730-mRNA-1:exon:7178;Parent=Msa1238730-mRNA-1
chr8_2	exon	19437234	19437351	19437234	ID=Msa1238730-mRNA-1:exon:7177;Parent=Msa1238730-mRNA-1
chr8_2	exon	19437432	19437646	19437432	ID=Msa1238730-mRNA-1:exon:7176;Parent=Msa1238730-mRNA-1
chr8_2	exon	19437744	19438343	19437744	ID=Msa1238730-mRNA-1:exon:7175;Parent=Msa1238730-mRNA-1
chr8_2	five_prime_UTR	19437924	19438343	19437924	ID=Msa1238730-mRNA-1:five_prime_utr;Parent=Msa1238730-mRNA-1
chr8_2	CDS	19437744	19437923	19437744	ID=Msa1238730-mRNA-1:cds;Parent=Msa1238730-mRNA-1
chr8_2	CDS	19437432	19437646	19437432	ID=Msa1238730-mRNA-1:cds;Parent=Msa1238730-mRNA-1
chr8_2	CDS	19437234	19437351	19437234	ID=Msa1238730-mRNA-1:cds;Parent=Msa1238730-mRNA-1
chr8_2	CDS	19436445	19437119	19436445	ID=Msa1238730-mRNA-1:cds;Parent=Msa1238730-mRNA-1
chr8_2	CDS	19436124	19436225	19436124	ID=Msa1238730-mRNA-1:cds;Parent=Msa1238730-mRNA-1
chr8_2	CDS	19435733	19435945	19435733	ID=Msa1238730-mRNA-1:cds;Parent=Msa1238730-mRNA-1
chr8_2	CDS	19433899	19434073	19433899	ID=Msa1238730-mRNA-1:cds;Parent=Msa1238730-mRNA-1
chr8_2	CDS	19433302	19433669	19433302	ID=Msa1238730-mRNA-1:cds;Parent=Msa1238730-mRNA-1
chr8_2	CDS	19431985	19432371	19431985	ID=Msa1238730-mRNA-1:cds;Parent=Msa1238730-mRNA-1
chr8_2	three_prime_UTR	19431664	19431984	19431664	ID=Msa1238730-mRNA-1:three_prime_utr;Parent=Msa1238730-mRNA-1

