AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0577090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577090 MtrunA17_Chr8g0384691 92.857 336 19 2 1 335 1 332 0.0 583
Msa0577090 MtrunA17_Chr3g0130681 65.385 208 70 1 121 328 101 306 1.03e-103 306
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577090 AT4G33480.1 68.720 211 65 1 121 330 124 334 8.55e-102 303

Find 73 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAGGACCTGTAAAATTAT+AGG 0.218189 4_1:-81266300 Msa0577090:three_prime_UTR
GTTGTTACTGGTGTTGCTTC+TGG 0.256857 4_1:-81271550 Msa0577090:CDS
TGTTAGTAATTGTTGTAATC+TGG 0.263737 4_1:-81266365 Msa0577090:three_prime_UTR
AAGAATTGGAATGAGAATTA+AGG 0.278335 4_1:+81271758 None:intergenic
AGTTAGTATTTGTTGTTATC+TGG 0.290200 4_1:-81266414 Msa0577090:three_prime_UTR
TAAGGACCTGTAAAATTATA+GGG 0.308395 4_1:-81266299 Msa0577090:three_prime_UTR
ACAGAAAATTGTAGAAGAAT+TGG 0.315728 4_1:+81271744 None:intergenic
GCAAACCCGGTGGGAGGTTC+CGG 0.321014 4_1:+81271493 None:intergenic
TCCTGATGATATGCCGTTGC+CGG 0.337706 4_1:-81271512 Msa0577090:CDS
GATGTTCAAAATGTTGTTAC+TGG 0.344264 4_1:-81271562 Msa0577090:CDS
AAATTCAGTCTCCTCGTCTA+TGG 0.365085 4_1:+81266818 None:intergenic
TTAATTACTTACGTGTCAAC+CGG 0.369775 4_1:+81271243 None:intergenic
GCTCAGGTCAATGAGCAAAT+TGG 0.397251 4_1:+81266242 None:intergenic
AAATAGATTGACTGTGCTCT+TGG 0.399674 4_1:-81266276 Msa0577090:three_prime_UTR
CATTTGTGAACAGGACTTGC+TGG 0.414686 4_1:-81266862 Msa0577090:intron
TTCTGCTTACTTCAACAAAT+CGG 0.416331 4_1:-81271450 Msa0577090:CDS
CAATAATTCAAAATCAGTAT+TGG 0.434374 4_1:+81271606 None:intergenic
TTCCGTTGGAGTGTGTGGTT+CGG 0.440368 4_1:-81271311 Msa0577090:CDS
TTATTTGTGCAGGGTGAGAA+TGG 0.443645 4_1:-81267243 Msa0577090:intron
TTGGAGGAAGAAGAAGAAGA+AGG 0.448446 4_1:+81271691 None:intergenic
CTTCAGTTGAAACTGAGGAT+TGG 0.448739 4_1:-81271642 Msa0577090:CDS
TCCGGCAACGGCATATCATC+AGG 0.470462 4_1:+81271511 None:intergenic
GGAGACTGAATTTAATGCCT+TGG 0.472300 4_1:-81266808 Msa0577090:CDS
TCCAACGGAAGGTTATTCAT+AGG 0.482809 4_1:+81271324 None:intergenic
GGGTTTGCCATTGACGAAAA+CGG 0.491547 4_1:-81271478 Msa0577090:CDS
CCGTTGCCGGAACCTCCCAC+CGG 0.491708 4_1:-81271499 Msa0577090:CDS
CGGTAAAATCAACCGTGCTC+AGG 0.495598 4_1:+81266226 None:intergenic
AACAAGATGCATGTGTATCT+TGG 0.502259 4_1:+81270152 None:intergenic
GACTGAATTTAATGCCTTGG+TGG 0.506705 4_1:-81266805 Msa0577090:intron
TGAATGTATGTTGCTTTGCC+CGG 0.514398 4_1:-81271262 Msa0577090:CDS
GCGAGCGCATACGCTGCAGC+AGG 0.519080 4_1:+81270174 None:intergenic
TCCTATGAATAACCTTCCGT+TGG 0.519345 4_1:-81271325 Msa0577090:CDS
GTGCTCTTCAATATTTGCAC+AGG 0.520741 4_1:+81271132 None:intergenic
AAAATTGATCATATACATAG+AGG 0.521725 4_1:+81266323 None:intergenic
AAATTGATCATATACATAGA+GGG 0.530400 4_1:+81266324 None:intergenic
ACTTCAGTTTGTTGTTGTGA+AGG 0.541807 4_1:-81268152 Msa0577090:intron
ACATGCATCTTGTTTACAGC+GGG 0.542894 4_1:-81270143 Msa0577090:intron
CCGGTGGGAGGTTCCGGCAA+CGG 0.543817 4_1:+81271499 None:intergenic
TGCACTTATTGAAGCAATGA+TGG 0.547958 4_1:-81266524 Msa0577090:CDS
AATTGCAACTGCTGCTGCTG+AGG 0.548569 4_1:+81271840 None:intergenic
CGTTGCCGGAACCTCCCACC+GGG 0.548585 4_1:-81271498 Msa0577090:CDS
ATCATCAGGATAAAATAAAG+AGG 0.555773 4_1:+81271525 None:intergenic
TATTTGTGCAGGGTGAGAAT+GGG 0.556129 4_1:-81267242 Msa0577090:intron
CTTACAGCTGACCATCCATC+AGG 0.563519 4_1:+81271108 None:intergenic
TAATTACTTACGTGTCAACC+GGG 0.577475 4_1:+81271244 None:intergenic
TCTATGGCGTCAATGACAGC+AGG 0.580809 4_1:+81266834 None:intergenic
TAACCTTCCGTTGGAGTGTG+TGG 0.581027 4_1:-81271316 Msa0577090:CDS
TTCACAACAACAAACTGAAG+TGG 0.585546 4_1:+81268154 None:intergenic
TTCGTCAATGGCAAACCCGG+TGG 0.591270 4_1:+81271483 None:intergenic
AAAACAAAGATAGATGAGAT+CGG 0.591300 4_1:+81266206 None:intergenic
ATATTGAAGAGCACACCTGA+TGG 0.594346 4_1:-81271123 Msa0577090:CDS
TGCAGATGATGGTAATGAAG+TGG 0.597707 4_1:-81268975 Msa0577090:intron
TGAAGAGCACACCTGATGGA+TGG 0.603729 4_1:-81271119 Msa0577090:CDS
TGAGAATGGGATGTTTCAAA+TGG 0.603878 4_1:-81267229 Msa0577090:CDS
TTTGCTCATTGACCTGAGCA+CGG 0.605141 4_1:-81266238 Msa0577090:three_prime_UTR
GTAATTTCTACACCATCACT+TGG 0.605477 4_1:+81268944 None:intergenic
GTGGATGGCTTGCCAAGTGA+TGG 0.606609 4_1:-81268956 Msa0577090:CDS
GATTACAACAATTACTAACA+AGG 0.607104 4_1:+81266368 None:intergenic
ACAAACTGAAGTGGTTCAGA+TGG 0.608941 4_1:+81268163 None:intergenic
CTCCGAACCACACACTCCAA+CGG 0.614714 4_1:+81271309 None:intergenic
GAATTCTTCAGTTGAAACTG+AGG 0.615714 4_1:-81271647 Msa0577090:CDS
TCGTCAATGGCAAACCCGGT+GGG 0.620091 4_1:+81271484 None:intergenic
ATTACAACAATTACTAACAA+GGG 0.630057 4_1:+81266369 None:intergenic
GAACCACACACTCCAACGGA+AGG 0.636707 4_1:+81271313 None:intergenic
CACATGCATCTTGTTTACAG+CGG 0.646015 4_1:-81270144 Msa0577090:CDS
TCAATGGCAAACCCGGTGGG+AGG 0.656601 4_1:+81271487 None:intergenic
TGTCATTGACGCCATAGACG+AGG 0.663191 4_1:-81266829 Msa0577090:CDS
TACTGTTACACAGCACGTGG+CGG 0.668638 4_1:-81270032 Msa0577090:CDS
AATTGATCATATACATAGAG+GGG 0.671889 4_1:+81266325 None:intergenic
GATATACTTGACTTCCACAC+AGG 0.674786 4_1:-81269990 Msa0577090:intron
GATGATGGTAATGAAGTGGA+TGG 0.699911 4_1:-81268971 Msa0577090:CDS
AGGTACTGTTACACAGCACG+TGG 0.735751 4_1:-81270035 Msa0577090:CDS
AATGAAGTCACATACCACCA+AGG 0.747149 4_1:+81266791 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAGGAA+AGG + chr4_1:81267754-81267773 None:intergenic 10.0%
!! GTAGAAAAAAAAAAAAAAAA+AGG + chr4_1:81267759-81267778 None:intergenic 10.0%
!!! ATTTTAAATAAGTTGTTAAC+AGG - chr4_1:81266680-81266699 Msa0577090:intron 15.0%
!!! TTTATTATTATTGATGACTA+TGG - chr4_1:81266854-81266873 Msa0577090:intron 15.0%
!! AAAATTAAATAACACGATTT+AGG + chr4_1:81267203-81267222 None:intergenic 15.0%
!!! TTATTTTAGTTTTTGTGATA+TGG - chr4_1:81267611-81267630 Msa0577090:intron 15.0%
!! AATTAAAATCTATGTTTGTA+TGG - chr4_1:81267649-81267668 Msa0577090:intron 15.0%
!! AAAATGAAAAGTTAATCTTT+AGG - chr4_1:81268903-81268922 Msa0577090:intron 15.0%
!!! GGTAATTTTATTAACTTAAT+TGG - chr4_1:81269123-81269142 Msa0577090:intron 15.0%
!!! GCTTCTAAATTTAAAATTAA+TGG + chr4_1:81269565-81269584 None:intergenic 15.0%
!! ATGAAAATATGTTAATAAGT+CGG - chr4_1:81270172-81270191 Msa0577090:CDS 15.0%
!!! TCTTATAATCCAATTTTATA+AGG - chr4_1:81270206-81270225 Msa0577090:CDS 15.0%
!! AGATATTATGATAATTAACT+TGG - chr4_1:81270763-81270782 Msa0577090:intron 15.0%
!!! TTTTGTAGTTAATTAATGAT+TGG + chr4_1:81270853-81270872 None:intergenic 15.0%
!! ATTAGATTACAGAGAAAAAA+GGG - chr4_1:81266141-81266160 Msa0577090:three_prime_UTR 20.0%
!!! TTTTGAAATGAAACTGAAAT+TGG + chr4_1:81266254-81266273 None:intergenic 20.0%
!! CAATAATTCAAAATCAGTAT+TGG + chr4_1:81266429-81266448 None:intergenic 20.0%
!!! ATATGGAATTTTATTAATGC+AGG - chr4_1:81266877-81266896 Msa0577090:intron 20.0%
!!! AAATTGAGATTTAAAATGCA+GGG + chr4_1:81266956-81266975 None:intergenic 20.0%
!! ATTCTTAATGTTATCTTGAA+TGG - chr4_1:81267023-81267042 Msa0577090:intron 20.0%
!! ATGCTTTAATAAGAGTTTAA+TGG - chr4_1:81267243-81267262 Msa0577090:intron 20.0%
!!! TTGTATGAACATTTTGAAAT+TGG + chr4_1:81267341-81267360 None:intergenic 20.0%
!! TCAAAATGTTCATACAAAAA+TGG - chr4_1:81267344-81267363 Msa0577090:intron 20.0%
!! CAAAATGTTCATACAAAAAT+GGG - chr4_1:81267345-81267364 Msa0577090:intron 20.0%
!!! CTGTAGATCATAATTTTTAA+AGG + chr4_1:81267427-81267446 None:intergenic 20.0%
!! ATACAAATACTTCATAGTTT+AGG + chr4_1:81267521-81267540 None:intergenic 20.0%
!! ATAACAAACAACGAAATATT+GGG + chr4_1:81267549-81267568 None:intergenic 20.0%
!!! AATATTTCGTTGTTTGTTAT+GGG - chr4_1:81267549-81267568 Msa0577090:intron 20.0%
!! CTTATTCTTGTGATATTATA+AGG - chr4_1:81268398-81268417 Msa0577090:intron 20.0%
!! GAAGTTGCTAAATTATAATA+CGG + chr4_1:81268552-81268571 None:intergenic 20.0%
!! AGGAAGTTATTATCAATATA+TGG - chr4_1:81268923-81268942 Msa0577090:intron 20.0%
!!! AGAAATTACATATTTTGATC+TGG - chr4_1:81269102-81269121 Msa0577090:intron 20.0%
!! TGAAGTGAAAAATAAAAAAC+GGG + chr4_1:81269258-81269277 None:intergenic 20.0%
!! GTGAAGTGAAAAATAAAAAA+CGG + chr4_1:81269259-81269278 None:intergenic 20.0%
!! ATAAGTTCATTTCAATGAAT+TGG + chr4_1:81269302-81269321 None:intergenic 20.0%
!!! AAATTTAAAATTAATGGACG+AGG + chr4_1:81269559-81269578 None:intergenic 20.0%
!!! AATAGTCTTTTTTTTTTTGC+AGG - chr4_1:81269820-81269839 Msa0577090:intron 20.0%
!! ATTTAACTAATATTCAGAAG+AGG - chr4_1:81269993-81270012 Msa0577090:CDS 20.0%
!! TGAAAATATGTTAATAAGTC+GGG - chr4_1:81270173-81270192 Msa0577090:CDS 20.0%
!! AAGAAAATATATAGGAGAAT+TGG + chr4_1:81270511-81270530 None:intergenic 20.0%
!! ATCTTAAACAAGTCTATAAA+AGG + chr4_1:81270615-81270634 None:intergenic 20.0%
!!! TAGATCTGAATTTTTACAAT+TGG - chr4_1:81270729-81270748 Msa0577090:intron 20.0%
!!! ATTGAATTTGAAACTAAGAA+AGG + chr4_1:81270890-81270909 None:intergenic 20.0%
!! TTTAGTAAATTATGATACGA+TGG - chr4_1:81271267-81271286 Msa0577090:CDS 20.0%
!! CATGGAATAAATAGTTAAAA+AGG + chr4_1:81271425-81271444 None:intergenic 20.0%
!! ATTACAACAATTACTAACAA+GGG + chr4_1:81271666-81271685 None:intergenic 20.0%
!! AAATTGATCATATACATAGA+GGG + chr4_1:81271711-81271730 None:intergenic 20.0%
!! AAAATTGATCATATACATAG+AGG + chr4_1:81271712-81271731 None:intergenic 20.0%
!!! TGTATATGATCAATTTTGTA+AGG - chr4_1:81271715-81271734 Msa0577090:CDS 20.0%
!!! TTTTGATTGTTTTTCAGTTT+TGG - chr4_1:81271853-81271872 Msa0577090:CDS 20.0%
! GATTAGATTACAGAGAAAAA+AGG - chr4_1:81266140-81266159 Msa0577090:three_prime_UTR 25.0%
! TTAGATTACAGAGAAAAAAG+GGG - chr4_1:81266142-81266161 Msa0577090:three_prime_UTR 25.0%
! AAGAATTGGAATGAGAATTA+AGG + chr4_1:81266277-81266296 None:intergenic 25.0%
! ACAGAAAATTGTAGAAGAAT+TGG + chr4_1:81266291-81266310 None:intergenic 25.0%
! ATCATCAGGATAAAATAAAG+AGG + chr4_1:81266510-81266529 None:intergenic 25.0%
! TTGACACGTAAGTAATTAAA+AGG - chr4_1:81266793-81266812 Msa0577090:intron 25.0%
!! ATTAAAAGGTTTTACAACGT+CGG - chr4_1:81266807-81266826 Msa0577090:CDS 25.0%
!! ATTATTGATGACTATGGATA+TGG - chr4_1:81266860-81266879 Msa0577090:intron 25.0%
!! CAAATTGAGATTTAAAATGC+AGG + chr4_1:81266957-81266976 None:intergenic 25.0%
! TCTAATGTGAGTTTACTTTA+AGG - chr4_1:81267056-81267075 Msa0577090:intron 25.0%
! TCTCAATAATTGATGAGAAA+AGG + chr4_1:81267165-81267184 None:intergenic 25.0%
! TTAAATAACACGATTTAGGT+TGG + chr4_1:81267199-81267218 None:intergenic 25.0%
! AAGCATTATTCAAAGAGATT+TGG + chr4_1:81267229-81267248 None:intergenic 25.0%
!!! TATGAACATTTTGAAATTGG+TGG + chr4_1:81267338-81267357 None:intergenic 25.0%
!!! GAAAATTGATGGATTTTCAT+TGG - chr4_1:81267375-81267394 Msa0577090:intron 25.0%
! CATAACAAACAACGAAATAT+TGG + chr4_1:81267550-81267569 None:intergenic 25.0%
!! CAATATTTCGTTGTTTGTTA+TGG - chr4_1:81267548-81267567 Msa0577090:intron 25.0%
! ATAAAAATGAGTGATATGCA+GGG + chr4_1:81267595-81267614 None:intergenic 25.0%
! AATAAAAATGAGTGATATGC+AGG + chr4_1:81267596-81267615 None:intergenic 25.0%
! AAAAAGAATGTCATTGTATG+TGG + chr4_1:81267707-81267726 None:intergenic 25.0%
!! GAAATATGTATTTTCGCATA+AGG + chr4_1:81267732-81267751 None:intergenic 25.0%
! TTAGCAAATACAACTCTAAA+CGG + chr4_1:81268242-81268261 None:intergenic 25.0%
!! CTAAAAACTTGTCAAGTTTT+TGG - chr4_1:81268258-81268277 Msa0577090:intron 25.0%
! ACTACTATAAACTAAAAGAG+AGG + chr4_1:81268322-81268341 None:intergenic 25.0%
!! TTTATAGTAGTGTTTTTCGT+GGG - chr4_1:81268331-81268350 Msa0577090:intron 25.0%
! TGATATTATAAGGAGATGTT+TGG - chr4_1:81268408-81268427 Msa0577090:intron 25.0%
! GATATTATAAGGAGATGTTT+GGG - chr4_1:81268409-81268428 Msa0577090:intron 25.0%
! GAATTTATGTTTACAACTAC+TGG - chr4_1:81268484-81268503 Msa0577090:intron 25.0%
! GAATTTATGTTTACAACTAC+TGG - chr4_1:81268484-81268503 Msa0577090:intron 25.0%
! TATAATTTCATGTGCAAGTT+AGG - chr4_1:81268669-81268688 Msa0577090:intron 25.0%
! TCTAATTATGCAACAATTCA+TGG + chr4_1:81268699-81268718 None:intergenic 25.0%
! CGAGTAACAATGAATATATA+TGG + chr4_1:81268768-81268787 None:intergenic 25.0%
! AATCAAGCATGAAAAAACTT+GGG + chr4_1:81268829-81268848 None:intergenic 25.0%
! CAGTTGGAAAAATGAAAATT+AGG + chr4_1:81268852-81268871 None:intergenic 25.0%
! TTATTATCAATATATGGCCA+GGG - chr4_1:81268929-81268948 Msa0577090:intron 25.0%
!!! TTGATTTTTTTTCTCAATCG+AGG - chr4_1:81269167-81269186 Msa0577090:intron 25.0%
!! TATTTTTCACTTCACTAGTA+TGG - chr4_1:81269264-81269283 Msa0577090:intron 25.0%
! AAAGACTTGATAAAACAGAT+GGG + chr4_1:81269399-81269418 None:intergenic 25.0%
! AAAAGACTTGATAAAACAGA+TGG + chr4_1:81269400-81269419 None:intergenic 25.0%
!! ATCTGTTTTATCAAGTCTTT+TGG - chr4_1:81269399-81269418 Msa0577090:intron 25.0%
! ACAAGAATAATGTATAGATC+AGG + chr4_1:81269436-81269455 None:intergenic 25.0%
!! AGAAAGTACAATCAATACTA+CGG + chr4_1:81269475-81269494 None:intergenic 25.0%
! ACTTCATGATATAAACACTA+TGG + chr4_1:81269503-81269522 None:intergenic 25.0%
!!! ACTTTTTCTTTCTAAATCGA+GGG - chr4_1:81269614-81269633 Msa0577090:intron 25.0%
!!! AACGTTTTCCTTTTAATTTC+TGG + chr4_1:81269963-81269982 None:intergenic 25.0%
! AAAAGGAAAACGTTTGATAT+TGG - chr4_1:81269969-81269988 Msa0577090:intron 25.0%
!!! TCTTATTTTCTATTTCTGCA+AGG + chr4_1:81270087-81270106 None:intergenic 25.0%
! GAAAATATGTTAATAAGTCG+GGG - chr4_1:81270174-81270193 Msa0577090:CDS 25.0%
! AATCAATCGCCTTATAAAAT+TGG + chr4_1:81270218-81270237 None:intergenic 25.0%
!!! TTTTATAAGGCGATTGATTT+AGG - chr4_1:81270219-81270238 Msa0577090:intron 25.0%
! TTTATACGAACACAGAATTT+GGG + chr4_1:81270250-81270269 None:intergenic 25.0%
!! TTTTATACGAACACAGAATT+TGG + chr4_1:81270251-81270270 None:intergenic 25.0%
! TAAACAAGTCTATAAAAGGA+GGG + chr4_1:81270611-81270630 None:intergenic 25.0%
! TTAAACAAGTCTATAAAAGG+AGG + chr4_1:81270612-81270631 None:intergenic 25.0%
