AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0206940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0206940 MtrunA17_Chr2g0305781 100.000 331 0 0 1 331 216 546 0.0 660
Msa0206940 MtrunA17_Chr7g0259761 26.380 326 219 9 6 313 209 531 7.16e-27 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0206940 AT2G18710.1 85.801 331 47 0 1 331 219 549 0.0 580
Msa0206940 AT2G31530.1 26.462 325 220 9 6 313 237 559 1.25e-22 99.0

Find 84 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGCTTACCTACCGTTTA+AGG 0.117513 2_1:+37048565 Msa0206940:CDS
TTATCAATCAATGGAAATTA+TGG 0.209023 2_1:+37049792 Msa0206940:three_prime_UTR
ATGGAAATTATGGATATAAA+AGG 0.233988 2_1:+37049802 Msa0206940:three_prime_UTR
TGCACACTTGACTGCATTCC+GGG 0.270529 2_1:+37049489 Msa0206940:CDS
AGGTTCCATTCCCAAGTTTC+AGG 0.271250 2_1:-37048242 None:intergenic
TCTTACTTGCCAGCTTCTTT+TGG 0.293036 2_1:+37048291 Msa0206940:CDS
AATCTAGACGCGTAGTTAAT+AGG 0.304266 2_1:-37048515 None:intergenic
TCTTAGTCGAATATCAGTTC+TGG 0.312877 2_1:+37049414 Msa0206940:CDS
ACTGCATTCCGGGGATTTGC+TGG 0.320442 2_1:+37049499 Msa0206940:CDS
GCTATCAAAAGTATGTTAAA+TGG 0.328201 2_1:-37049138 None:intergenic
ACATCTATTCTTATTCTTGT+TGG 0.328592 2_1:+37049523 Msa0206940:CDS
CTGCACACTTGACTGCATTC+CGG 0.330585 2_1:+37049488 Msa0206940:CDS
AGAATGTAGAACGTCAAAAT+AGG 0.337198 2_1:-37049869 None:intergenic
AATTGTTCGCTCACATCATC+TGG 0.339654 2_1:-37049198 None:intergenic
CTATTACACTTTCCTACAAC+TGG 0.344454 2_1:+37049173 Msa0206940:CDS
GGAAACAACCAATCATTTAA+TGG 0.350131 2_1:-37049637 None:intergenic
TCCTTCTTTCTGTTGGTAGT+TGG 0.350967 2_1:+37048375 Msa0206940:CDS
GGCAAGCCGTGGCTCGTGGC+CGG 0.353467 2_1:+37049825 Msa0206940:three_prime_UTR
AGTATTGACCATTAAATGAT+TGG 0.370320 2_1:+37049629 Msa0206940:exon
ACATCATCGTTAGCTCTTCC+TGG 0.375335 2_1:+37048766 Msa0206940:CDS
GCAGTCTGCTCAACAATTGC+AGG 0.392772 2_1:-37049469 None:intergenic
GCAAGCCGTGGCTCGTGGCC+GGG 0.400570 2_1:+37049826 Msa0206940:three_prime_UTR
CAAATTACTGACCTGAAACT+TGG 0.408846 2_1:+37048231 Msa0206940:CDS
CCGTGATTACAACGTACATT+GGG 0.408942 2_1:+37048205 Msa0206940:CDS
CTTAGTCGAATATCAGTTCT+GGG 0.412406 2_1:+37049415 Msa0206940:CDS
TGGAAATTATGGATATAAAA+GGG 0.417334 2_1:+37049803 Msa0206940:three_prime_UTR
CATCATCTGGATCCAGTTGT+AGG 0.418316 2_1:-37049185 None:intergenic
CATTGTGTCCTTCTTTCTGT+TGG 0.429476 2_1:+37048368 Msa0206940:CDS
TGCTCTGCAAAATTATATAC+AGG 0.433383 2_1:-37049694 None:intergenic
AGTTGGAATTGTCTATGTTC+AGG 0.434605 2_1:+37048392 Msa0206940:CDS
TTTGGCAGGTCAATAGTTCT+GGG 0.435453 2_1:+37048722 Msa0206940:intron
TGTTGGATTCGCCATTGTAC+AGG 0.467660 2_1:+37047247 Msa0206940:CDS
TACACTCGATATGCTTCTGT+TGG 0.467789 2_1:+37047230 Msa0206940:CDS
