AlfalfaGEDB | Msa0114240

M. sativa cultivar zhongmu-4 / Msa0114240

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0114240	XP_024634070.1	98.780	82	1	0	1	82	339	420	1.15e-47	166

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0114240	sp\|F4J264\|PRFB3_ARATH	60.494	81	31	1	1	81	321	400	1.72e-20	86.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0114240	A0A396JS10	98.780	82	1	0	1	82	339	420	5.52e-48	166

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa0114240	0.830901	2.262324e-55	-8.615850e-47
Msa0006700	Msa0114240	0.833336	5.653409e-56	-8.615850e-47
Msa0008850	Msa0114240	0.842759	2.124836e-58	-8.615850e-47
Msa0012780	Msa0114240	-0.802455	5.565302e-49	-8.615850e-47
Msa0012820	Msa0114240	-0.820042	8.451043e-53	-8.615850e-47
Msa0017120	Msa0114240	0.823537	1.313444e-53	-8.615850e-47
Msa0020630	Msa0114240	0.892778	1.159763e-74	-8.615850e-47
Msa0027540	Msa0114240	0.826062	3.333663e-54	-8.615850e-47
Msa0029290	Msa0114240	0.804148	2.482724e-49	-8.615850e-47
Msa0029620	Msa0114240	0.810999	8.718421e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0114240	MtrunA17_Chr1g0172361	98.780	82	1	0	1	82	339	420	1.06e-51	166
Msa0114240	MtrunA17_Chr7g0249581	46.914	81	43	0	1	81	380	460	6.63e-18	76.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0114240	AT3G57190.1	60.494	81	31	1	1	81	321	400	1.75e-21	86.7
Msa0114240	AT5G36170.2	51.948	77	37	0	2	78	365	441	3.69e-19	80.1
Msa0114240	AT5G36170.1	51.948	77	37	0	2	78	366	442	3.70e-19	80.1

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Find 84 sgRNAs with CRISPR-Local

Find 709 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTGGTTAGTTTGTAA+AGG	0.483159	1_3:+30752259	None:intergenic
AAATGGCCGCTAAGGAGGAA+TGG	0.594581	1_3:-30751946	Msa0114240:five_prime_UTR
AACATTTCTTTACAATACGT+TGG	0.564790	1_3:-30752165	Msa0114240:five_prime_UTR
AACCCATATGGTGAAGAGAA+AGG	0.556476	1_3:-30752138	Msa0114240:five_prime_UTR
AATTGGGCCAAACATTAGTC+TGG	0.375224	1_3:+30752001	None:intergenic
ACATCATGTACTAACTTGTA+TGG	0.392795	1_3:+30750514	None:intergenic
ACGTTACTGTATTCTTAATT+TGG	0.261253	1_3:-30750190	Msa0114240:three_prime_UTR
ACTTGTAACAGTGTTGTTGA+TGG	0.463169	1_3:+30751808	None:intergenic
AGACGAGATAATCAAATCCT+CGG	0.589811	1_3:+30751634	None:intergenic
AGATCTTAATAGGTTAACAT+TGG	0.555489	1_3:-30752437	Msa0114240:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATCAAAACAATAATGCAG+AGG	-	chr1_3:30750353-30750372	Msa0114240:three_prime_UTR	30.0%
CAGAAAAATAAAGATAGCCT+AGG	+	chr1_3:30750567-30750586	None:intergenic	30.0%
TGATTACAATGGTTGAACAA+CGG	+	chr1_3:30750603-30750622	None:intergenic	30.0%
AATCCAGTTAGAGTTCAAAT+GGG	+	chr1_3:30750636-30750655	None:intergenic	30.0%
TAATCCAGTTAGAGTTCAAA+TGG	+	chr1_3:30750637-30750656	None:intergenic	30.0%
CCATAATTTCTGCTAAATCA+TGG	+	chr1_3:30751502-30751521	None:intergenic	30.0%
CCATGATTTAGCAGAAATTA+TGG	-	chr1_3:30751499-30751518	Msa0114240:intron	30.0%
ATTTAGCAGAAATTATGGAC+AGG	-	chr1_3:30751504-30751523	Msa0114240:intron	30.0%
TTTAGCAGAAATTATGGACA+GGG	-	chr1_3:30751505-30751524	Msa0114240:intron	30.0%
AGATTTCATTGGAGTTAAGA+AGG	-	chr1_3:30751619-30751638	Msa0114240:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	30750166	30758166	30750166	ID=Msa0114240;Name=Msa0114240
chr1_3	mRNA	30750166	30758166	30750166	ID=Msa0114240-mRNA-1;Parent=Msa0114240;Name=Msa0114240-mRNA-1;_AED=0.25;_eAED=0.25;_QI=1160\|1\|1\|1\|0.5\|0.33\|3\|257\|82
chr1_3	exon	30750166	30750697	30750166	ID=Msa0114240-mRNA-1:exon:10183;Parent=Msa0114240-mRNA-1
chr1_3	exon	30751546	30752545	30751546	ID=Msa0114240-mRNA-1:exon:10182;Parent=Msa0114240-mRNA-1
chr1_3	exon	30758033	30758166	30758033	ID=Msa0114240-mRNA-1:exon:10181;Parent=Msa0114240-mRNA-1
chr1_3	five_prime_UTR	30758033	30758166	30758033	ID=Msa0114240-mRNA-1:five_prime_utr;Parent=Msa0114240-mRNA-1
chr1_3	five_prime_UTR	30751546	30752545	30751546	ID=Msa0114240-mRNA-1:five_prime_utr;Parent=Msa0114240-mRNA-1
chr1_3	five_prime_UTR	30750672	30750697	30750672	ID=Msa0114240-mRNA-1:five_prime_utr;Parent=Msa0114240-mRNA-1
chr1_3	CDS	30750423	30750671	30750423	ID=Msa0114240-mRNA-1:cds;Parent=Msa0114240-mRNA-1
chr1_3	three_prime_UTR	30750166	30750422	30750166	ID=Msa0114240-mRNA-1:three_prime_utr;Parent=Msa0114240-mRNA-1

Gene Sequence	>Msa0114240 ATGAAAGCACTAAACAGATTGAAAGCTAAACTTCAAGTGATAGCAATTGAACAAGGAGTTGGTAGTATAAATGGTATAGTGAAGGATAAAATTGTGAATCTGTGGGAAGAAAAAACTAGGAGGTATGTATCTCATCCATACAAGTTAGTACATGATGTAAAGACTGGCATTGAGATGTCAGATCTAAATAGTGTTTTAGATGGGAATATTGGACCTCTTATTGCGGCTCATATTAATACTAGAGAGTAA
Protein sequence	>Msa0114240 MKALNRLKAKLQVIAIEQGVGSINGIVKDKIVNLWEEKTRRYVSHPYKLVHDVKTGIEMSDLNSVLDGNIGPLIAAHINTRE*