!! TTTGAAACTAAGAAAGGAAT+TGG + chr4_1:81270884-81270903 None:intergenic 25.0%
! TCTCGTATGCATTTATAATA+TGG - chr4_1:81271052-81271071 Msa0577090:intron 25.0%
!! TACAGCTAAAAAAGTATATC+GGG + chr4_1:81271564-81271583 None:intergenic 25.0%
!! CTACAGCTAAAAAAGTATAT+CGG + chr4_1:81271565-81271584 None:intergenic 25.0%
!!! AGTTAGTATTTGTTGTTATC+TGG - chr4_1:81271618-81271637 Msa0577090:CDS 25.0%
! GATTACAACAATTACTAACA+AGG + chr4_1:81271667-81271686 None:intergenic 25.0%
! TGTTAGTAATTGTTGTAATC+TGG - chr4_1:81271667-81271686 Msa0577090:CDS 25.0%
! AATTGATCATATACATAGAG+GGG + chr4_1:81271710-81271729 None:intergenic 25.0%
! TAAGGACCTGTAAAATTATA+GGG - chr4_1:81271733-81271752 Msa0577090:CDS 25.0%
!! CTATTTCCCTATAATTTTAC+AGG + chr4_1:81271742-81271761 None:intergenic 25.0%
! AAAACAAAGATAGATGAGAT+CGG + chr4_1:81271829-81271848 None:intergenic 25.0%
!! AGTTTTACATGTCATTGTTT+AGG - chr4_1:81271898-81271917 Msa0577090:five_prime_UTR 25.0%
! AGGAGAATTTTTCTGTGATT+TGG + chr4_1:81266321-81266340 None:intergenic 30.0%
! ATTATTGCGTGATTTTTCTG+CGG - chr4_1:81266442-81266461 Msa0577090:three_prime_UTR 30.0%
GATGTTCAAAATGTTGTTAC+TGG - chr4_1:81266470-81266489 Msa0577090:three_prime_UTR 30.0%
TTCTGCTTACTTCAACAAAT+CGG - chr4_1:81266582-81266601 Msa0577090:intron 30.0%
TTAATTACTTACGTGTCAAC+CGG + chr4_1:81266792-81266811 None:intergenic 30.0%
GTTGCATCTAATCTTCATTT+AGG - chr4_1:81266993-81267012 Msa0577090:intron 30.0%
GTAAAACTATTTCACAGTGA+CGG + chr4_1:81267276-81267295 None:intergenic 30.0%
AAAATATCTCTGTCCATATC+AGG - chr4_1:81267977-81267996 Msa0577090:intron 30.0%
TAAAAAAATACTTGCCTGTG+TGG + chr4_1:81268059-81268078 None:intergenic 30.0%
ACATTAGTACTTCAGAGAAT+GGG + chr4_1:81268086-81268105 None:intergenic 30.0%
TTAGAGTGTAAACAAAGCAA+AGG - chr4_1:81268121-81268140 Msa0577090:intron 30.0%
TAGAGTGTAAACAAAGCAAA+GGG - chr4_1:81268122-81268141 Msa0577090:intron 30.0%
! GTTTATAGTAGTGTTTTTCG+TGG - chr4_1:81268330-81268349 Msa0577090:intron 30.0%
TTCATTCTCCTTAGTAAGAA+GGG + chr4_1:81268366-81268385 None:intergenic 30.0%
ATTCATTCTCCTTAGTAAGA+AGG + chr4_1:81268367-81268386 None:intergenic 30.0%
TATCACAAGAATAAGTGACT+TGG + chr4_1:81268393-81268412 None:intergenic 30.0%
CAACTACTGGACTTAAAATT+TGG - chr4_1:81268497-81268516 Msa0577090:intron 30.0%
ATCAAGCATGAAAAAACTTG+GGG + chr4_1:81268828-81268847 None:intergenic 30.0%
GAATCAAGCATGAAAAAACT+TGG + chr4_1:81268830-81268849 None:intergenic 30.0%
GTTATTATCAATATATGGCC+AGG - chr4_1:81268928-81268947 Msa0577090:intron 30.0%
! TAATACCATTTTGCAGATGA+TGG - chr4_1:81269046-81269065 Msa0577090:intron 30.0%
TAAGTGTTTCCAAGTTAGTA+AGG - chr4_1:81269198-81269217 Msa0577090:intron 30.0%
! GCTTTGTATAGATGCATTTT+TGG - chr4_1:81269525-81269544 Msa0577090:intron 30.0%
! TAAATTTAGAAGCGTGACAA+AGG - chr4_1:81269572-81269591 Msa0577090:intron 30.0%
!! GACTTTTTCTTTCTAAATCG+AGG - chr4_1:81269613-81269632 Msa0577090:intron 30.0%
GATAGTTGTAAAGTGACTAT+TGG + chr4_1:81269670-81269689 None:intergenic 30.0%
CTTAACATTATTCCCATAGT+GGG + chr4_1:81270128-81270147 None:intergenic 30.0%
TCTTAACATTATTCCCATAG+TGG + chr4_1:81270129-81270148 None:intergenic 30.0%
!! TAGGTTTTGTAGTGGAATTT+GGG + chr4_1:81270470-81270489 None:intergenic 30.0%
AGACGGAGAAGAAAATATAT+AGG + chr4_1:81270519-81270538 None:intergenic 30.0%
GGAAAAAGGAAAGAAATAGA+GGG + chr4_1:81270588-81270607 None:intergenic 30.0%
AAACAAGTCTATAAAAGGAG+GGG + chr4_1:81270610-81270629 None:intergenic 30.0%
AGTAAAAGGGGAGAAAAAAT+AGG + chr4_1:81270937-81270956 None:intergenic 30.0%
TCTCAGAAAAAGGAGTAAAA+GGG + chr4_1:81270950-81270969 None:intergenic 30.0%
ATCTCAGAAAAAGGAGTAAA+AGG + chr4_1:81270951-81270970 None:intergenic 30.0%
ATATTAAGGCAACCAAAATC+TGG + chr4_1:81270999-81271018 None:intergenic 30.0%
! TTGGTTGCCTTAATATTTTC+CGG - chr4_1:81271003-81271022 Msa0577090:intron 30.0%
TCGTCAAACTTAATGTAACA+TGG + chr4_1:81271443-81271462 None:intergenic 30.0%
GTAAGGACCTGTAAAATTAT+AGG - chr4_1:81271732-81271751 Msa0577090:CDS 30.0%
ACAGAGAAAAAAGGGGAAAA+AGG - chr4_1:81266149-81266168 Msa0577090:three_prime_UTR 35.0%
CAGAGAAAAAAGGGGAAAAA+GGG - chr4_1:81266150-81266169 Msa0577090:three_prime_UTR 35.0%
! TTTCTTCGTCTTCTTTTTGG+AGG + chr4_1:81266360-81266379 None:intergenic 35.0%
! CCTTTTCTTCGTCTTCTTTT+TGG + chr4_1:81266363-81266382 None:intergenic 35.0%
CCAAAAAGAAGACGAAGAAA+AGG - chr4_1:81266360-81266379 Msa0577090:three_prime_UTR 35.0%
GAATTCTTCAGTTGAAACTG+AGG - chr4_1:81266385-81266404 Msa0577090:three_prime_UTR 35.0%
! AATTTCACCGTTTTCGTCAA+TGG + chr4_1:81266564-81266583 None:intergenic 35.0%