Gene Sequence

>Msa1238730

ATGAGTTTTGGGGGGTTTGTAGAGAACAATTCAGGAGGTGGTGGAGGTGTAAGAAACATAGGAGAAATCTCTTACAACAACGAAAGAATGCCATTTGGTTCTTTCTCTCAACCTCGTCTTGTTACTTCTCCAGCTTTGGCTAAATCAATGTTCAACTCACCTGGATTATCACTTGCACTTCAAACAAATATTGATGGACAAGAAGATGTGAATGGATCAATGCATGGGAATTATGAGCAAAATGGTTTGAGAAGAAGTAGAGAAGAGGAACAAAGTAGATCTGGTAGTGATAACTTGGATGGTGTTTCTGGTGATGAACAAGATGCTGATGATAAACCACCTAGGAAAAAGAGATATCACCGACACACTCCTCAACAGATTCAAGAGCTTGAAAGTTTGTTTAAGGAGTGTCCTCACCCAGATGAGAAACAAAGATTGGAACTTAGCAAAAGGCTTTGTTTGGAAACAAGACAAGTTAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAGACTCAACTGGAAAGGCATGAGAACAATTTGCTTAGGCAAGAGAATGATAAGCTTAGAGCTGAGAATATGTCTATAAGGGATGCAATGAGGAATCCTATTTGTTCAAATTGTGGTGGTCCAGCTATGATCGGCGAGATTTCACTCGAGGAACAACACCTTCGAATCGAGAATGCGAGGTTGAAGGACGAGCTAGATAGAGTTTGTGCACTTGCTGGAAAATTTTTAGGCCGTCCGATTTCTTCGCTACCCAACTCAAGTTTAGAGCTTGGTGTTGGAGGAAACAACAATAATGGTTTTAATGTGATGAATAATGTGCCTTCATCATTACCTGATTTTAGTTCAGGAATGTCTAATAACCCTTTAGCCATTGTGTCTCCTTCAAATAGACAAACATCTATGGTGACTACTGGCTTTGATAGATCGGTCGAAAGGTCTATGTTTCTTGAACTTGCTTTGGCTGCTATGGATGAGTTGGTTAAGATGGCACAAACTAATGACCCTCTTTGGATTAGGAGTATAGAAGGAGGAAGGGAAATTTTGAACCATGAGGAATATTTGAGGACATTCACTCCTTGCATTGGTTTGAAACCTAATGGTTTTGTTTCTGAGGCCTCAAGGGAAACTGGTACTGTCATCATCAATAGCTTGGCCCTCGTCGAGACTCTTATGGACTCGAATCGATGGATAGAGATGTTTCCTTGTATCATTGCAAGAACCTCCACAAATGAAGTTATATCTAATGGAATAAATGGAACAAGAAATGGTGCACTTCAACTTATGCAAGCTGAACTTCATGTGCTATCGCCTTTGGTTCCGGTTCGCGAGGTAAATTTCCTTAGGTTTTGCAAGCAACATGCAGAAGGGGTTTGGGCTGTGGTTGACGTGTCTATAGATACCATCAGAGAAACTTCTGGTGCTACAAGTTTTGTGAACTGTAGGAAGCTTCCCTCTGGTTGTGTTGTGCAAGATATGCCAAATGGTTACTCCAAGGTGACGTGGGTGGAACATACAGAATATGAGGAAAATCAAGTCCACCAGCTGTATAGACCTTTGTTAAGCTCAGGCATGGGTTTTGGCGCGTCTCGTTGGGTCGCTACCTTACAACGCCAGTGCGAGTGCCTTGCCATATTAATGTCCTCTGCCGCTCCCTCTCGAGACCACTCTGCAATAACAGCAGGAGGAAGGCGAAGCATGCTGAAGCTCGCCCAGCGAATGACAAACAACTTCTGTGCCGGGGTCTGTGCCTCAACGGTCCACAAATGGAACAAGCTTAACCCTGGTAATGTAGACGAAGATGTGAGGGTGATGACACGAAAGAGCGTCGATGATCCAGGCGAGCCACCAGGGATCGTGTTGAGCGCAGCCACGTCGGTGTGGCTCCCGGTTTCGCCTCAAAGACTGTTTGATTTTCTGCGTGACGAAAGGCTCCGTAGCGAATGGGATATACTATCAAATGGTGGTCCTATGCAAGAGATGGCTCATATTGCTAAAGGACAAGATCATGGCAACTGTGTTTCTCTTCTCCGTGCTAGTGCAATGAATTCCAACCAGAGTAGCATGTTGATACTACAAGAAACGTGCATAGACGAAGCGGGGTCGCTTGTCGTCTACGCGCCAGTTGATATTCCAGCTATGCATGTTGTCATGAACGGTGGCGATTCAGCTTACGTGGCATTACTACCATCCGGCTTCGCCATCGTCCCTGACGGTCCTGGGTCACGTGGACTAGAGAATGGCGATGCAACCGCAAATGGAGGCGGCGAGGCGCGTGTTAGCGGGTCCCTTTTAACCGTGGCGTTTCAAATCCTTGTGAATAGTCTTCCTACAGCAAAACTCACCGTGGAGTCAGTTGAAACAGTGAACAATCTCATTTCATGCACTGTTCAGAAAATCAAAGCAGCACTTCAATGTGAAAGCTGA

Protein sequence

>Msa1238730

MSFGGFVENNSGGGGGVRNIGEISYNNERMPFGSFSQPRLVTSPALAKSMFNSPGLSLALQTNIDGQEDVNGSMHGNYEQNGLRRSREEEQSRSGSDNLDGVSGDEQDADDKPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENNLLRQENDKLRAENMSIRDAMRNPICSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLPNSSLELGVGGNNNNGFNVMNNVPSSLPDFSSGMSNNPLAIVSPSNRQTSMVTTGFDRSVERSMFLELALAAMDELVKMAQTNDPLWIRSIEGGREILNHEEYLRTFTPCIGLKPNGFVSEASRETGTVIINSLALVETLMDSNRWIEMFPCIIARTSTNEVISNGINGTRNGALQLMQAELHVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGATSFVNCRKLPSGCVVQDMPNGYSKVTWVEHTEYEENQVHQLYRPLLSSGMGFGASRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNPGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGLENGDATANGGGEARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES*