Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0577090 | XP_003630314.1 | 92.857 | 336 | 19 | 2 | 1 | 335 | 1 | 332 | 0.0 | 583 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0577090 | G7LEY0 | 92.857 | 336 | 19 | 2 | 1 | 335 | 1 | 332 | 0.0 | 583 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002060 | Msa0577090 | 0.814189 | 1.749039e-51 | -8.615850e-47 |
Msa0034320 | Msa0577090 | 0.811439 | 6.996914e-51 | -8.615850e-47 |
Msa0037300 | Msa0577090 | 0.805422 | 1.345355e-49 | -8.615850e-47 |
Msa0046050 | Msa0577090 | 0.806631 | 7.491273e-50 | -8.615850e-47 |
Msa0075830 | Msa0577090 | 0.837601 | 4.722215e-57 | -8.615850e-47 |
Msa0077910 | Msa0577090 | 0.812598 | 3.911781e-51 | -8.615850e-47 |
Msa0089510 | Msa0577090 | 0.854766 | 9.891138e-62 | -8.615850e-47 |
Msa0089520 | Msa0577090 | 0.856026 | 4.247766e-62 | -8.615850e-47 |
Msa0096830 | Msa0577090 | 0.813122 | 3.003248e-51 | -8.615850e-47 |
Msa0112340 | Msa0577090 | 0.814413 | 1.560576e-51 | -8.615850e-47 |
Msa0116950 | Msa0577090 | 0.811515 | 6.737369e-51 | -8.615850e-47 |
Msa0125800 | Msa0577090 | 0.817983 | 2.484185e-52 | -8.615850e-47 |
Msa0149070 | Msa0577090 | 0.803266 | 3.783368e-49 | -8.615850e-47 |
Msa0170440 | Msa0577090 | 0.814025 | 1.900876e-51 | -8.615850e-47 |
Msa0173610 | Msa0577090 | 0.811813 | 5.801948e-51 | -8.615850e-47 |
Msa0178020 | Msa0577090 | 0.802941 | 4.418267e-49 | -8.615850e-47 |
Msa0178940 | Msa0577090 | 0.823942 | 1.055388e-53 | -8.615850e-47 |
Msa0181010 | Msa0577090 | 0.810418 | 1.164402e-50 | -8.615850e-47 |
Msa0182610 | Msa0577090 | 0.811711 | 6.106235e-51 | -8.615850e-47 |
Msa0193000 | Msa0577090 | 0.816126 | 6.495158e-52 | -8.615850e-47 |
Msa0233200 | Msa0577090 | 0.821600 | 3.703361e-53 | -8.615850e-47 |
Msa0380520 | Msa0577090 | 0.807173 | 5.752847e-50 | -8.615850e-47 |
Msa0382500 | Msa0577090 | 0.806886 | 6.615157e-50 | -8.615850e-47 |
Msa0421800 | Msa0577090 | 0.818104 | 2.332663e-52 | -8.615850e-47 |
Msa0425810 | Msa0577090 | 0.801984 | 6.955264e-49 | -8.615850e-47 |
Msa0427590 | Msa0577090 | 0.817110 | 3.908130e-52 | -8.615850e-47 |
Msa0437790 | Msa0577090 | 0.809795 | 1.585888e-50 | -8.615850e-47 |
Msa0467080 | Msa0577090 | 0.800668 | 1.293714e-48 | -8.615850e-47 |
Msa0472270 | Msa0577090 | 0.815022 | 1.143551e-51 | -8.615850e-47 |
Msa0280120 | Msa0577090 | 0.835509 | 1.610403e-56 | -8.615850e-47 |
Msa0280140 | Msa0577090 | 0.807609 | 4.649100e-50 | -8.615850e-47 |
Msa0296000 | Msa0577090 | 0.815363 | 9.605079e-52 | -8.615850e-47 |
Msa0311910 | Msa0577090 | 0.818934 | 1.512830e-52 | -8.615850e-47 |
Msa0322480 | Msa0577090 | 0.815106 | 1.095738e-51 | -8.615850e-47 |
Msa0342620 | Msa0577090 | 0.811643 | 6.318507e-51 | -8.615850e-47 |
Msa0482960 | Msa0577090 | 0.837516 | 4.963445e-57 | -8.615850e-47 |
Msa0514260 | Msa0577090 | 0.822362 | 2.466518e-53 | -8.615850e-47 |
Msa0518160 | Msa0577090 | 0.803774 | 2.969510e-49 | -8.615850e-47 |
Msa0524960 | Msa0577090 | 0.802541 | 5.342243e-49 | -8.615850e-47 |
Msa0552670 | Msa0577090 | 0.833831 | 4.253772e-56 | -8.615850e-47 |
Msa0560200 | Msa0577090 | 0.807289 | 5.436338e-50 | -8.615850e-47 |
Msa0577090 | Msa0619350 | 0.969437 | 4.031955e-130 | -8.615850e-47 |
Msa0577090 | Msa0624220 | 0.803903 | 2.791400e-49 | -8.615850e-47 |
Msa0577090 | Msa0644220 | 0.802225 | 6.206419e-49 | -8.615850e-47 |
Msa0577090 | Msa0645040 | 0.805099 | 1.571941e-49 | -8.615850e-47 |
Msa0577090 | Msa0659480 | 0.845785 | 3.270996e-59 | -8.615850e-47 |
Msa0577090 | Msa0691100 | 0.842257 | 2.888154e-58 | -8.615850e-47 |
Msa0577090 | Msa0702120 | 0.808146 | 3.575105e-50 | -8.615850e-47 |
Msa0577090 | Msa0705250 | 0.825067 | 5.736392e-54 | -8.615850e-47 |
Msa0577090 | Msa0707290 | 0.804866 | 1.758554e-49 | -8.615850e-47 |
Msa0577090 | Msa0713550 | 0.814830 | 1.261646e-51 | -8.615850e-47 |
Msa0577090 | Msa0790180 | 0.800330 | 1.515998e-48 | -8.615850e-47 |
Msa0577090 | Msa0793100 | 0.800623 | 1.321325e-48 | -8.615850e-47 |
Msa0577090 | Msa0827770 | -0.802374 | 5.784194e-49 | -8.615850e-47 |
Msa0577090 | Msa0966410 | 0.849393 | 3.328253e-60 | -8.615850e-47 |
Msa0577090 | Msa0970090 | 0.809692 | 1.668569e-50 | -8.615850e-47 |
Msa0577090 | Msa1001780 | 0.817153 | 3.821897e-52 | -8.615850e-47 |
Msa0577090 | Msa1002980 | 0.812284 | 4.580320e-51 | -8.615850e-47 |
Msa0577090 | Msa1013510 | 0.806728 | 7.146222e-50 | -8.615850e-47 |
Msa0577090 | Msa1021600 | 0.800060 | 1.720509e-48 | -8.615850e-47 |
Msa0577090 | Msa1040390 | 0.808899 | 2.468859e-50 | -8.615850e-47 |
Msa0577090 | Msa1083140 | 0.809351 | 1.975306e-50 | -8.615850e-47 |
Msa0577090 | Msa1118460 | 0.806414 | 8.322605e-50 | -8.615850e-47 |
Msa0577090 | Msa1126310 | 0.802077 | 6.656285e-49 | -8.615850e-47 |
Msa0577090 | Msa1127900 | 0.823401 | 1.412604e-53 | -8.615850e-47 |
Msa0577090 | Msa1130660 | 0.838283 | 3.152473e-57 | -8.615850e-47 |
Msa0577090 | Msa1132820 | 0.806599 | 7.606803e-50 | -8.615850e-47 |
Msa0577090 | Msa1165810 | 0.832504 | 9.105782e-56 | -8.615850e-47 |
Msa0577090 | Msa1208630 | 0.820610 | 6.262505e-53 | -8.615850e-47 |
Msa0577090 | Msa1208750 | 0.811357 | 7.289243e-51 | -8.615850e-47 |
Msa0577090 | Msa1258940 | 0.835339 | 1.777905e-56 | -8.615850e-47 |
Msa0577090 | Msa1263590 | 0.826261 | 2.988580e-54 | -8.615850e-47 |
Msa0577090 | Msa1263670 | 0.820782 | 5.717854e-53 | -8.615850e-47 |
Msa0577090 | Msa1288730 | 0.807144 | 5.834859e-50 | -8.615850e-47 |
Msa0577090 | Msa1325650 | 0.821573 | 3.758364e-53 | -8.615850e-47 |
Msa0577090 | Msa1373390 | 0.812677 | 3.759559e-51 | -8.615850e-47 |
Msa0577090 | Msa1375120 | 0.807175 | 5.746765e-50 | -8.615850e-47 |
Msa0577090 | Msa1380720 | 0.826245 | 3.015076e-54 | -8.615850e-47 |
Msa0577090 | Msa1391430 | 0.833494 | 5.163785e-56 | -8.615850e-47 |
Msa0577090 | Msa1398740 | 0.812645 | 3.820888e-51 | -8.615850e-47 |