TAATTACTTACGTGTCAACC+GGG + chr4_1:81266791-81266810 None:intergenic 35.0%
TAAAGAAGCTCATTTGTCGA+TGG - chr4_1:81267083-81267102 Msa0577090:intron 35.0%
AAAGAAGCTCATTTGTCGAT+GGG - chr4_1:81267084-81267103 Msa0577090:intron 35.0%
! TTGAAATTGGTGGTATGACA+TGG + chr4_1:81267328-81267347 None:intergenic 35.0%
!! GATGGATTTTCATTGGATGT+CGG - chr4_1:81267382-81267401 Msa0577090:intron 35.0%
!! TTTCGTTGTTTGTTATGGGA+TGG - chr4_1:81267553-81267572 Msa0577090:intron 35.0%
TTGTGATATGGACAGATAAC+AGG - chr4_1:81267623-81267642 Msa0577090:intron 35.0%
CAGAAGGAAGACATGAATTT+GGG + chr4_1:81267800-81267819 None:intergenic 35.0%
ACAGAAGGAAGACATGAATT+TGG + chr4_1:81267801-81267820 None:intergenic 35.0%
AACAAGATGCATGTGTATCT+TGG + chr4_1:81267883-81267902 None:intergenic 35.0%
GACATTAGTACTTCAGAGAA+TGG + chr4_1:81268087-81268106 None:intergenic 35.0%
AGCAAAGGGTTTATTCAGTT+TGG - chr4_1:81268136-81268155 Msa0577090:intron 35.0%
GAATCGTACTACACTTTAAC+AGG + chr4_1:81268184-81268203 None:intergenic 35.0%
ATTTAGACCCCTTCTTACTA+AGG - chr4_1:81268355-81268374 Msa0577090:intron 35.0%
TCATTCTCCTTAGTAAGAAG+GGG + chr4_1:81268365-81268384 None:intergenic 35.0%
CAACTACTGGACTTAAAGTT+TGG - chr4_1:81268620-81268639 Msa0577090:intron 35.0%
AATTTCATGTGCAAGTTAGG+TGG - chr4_1:81268672-81268691 Msa0577090:intron 35.0%
CATTACCATCATCTGCAAAA+TGG + chr4_1:81269054-81269073 None:intergenic 35.0%
GTAATTTCTACACCATCACT+TGG + chr4_1:81269091-81269110 None:intergenic 35.0%
! AGTTTGCTTCCTTACTAACT+TGG + chr4_1:81269210-81269229 None:intergenic 35.0%
! AGTGTGTTATTGTTCTTCCT+TGG - chr4_1:81269341-81269360 Msa0577090:intron 35.0%
! TTTTCTTTCTAAATCGAGGG+AGG - chr4_1:81269617-81269636 Msa0577090:intron 35.0%
TTTCTTTCTAAATCGAGGGA+GGG - chr4_1:81269618-81269637 Msa0577090:intron 35.0%
!! GTTTGACCTTGTCACTTTAA+GGG + chr4_1:81269715-81269734 None:intergenic 35.0%
!! AGTTTGACCTTGTCACTTTA+AGG + chr4_1:81269716-81269735 None:intergenic 35.0%
TACAAACTTGGGTAGAACTT+TGG - chr4_1:81269771-81269790 Msa0577090:intron 35.0%
TTCACAACAACAAACTGAAG+TGG + chr4_1:81269881-81269900 None:intergenic 35.0%
!! ACTTCAGTTTGTTGTTGTGA+AGG - chr4_1:81269880-81269899 Msa0577090:intron 35.0%
AGATTGAAAGTAACCATTGC+AGG - chr4_1:81269931-81269950 Msa0577090:intron 35.0%
GGATCACACCAGAAATTAAA+AGG - chr4_1:81269952-81269971 Msa0577090:intron 35.0%
ATGAAATGATACTCCCACTA+TGG - chr4_1:81270112-81270131 Msa0577090:intron 35.0%
TGAAATGATACTCCCACTAT+GGG - chr4_1:81270113-81270132 Msa0577090:intron 35.0%
AAGCCTATCCAAGATTCATA+AGG - chr4_1:81270269-81270288 Msa0577090:intron 35.0%
TGACCTTATGAATCTTGGAT+AGG + chr4_1:81270275-81270294 None:intergenic 35.0%
AGAGATGACCTTATGAATCT+TGG + chr4_1:81270280-81270299 None:intergenic 35.0%
GTCTCACATTGAATATGATC+TGG - chr4_1:81270384-81270403 Msa0577090:intron 35.0%
GGAATTGAAAACATACTTCC+AGG + chr4_1:81270410-81270429 None:intergenic 35.0%
!! GTAGGTTTTGTAGTGGAATT+TGG + chr4_1:81270471-81270490 None:intergenic 35.0%
CAGAGAATGGTGAATAAAGA+CGG + chr4_1:81270536-81270555 None:intergenic 35.0%
GGGAAAAAGGAAAGAAATAG+AGG + chr4_1:81270589-81270608 None:intergenic 35.0%
AACAAGTCTATAAAAGGAGG+GGG + chr4_1:81270609-81270628 None:intergenic 35.0%
CTACTAGTATTCACAGAGTA+GGG + chr4_1:81270692-81270711 None:intergenic 35.0%
ACTACTAGTATTCACAGAGT+AGG + chr4_1:81270693-81270712 None:intergenic 35.0%
TGAGAATGGGATGTTTCAAA+TGG - chr4_1:81270803-81270822 Msa0577090:intron 35.0%
! AAATGGCTGATGATGTAAGT+AGG - chr4_1:81270820-81270839 Msa0577090:intron 35.0%
CTCAGAAAAAGGAGTAAAAG+GGG + chr4_1:81270949-81270968 None:intergenic 35.0%
! ACAAAAGGTTGTCCAGATTT+TGG - chr4_1:81270984-81271003 Msa0577090:intron 35.0%
TGCATACGAGAAACAAAAGT+TGG + chr4_1:81271043-81271062 None:intergenic 35.0%
GCTTGTGATTTAATCTGCTA+AGG - chr4_1:81271144-81271163 Msa0577090:intron 35.0%
! TGACTTTTGCAACACACTTA+TGG + chr4_1:81271339-81271358 None:intergenic 35.0%
TAGGAAACACAACACAAACA+TGG + chr4_1:81271474-81271493 None:intergenic 35.0%
TGCACTTATTGAAGCAATGA+TGG - chr4_1:81271508-81271527 Msa0577090:CDS 35.0%
AAATAGATTGACTGTGCTCT+TGG - chr4_1:81271756-81271775 Msa0577090:CDS 35.0%
! AAAAGGGGAAAAAGGGTGTA+TGG - chr4_1:81266157-81266176 Msa0577090:three_prime_UTR 40.0%
TTGGAGGAAGAAGAAGAAGA+AGG + chr4_1:81266344-81266363 None:intergenic 40.0%
CTTCAGTTGAAACTGAGGAT+TGG - chr4_1:81266390-81266409 Msa0577090:three_prime_UTR 40.0%
! TCACCATAGTGAGTATTGCT+TGG - chr4_1:81266609-81266628 Msa0577090:intron 40.0%
GAACCAAGCAATACTCACTA+TGG + chr4_1:81266615-81266634 None:intergenic 40.0%