TCTGTAATGTAAAGATCAAT+CGG 0.473409 2_1:+37049736 Msa0206940:three_prime_UTR
GATGATGTAGAAAATATGAT+AGG 0.473627 2_1:-37048751 None:intergenic
GGTACTTTAGCACGTTTCAC+TGG 0.478650 2_1:+37048787 Msa0206940:CDS
AAAGATGAGAGGACCTTAAA+CGG 0.479005 2_1:-37048578 None:intergenic
TATGTTAAATGGAAGATAGA+AGG 0.481243 2_1:-37049127 None:intergenic
GAACTAGGTTTATCAATCAA+TGG 0.481868 2_1:+37049783 Msa0206940:three_prime_UTR
TCAGTTGTTTGCATAGAACT+AGG 0.486363 2_1:+37049768 Msa0206940:three_prime_UTR
TGTTGTAAAGTCATTTACAT+AGG 0.488090 2_1:-37048142 None:intergenic
GTTCTATGCAAACAACTGAA+TGG 0.491612 2_1:-37049764 None:intergenic
TCTGTTATCTTATTGACACT+TGG 0.501427 2_1:+37048180 Msa0206940:CDS
CAGAAAAGAGAAGGTGAGGC+TGG 0.502761 2_1:+37047188 Msa0206940:CDS
AGTGTAATAGTAGTTGAAGA+AGG 0.517143 2_1:-37049160 None:intergenic
TCCGTGATTACAACGTACAT+TGG 0.519948 2_1:+37048204 Msa0206940:CDS
TGGCTCGTGGCCGGGTGATG+TGG 0.524927 2_1:+37049834 Msa0206940:three_prime_UTR
CAAACAACTGCCACATCACC+CGG 0.527409 2_1:-37049844 None:intergenic
GCTGCAGTAGCTTTGAATCC+AGG 0.527425 2_1:+37048829 Msa0206940:CDS
AATGTAGCTGTACTTCTGCC+TGG 0.528569 2_1:-37049255 None:intergenic
GTTGTAAAGTCATTTACATA+GGG 0.531063 2_1:-37048141 None:intergenic
AAATTACTGACCTGAAACTT+GGG 0.532762 2_1:+37048232 Msa0206940:CDS
CCCAATGTACGTTGTAATCA+CGG 0.539847 2_1:-37048205 None:intergenic
TCCAACTACCAACAGAAAGA+AGG 0.539872 2_1:-37048376 None:intergenic
CAGAAAGAAGGACACAATGA+TGG 0.551543 2_1:-37048364 None:intergenic
ACTGACCTGAAACTTGGGAA+TGG 0.555203 2_1:+37048237 Msa0206940:CDS
CATCACCCGGCCACGAGCCA+CGG 0.557008 2_1:-37049831 None:intergenic
AATGTCCGACCAAAAGAAGC+TGG 0.561861 2_1:-37048300 None:intergenic
GGTAACAAGTCCGACATAGT+TGG 0.563139 2_1:-37048343 None:intergenic
TCTTCAGAAAAGAGAAGGTG+AGG 0.569860 2_1:+37047184 Msa0206940:CDS
CAAGATCTTCAGAAAAGAGA+AGG 0.570295 2_1:+37047179 Msa0206940:CDS
TCAATTCCACTTGTCAGACC+AGG 0.572539 2_1:+37049237 Msa0206940:CDS
GGAAATTATGGATATAAAAG+GGG 0.578428 2_1:+37049804 Msa0206940:three_prime_UTR
TTTAATGATGCCAACTATGT+CGG 0.578808 2_1:+37048333 Msa0206940:CDS
AAGGGGCAAGCCGTGGCTCG+TGG 0.579714 2_1:+37049821 Msa0206940:three_prime_UTR
GCACACTTGACTGCATTCCG+GGG 0.581736 2_1:+37049490 Msa0206940:CDS
TAGATGTTCCAGCAAATCCC+CGG 0.583086 2_1:-37049507 None:intergenic
CTTCTGCCTGGTCTGACAAG+TGG 0.593403 2_1:-37049243 None:intergenic
AGCGAACAATTGAAACGTCA+AGG 0.598941 2_1:+37049210 Msa0206940:CDS
GTTTGTGAATATCAAAAGAG+AGG 0.599776 2_1:-37048262 None:intergenic
AGGGACGCAGGAAAAGAACT+TGG 0.600736 2_1:-37048122 None:intergenic
ATGAGAGGACCTTAAACGGT+AGG 0.606091 2_1:-37048574 None:intergenic
TAAATTTCTGACCTGTACAA+TGG 0.607947 2_1:-37047258 None:intergenic
TCTAGATTCACCAGCAAAAG+CGG 0.612020 2_1:+37048530 Msa0206940:CDS
GTGAAACGTGCTAAAGTACC+AGG 0.612842 2_1:-37048784 None:intergenic
AACTATAATTCTGTAGACAA+AGG 0.613035 2_1:-37049658 None:intergenic
GATATAAAAGGGGCAAGCCG+TGG 0.622664 2_1:+37049814 Msa0206940:three_prime_UTR
AAATGACTTTACAACAGAGT+GGG 0.636424 2_1:+37048149 Msa0206940:CDS
TTGGCAGGTCAATAGTTCTG+GGG 0.643969 2_1:+37048723 Msa0206940:intron
AGTCATTTACATAGGGACGC+AGG 0.644501 2_1:-37048134 None:intergenic
TAAATGACTTTACAACAGAG+TGG 0.657979 2_1:+37048148 Msa0206940:CDS
AGATTCACCAGCAAAAGCGG+TGG 0.659232 2_1:+37048533 Msa0206940:CDS
CGTGATTACAACGTACATTG+GGG 0.663302 2_1:+37048206 Msa0206940:CDS
GCAGTAGCTTTGAATCCAGG+AGG 0.714613 2_1:+37048832 Msa0206940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATATAAAATATAATATA+TGG + chr2_1:37049384-37049403 Msa0206940:intron 0.0%
!! TTGATTTCAAAATTAATTCA+TGG - chr2_1:37047712-37047731 None:intergenic 15.0%
!!! ATGAATTAATTTTGAAATCA+AGG + chr2_1:37047711-37047730 Msa0206940:intron 15.0%
!!! TGAATTAATTTTGAAATCAA+GGG + chr2_1:37047712-37047731 Msa0206940:intron 15.0%
!! ACAAAAACAAAATTATAAAC+TGG - chr2_1:37048075-37048094 None:intergenic 15.0%
!!! CAATTTTATTATTATAAACC+CGG - chr2_1:37048876-37048895 None:intergenic 15.0%
!! AAAATGTACATTTAAGTAAA+GGG - chr2_1:37049095-37049114 None:intergenic 15.0%
!! AAAAATGTACATTTAAGTAA+AGG - chr2_1:37049096-37049115 None:intergenic 15.0%
!!! AAATGTACATTTTTTTTTGT+AGG + chr2_1:37049102-37049121 Msa0206940:intron 15.0%
!! TATTTGAATTCATGAAGAAA+AGG - chr2_1:37047348-37047367 None:intergenic 20.0%
!! AAACTTTGAATAAATCATGA+AGG - chr2_1:37047536-37047555 None:intergenic 20.0%
!! AGTAGAAAAAGATTTATGTT+AGG + chr2_1:37047664-37047683 Msa0206940:intron 20.0%
!! GTAGAAAAAGATTTATGTTA+GGG + chr2_1:37047665-37047684 Msa0206940:intron 20.0%
!! ATATTGTAATTACTGCATTT+AGG + chr2_1:37047791-37047810 Msa0206940:intron 20.0%
!! TATTGTAATTACTGCATTTA+GGG + chr2_1:37047792-37047811 Msa0206940:intron 20.0%
!! AGAAATGTTTGATGAAATAT+AGG + chr2_1:37048988-37049007 Msa0206940:intron 20.0%
!! ATTAAGTGATGTAAAATGAA+TGG - chr2_1:37049369-37049388 None:intergenic 20.0%
!! TAAAATATAATATATGGTGC+AGG + chr2_1:37049390-37049409 Msa0206940:intron 20.0%
!! TTATCAATCAATGGAAATTA+TGG + chr2_1:37049792-37049811 Msa0206940:three_prime_UTR 20.0%
!! ATGGAAATTATGGATATAAA+AGG + chr2_1:37049802-37049821 Msa0206940:three_prime_UTR 20.0%
!! TGGAAATTATGGATATAAAA+GGG + chr2_1:37049803-37049822 Msa0206940:three_prime_UTR 20.0%
!!! TCTTATTCTTTGAGATTCAT+AGG + chr2_1:37047502-37047521 Msa0206940:intron 25.0%
! CTTGTTGAGATAATGTTAAA+AGG + chr2_1:37047586-37047605 Msa0206940:intron 25.0%
!! TAACTTTAAAGAGTTACTCT+TGG + chr2_1:37047748-37047767 Msa0206940:intron 25.0%
! AGTAATTACAATATAGAGGA+GGG - chr2_1:37047785-37047804 None:intergenic 25.0%
! ATGCAGTAATTACAATATAG+AGG - chr2_1:37047789-37047808 None:intergenic 25.0%
! TATAACCAAGAGTCATTAAT+AGG - chr2_1:37047832-37047851 None:intergenic 25.0%
!! TGTTCTTCAATTTTCATTAC+AGG + chr2_1:37048092-37048111 Msa0206940:intron 25.0%
! GTTGTAAAGTCATTTACATA+GGG - chr2_1:37048144-37048163 None:intergenic 25.0%
! TGTTGTAAAGTCATTTACAT+AGG - chr2_1:37048145-37048164 None:intergenic 25.0%
! TACAGTAACATAAAAAAGGT+TGG - chr2_1:37048606-37048625 None:intergenic 25.0%
! GTACTACAGTAACATAAAAA+AGG - chr2_1:37048610-37048629 None:intergenic 25.0%
! TATCAAATACTATTCGAGTA+AGG - chr2_1:37048632-37048651 None:intergenic 25.0%
! AACATCTACATTGTCAAATT+TGG - chr2_1:37048698-37048717 None:intergenic 25.0%
!! ACAATGTAGATGTTCTATTT+TGG + chr2_1:37048704-37048723 Msa0206940:intron 25.0%
! GATGATGTAGAAAATATGAT+AGG - chr2_1:37048754-37048773 None:intergenic 25.0%
! AAGTAAAGGGAATCAATTTA+TGG - chr2_1:37049082-37049101 None:intergenic 25.0%
! TATGTTAAATGGAAGATAGA+AGG - chr2_1:37049130-37049149 None:intergenic 25.0%
!! GCTATCAAAAGTATGTTAAA+TGG - chr2_1:37049141-37049160 None:intergenic 25.0%
! ATTAATCAGTAAGGAAATCA+AGG - chr2_1:37049322-37049341 None:intergenic 25.0%
! ACATCTATTCTTATTCTTGT+TGG + chr2_1:37049523-37049542 Msa0206940:CDS 25.0%
!!! AGTATTGACCATTAAATGAT+TGG + chr2_1:37049629-37049648 Msa0206940:exon 25.0%
! AACTATAATTCTGTAGACAA+AGG - chr2_1:37049661-37049680 None:intergenic 25.0%
! TCTGTAATGTAAAGATCAAT+CGG + chr2_1:37049736-37049755 Msa0206940:three_prime_UTR 25.0%
! GGAAATTATGGATATAAAAG+GGG + chr2_1:37049804-37049823 Msa0206940:three_prime_UTR 25.0%
TAAATTTCTGACCTGTACAA+TGG - chr2_1:37047261-37047280 None:intergenic 30.0%
CAAGTGAAAAATGTCTTCAT+AGG + chr2_1:37047370-37047389 Msa0206940:intron 30.0%
TCTTCATGAATGATTCGTAA+AGG + chr2_1:37047401-37047420 Msa0206940:intron 30.0%
ATTGAACGACTCCTATAATT+CGG - chr2_1:37047434-37047453 None:intergenic 30.0%
TGAAATCAAGGGATATGATT+TGG + chr2_1:37047723-37047742 Msa0206940:intron 30.0%
CAGTAATTACAATATAGAGG+AGG - chr2_1:37047786-37047805 None:intergenic 30.0%
ATTGTCCTATTAATGACTCT+TGG + chr2_1:37047824-37047843 Msa0206940:intron 30.0%
GCGACTAAATTACATATTGA+TGG - chr2_1:37047861-37047880 None:intergenic 30.0%
! TTTCTTGGAAAGTGTAAATG+AGG + chr2_1:37047911-37047930 Msa0206940:intron 30.0%
! TTCTTGGAAAGTGTAAATGA+GGG + chr2_1:37047912-37047931 Msa0206940:intron 30.0%
!! ATCCATGCTTTTTAATAGCT+AGG + chr2_1:37048005-37048024 Msa0206940:intron 30.0%
! CAATTTTCATTACAGGCTAT+TGG + chr2_1:37048099-37048118 Msa0206940:intron 30.0%
TAAATGACTTTACAACAGAG+TGG + chr2_1:37048148-37048167 Msa0206940:CDS 30.0%
AAATGACTTTACAACAGAGT+GGG + chr2_1:37048149-37048168 Msa0206940:CDS 30.0%
TCTGTTATCTTATTGACACT+TGG + chr2_1:37048180-37048199 Msa0206940:CDS 30.0%
AAATTACTGACCTGAAACTT+GGG + chr2_1:37048232-37048251 Msa0206940:CDS 30.0%
GTTTGTGAATATCAAAAGAG+AGG - chr2_1:37048265-37048284 None:intergenic 30.0%
TTTAATGATGCCAACTATGT+CGG + chr2_1:37048333-37048352 Msa0206940:CDS 30.0%
ATCTACATTGTCAAATTTGG+AGG - chr2_1:37048695-37048714 None:intergenic 30.0%
! GATGTTAAACCTTTTGCATT+TGG + chr2_1:37048926-37048945 Msa0206940:intron 30.0%
TGGAAGAGACAAAAGTTTAA+GGG - chr2_1:37049062-37049081 None:intergenic 30.0%
ATGGAAGAGACAAAAGTTTA+AGG - chr2_1:37049063-37049082 None:intergenic 30.0%
AGTGTAATAGTAGTTGAAGA+AGG - chr2_1:37049163-37049182 None:intergenic 30.0%
! TTCCTTACTGATTAATATGC+TGG + chr2_1:37049326-37049345 Msa0206940:intron 30.0%
AACCAGCATATTAATCAGTA+AGG - chr2_1:37049331-37049350 None:intergenic 30.0%
! TATGCTGGTTAAAGAACTAT+TGG + chr2_1:37049341-37049360 Msa0206940:intron 30.0%
!!! TTCAACATTTTTGGCAATCT+TGG + chr2_1:37049438-37049457 Msa0206940:CDS 30.0%
!! CTCTATGTTTTTGTACTTCT+GGG - chr2_1:37049593-37049612 None:intergenic 30.0%
!! ACTCTATGTTTTTGTACTTC+TGG - chr2_1:37049594-37049613 None:intergenic 30.0%
GGAAACAACCAATCATTTAA+TGG - chr2_1:37049640-37049659 None:intergenic 30.0%
TGCTCTGCAAAATTATATAC+AGG - chr2_1:37049697-37049716 None:intergenic 30.0%
GAACTAGGTTTATCAATCAA+TGG + chr2_1:37049783-37049802 Msa0206940:three_prime_UTR 30.0%
AGAATGTAGAACGTCAAAAT+AGG - chr2_1:37049872-37049891 None:intergenic 30.0%
CAAGATCTTCAGAAAAGAGA+AGG + chr2_1:37047179-37047198 Msa0206940:CDS 35.0%
! AAGGTATCACACCGAATTAT+AGG + chr2_1:37047420-37047439 Msa0206940:intron 35.0%
TATATGCCTTCAACCTCAAA+GGG - chr2_1:37047460-37047479 None:intergenic 35.0%
ATATATGCCTTCAACCTCAA+AGG - chr2_1:37047461-37047480 None:intergenic 35.0%
!! TGCTTTCAAGTTCTCTTTCT+TGG + chr2_1:37047896-37047915 Msa0206940:intron 35.0%
TGTGCACTAGGAAAACATAT+CGG + chr2_1:37047967-37047986 Msa0206940:intron 35.0%
GACCTAGCTATTAAAAAGCA+TGG - chr2_1:37048010-37048029 None:intergenic 35.0%
CAAATTACTGACCTGAAACT+TGG + chr2_1:37048231-37048250 Msa0206940:CDS 35.0%
AGTTGGAATTGTCTATGTTC+AGG + chr2_1:37048392-37048411 Msa0206940:CDS 35.0%
AATCTAGACGCGTAGTTAAT+AGG - chr2_1:37048518-37048537 None:intergenic 35.0%
AAAGATGAGAGGACCTTAAA+CGG - chr2_1:37048581-37048600 None:intergenic 35.0%
!! AAAGGTTGGTAAAAGATGAG+AGG - chr2_1:37048592-37048611 None:intergenic 35.0%
!!! TGTAGATGTTCTATTTTGGC+AGG + chr2_1:37048708-37048727 Msa0206940:intron 35.0%
ATTGTTCTGCTTGAAATGTC+TGG + chr2_1:37048892-37048911 Msa0206940:intron 35.0%
AAGGTTTAACATCGAATGTC+AGG - chr2_1:37048919-37048938 None:intergenic 35.0%
! GTTGCAATACATTCTGGAAA+TGG + chr2_1:37049017-37049036 Msa0206940:intron 35.0%
CTATTACACTTTCCTACAAC+TGG + chr2_1:37049173-37049192 Msa0206940:CDS 35.0%
TCTTAGTCGAATATCAGTTC+TGG + chr2_1:37049414-37049433 Msa0206940:CDS 35.0%
CTTAGTCGAATATCAGTTCT+GGG + chr2_1:37049415-37049434 Msa0206940:CDS 35.0%
!!! AGTTCTGGGTTCAACATTTT+TGG + chr2_1:37049429-37049448 Msa0206940:CDS 35.0%
GTTCTATGCAAACAACTGAA+TGG - chr2_1:37049767-37049786 None:intergenic 35.0%
TCAGTTGTTTGCATAGAACT+AGG + chr2_1:37049768-37049787 Msa0206940:three_prime_UTR 35.0%
TCTTCAGAAAAGAGAAGGTG+AGG + chr2_1:37047184-37047203 Msa0206940:CDS 40.0%
TACACTCGATATGCTTCTGT+TGG + chr2_1:37047230-37047249 Msa0206940:CDS 40.0%
!! AATTAGCCCTTTGAGGTTGA+AGG + chr2_1:37047451-37047470 Msa0206940:intron 40.0%
AGGCATATATGCAGGTTCAT+AGG + chr2_1:37047471-37047490 Msa0206940:intron 40.0%
TATATGCAGGTTCATAGGTG+TGG + chr2_1:37047476-37047495 Msa0206940:intron 40.0%
TCACCAGTGCTAGTATGTTT+AGG + chr2_1:37047637-37047656 Msa0206940:intron 40.0%
CTTCCTAAACATACTAGCAC+TGG - chr2_1:37047643-37047662 None:intergenic 40.0%
CAGTGCTAGTATGTTTAGGA+AGG + chr2_1:37047641-37047660 Msa0206940:intron 40.0%
TGTGATGTAGTGTTAAGTGC+TGG - chr2_1:37048032-37048051 None:intergenic 40.0%
TCCGTGATTACAACGTACAT+TGG + chr2_1:37048204-37048223 Msa0206940:CDS 40.0%
CCCAATGTACGTTGTAATCA+CGG - chr2_1:37048208-37048227 None:intergenic 40.0%
CCGTGATTACAACGTACATT+GGG + chr2_1:37048205-37048224 Msa0206940:CDS 40.0%
CGTGATTACAACGTACATTG+GGG + chr2_1:37048206-37048225 Msa0206940:CDS 40.0%
! TCTTACTTGCCAGCTTCTTT+TGG + chr2_1:37048291-37048310 Msa0206940:CDS 40.0%
CAGAAAGAAGGACACAATGA+TGG - chr2_1:37048367-37048386 None:intergenic 40.0%
CATTGTGTCCTTCTTTCTGT+TGG + chr2_1:37048368-37048387 Msa0206940:CDS 40.0%
!! TCCTTCTTTCTGTTGGTAGT+TGG + chr2_1:37048375-37048394 Msa0206940:CDS 40.0%
TCCAACTACCAACAGAAAGA+AGG - chr2_1:37048379-37048398 None:intergenic 40.0%
TTGCAACACTGATGATTCTC+AGG + chr2_1:37048475-37048494 Msa0206940:intron 40.0%
TCTAGATTCACCAGCAAAAG+CGG + chr2_1:37048530-37048549 Msa0206940:CDS 40.0%
ATCTGCTTACCTACCGTTTA+AGG + chr2_1:37048565-37048584 Msa0206940:CDS 40.0%
! TTTTGGCAGGTCAATAGTTC+TGG + chr2_1:37048721-37048740 Msa0206940:intron 40.0%
TTTGGCAGGTCAATAGTTCT+GGG + chr2_1:37048722-37048741 Msa0206940:intron 40.0%
!! GTATGTGGTTGGTTTATCTC+CGG + chr2_1:37048854-37048873 Msa0206940:intron 40.0%
!! TATGTGGTTGGTTTATCTCC+GGG + chr2_1:37048855-37048874 Msa0206940:intron 40.0%
! CATAGAGCACCAAATGCAAA+AGG - chr2_1:37048938-37048957 None:intergenic 40.0%
CCAGAATGTATTGCAACAGA+AGG - chr2_1:37049014-37049033 None:intergenic 40.0%
CCTTCTGTTGCAATACATTC+TGG + chr2_1:37049011-37049030 Msa0206940:intron 40.0%
AATTGTTCGCTCACATCATC+TGG - chr2_1:37049201-37049220 None:intergenic 40.0%