Msa0577090 | Msa1406230 | 0.801314 | 9.546681e-49 | -8.615850e-47 |
Msa0577090 | Msa1406880 | 0.806455 | 8.156934e-50 | -8.615850e-47 |
Msa0577090 | Msa1411390 | 0.802109 | 6.555711e-49 | -8.615850e-47 |
Msa0577090 | Msa1411830 | 0.844686 | 6.481755e-59 | -8.615850e-47 |
Msa0577090 | Msa1416460 | 0.818691 | 1.717468e-52 | -8.615850e-47 |
Msa0577090 | Msa1422490 | 0.803946 | 2.734571e-49 | -8.615850e-47 |
Msa0577090 | Msa1423190 | 0.806702 | 7.234255e-50 | -8.615850e-47 |
Msa0577090 | Msa1423230 | 0.943068 | 2.341881e-102 | -8.615850e-47 |
Msa0577090 | Msa1423550 | 0.824610 | 7.352366e-54 | -8.615850e-47 |
Msa0577090 | Msa1439880 | 0.802509 | 5.425170e-49 | -8.615850e-47 |
Msa0577090 | Msa1449600 | 0.824332 | 8.547483e-54 | -8.615850e-47 |
Msa0577090 | Msa1449680 | 0.814972 | 1.173367e-51 | -8.615850e-47 |
Msa0577090 | Msa1456830 | 0.810835 | 9.461727e-51 | -8.615850e-47 |
Msa0577090 | Msa1458330 | 0.814566 | 1.443097e-51 | -8.615850e-47 |
Msa0577090 | Msa1460650 | 0.804014 | 2.646940e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0577090 | MtrunA17_Chr8g0384691 | 92.857 | 336 | 19 | 2 | 1 | 335 | 1 | 332 | 0.0 | 583 |
Msa0577090 | MtrunA17_Chr3g0130681 | 65.385 | 208 | 70 | 1 | 121 | 328 | 101 | 306 | 1.03e-103 | 306 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0577090 | AT4G33480.1 | 68.720 | 211 | 65 | 1 | 121 | 330 | 124 | 334 | 8.55e-102 | 303 |
Find 73 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTAAGGACCTGTAAAATTAT+AGG | 0.218189 | 4_1:-81266300 | Msa0577090:three_prime_UTR |
GTTGTTACTGGTGTTGCTTC+TGG | 0.256857 | 4_1:-81271550 | Msa0577090:CDS |
TGTTAGTAATTGTTGTAATC+TGG | 0.263737 | 4_1:-81266365 | Msa0577090:three_prime_UTR |
AAGAATTGGAATGAGAATTA+AGG | 0.278335 | 4_1:+81271758 | None:intergenic |
AGTTAGTATTTGTTGTTATC+TGG | 0.290200 | 4_1:-81266414 | Msa0577090:three_prime_UTR |
TAAGGACCTGTAAAATTATA+GGG | 0.308395 | 4_1:-81266299 | Msa0577090:three_prime_UTR |
ACAGAAAATTGTAGAAGAAT+TGG | 0.315728 | 4_1:+81271744 | None:intergenic |
GCAAACCCGGTGGGAGGTTC+CGG | 0.321014 | 4_1:+81271493 | None:intergenic |
TCCTGATGATATGCCGTTGC+CGG | 0.337706 | 4_1:-81271512 | Msa0577090:CDS |
GATGTTCAAAATGTTGTTAC+TGG | 0.344264 | 4_1:-81271562 | Msa0577090:CDS |
AAATTCAGTCTCCTCGTCTA+TGG | 0.365085 | 4_1:+81266818 | None:intergenic |
TTAATTACTTACGTGTCAAC+CGG | 0.369775 | 4_1:+81271243 | None:intergenic |
GCTCAGGTCAATGAGCAAAT+TGG | 0.397251 | 4_1:+81266242 | None:intergenic |
AAATAGATTGACTGTGCTCT+TGG | 0.399674 | 4_1:-81266276 | Msa0577090:three_prime_UTR |
CATTTGTGAACAGGACTTGC+TGG | 0.414686 | 4_1:-81266862 | Msa0577090:intron |
TTCTGCTTACTTCAACAAAT+CGG | 0.416331 | 4_1:-81271450 | Msa0577090:CDS |
CAATAATTCAAAATCAGTAT+TGG | 0.434374 | 4_1:+81271606 | None:intergenic |
TTCCGTTGGAGTGTGTGGTT+CGG | 0.440368 | 4_1:-81271311 | Msa0577090:CDS |
TTATTTGTGCAGGGTGAGAA+TGG | 0.443645 | 4_1:-81267243 | Msa0577090:intron |
TTGGAGGAAGAAGAAGAAGA+AGG | 0.448446 | 4_1:+81271691 | None:intergenic |
CTTCAGTTGAAACTGAGGAT+TGG | 0.448739 | 4_1:-81271642 | Msa0577090:CDS |
TCCGGCAACGGCATATCATC+AGG | 0.470462 | 4_1:+81271511 | None:intergenic |
GGAGACTGAATTTAATGCCT+TGG | 0.472300 | 4_1:-81266808 | Msa0577090:CDS |
TCCAACGGAAGGTTATTCAT+AGG | 0.482809 | 4_1:+81271324 | None:intergenic |
GGGTTTGCCATTGACGAAAA+CGG | 0.491547 | 4_1:-81271478 | Msa0577090:CDS |
CCGTTGCCGGAACCTCCCAC+CGG | 0.491708 | 4_1:-81271499 | Msa0577090:CDS |
CGGTAAAATCAACCGTGCTC+AGG | 0.495598 | 4_1:+81266226 | None:intergenic |
AACAAGATGCATGTGTATCT+TGG | 0.502259 | 4_1:+81270152 | None:intergenic |
GACTGAATTTAATGCCTTGG+TGG | 0.506705 | 4_1:-81266805 | Msa0577090:intron |
TGAATGTATGTTGCTTTGCC+CGG | 0.514398 | 4_1:-81271262 | Msa0577090:CDS |
GCGAGCGCATACGCTGCAGC+AGG | 0.519080 | 4_1:+81270174 | None:intergenic |
TCCTATGAATAACCTTCCGT+TGG | 0.519345 | 4_1:-81271325 | Msa0577090:CDS |
GTGCTCTTCAATATTTGCAC+AGG | 0.520741 | 4_1:+81271132 | None:intergenic |
AAAATTGATCATATACATAG+AGG | 0.521725 | 4_1:+81266323 | None:intergenic |
AAATTGATCATATACATAGA+GGG | 0.530400 | 4_1:+81266324 | None:intergenic |
ACTTCAGTTTGTTGTTGTGA+AGG | 0.541807 | 4_1:-81268152 | Msa0577090:intron |
ACATGCATCTTGTTTACAGC+GGG | 0.542894 | 4_1:-81270143 | Msa0577090:intron |
CCGGTGGGAGGTTCCGGCAA+CGG | 0.543817 | 4_1:+81271499 | None:intergenic |
TGCACTTATTGAAGCAATGA+TGG | 0.547958 | 4_1:-81266524 | Msa0577090:CDS |
AATTGCAACTGCTGCTGCTG+AGG | 0.548569 | 4_1:+81271840 | None:intergenic |
CGTTGCCGGAACCTCCCACC+GGG | 0.548585 | 4_1:-81271498 | Msa0577090:CDS |
ATCATCAGGATAAAATAAAG+AGG | 0.555773 | 4_1:+81271525 | None:intergenic |
TATTTGTGCAGGGTGAGAAT+GGG | 0.556129 | 4_1:-81267242 | Msa0577090:intron |
CTTACAGCTGACCATCCATC+AGG | 0.563519 | 4_1:+81271108 | None:intergenic |
TAATTACTTACGTGTCAACC+GGG | 0.577475 | 4_1:+81271244 | None:intergenic |
TCTATGGCGTCAATGACAGC+AGG | 0.580809 | 4_1:+81266834 | None:intergenic |
TAACCTTCCGTTGGAGTGTG+TGG | 0.581027 | 4_1:-81271316 | Msa0577090:CDS |
TTCACAACAACAAACTGAAG+TGG | 0.585546 | 4_1:+81268154 | None:intergenic |
TTCGTCAATGGCAAACCCGG+TGG | 0.591270 | 4_1:+81271483 | None:intergenic |
AAAACAAAGATAGATGAGAT+CGG | 0.591300 | 4_1:+81266206 | None:intergenic |
ATATTGAAGAGCACACCTGA+TGG | 0.594346 | 4_1:-81271123 | Msa0577090:CDS |
TGCAGATGATGGTAATGAAG+TGG | 0.597707 | 4_1:-81268975 | Msa0577090:intron |
TGAAGAGCACACCTGATGGA+TGG | 0.603729 | 4_1:-81271119 | Msa0577090:CDS |
TGAGAATGGGATGTTTCAAA+TGG | 0.603878 | 4_1:-81267229 | Msa0577090:CDS |
TTTGCTCATTGACCTGAGCA+CGG | 0.605141 | 4_1:-81266238 | Msa0577090:three_prime_UTR |
GTAATTTCTACACCATCACT+TGG | 0.605477 | 4_1:+81268944 | None:intergenic |
GTGGATGGCTTGCCAAGTGA+TGG | 0.606609 | 4_1:-81268956 | Msa0577090:CDS |
GATTACAACAATTACTAACA+AGG | 0.607104 | 4_1:+81266368 | None:intergenic |
ACAAACTGAAGTGGTTCAGA+TGG | 0.608941 | 4_1:+81268163 | None:intergenic |
CTCCGAACCACACACTCCAA+CGG | 0.614714 | 4_1:+81271309 | None:intergenic |
GAATTCTTCAGTTGAAACTG+AGG | 0.615714 | 4_1:-81271647 | Msa0577090:CDS |
TCGTCAATGGCAAACCCGGT+GGG | 0.620091 | 4_1:+81271484 | None:intergenic |
ATTACAACAATTACTAACAA+GGG | 0.630057 | 4_1:+81266369 | None:intergenic |
GAACCACACACTCCAACGGA+AGG | 0.636707 | 4_1:+81271313 | None:intergenic |
CACATGCATCTTGTTTACAG+CGG | 0.646015 | 4_1:-81270144 | Msa0577090:CDS |
TCAATGGCAAACCCGGTGGG+AGG | 0.656601 | 4_1:+81271487 | None:intergenic |
TGTCATTGACGCCATAGACG+AGG | 0.663191 | 4_1:-81266829 | Msa0577090:CDS |
TACTGTTACACAGCACGTGG+CGG | 0.668638 | 4_1:-81270032 | Msa0577090:CDS |
AATTGATCATATACATAGAG+GGG | 0.671889 | 4_1:+81266325 | None:intergenic |
GATATACTTGACTTCCACAC+AGG | 0.674786 | 4_1:-81269990 | Msa0577090:intron |
GATGATGGTAATGAAGTGGA+TGG | 0.699911 | 4_1:-81268971 | Msa0577090:CDS |
AGGTACTGTTACACAGCACG+TGG | 0.735751 | 4_1:-81270035 | Msa0577090:CDS |
AATGAAGTCACATACCACCA+AGG | 0.747149 | 4_1:+81266791 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAAAAAAAAGGAA+AGG | + | chr4_1:81267754-81267773 | None:intergenic | 10.0% |
!! | GTAGAAAAAAAAAAAAAAAA+AGG | + | chr4_1:81267759-81267778 | None:intergenic | 10.0% |
!!! | ATTTTAAATAAGTTGTTAAC+AGG | - | chr4_1:81266680-81266699 | Msa0577090:intron | 15.0% |
!!! | TTTATTATTATTGATGACTA+TGG | - | chr4_1:81266854-81266873 | Msa0577090:intron | 15.0% |
!! | AAAATTAAATAACACGATTT+AGG | + | chr4_1:81267203-81267222 | None:intergenic | 15.0% |
!!! | TTATTTTAGTTTTTGTGATA+TGG | - | chr4_1:81267611-81267630 | Msa0577090:intron | 15.0% |
!! | AATTAAAATCTATGTTTGTA+TGG | - | chr4_1:81267649-81267668 | Msa0577090:intron | 15.0% |
!! | AAAATGAAAAGTTAATCTTT+AGG | - | chr4_1:81268903-81268922 | Msa0577090:intron | 15.0% |
!!! | GGTAATTTTATTAACTTAAT+TGG | - | chr4_1:81269123-81269142 | Msa0577090:intron | 15.0% |
!!! | GCTTCTAAATTTAAAATTAA+TGG | + | chr4_1:81269565-81269584 | None:intergenic | 15.0% |
!! | ATGAAAATATGTTAATAAGT+CGG | - | chr4_1:81270172-81270191 | Msa0577090:CDS | 15.0% |
!!! | TCTTATAATCCAATTTTATA+AGG | - | chr4_1:81270206-81270225 | Msa0577090:CDS | 15.0% |
!! | AGATATTATGATAATTAACT+TGG | - | chr4_1:81270763-81270782 | Msa0577090:intron | 15.0% |
!!! | TTTTGTAGTTAATTAATGAT+TGG | + | chr4_1:81270853-81270872 | None:intergenic | 15.0% |
!! | ATTAGATTACAGAGAAAAAA+GGG | - | chr4_1:81266141-81266160 | Msa0577090:three_prime_UTR | 20.0% |
!!! | TTTTGAAATGAAACTGAAAT+TGG | + | chr4_1:81266254-81266273 | None:intergenic | 20.0% |
!! | CAATAATTCAAAATCAGTAT+TGG | + | chr4_1:81266429-81266448 | None:intergenic | 20.0% |
!!! | ATATGGAATTTTATTAATGC+AGG | - | chr4_1:81266877-81266896 | Msa0577090:intron | 20.0% |
!!! | AAATTGAGATTTAAAATGCA+GGG | + | chr4_1:81266956-81266975 | None:intergenic | 20.0% |
!! | ATTCTTAATGTTATCTTGAA+TGG | - | chr4_1:81267023-81267042 | Msa0577090:intron | 20.0% |
!! | ATGCTTTAATAAGAGTTTAA+TGG | - | chr4_1:81267243-81267262 | Msa0577090:intron | 20.0% |
!!! | TTGTATGAACATTTTGAAAT+TGG | + | chr4_1:81267341-81267360 | None:intergenic | 20.0% |
!! | TCAAAATGTTCATACAAAAA+TGG | - | chr4_1:81267344-81267363 | Msa0577090:intron | 20.0% |
!! | CAAAATGTTCATACAAAAAT+GGG | - | chr4_1:81267345-81267364 | Msa0577090:intron | 20.0% |
!!! | CTGTAGATCATAATTTTTAA+AGG | + | chr4_1:81267427-81267446 | None:intergenic | 20.0% |
!! | ATACAAATACTTCATAGTTT+AGG | + | chr4_1:81267521-81267540 | None:intergenic | 20.0% |
!! | ATAACAAACAACGAAATATT+GGG | + | chr4_1:81267549-81267568 | None:intergenic | 20.0% |
!!! | AATATTTCGTTGTTTGTTAT+GGG | - | chr4_1:81267549-81267568 | Msa0577090:intron | 20.0% |
!! | CTTATTCTTGTGATATTATA+AGG | - | chr4_1:81268398-81268417 | Msa0577090:intron | 20.0% |
!! | GAAGTTGCTAAATTATAATA+CGG | + | chr4_1:81268552-81268571 | None:intergenic | 20.0% |
!! | AGGAAGTTATTATCAATATA+TGG | - | chr4_1:81268923-81268942 | Msa0577090:intron | 20.0% |
!!! | AGAAATTACATATTTTGATC+TGG | - | chr4_1:81269102-81269121 | Msa0577090:intron | 20.0% |
!! | TGAAGTGAAAAATAAAAAAC+GGG | + | chr4_1:81269258-81269277 | None:intergenic | 20.0% |
!! | GTGAAGTGAAAAATAAAAAA+CGG | + | chr4_1:81269259-81269278 | None:intergenic | 20.0% |
!! | ATAAGTTCATTTCAATGAAT+TGG | + | chr4_1:81269302-81269321 | None:intergenic | 20.0% |
!!! | AAATTTAAAATTAATGGACG+AGG | + | chr4_1:81269559-81269578 | None:intergenic | 20.0% |
!!! | AATAGTCTTTTTTTTTTTGC+AGG | - | chr4_1:81269820-81269839 | Msa0577090:intron | 20.0% |
!! | ATTTAACTAATATTCAGAAG+AGG | - | chr4_1:81269993-81270012 | Msa0577090:CDS | 20.0% |
!! | TGAAAATATGTTAATAAGTC+GGG | - | chr4_1:81270173-81270192 | Msa0577090:CDS | 20.0% |
!! | AAGAAAATATATAGGAGAAT+TGG | + | chr4_1:81270511-81270530 | None:intergenic | 20.0% |
!! | ATCTTAAACAAGTCTATAAA+AGG | + | chr4_1:81270615-81270634 | None:intergenic | 20.0% |
!!! | TAGATCTGAATTTTTACAAT+TGG | - | chr4_1:81270729-81270748 | Msa0577090:intron | 20.0% |
!!! | ATTGAATTTGAAACTAAGAA+AGG | + | chr4_1:81270890-81270909 | None:intergenic | 20.0% |
!! | TTTAGTAAATTATGATACGA+TGG | - | chr4_1:81271267-81271286 | Msa0577090:CDS | 20.0% |
!! | CATGGAATAAATAGTTAAAA+AGG | + | chr4_1:81271425-81271444 | None:intergenic | 20.0% |
!! | ATTACAACAATTACTAACAA+GGG | + | chr4_1:81271666-81271685 | None:intergenic | 20.0% |
!! | AAATTGATCATATACATAGA+GGG | + | chr4_1:81271711-81271730 | None:intergenic | 20.0% |
!! | AAAATTGATCATATACATAG+AGG | + | chr4_1:81271712-81271731 | None:intergenic | 20.0% |
!!! | TGTATATGATCAATTTTGTA+AGG | - | chr4_1:81271715-81271734 | Msa0577090:CDS | 20.0% |
!!! | TTTTGATTGTTTTTCAGTTT+TGG | - | chr4_1:81271853-81271872 | Msa0577090:CDS | 20.0% |
! | GATTAGATTACAGAGAAAAA+AGG | - | chr4_1:81266140-81266159 | Msa0577090:three_prime_UTR | 25.0% |