TCCTATGAATAACCTTCCGT+TGG - chr4_1:81266707-81266726 Msa0577090:intron 40.0%
TCCAACGGAAGGTTATTCAT+AGG + chr4_1:81266711-81266730 None:intergenic 40.0%
!! TGAATGTATGTTGCTTTGCC+CGG - chr4_1:81266770-81266789 Msa0577090:intron 40.0%
GTGCTCTTCAATATTTGCAC+AGG + chr4_1:81266903-81266922 None:intergenic 40.0%
! ATATTGAAGAGCACACCTGA+TGG - chr4_1:81266909-81266928 Msa0577090:intron 40.0%
!! AAAAGGCGCTAAACAACAGT+TGG + chr4_1:81267148-81267167 None:intergenic 40.0%
TGGGATGATGCGAAAATTGA+TGG - chr4_1:81267364-81267383 Msa0577090:intron 40.0%
TACTCATTCATCACAGTCAC+AGG - chr4_1:81267479-81267498 Msa0577090:intron 40.0%
ACTCATTCATCACAGTCACA+GGG - chr4_1:81267480-81267499 Msa0577090:intron 40.0%
! TCGCTGATCTAAAACACAGA+AGG + chr4_1:81267816-81267835 None:intergenic 40.0%
!! TTCTGTGTTTTAGATCAGCG+AGG - chr4_1:81267815-81267834 Msa0577090:intron 40.0%
! CACATGCATCTTGTTTACAG+CGG - chr4_1:81267888-81267907 Msa0577090:intron 40.0%
! ACATGCATCTTGTTTACAGC+GGG - chr4_1:81267889-81267908 Msa0577090:intron 40.0%
CTGTGTAACAGTACCTGATA+TGG + chr4_1:81267993-81268012 None:intergenic 40.0%
GATATACTTGACTTCCACAC+AGG - chr4_1:81268042-81268061 Msa0577090:intron 40.0%
! ATAAGGAGATGTTTGGGACT+TGG - chr4_1:81268415-81268434 Msa0577090:intron 40.0%
! TAAGGAGATGTTTGGGACTT+GGG - chr4_1:81268416-81268435 Msa0577090:intron 40.0%
TCACAATCAGACATGACAGT+TGG + chr4_1:81268868-81268887 None:intergenic 40.0%
! TGCAGATGATGGTAATGAAG+TGG - chr4_1:81269057-81269076 Msa0577090:intron 40.0%
! GATGATGGTAATGAAGTGGA+TGG - chr4_1:81269061-81269080 Msa0577090:intron 40.0%
AAACAAAAGCAACACTGGTG+CGG + chr4_1:81269376-81269395 None:intergenic 40.0%
ATGGGAAACAAAAGCAACAC+TGG + chr4_1:81269381-81269400 None:intergenic 40.0%
!! TCAAGTCTTTTGGAAGATCG+TGG - chr4_1:81269409-81269428 Msa0577090:intron 40.0%
TTCTTTCTAAATCGAGGGAG+GGG - chr4_1:81269619-81269638 Msa0577090:intron 40.0%
GTTCTACCCAAGTTTGTATC+AGG + chr4_1:81269769-81269788 None:intergenic 40.0%
ACAAACTGAAGTGGTTCAGA+TGG + chr4_1:81269872-81269891 None:intergenic 40.0%
CTTTCAGAAGCTTGTACAAG+TGG + chr4_1:81269913-81269932 None:intergenic 40.0%
AAGAGGTTCTTCTCTCTTCT+AGG - chr4_1:81270010-81270029 Msa0577090:CDS 40.0%
! ACGAACACAGAATTTGGGTT+GGG + chr4_1:81270245-81270264 None:intergenic 40.0%
TACGAACACAGAATTTGGGT+TGG + chr4_1:81270246-81270265 None:intergenic 40.0%
ACATTGAATATGATCTGGCC+TGG - chr4_1:81270389-81270408 Msa0577090:intron 40.0%
TGAGAGTCGTTCTCATTTCT+AGG + chr4_1:81270431-81270450 None:intergenic 40.0%
!!! AAGGTTGGTAGGTTTTGTAG+TGG + chr4_1:81270478-81270497 None:intergenic 40.0%
ATATATAGGAGAATTGGCGC+AGG + chr4_1:81270505-81270524 None:intergenic 40.0%
AGGAAAGAAATAGAGGGAGT+CGG + chr4_1:81270582-81270601 None:intergenic 40.0%
CTATAAAAGGAGGGGGAAAA+AGG + chr4_1:81270602-81270621 None:intergenic 40.0%
ATAATGCCACTGTTCTCCAA+TGG + chr4_1:81270649-81270668 None:intergenic 40.0%
! AACTTGGCCTTTATTTGTGC+AGG - chr4_1:81270779-81270798 Msa0577090:intron 40.0%
! ACTTGGCCTTTATTTGTGCA+GGG - chr4_1:81270780-81270799 Msa0577090:intron 40.0%
TTCTCACCCTGCACAAATAA+AGG + chr4_1:81270789-81270808 None:intergenic 40.0%
TTATTTGTGCAGGGTGAGAA+TGG - chr4_1:81270789-81270808 Msa0577090:intron 40.0%
TATTTGTGCAGGGTGAGAAT+GGG - chr4_1:81270790-81270809 Msa0577090:intron 40.0%
!! ATCAGAGTGCCACTTACAAA+AGG - chr4_1:81270969-81270988 Msa0577090:intron 40.0%
! TCTGGACAACCTTTTGTAAG+TGG + chr4_1:81270981-81271000 None:intergenic 40.0%
CTAAGGCAACATTTGTGAAC+AGG - chr4_1:81271161-81271180 Msa0577090:intron 40.0%
AAATTCAGTCTCCTCGTCTA+TGG + chr4_1:81271217-81271236 None:intergenic 40.0%
GGAGACTGAATTTAATGCCT+TGG - chr4_1:81271224-81271243 Msa0577090:intron 40.0%
GACTGAATTTAATGCCTTGG+TGG - chr4_1:81271227-81271246 Msa0577090:intron 40.0%
AATGAAGTCACATACCACCA+AGG + chr4_1:81271244-81271263 None:intergenic 40.0%
GTTTGTGTTGTGTTTCCTAC+AGG - chr4_1:81271475-81271494 Msa0577090:CDS 40.0%
GAGGAAGAAGAAGAAGAAGG+AGG + chr4_1:81266341-81266360 None:intergenic 45.0%
!! GTTGTTACTGGTGTTGCTTC+TGG - chr4_1:81266482-81266501 Msa0577090:exon 45.0%
! GTTTTCGTCAATGGCAAACC+CGG + chr4_1:81266555-81266574 None:intergenic 45.0%
GGGTTTGCCATTGACGAAAA+CGG - chr4_1:81266554-81266573 Msa0577090:intron 45.0%
!! TGTGTTTTAGATCAGCGAGG+AGG - chr4_1:81267818-81267837 Msa0577090:intron 45.0%
GAATGCGTTTATCATCACCC+TGG + chr4_1:81268949-81268968 None:intergenic 45.0%
TCTTTCTAAATCGAGGGAGG+GGG - chr4_1:81269620-81269639 Msa0577090:intron 45.0%
AAGGACTTCAAATCTCGTCG+GGG + chr4_1:81269692-81269711 None:intergenic 45.0%
GAAGGACTTCAAATCTCGTC+GGG + chr4_1:81269693-81269712 None:intergenic 45.0%