AGCGAACAATTGAAACGTCA+AGG + chr2_1:37049210-37049229 Msa0206940:CDS 40.0%
TGTTGGATTCGCCATTGTAC+AGG + chr2_1:37047247-37047266 Msa0206940:CDS 45.0%
GTCGTTCAATTAGCCCTTTG+AGG + chr2_1:37047444-37047463 Msa0206940:intron 45.0%
! GAGGTTGAAGGCATATATGC+AGG + chr2_1:37047463-37047482 Msa0206940:intron 45.0%
!! ACATACTAGCACTGGTGAGA+CGG - chr2_1:37047635-37047654 None:intergenic 45.0%
! GTTTTCCTAGTGCACAACAG+TGG - chr2_1:37047963-37047982 None:intergenic 45.0%
AGTCATTTACATAGGGACGC+AGG - chr2_1:37048137-37048156 None:intergenic 45.0%
ACTGACCTGAAACTTGGGAA+TGG + chr2_1:37048237-37048256 Msa0206940:CDS 45.0%
AGGTTCCATTCCCAAGTTTC+AGG - chr2_1:37048245-37048264 None:intergenic 45.0%
! ACTTGCCAGCTTCTTTTGGT+CGG + chr2_1:37048295-37048314 Msa0206940:CDS 45.0%
AATGTCCGACCAAAAGAAGC+TGG - chr2_1:37048303-37048322 None:intergenic 45.0%
GGTAACAAGTCCGACATAGT+TGG - chr2_1:37048346-37048365 None:intergenic 45.0%
ATGAGAGGACCTTAAACGGT+AGG - chr2_1:37048577-37048596 None:intergenic 45.0%
! TTGGCAGGTCAATAGTTCTG+GGG + chr2_1:37048723-37048742 Msa0206940:intron 45.0%
! ACATCATCGTTAGCTCTTCC+TGG + chr2_1:37048766-37048785 Msa0206940:CDS 45.0%
! GTGAAACGTGCTAAAGTACC+AGG - chr2_1:37048787-37048806 None:intergenic 45.0%
GGTACTTTAGCACGTTTCAC+TGG + chr2_1:37048787-37048806 Msa0206940:CDS 45.0%
! CTTTGAATCCAGGAGGTATG+TGG + chr2_1:37048839-37048858 Msa0206940:intron 45.0%
TAAACCAACCACATACCTCC+TGG - chr2_1:37048850-37048869 None:intergenic 45.0%
CATCATCTGGATCCAGTTGT+AGG - chr2_1:37049188-37049207 None:intergenic 45.0%
TCAATTCCACTTGTCAGACC+AGG + chr2_1:37049237-37049256 Msa0206940:CDS 45.0%
AATGTAGCTGTACTTCTGCC+TGG - chr2_1:37049258-37049277 None:intergenic 45.0%
! TAAGGAAATCAAGGAGCGTG+GGG - chr2_1:37049313-37049332 None:intergenic 45.0%
! GTAAGGAAATCAAGGAGCGT+GGG - chr2_1:37049314-37049333 None:intergenic 45.0%
AGTAAGGAAATCAAGGAGCG+TGG - chr2_1:37049315-37049334 None:intergenic 45.0%
!! TTTTTGGCAATCTTGGCTGC+TGG + chr2_1:37049445-37049464 Msa0206940:CDS 45.0%
TAGATGTTCCAGCAAATCCC+CGG - chr2_1:37049510-37049529 None:intergenic 45.0%
CAGAAAAGAGAAGGTGAGGC+TGG + chr2_1:37047188-37047207 Msa0206940:CDS 50.0%
CTCAACCACTGTTGTGCACT+AGG + chr2_1:37047955-37047974 Msa0206940:intron 50.0%
AGGGACGCAGGAAAAGAACT+TGG - chr2_1:37048125-37048144 None:intergenic 50.0%
AGATTCACCAGCAAAAGCGG+TGG + chr2_1:37048533-37048552 Msa0206940:CDS 50.0%
!! TTCAAGTCCACCGCTTTTGC+TGG - chr2_1:37048543-37048562 None:intergenic 50.0%
!! GCTGCAGTAGCTTTGAATCC+AGG + chr2_1:37048829-37048848 Msa0206940:CDS 50.0%
!! GCAGTAGCTTTGAATCCAGG+AGG + chr2_1:37048832-37048851 Msa0206940:CDS 50.0%
! GAATCCAGGAGGTATGTGGT+TGG + chr2_1:37048843-37048862 Msa0206940:intron 50.0%
GCAGTCTGCTCAACAATTGC+AGG - chr2_1:37049472-37049491 None:intergenic 50.0%