! | TTAGATTACAGAGAAAAAAG+GGG | - | chr4_1:81266142-81266161 | Msa0577090:three_prime_UTR | 25.0% |
! | AAGAATTGGAATGAGAATTA+AGG | + | chr4_1:81266277-81266296 | None:intergenic | 25.0% |
! | ACAGAAAATTGTAGAAGAAT+TGG | + | chr4_1:81266291-81266310 | None:intergenic | 25.0% |
! | ATCATCAGGATAAAATAAAG+AGG | + | chr4_1:81266510-81266529 | None:intergenic | 25.0% |
! | TTGACACGTAAGTAATTAAA+AGG | - | chr4_1:81266793-81266812 | Msa0577090:intron | 25.0% |
!! | ATTAAAAGGTTTTACAACGT+CGG | - | chr4_1:81266807-81266826 | Msa0577090:CDS | 25.0% |
!! | ATTATTGATGACTATGGATA+TGG | - | chr4_1:81266860-81266879 | Msa0577090:intron | 25.0% |
!! | CAAATTGAGATTTAAAATGC+AGG | + | chr4_1:81266957-81266976 | None:intergenic | 25.0% |
! | TCTAATGTGAGTTTACTTTA+AGG | - | chr4_1:81267056-81267075 | Msa0577090:intron | 25.0% |
! | TCTCAATAATTGATGAGAAA+AGG | + | chr4_1:81267165-81267184 | None:intergenic | 25.0% |
! | TTAAATAACACGATTTAGGT+TGG | + | chr4_1:81267199-81267218 | None:intergenic | 25.0% |
! | AAGCATTATTCAAAGAGATT+TGG | + | chr4_1:81267229-81267248 | None:intergenic | 25.0% |
!!! | TATGAACATTTTGAAATTGG+TGG | + | chr4_1:81267338-81267357 | None:intergenic | 25.0% |
!!! | GAAAATTGATGGATTTTCAT+TGG | - | chr4_1:81267375-81267394 | Msa0577090:intron | 25.0% |
! | CATAACAAACAACGAAATAT+TGG | + | chr4_1:81267550-81267569 | None:intergenic | 25.0% |
!! | CAATATTTCGTTGTTTGTTA+TGG | - | chr4_1:81267548-81267567 | Msa0577090:intron | 25.0% |
! | ATAAAAATGAGTGATATGCA+GGG | + | chr4_1:81267595-81267614 | None:intergenic | 25.0% |
! | AATAAAAATGAGTGATATGC+AGG | + | chr4_1:81267596-81267615 | None:intergenic | 25.0% |
! | AAAAAGAATGTCATTGTATG+TGG | + | chr4_1:81267707-81267726 | None:intergenic | 25.0% |
!! | GAAATATGTATTTTCGCATA+AGG | + | chr4_1:81267732-81267751 | None:intergenic | 25.0% |
! | TTAGCAAATACAACTCTAAA+CGG | + | chr4_1:81268242-81268261 | None:intergenic | 25.0% |
!! | CTAAAAACTTGTCAAGTTTT+TGG | - | chr4_1:81268258-81268277 | Msa0577090:intron | 25.0% |
! | ACTACTATAAACTAAAAGAG+AGG | + | chr4_1:81268322-81268341 | None:intergenic | 25.0% |
!! | TTTATAGTAGTGTTTTTCGT+GGG | - | chr4_1:81268331-81268350 | Msa0577090:intron | 25.0% |
! | TGATATTATAAGGAGATGTT+TGG | - | chr4_1:81268408-81268427 | Msa0577090:intron | 25.0% |
! | GATATTATAAGGAGATGTTT+GGG | - | chr4_1:81268409-81268428 | Msa0577090:intron | 25.0% |
! | GAATTTATGTTTACAACTAC+TGG | - | chr4_1:81268484-81268503 | Msa0577090:intron | 25.0% |
! | GAATTTATGTTTACAACTAC+TGG | - | chr4_1:81268484-81268503 | Msa0577090:intron | 25.0% |
! | TATAATTTCATGTGCAAGTT+AGG | - | chr4_1:81268669-81268688 | Msa0577090:intron | 25.0% |
! | TCTAATTATGCAACAATTCA+TGG | + | chr4_1:81268699-81268718 | None:intergenic | 25.0% |
! | CGAGTAACAATGAATATATA+TGG | + | chr4_1:81268768-81268787 | None:intergenic | 25.0% |
! | AATCAAGCATGAAAAAACTT+GGG | + | chr4_1:81268829-81268848 | None:intergenic | 25.0% |
! | CAGTTGGAAAAATGAAAATT+AGG | + | chr4_1:81268852-81268871 | None:intergenic | 25.0% |
! | TTATTATCAATATATGGCCA+GGG | - | chr4_1:81268929-81268948 | Msa0577090:intron | 25.0% |
!!! | TTGATTTTTTTTCTCAATCG+AGG | - | chr4_1:81269167-81269186 | Msa0577090:intron | 25.0% |
!! | TATTTTTCACTTCACTAGTA+TGG | - | chr4_1:81269264-81269283 | Msa0577090:intron | 25.0% |
! | AAAGACTTGATAAAACAGAT+GGG | + | chr4_1:81269399-81269418 | None:intergenic | 25.0% |
! | AAAAGACTTGATAAAACAGA+TGG | + | chr4_1:81269400-81269419 | None:intergenic | 25.0% |
!! | ATCTGTTTTATCAAGTCTTT+TGG | - | chr4_1:81269399-81269418 | Msa0577090:intron | 25.0% |
! | ACAAGAATAATGTATAGATC+AGG | + | chr4_1:81269436-81269455 | None:intergenic | 25.0% |
!! | AGAAAGTACAATCAATACTA+CGG | + | chr4_1:81269475-81269494 | None:intergenic | 25.0% |
! | ACTTCATGATATAAACACTA+TGG | + | chr4_1:81269503-81269522 | None:intergenic | 25.0% |
!!! | ACTTTTTCTTTCTAAATCGA+GGG | - | chr4_1:81269614-81269633 | Msa0577090:intron | 25.0% |
!!! | AACGTTTTCCTTTTAATTTC+TGG | + | chr4_1:81269963-81269982 | None:intergenic | 25.0% |
! | AAAAGGAAAACGTTTGATAT+TGG | - | chr4_1:81269969-81269988 | Msa0577090:intron | 25.0% |
!!! | TCTTATTTTCTATTTCTGCA+AGG | + | chr4_1:81270087-81270106 | None:intergenic | 25.0% |
! | GAAAATATGTTAATAAGTCG+GGG | - | chr4_1:81270174-81270193 | Msa0577090:CDS | 25.0% |
! | AATCAATCGCCTTATAAAAT+TGG | + | chr4_1:81270218-81270237 | None:intergenic | 25.0% |
!!! | TTTTATAAGGCGATTGATTT+AGG | - | chr4_1:81270219-81270238 | Msa0577090:intron | 25.0% |
! | TTTATACGAACACAGAATTT+GGG | + | chr4_1:81270250-81270269 | None:intergenic | 25.0% |
!! | TTTTATACGAACACAGAATT+TGG | + | chr4_1:81270251-81270270 | None:intergenic | 25.0% |
! | TAAACAAGTCTATAAAAGGA+GGG | + | chr4_1:81270611-81270630 | None:intergenic | 25.0% |
! | TTAAACAAGTCTATAAAAGG+AGG | + | chr4_1:81270612-81270631 | None:intergenic | 25.0% |
!! | TTTGAAACTAAGAAAGGAAT+TGG | + | chr4_1:81270884-81270903 | None:intergenic | 25.0% |
! | TCTCGTATGCATTTATAATA+TGG | - | chr4_1:81271052-81271071 | Msa0577090:intron | 25.0% |
!! | TACAGCTAAAAAAGTATATC+GGG | + | chr4_1:81271564-81271583 | None:intergenic | 25.0% |
!! | CTACAGCTAAAAAAGTATAT+CGG | + | chr4_1:81271565-81271584 | None:intergenic | 25.0% |
!!! | AGTTAGTATTTGTTGTTATC+TGG | - | chr4_1:81271618-81271637 | Msa0577090:CDS | 25.0% |
! | GATTACAACAATTACTAACA+AGG | + | chr4_1:81271667-81271686 | None:intergenic | 25.0% |
! | TGTTAGTAATTGTTGTAATC+TGG | - | chr4_1:81271667-81271686 | Msa0577090:CDS | 25.0% |
! | AATTGATCATATACATAGAG+GGG | + | chr4_1:81271710-81271729 | None:intergenic | 25.0% |
! | TAAGGACCTGTAAAATTATA+GGG | - | chr4_1:81271733-81271752 | Msa0577090:CDS | 25.0% |
!! | CTATTTCCCTATAATTTTAC+AGG | + | chr4_1:81271742-81271761 | None:intergenic | 25.0% |
! | AAAACAAAGATAGATGAGAT+CGG | + | chr4_1:81271829-81271848 | None:intergenic | 25.0% |
!! | AGTTTTACATGTCATTGTTT+AGG | - | chr4_1:81271898-81271917 | Msa0577090:five_prime_UTR | 25.0% |