GGAAGGACTTCAAATCTCGT+CGG + chr4_1:81269694-81269713 None:intergenic 45.0%
GTCCTTCCCTTAAAGTGACA+AGG - chr4_1:81269706-81269725 Msa0577090:intron 45.0%
!! GACCTTGTCACTTTAAGGGA+AGG + chr4_1:81269711-81269730 None:intergenic 45.0%
AGACGGCCTGATACAAACTT+GGG - chr4_1:81269760-81269779 Msa0577090:intron 45.0%
! TTTCTGGTGTGATCCTGCAA+TGG + chr4_1:81269947-81269966 None:intergenic 45.0%
CATTTGGAAGGTGACTTGAG+TGG + chr4_1:81270322-81270341 None:intergenic 45.0%
ACCTTCCAAATGTTCAGTCC+TGG - chr4_1:81270330-81270349 Msa0577090:intron 45.0%
TCCAGGACTGAACATTTGGA+AGG + chr4_1:81270334-81270353 None:intergenic 45.0%
CATGTCCAGGACTGAACATT+TGG + chr4_1:81270338-81270357 None:intergenic 45.0%
AATGTTCAGTCCTGGACATG+AGG - chr4_1:81270338-81270357 Msa0577090:intron 45.0%
ATGTTCAGTCCTGGACATGA+GGG - chr4_1:81270339-81270358 Msa0577090:intron 45.0%
! TGTAGTGGAATTTGGGACTG+CGG + chr4_1:81270463-81270482 None:intergenic 45.0%
GAAAGAAATAGAGGGAGTCG+GGG + chr4_1:81270580-81270599 None:intergenic 45.0%
GGAAAGAAATAGAGGGAGTC+GGG + chr4_1:81270581-81270600 None:intergenic 45.0%
AAGATGCCTGTCATTGCCAT+TGG - chr4_1:81270630-81270649 Msa0577090:intron 45.0%
TGTTCTCCAATGGCAATGAC+AGG + chr4_1:81270639-81270658 None:intergenic 45.0%
TCATTGCCATTGGAGAACAG+TGG - chr4_1:81270640-81270659 Msa0577090:intron 45.0%
GGCACTCTGATCTCAGAAAA+AGG + chr4_1:81270960-81270979 None:intergenic 45.0%
! GCCTTAATATTTTCCGGCTG+TGG - chr4_1:81271009-81271028 Msa0577090:intron 45.0%
GCCACAGCCGGAAAATATTA+AGG + chr4_1:81271013-81271032 None:intergenic 45.0%
CATTTGTGAACAGGACTTGC+TGG - chr4_1:81271170-81271189 Msa0577090:intron 45.0%
GCTCAGGTCAATGAGCAAAT+TGG + chr4_1:81271793-81271812 None:intergenic 45.0%
TTTGCTCATTGACCTGAGCA+CGG - chr4_1:81271794-81271813 Msa0577090:CDS 45.0%
AATTGCAACTGCTGCTGCTG+AGG + chr4_1:81266195-81266214 None:intergenic 50.0%
TCCTGATGATATGCCGTTGC+CGG - chr4_1:81266520-81266539 Msa0577090:CDS 50.0%
TAACCTTCCGTTGGAGTGTG+TGG - chr4_1:81266716-81266735 Msa0577090:intron 50.0%
TTCCGTTGGAGTGTGTGGTT+CGG - chr4_1:81266721-81266740 Msa0577090:intron 50.0%
! TGAAGAGCACACCTGATGGA+TGG - chr4_1:81266913-81266932 Msa0577090:intron 50.0%
CTTACAGCTGACCATCCATC+AGG + chr4_1:81266927-81266946 None:intergenic 50.0%
! AGGTACTGTTACACAGCACG+TGG - chr4_1:81267997-81268016 Msa0577090:intron 50.0%
TACTGTTACACAGCACGTGG+CGG - chr4_1:81268000-81268019 Msa0577090:intron 50.0%
TGGTGCGGTAATACAGACCA+AGG + chr4_1:81269361-81269380 None:intergenic 50.0%
GAAGCGTGACAAAGGAACCT+CGG - chr4_1:81269580-81269599 Msa0577090:intron 50.0%
AAGCGTGACAAAGGAACCTC+GGG - chr4_1:81269581-81269600 Msa0577090:intron 50.0%
AAAAGTCTGCATCAAGCCCG+AGG + chr4_1:81269600-81269619 None:intergenic 50.0%
CAGACGGCCTGATACAAACT+TGG - chr4_1:81269759-81269778 Msa0577090:intron 50.0%
ACACAATCTCCCTCATGTCC+AGG + chr4_1:81270351-81270370 None:intergenic 50.0%
TATAGGAGAATTGGCGCAGG+AGG + chr4_1:81270502-81270521 None:intergenic 50.0%
TCTATGGCGTCAATGACAGC+AGG + chr4_1:81271201-81271220 None:intergenic 50.0%
TGTCATTGACGCCATAGACG+AGG - chr4_1:81271203-81271222 Msa0577090:intron 50.0%
GTGCAGCTTCTTCTTCCTGT+AGG + chr4_1:81271493-81271512 None:intergenic 50.0%
CGGTAAAATCAACCGTGCTC+AGG + chr4_1:81271809-81271828 None:intergenic 50.0%
TCCGGCAACGGCATATCATC+AGG + chr4_1:81266524-81266543 None:intergenic 55.0%
TCGTCAATGGCAAACCCGGT+GGG + chr4_1:81266551-81266570 None:intergenic 55.0%
TTCGTCAATGGCAAACCCGG+TGG + chr4_1:81266552-81266571 None:intergenic 55.0%
GAACCACACACTCCAACGGA+AGG + chr4_1:81266722-81266741 None:intergenic 55.0%
CTCCGAACCACACACTCCAA+CGG + chr4_1:81266726-81266745 None:intergenic 55.0%
! GTGGATGGCTTGCCAAGTGA+TGG - chr4_1:81269076-81269095 Msa0577090:intron 55.0%
! TCTGCGAGGTGTCAACTCAG+TGG + chr4_1:81269743-81269762 None:intergenic 55.0%
! CTGAGTTGACACCTCGCAGA+CGG - chr4_1:81269743-81269762 Msa0577090:intron 55.0%
TTTGTATCAGGCCGTCTGCG+AGG + chr4_1:81269757-81269776 None:intergenic 55.0%
ATTGGCGCAGGAGGAAAGGT+TGG + chr4_1:81270493-81270512 None:intergenic 55.0%
GAGAATTGGCGCAGGAGGAA+AGG + chr4_1:81270497-81270516 None:intergenic 55.0%
GGACAGATGGGAGCAGAGAA+TGG + chr4_1:81270549-81270568 None:intergenic 55.0%
GGGGTGCAATGAGGACAGAT+GGG + chr4_1:81270561-81270580 None:intergenic 55.0%
TCAATGGCAAACCCGGTGGG+AGG + chr4_1:81266548-81266567 None:intergenic 60.0%
! GCGCAGGAGGAAAGGTTGGT+AGG + chr4_1:81270489-81270508 None:intergenic 60.0%
CGGGGTGCAATGAGGACAGA+TGG + chr4_1:81270562-81270581 None:intergenic 60.0%
GTTGGAACGCATGCCACAGC+CGG + chr4_1:81271025-81271044 None:intergenic 60.0%