! | AGGAGAATTTTTCTGTGATT+TGG | + | chr4_1:81266321-81266340 | None:intergenic | 30.0% |
! | ATTATTGCGTGATTTTTCTG+CGG | - | chr4_1:81266442-81266461 | Msa0577090:three_prime_UTR | 30.0% |
GATGTTCAAAATGTTGTTAC+TGG | - | chr4_1:81266470-81266489 | Msa0577090:three_prime_UTR | 30.0% | |
TTCTGCTTACTTCAACAAAT+CGG | - | chr4_1:81266582-81266601 | Msa0577090:intron | 30.0% | |
TTAATTACTTACGTGTCAAC+CGG | + | chr4_1:81266792-81266811 | None:intergenic | 30.0% | |
GTTGCATCTAATCTTCATTT+AGG | - | chr4_1:81266993-81267012 | Msa0577090:intron | 30.0% | |
GTAAAACTATTTCACAGTGA+CGG | + | chr4_1:81267276-81267295 | None:intergenic | 30.0% | |
AAAATATCTCTGTCCATATC+AGG | - | chr4_1:81267977-81267996 | Msa0577090:intron | 30.0% | |
TAAAAAAATACTTGCCTGTG+TGG | + | chr4_1:81268059-81268078 | None:intergenic | 30.0% | |
ACATTAGTACTTCAGAGAAT+GGG | + | chr4_1:81268086-81268105 | None:intergenic | 30.0% | |
TTAGAGTGTAAACAAAGCAA+AGG | - | chr4_1:81268121-81268140 | Msa0577090:intron | 30.0% | |
TAGAGTGTAAACAAAGCAAA+GGG | - | chr4_1:81268122-81268141 | Msa0577090:intron | 30.0% | |
! | GTTTATAGTAGTGTTTTTCG+TGG | - | chr4_1:81268330-81268349 | Msa0577090:intron | 30.0% |
TTCATTCTCCTTAGTAAGAA+GGG | + | chr4_1:81268366-81268385 | None:intergenic | 30.0% | |
ATTCATTCTCCTTAGTAAGA+AGG | + | chr4_1:81268367-81268386 | None:intergenic | 30.0% | |
TATCACAAGAATAAGTGACT+TGG | + | chr4_1:81268393-81268412 | None:intergenic | 30.0% | |
CAACTACTGGACTTAAAATT+TGG | - | chr4_1:81268497-81268516 | Msa0577090:intron | 30.0% | |
ATCAAGCATGAAAAAACTTG+GGG | + | chr4_1:81268828-81268847 | None:intergenic | 30.0% | |
GAATCAAGCATGAAAAAACT+TGG | + | chr4_1:81268830-81268849 | None:intergenic | 30.0% | |
GTTATTATCAATATATGGCC+AGG | - | chr4_1:81268928-81268947 | Msa0577090:intron | 30.0% | |
! | TAATACCATTTTGCAGATGA+TGG | - | chr4_1:81269046-81269065 | Msa0577090:intron | 30.0% |
TAAGTGTTTCCAAGTTAGTA+AGG | - | chr4_1:81269198-81269217 | Msa0577090:intron | 30.0% | |
! | GCTTTGTATAGATGCATTTT+TGG | - | chr4_1:81269525-81269544 | Msa0577090:intron | 30.0% |
! | TAAATTTAGAAGCGTGACAA+AGG | - | chr4_1:81269572-81269591 | Msa0577090:intron | 30.0% |
!! | GACTTTTTCTTTCTAAATCG+AGG | - | chr4_1:81269613-81269632 | Msa0577090:intron | 30.0% |
GATAGTTGTAAAGTGACTAT+TGG | + | chr4_1:81269670-81269689 | None:intergenic | 30.0% | |
CTTAACATTATTCCCATAGT+GGG | + | chr4_1:81270128-81270147 | None:intergenic | 30.0% | |
TCTTAACATTATTCCCATAG+TGG | + | chr4_1:81270129-81270148 | None:intergenic | 30.0% | |
!! | TAGGTTTTGTAGTGGAATTT+GGG | + | chr4_1:81270470-81270489 | None:intergenic | 30.0% |
AGACGGAGAAGAAAATATAT+AGG | + | chr4_1:81270519-81270538 | None:intergenic | 30.0% | |
GGAAAAAGGAAAGAAATAGA+GGG | + | chr4_1:81270588-81270607 | None:intergenic | 30.0% | |
AAACAAGTCTATAAAAGGAG+GGG | + | chr4_1:81270610-81270629 | None:intergenic | 30.0% | |
AGTAAAAGGGGAGAAAAAAT+AGG | + | chr4_1:81270937-81270956 | None:intergenic | 30.0% | |
TCTCAGAAAAAGGAGTAAAA+GGG | + | chr4_1:81270950-81270969 | None:intergenic | 30.0% | |
ATCTCAGAAAAAGGAGTAAA+AGG | + | chr4_1:81270951-81270970 | None:intergenic | 30.0% | |
ATATTAAGGCAACCAAAATC+TGG | + | chr4_1:81270999-81271018 | None:intergenic | 30.0% | |
! | TTGGTTGCCTTAATATTTTC+CGG | - | chr4_1:81271003-81271022 | Msa0577090:intron | 30.0% |
TCGTCAAACTTAATGTAACA+TGG | + | chr4_1:81271443-81271462 | None:intergenic | 30.0% | |
GTAAGGACCTGTAAAATTAT+AGG | - | chr4_1:81271732-81271751 | Msa0577090:CDS | 30.0% | |
ACAGAGAAAAAAGGGGAAAA+AGG | - | chr4_1:81266149-81266168 | Msa0577090:three_prime_UTR | 35.0% | |
CAGAGAAAAAAGGGGAAAAA+GGG | - | chr4_1:81266150-81266169 | Msa0577090:three_prime_UTR | 35.0% | |
! | TTTCTTCGTCTTCTTTTTGG+AGG | + | chr4_1:81266360-81266379 | None:intergenic | 35.0% |
! | CCTTTTCTTCGTCTTCTTTT+TGG | + | chr4_1:81266363-81266382 | None:intergenic | 35.0% |
CCAAAAAGAAGACGAAGAAA+AGG | - | chr4_1:81266360-81266379 | Msa0577090:three_prime_UTR | 35.0% | |
GAATTCTTCAGTTGAAACTG+AGG | - | chr4_1:81266385-81266404 | Msa0577090:three_prime_UTR | 35.0% | |
! | AATTTCACCGTTTTCGTCAA+TGG | + | chr4_1:81266564-81266583 | None:intergenic | 35.0% |
TAATTACTTACGTGTCAACC+GGG | + | chr4_1:81266791-81266810 | None:intergenic | 35.0% | |
TAAAGAAGCTCATTTGTCGA+TGG | - | chr4_1:81267083-81267102 | Msa0577090:intron | 35.0% | |
AAAGAAGCTCATTTGTCGAT+GGG | - | chr4_1:81267084-81267103 | Msa0577090:intron | 35.0% | |
! | TTGAAATTGGTGGTATGACA+TGG | + | chr4_1:81267328-81267347 | None:intergenic | 35.0% |
!! | GATGGATTTTCATTGGATGT+CGG | - | chr4_1:81267382-81267401 | Msa0577090:intron | 35.0% |
!! | TTTCGTTGTTTGTTATGGGA+TGG | - | chr4_1:81267553-81267572 | Msa0577090:intron | 35.0% |
TTGTGATATGGACAGATAAC+AGG | - | chr4_1:81267623-81267642 | Msa0577090:intron | 35.0% | |
CAGAAGGAAGACATGAATTT+GGG | + | chr4_1:81267800-81267819 | None:intergenic | 35.0% | |
ACAGAAGGAAGACATGAATT+TGG | + | chr4_1:81267801-81267820 | None:intergenic | 35.0% | |
AACAAGATGCATGTGTATCT+TGG | + | chr4_1:81267883-81267902 | None:intergenic | 35.0% | |
GACATTAGTACTTCAGAGAA+TGG | + | chr4_1:81268087-81268106 | None:intergenic | 35.0% | |
AGCAAAGGGTTTATTCAGTT+TGG | - | chr4_1:81268136-81268155 | Msa0577090:intron | 35.0% | |
GAATCGTACTACACTTTAAC+AGG | + | chr4_1:81268184-81268203 | None:intergenic | 35.0% | |
ATTTAGACCCCTTCTTACTA+AGG | - | chr4_1:81268355-81268374 | Msa0577090:intron | 35.0% | |
TCATTCTCCTTAGTAAGAAG+GGG | + | chr4_1:81268365-81268384 | None:intergenic | 35.0% | |
CAACTACTGGACTTAAAGTT+TGG | - | chr4_1:81268620-81268639 | Msa0577090:intron | 35.0% | |
AATTTCATGTGCAAGTTAGG+TGG | - | chr4_1:81268672-81268691 | Msa0577090:intron | 35.0% | |
CATTACCATCATCTGCAAAA+TGG | + | chr4_1:81269054-81269073 | None:intergenic | 35.0% | |
GTAATTTCTACACCATCACT+TGG | + | chr4_1:81269091-81269110 | None:intergenic | 35.0% | |