GCAAACCCGGTGGGAGGTTC+CGG + chr4_1:81266542-81266561 None:intergenic 65.0%
GAGGGAGTCGGGGTGCAATG+AGG + chr4_1:81270570-81270589 None:intergenic 65.0%
CCGGTGGGAGGTTCCGGCAA+CGG + chr4_1:81266536-81266555 None:intergenic 70.0%
CCGTTGCCGGAACCTCCCAC+CGG - chr4_1:81266533-81266552 Msa0577090:CDS 70.0%
CGTTGCCGGAACCTCCCACC+GGG - chr4_1:81266534-81266553 Msa0577090:CDS 70.0%
GCGAGCGCATACGCTGCAGC+AGG + chr4_1:81267861-81267880 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 81266127 81271927 81266127 ID=Msa0577090;Name=Msa0577090
chr4_1 mRNA 81266127 81271927 81266127 ID=Msa0577090-mRNA-1;Parent=Msa0577090;Name=Msa0577090-mRNA-1;_AED=0.09;_eAED=0.09;_QI=49|1|1|1|0.9|0.81|11|352|335
chr4_1 exon 81266127 81266184 81266127 ID=Msa0577090-mRNA-1:exon:29247;Parent=Msa0577090-mRNA-1
chr4_1 exon 81266207 81266557 81266207 ID=Msa0577090-mRNA-1:exon:29246;Parent=Msa0577090-mRNA-1
chr4_1 exon 81266806 81266871 81266806 ID=Msa0577090-mRNA-1:exon:29245;Parent=Msa0577090-mRNA-1
chr4_1 exon 81267221 81267253 81267221 ID=Msa0577090-mRNA-1:exon:29244;Parent=Msa0577090-mRNA-1
chr4_1 exon 81268153 81268212 81268153 ID=Msa0577090-mRNA-1:exon:29243;Parent=Msa0577090-mRNA-1
chr4_1 exon 81268931 81268992 81268931 ID=Msa0577090-mRNA-1:exon:29242;Parent=Msa0577090-mRNA-1
chr4_1 exon 81269991 81270055 81269991 ID=Msa0577090-mRNA-1:exon:29241;Parent=Msa0577090-mRNA-1
chr4_1 exon 81270144 81270226 81270144 ID=Msa0577090-mRNA-1:exon:29240;Parent=Msa0577090-mRNA-1
chr4_1 exon 81271113 81271155 81271113 ID=Msa0577090-mRNA-1:exon:29239;Parent=Msa0577090-mRNA-1
chr4_1 exon 81271255 81271352 81271255 ID=Msa0577090-mRNA-1:exon:29238;Parent=Msa0577090-mRNA-1
chr4_1 exon 81271438 81271927 81271438 ID=Msa0577090-mRNA-1:exon:29237;Parent=Msa0577090-mRNA-1
chr4_1 five_prime_UTR 81271879 81271927 81271879 ID=Msa0577090-mRNA-1:five_prime_utr;Parent=Msa0577090-mRNA-1
chr4_1 CDS 81271438 81271878 81271438 ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1
chr4_1 CDS 81271255 81271352 81271255 ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1
chr4_1 CDS 81271113 81271155 81271113 ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1
chr4_1 CDS 81270144 81270226 81270144 ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1
chr4_1 CDS 81269991 81270055 81269991 ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1
chr4_1 CDS 81268931 81268992 81268931 ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1
chr4_1 CDS 81268153 81268212 81268153 ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1
chr4_1 CDS 81267221 81267253 81267221 ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1
chr4_1 CDS 81266806 81266871 81266806 ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1
chr4_1 CDS 81266501 81266557 81266501 ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1
chr4_1 three_prime_UTR 81266207 81266500 81266207 ID=Msa0577090-mRNA-1:three_prime_utr;Parent=Msa0577090-mRNA-1
chr4_1 three_prime_UTR 81266127 81266184 81266127 ID=Msa0577090-mRNA-1:three_prime_utr;Parent=Msa0577090-mRNA-1
Gene Sequence

>Msa0577090

ATGGCGCTACGTTGCTCCTCAGCAGCAGCAGTTGCAATTTTCAAATCTTGTGTCTCTCTAAAATCACACATATTTCCAATTTCAGTTTCATTTCAAAACCTTAATTCTCATTCCAATTCTTCTACAATTTTCTGTACTGCAACCAAATCACAGAAAAATTCTCCTCCTTCTTCTTCTTCTTCCTCCAAAAAGAAGACGAAGAAAAGGAAGAATTCTTCAGTTGAAACTGAGGATTGGAAAAATTTGAATTCCAATACTGATTTTGAATTATTGCGTGATTTTTCTGCGGATAATGATGTTCAAAATGTTGTTACTGGTGTTGCTTCTGGTTCCTCTTTATTTTATCCTGATGATATGCCGTTGCCGGAACCTCCCACCGGGTTTGCCATTGACGAAAACGGTGAAATTCTGCTTACTTCAACAAATCGGCTTATCACCATAGTTGATCCTATGAATAACCTTCCGTTGGAGTGTGTGGTTCGGAGAATGTTCAAGAGTTCTGATAGAGATGAATGTATGTTGCTTTGCCCGGTTGACACGCCTGTGCAAATATTGAAGAGCACACCTGATGGATGGTCAGCTATCAGCGAGGAGGAAGTTGAATCTATTCTGCCTGCTGCAGCGTATGCGCTCGCCAAGATACACATGCATCTTGTTTACAGCGGGTACTGTTACACAGCACGTGGCGGTTTTTGCTACACAGAACAAGATATACTTGACTTCCACACAGATGATGGTAATGAAGTGGATGGCTTGCCAAGTGATGGTGTAGAAATTACATATTTTGATCTGGAAGATACTCGCTACATGATTTATACACCATCTGAACCACTTCAGTTTGTTGTTGTGAAGGGTGAGAATGGGATGTTTCAAATGGCTGATGATGACTTGCTGGATGATCCTGCTGTCATTGACGCCATAGACGAGGAGACTGAATTTAATGCCTTGGTGGAAGAAGAAGCTGCACTTATTGAAGCAATGATGGATGAAAGCAATGATGATGAATGA

Protein sequence

>Msa0577090

MALRCSSAAAVAIFKSCVSLKSHIFPISVSFQNLNSHSNSSTIFCTATKSQKNSPPSSSSSSKKKTKKRKNSSVETEDWKNLNSNTDFELLRDFSADNDVQNVVTGVASGSSLFYPDDMPLPEPPTGFAIDENGEILLTSTNRLITIVDPMNNLPLECVVRRMFKSSDRDECMLLCPVDTPVQILKSTPDGWSAISEEEVESILPAAAYALAKIHMHLVYSGYCYTARGGFCYTEQDILDFHTDDGNEVDGLPSDGVEITYFDLEDTRYMIYTPSEPLQFVVVKGENGMFQMADDDLLDDPAVIDAIDEETEFNALVEEEAALIEAMMDESNDDE*