! | AGTTTGCTTCCTTACTAACT+TGG | + | chr4_1:81269210-81269229 | None:intergenic | 35.0% |
! | AGTGTGTTATTGTTCTTCCT+TGG | - | chr4_1:81269341-81269360 | Msa0577090:intron | 35.0% |
! | TTTTCTTTCTAAATCGAGGG+AGG | - | chr4_1:81269617-81269636 | Msa0577090:intron | 35.0% |
TTTCTTTCTAAATCGAGGGA+GGG | - | chr4_1:81269618-81269637 | Msa0577090:intron | 35.0% | |
!! | GTTTGACCTTGTCACTTTAA+GGG | + | chr4_1:81269715-81269734 | None:intergenic | 35.0% |
!! | AGTTTGACCTTGTCACTTTA+AGG | + | chr4_1:81269716-81269735 | None:intergenic | 35.0% |
TACAAACTTGGGTAGAACTT+TGG | - | chr4_1:81269771-81269790 | Msa0577090:intron | 35.0% | |
TTCACAACAACAAACTGAAG+TGG | + | chr4_1:81269881-81269900 | None:intergenic | 35.0% | |
!! | ACTTCAGTTTGTTGTTGTGA+AGG | - | chr4_1:81269880-81269899 | Msa0577090:intron | 35.0% |
AGATTGAAAGTAACCATTGC+AGG | - | chr4_1:81269931-81269950 | Msa0577090:intron | 35.0% | |
GGATCACACCAGAAATTAAA+AGG | - | chr4_1:81269952-81269971 | Msa0577090:intron | 35.0% | |
ATGAAATGATACTCCCACTA+TGG | - | chr4_1:81270112-81270131 | Msa0577090:intron | 35.0% | |
TGAAATGATACTCCCACTAT+GGG | - | chr4_1:81270113-81270132 | Msa0577090:intron | 35.0% | |
AAGCCTATCCAAGATTCATA+AGG | - | chr4_1:81270269-81270288 | Msa0577090:intron | 35.0% | |
TGACCTTATGAATCTTGGAT+AGG | + | chr4_1:81270275-81270294 | None:intergenic | 35.0% | |
AGAGATGACCTTATGAATCT+TGG | + | chr4_1:81270280-81270299 | None:intergenic | 35.0% | |
GTCTCACATTGAATATGATC+TGG | - | chr4_1:81270384-81270403 | Msa0577090:intron | 35.0% | |
GGAATTGAAAACATACTTCC+AGG | + | chr4_1:81270410-81270429 | None:intergenic | 35.0% | |
!! | GTAGGTTTTGTAGTGGAATT+TGG | + | chr4_1:81270471-81270490 | None:intergenic | 35.0% |
CAGAGAATGGTGAATAAAGA+CGG | + | chr4_1:81270536-81270555 | None:intergenic | 35.0% | |
GGGAAAAAGGAAAGAAATAG+AGG | + | chr4_1:81270589-81270608 | None:intergenic | 35.0% | |
AACAAGTCTATAAAAGGAGG+GGG | + | chr4_1:81270609-81270628 | None:intergenic | 35.0% | |
CTACTAGTATTCACAGAGTA+GGG | + | chr4_1:81270692-81270711 | None:intergenic | 35.0% | |
ACTACTAGTATTCACAGAGT+AGG | + | chr4_1:81270693-81270712 | None:intergenic | 35.0% | |
TGAGAATGGGATGTTTCAAA+TGG | - | chr4_1:81270803-81270822 | Msa0577090:intron | 35.0% | |
! | AAATGGCTGATGATGTAAGT+AGG | - | chr4_1:81270820-81270839 | Msa0577090:intron | 35.0% |
CTCAGAAAAAGGAGTAAAAG+GGG | + | chr4_1:81270949-81270968 | None:intergenic | 35.0% | |
! | ACAAAAGGTTGTCCAGATTT+TGG | - | chr4_1:81270984-81271003 | Msa0577090:intron | 35.0% |
TGCATACGAGAAACAAAAGT+TGG | + | chr4_1:81271043-81271062 | None:intergenic | 35.0% | |
GCTTGTGATTTAATCTGCTA+AGG | - | chr4_1:81271144-81271163 | Msa0577090:intron | 35.0% | |
! | TGACTTTTGCAACACACTTA+TGG | + | chr4_1:81271339-81271358 | None:intergenic | 35.0% |
TAGGAAACACAACACAAACA+TGG | + | chr4_1:81271474-81271493 | None:intergenic | 35.0% | |
TGCACTTATTGAAGCAATGA+TGG | - | chr4_1:81271508-81271527 | Msa0577090:CDS | 35.0% | |
AAATAGATTGACTGTGCTCT+TGG | - | chr4_1:81271756-81271775 | Msa0577090:CDS | 35.0% | |
! | AAAAGGGGAAAAAGGGTGTA+TGG | - | chr4_1:81266157-81266176 | Msa0577090:three_prime_UTR | 40.0% |
TTGGAGGAAGAAGAAGAAGA+AGG | + | chr4_1:81266344-81266363 | None:intergenic | 40.0% | |
CTTCAGTTGAAACTGAGGAT+TGG | - | chr4_1:81266390-81266409 | Msa0577090:three_prime_UTR | 40.0% | |
! | TCACCATAGTGAGTATTGCT+TGG | - | chr4_1:81266609-81266628 | Msa0577090:intron | 40.0% |
GAACCAAGCAATACTCACTA+TGG | + | chr4_1:81266615-81266634 | None:intergenic | 40.0% | |
TCCTATGAATAACCTTCCGT+TGG | - | chr4_1:81266707-81266726 | Msa0577090:intron | 40.0% | |
TCCAACGGAAGGTTATTCAT+AGG | + | chr4_1:81266711-81266730 | None:intergenic | 40.0% | |
!! | TGAATGTATGTTGCTTTGCC+CGG | - | chr4_1:81266770-81266789 | Msa0577090:intron | 40.0% |
GTGCTCTTCAATATTTGCAC+AGG | + | chr4_1:81266903-81266922 | None:intergenic | 40.0% | |
! | ATATTGAAGAGCACACCTGA+TGG | - | chr4_1:81266909-81266928 | Msa0577090:intron | 40.0% |
!! | AAAAGGCGCTAAACAACAGT+TGG | + | chr4_1:81267148-81267167 | None:intergenic | 40.0% |
TGGGATGATGCGAAAATTGA+TGG | - | chr4_1:81267364-81267383 | Msa0577090:intron | 40.0% | |
TACTCATTCATCACAGTCAC+AGG | - | chr4_1:81267479-81267498 | Msa0577090:intron | 40.0% | |
ACTCATTCATCACAGTCACA+GGG | - | chr4_1:81267480-81267499 | Msa0577090:intron | 40.0% | |
! | TCGCTGATCTAAAACACAGA+AGG | + | chr4_1:81267816-81267835 | None:intergenic | 40.0% |
!! | TTCTGTGTTTTAGATCAGCG+AGG | - | chr4_1:81267815-81267834 | Msa0577090:intron | 40.0% |
! | CACATGCATCTTGTTTACAG+CGG | - | chr4_1:81267888-81267907 | Msa0577090:intron | 40.0% |
! | ACATGCATCTTGTTTACAGC+GGG | - | chr4_1:81267889-81267908 | Msa0577090:intron | 40.0% |
CTGTGTAACAGTACCTGATA+TGG | + | chr4_1:81267993-81268012 | None:intergenic | 40.0% | |
GATATACTTGACTTCCACAC+AGG | - | chr4_1:81268042-81268061 | Msa0577090:intron | 40.0% | |
! | ATAAGGAGATGTTTGGGACT+TGG | - | chr4_1:81268415-81268434 | Msa0577090:intron | 40.0% |
! | TAAGGAGATGTTTGGGACTT+GGG | - | chr4_1:81268416-81268435 | Msa0577090:intron | 40.0% |
TCACAATCAGACATGACAGT+TGG | + | chr4_1:81268868-81268887 | None:intergenic | 40.0% | |
! | TGCAGATGATGGTAATGAAG+TGG | - | chr4_1:81269057-81269076 | Msa0577090:intron | 40.0% |
! | GATGATGGTAATGAAGTGGA+TGG | - | chr4_1:81269061-81269080 | Msa0577090:intron | 40.0% |
AAACAAAAGCAACACTGGTG+CGG | + | chr4_1:81269376-81269395 | None:intergenic | 40.0% | |
ATGGGAAACAAAAGCAACAC+TGG | + | chr4_1:81269381-81269400 | None:intergenic | 40.0% | |
!! | TCAAGTCTTTTGGAAGATCG+TGG | - | chr4_1:81269409-81269428 | Msa0577090:intron | 40.0% |
TTCTTTCTAAATCGAGGGAG+GGG | - | chr4_1:81269619-81269638 | Msa0577090:intron | 40.0% | |
GTTCTACCCAAGTTTGTATC+AGG | + | chr4_1:81269769-81269788 | None:intergenic | 40.0% | |
ACAAACTGAAGTGGTTCAGA+TGG | + | chr4_1:81269872-81269891 | None:intergenic | 40.0% | |
CTTTCAGAAGCTTGTACAAG+TGG | + | chr4_1:81269913-81269932 | None:intergenic | 40.0% | |
AAGAGGTTCTTCTCTCTTCT+AGG | - | chr4_1:81270010-81270029 | Msa0577090:CDS | 40.0% | |
! | ACGAACACAGAATTTGGGTT+GGG | + | chr4_1:81270245-81270264 | None:intergenic | 40.0% |
TACGAACACAGAATTTGGGT+TGG | + | chr4_1:81270246-81270265 | None:intergenic | 40.0% | |
ACATTGAATATGATCTGGCC+TGG | - | chr4_1:81270389-81270408 | Msa0577090:intron | 40.0% | |
TGAGAGTCGTTCTCATTTCT+AGG | + | chr4_1:81270431-81270450 | None:intergenic | 40.0% | |
!!! | AAGGTTGGTAGGTTTTGTAG+TGG | + | chr4_1:81270478-81270497 | None:intergenic | 40.0% |
ATATATAGGAGAATTGGCGC+AGG | + | chr4_1:81270505-81270524 | None:intergenic | 40.0% | |
AGGAAAGAAATAGAGGGAGT+CGG | + | chr4_1:81270582-81270601 | None:intergenic | 40.0% | |
CTATAAAAGGAGGGGGAAAA+AGG | + | chr4_1:81270602-81270621 | None:intergenic | 40.0% | |
ATAATGCCACTGTTCTCCAA+TGG | + | chr4_1:81270649-81270668 | None:intergenic | 40.0% | |
! | AACTTGGCCTTTATTTGTGC+AGG | - | chr4_1:81270779-81270798 | Msa0577090:intron | 40.0% |
! | ACTTGGCCTTTATTTGTGCA+GGG | - | chr4_1:81270780-81270799 | Msa0577090:intron | 40.0% |
TTCTCACCCTGCACAAATAA+AGG | + | chr4_1:81270789-81270808 | None:intergenic | 40.0% | |
TTATTTGTGCAGGGTGAGAA+TGG | - | chr4_1:81270789-81270808 | Msa0577090:intron | 40.0% | |
TATTTGTGCAGGGTGAGAAT+GGG | - | chr4_1:81270790-81270809 | Msa0577090:intron | 40.0% | |
!! | ATCAGAGTGCCACTTACAAA+AGG | - | chr4_1:81270969-81270988 | Msa0577090:intron | 40.0% |
! | TCTGGACAACCTTTTGTAAG+TGG | + | chr4_1:81270981-81271000 | None:intergenic | 40.0% |
CTAAGGCAACATTTGTGAAC+AGG | - | chr4_1:81271161-81271180 | Msa0577090:intron | 40.0% | |
AAATTCAGTCTCCTCGTCTA+TGG | + | chr4_1:81271217-81271236 | None:intergenic | 40.0% | |
GGAGACTGAATTTAATGCCT+TGG | - | chr4_1:81271224-81271243 | Msa0577090:intron | 40.0% | |
GACTGAATTTAATGCCTTGG+TGG | - | chr4_1:81271227-81271246 | Msa0577090:intron | 40.0% | |
AATGAAGTCACATACCACCA+AGG | + | chr4_1:81271244-81271263 | None:intergenic | 40.0% | |
GTTTGTGTTGTGTTTCCTAC+AGG | - | chr4_1:81271475-81271494 | Msa0577090:CDS | 40.0% | |
GAGGAAGAAGAAGAAGAAGG+AGG | + | chr4_1:81266341-81266360 | None:intergenic | 45.0% | |
!! | GTTGTTACTGGTGTTGCTTC+TGG | - | chr4_1:81266482-81266501 | Msa0577090:exon | 45.0% |
! | GTTTTCGTCAATGGCAAACC+CGG | + | chr4_1:81266555-81266574 | None:intergenic | 45.0% |
GGGTTTGCCATTGACGAAAA+CGG | - | chr4_1:81266554-81266573 | Msa0577090:intron | 45.0% | |
!! | TGTGTTTTAGATCAGCGAGG+AGG | - | chr4_1:81267818-81267837 | Msa0577090:intron | 45.0% |
GAATGCGTTTATCATCACCC+TGG | + | chr4_1:81268949-81268968 | None:intergenic | 45.0% | |
TCTTTCTAAATCGAGGGAGG+GGG | - | chr4_1:81269620-81269639 | Msa0577090:intron | 45.0% | |
AAGGACTTCAAATCTCGTCG+GGG | + | chr4_1:81269692-81269711 | None:intergenic | 45.0% | |
GAAGGACTTCAAATCTCGTC+GGG | + | chr4_1:81269693-81269712 | None:intergenic | 45.0% | |
GGAAGGACTTCAAATCTCGT+CGG | + | chr4_1:81269694-81269713 | None:intergenic | 45.0% | |
GTCCTTCCCTTAAAGTGACA+AGG | - | chr4_1:81269706-81269725 | Msa0577090:intron | 45.0% | |
!! | GACCTTGTCACTTTAAGGGA+AGG | + | chr4_1:81269711-81269730 | None:intergenic | 45.0% |
AGACGGCCTGATACAAACTT+GGG | - | chr4_1:81269760-81269779 | Msa0577090:intron | 45.0% | |
! | TTTCTGGTGTGATCCTGCAA+TGG | + | chr4_1:81269947-81269966 | None:intergenic | 45.0% |
CATTTGGAAGGTGACTTGAG+TGG | + | chr4_1:81270322-81270341 | None:intergenic | 45.0% | |
ACCTTCCAAATGTTCAGTCC+TGG | - | chr4_1:81270330-81270349 | Msa0577090:intron | 45.0% | |
TCCAGGACTGAACATTTGGA+AGG | + | chr4_1:81270334-81270353 | None:intergenic | 45.0% | |
CATGTCCAGGACTGAACATT+TGG | + | chr4_1:81270338-81270357 | None:intergenic | 45.0% | |
AATGTTCAGTCCTGGACATG+AGG | - | chr4_1:81270338-81270357 | Msa0577090:intron | 45.0% | |
ATGTTCAGTCCTGGACATGA+GGG | - | chr4_1:81270339-81270358 | Msa0577090:intron | 45.0% | |
! | TGTAGTGGAATTTGGGACTG+CGG | + | chr4_1:81270463-81270482 | None:intergenic | 45.0% |
GAAAGAAATAGAGGGAGTCG+GGG | + | chr4_1:81270580-81270599 | None:intergenic | 45.0% | |
GGAAAGAAATAGAGGGAGTC+GGG | + | chr4_1:81270581-81270600 | None:intergenic | 45.0% | |
AAGATGCCTGTCATTGCCAT+TGG | - | chr4_1:81270630-81270649 | Msa0577090:intron | 45.0% | |
TGTTCTCCAATGGCAATGAC+AGG | + | chr4_1:81270639-81270658 | None:intergenic | 45.0% | |
TCATTGCCATTGGAGAACAG+TGG | - | chr4_1:81270640-81270659 | Msa0577090:intron | 45.0% | |
GGCACTCTGATCTCAGAAAA+AGG | + | chr4_1:81270960-81270979 | None:intergenic | 45.0% | |
! | GCCTTAATATTTTCCGGCTG+TGG | - | chr4_1:81271009-81271028 | Msa0577090:intron | 45.0% |
GCCACAGCCGGAAAATATTA+AGG | + | chr4_1:81271013-81271032 | None:intergenic | 45.0% | |
CATTTGTGAACAGGACTTGC+TGG | - | chr4_1:81271170-81271189 | Msa0577090:intron | 45.0% | |
GCTCAGGTCAATGAGCAAAT+TGG | + | chr4_1:81271793-81271812 | None:intergenic | 45.0% | |
TTTGCTCATTGACCTGAGCA+CGG | - | chr4_1:81271794-81271813 | Msa0577090:CDS | 45.0% | |
AATTGCAACTGCTGCTGCTG+AGG | + | chr4_1:81266195-81266214 | None:intergenic | 50.0% | |
TCCTGATGATATGCCGTTGC+CGG | - | chr4_1:81266520-81266539 | Msa0577090:CDS | 50.0% | |
TAACCTTCCGTTGGAGTGTG+TGG | - | chr4_1:81266716-81266735 | Msa0577090:intron | 50.0% | |
TTCCGTTGGAGTGTGTGGTT+CGG | - | chr4_1:81266721-81266740 | Msa0577090:intron | 50.0% | |
! | TGAAGAGCACACCTGATGGA+TGG | - | chr4_1:81266913-81266932 | Msa0577090:intron | 50.0% |
CTTACAGCTGACCATCCATC+AGG | + | chr4_1:81266927-81266946 | None:intergenic | 50.0% | |
! | AGGTACTGTTACACAGCACG+TGG | - | chr4_1:81267997-81268016 | Msa0577090:intron | 50.0% |
TACTGTTACACAGCACGTGG+CGG | - | chr4_1:81268000-81268019 | Msa0577090:intron | 50.0% | |
TGGTGCGGTAATACAGACCA+AGG | + | chr4_1:81269361-81269380 | None:intergenic | 50.0% | |
GAAGCGTGACAAAGGAACCT+CGG | - | chr4_1:81269580-81269599 | Msa0577090:intron | 50.0% | |
AAGCGTGACAAAGGAACCTC+GGG | - | chr4_1:81269581-81269600 | Msa0577090:intron | 50.0% | |
AAAAGTCTGCATCAAGCCCG+AGG | + | chr4_1:81269600-81269619 | None:intergenic | 50.0% | |
CAGACGGCCTGATACAAACT+TGG | - | chr4_1:81269759-81269778 | Msa0577090:intron | 50.0% | |
ACACAATCTCCCTCATGTCC+AGG | + | chr4_1:81270351-81270370 | None:intergenic | 50.0% | |
TATAGGAGAATTGGCGCAGG+AGG | + | chr4_1:81270502-81270521 | None:intergenic | 50.0% | |
TCTATGGCGTCAATGACAGC+AGG | + | chr4_1:81271201-81271220 | None:intergenic | 50.0% | |
TGTCATTGACGCCATAGACG+AGG | - | chr4_1:81271203-81271222 | Msa0577090:intron | 50.0% | |
GTGCAGCTTCTTCTTCCTGT+AGG | + | chr4_1:81271493-81271512 | None:intergenic | 50.0% | |
CGGTAAAATCAACCGTGCTC+AGG | + | chr4_1:81271809-81271828 | None:intergenic | 50.0% | |
TCCGGCAACGGCATATCATC+AGG | + | chr4_1:81266524-81266543 | None:intergenic | 55.0% | |
TCGTCAATGGCAAACCCGGT+GGG | + | chr4_1:81266551-81266570 | None:intergenic | 55.0% | |
TTCGTCAATGGCAAACCCGG+TGG | + | chr4_1:81266552-81266571 | None:intergenic | 55.0% | |
GAACCACACACTCCAACGGA+AGG | + | chr4_1:81266722-81266741 | None:intergenic | 55.0% | |
CTCCGAACCACACACTCCAA+CGG | + | chr4_1:81266726-81266745 | None:intergenic | 55.0% | |
! | GTGGATGGCTTGCCAAGTGA+TGG | - | chr4_1:81269076-81269095 | Msa0577090:intron | 55.0% |
! | TCTGCGAGGTGTCAACTCAG+TGG | + | chr4_1:81269743-81269762 | None:intergenic | 55.0% |
! | CTGAGTTGACACCTCGCAGA+CGG | - | chr4_1:81269743-81269762 | Msa0577090:intron | 55.0% |
TTTGTATCAGGCCGTCTGCG+AGG | + | chr4_1:81269757-81269776 | None:intergenic | 55.0% | |
ATTGGCGCAGGAGGAAAGGT+TGG | + | chr4_1:81270493-81270512 | None:intergenic | 55.0% | |
GAGAATTGGCGCAGGAGGAA+AGG | + | chr4_1:81270497-81270516 | None:intergenic | 55.0% | |
GGACAGATGGGAGCAGAGAA+TGG | + | chr4_1:81270549-81270568 | None:intergenic | 55.0% | |
GGGGTGCAATGAGGACAGAT+GGG | + | chr4_1:81270561-81270580 | None:intergenic | 55.0% | |
TCAATGGCAAACCCGGTGGG+AGG | + | chr4_1:81266548-81266567 | None:intergenic | 60.0% | |
! | GCGCAGGAGGAAAGGTTGGT+AGG | + | chr4_1:81270489-81270508 | None:intergenic | 60.0% |
CGGGGTGCAATGAGGACAGA+TGG | + | chr4_1:81270562-81270581 | None:intergenic | 60.0% | |
GTTGGAACGCATGCCACAGC+CGG | + | chr4_1:81271025-81271044 | None:intergenic | 60.0% | |
GCAAACCCGGTGGGAGGTTC+CGG | + | chr4_1:81266542-81266561 | None:intergenic | 65.0% | |
GAGGGAGTCGGGGTGCAATG+AGG | + | chr4_1:81270570-81270589 | None:intergenic | 65.0% | |
CCGGTGGGAGGTTCCGGCAA+CGG | + | chr4_1:81266536-81266555 | None:intergenic | 70.0% | |
CCGTTGCCGGAACCTCCCAC+CGG | - | chr4_1:81266533-81266552 | Msa0577090:CDS | 70.0% | |
CGTTGCCGGAACCTCCCACC+GGG | - | chr4_1:81266534-81266553 | Msa0577090:CDS | 70.0% | |
GCGAGCGCATACGCTGCAGC+AGG | + | chr4_1:81267861-81267880 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 81266127 | 81271927 | 81266127 | ID=Msa0577090;Name=Msa0577090 |
chr4_1 | mRNA | 81266127 | 81271927 | 81266127 | ID=Msa0577090-mRNA-1;Parent=Msa0577090;Name=Msa0577090-mRNA-1;_AED=0.09;_eAED=0.09;_QI=49|1|1|1|0.9|0.81|11|352|335 |
chr4_1 | exon | 81266127 | 81266184 | 81266127 | ID=Msa0577090-mRNA-1:exon:29247;Parent=Msa0577090-mRNA-1 |
chr4_1 | exon | 81266207 | 81266557 | 81266207 | ID=Msa0577090-mRNA-1:exon:29246;Parent=Msa0577090-mRNA-1 |
chr4_1 | exon | 81266806 | 81266871 | 81266806 | ID=Msa0577090-mRNA-1:exon:29245;Parent=Msa0577090-mRNA-1 |
chr4_1 | exon | 81267221 | 81267253 | 81267221 | ID=Msa0577090-mRNA-1:exon:29244;Parent=Msa0577090-mRNA-1 |
chr4_1 | exon | 81268153 | 81268212 | 81268153 | ID=Msa0577090-mRNA-1:exon:29243;Parent=Msa0577090-mRNA-1 |
chr4_1 | exon | 81268931 | 81268992 | 81268931 | ID=Msa0577090-mRNA-1:exon:29242;Parent=Msa0577090-mRNA-1 |
chr4_1 | exon | 81269991 | 81270055 | 81269991 | ID=Msa0577090-mRNA-1:exon:29241;Parent=Msa0577090-mRNA-1 |
chr4_1 | exon | 81270144 | 81270226 | 81270144 | ID=Msa0577090-mRNA-1:exon:29240;Parent=Msa0577090-mRNA-1 |
chr4_1 | exon | 81271113 | 81271155 | 81271113 | ID=Msa0577090-mRNA-1:exon:29239;Parent=Msa0577090-mRNA-1 |
chr4_1 | exon | 81271255 | 81271352 | 81271255 | ID=Msa0577090-mRNA-1:exon:29238;Parent=Msa0577090-mRNA-1 |
chr4_1 | exon | 81271438 | 81271927 | 81271438 | ID=Msa0577090-mRNA-1:exon:29237;Parent=Msa0577090-mRNA-1 |
chr4_1 | five_prime_UTR | 81271879 | 81271927 | 81271879 | ID=Msa0577090-mRNA-1:five_prime_utr;Parent=Msa0577090-mRNA-1 |
chr4_1 | CDS | 81271438 | 81271878 | 81271438 | ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1 |
chr4_1 | CDS | 81271255 | 81271352 | 81271255 | ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1 |
chr4_1 | CDS | 81271113 | 81271155 | 81271113 | ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1 |
chr4_1 | CDS | 81270144 | 81270226 | 81270144 | ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1 |
chr4_1 | CDS | 81269991 | 81270055 | 81269991 | ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1 |
chr4_1 | CDS | 81268931 | 81268992 | 81268931 | ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1 |
chr4_1 | CDS | 81268153 | 81268212 | 81268153 | ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1 |
chr4_1 | CDS | 81267221 | 81267253 | 81267221 | ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1 |
chr4_1 | CDS | 81266806 | 81266871 | 81266806 | ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1 |
chr4_1 | CDS | 81266501 | 81266557 | 81266501 | ID=Msa0577090-mRNA-1:cds;Parent=Msa0577090-mRNA-1 |
chr4_1 | three_prime_UTR | 81266207 | 81266500 | 81266207 | ID=Msa0577090-mRNA-1:three_prime_utr;Parent=Msa0577090-mRNA-1 |
chr4_1 | three_prime_UTR | 81266127 | 81266184 | 81266127 | ID=Msa0577090-mRNA-1:three_prime_utr;Parent=Msa0577090-mRNA-1 |
Gene Sequence |
Protein sequence |