CTGCACACTTGACTGCATTC+CGG + chr2_1:37049488-37049507 Msa0206940:CDS 50.0%
TGCACACTTGACTGCATTCC+GGG + chr2_1:37049489-37049508 Msa0206940:CDS 50.0%
GATATAAAAGGGGCAAGCCG+TGG + chr2_1:37049814-37049833 Msa0206940:three_prime_UTR 50.0%
CAAACAACTGCCACATCACC+CGG - chr2_1:37049847-37049866 None:intergenic 50.0%
CTTCTGCCTGGTCTGACAAG+TGG - chr2_1:37049246-37049265 None:intergenic 55.0%
GCACACTTGACTGCATTCCG+GGG + chr2_1:37049490-37049509 Msa0206940:CDS 55.0%
ACTGCATTCCGGGGATTTGC+TGG + chr2_1:37049499-37049518 Msa0206940:CDS 55.0%
GGAGCGTGGGGCTAGAGAGA+AGG - chr2_1:37049301-37049320 None:intergenic 65.0%
AAGGGGCAAGCCGTGGCTCG+TGG + chr2_1:37049821-37049840 Msa0206940:three_prime_UTR 70.0%
CATCACCCGGCCACGAGCCA+CGG - chr2_1:37049834-37049853 None:intergenic 70.0%
TGGCTCGTGGCCGGGTGATG+TGG + chr2_1:37049834-37049853 Msa0206940:three_prime_UTR 70.0%
GGCAAGCCGTGGCTCGTGGC+CGG + chr2_1:37049825-37049844 Msa0206940:three_prime_UTR 75.0%
GCAAGCCGTGGCTCGTGGCC+GGG + chr2_1:37049826-37049845 Msa0206940:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 37047176 37049918 37047176 ID=Msa0206940;Name=Msa0206940
chr2_1 mRNA 37047176 37049918 37047176 ID=Msa0206940-mRNA-1;Parent=Msa0206940;Name=Msa0206940-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.8|0.66|1|1|1|6|282|331
chr2_1 exon 37047176 37047268 37047176 ID=Msa0206940-mRNA-1:exon:11997;Parent=Msa0206940-mRNA-1
chr2_1 exon 37048114 37048413 37048114 ID=Msa0206940-mRNA-1:exon:11998;Parent=Msa0206940-mRNA-1
chr2_1 exon 37048497 37048586 37048497 ID=Msa0206940-mRNA-1:exon:11999;Parent=Msa0206940-mRNA-1
chr2_1 exon 37048730 37048853 37048730 ID=Msa0206940-mRNA-1:exon:12000;Parent=Msa0206940-mRNA-1
chr2_1 exon 37049124 37049287 37049124 ID=Msa0206940-mRNA-1:exon:12001;Parent=Msa0206940-mRNA-1
chr2_1 exon 37049412 37049918 37049412 ID=Msa0206940-mRNA-1:exon:12002;Parent=Msa0206940-mRNA-1
chr2_1 CDS 37047176 37047268 37047176 ID=Msa0206940-mRNA-1:cds;Parent=Msa0206940-mRNA-1
chr2_1 CDS 37048114 37048413 37048114 ID=Msa0206940-mRNA-1:cds;Parent=Msa0206940-mRNA-1
chr2_1 CDS 37048497 37048586 37048497 ID=Msa0206940-mRNA-1:cds;Parent=Msa0206940-mRNA-1
chr2_1 CDS 37048730 37048853 37048730 ID=Msa0206940-mRNA-1:cds;Parent=Msa0206940-mRNA-1
chr2_1 CDS 37049124 37049287 37049124 ID=Msa0206940-mRNA-1:cds;Parent=Msa0206940-mRNA-1
chr2_1 CDS 37049412 37049636 37049412 ID=Msa0206940-mRNA-1:cds;Parent=Msa0206940-mRNA-1
chr2_1 three_prime_UTR 37049637 37049918 37049637 ID=Msa0206940-mRNA-1:three_prime_utr;Parent=Msa0206940-mRNA-1
Gene Sequence

>Msa0206940

TTGCAAGATCTTCAGAAAAGAGAAGGTGAGGCTGGAAGAAAGAAAATTCTTCAGTACACTCGATATGCTTCTGTTGGATTCGCCATTGTACAGGCTATTGGCCAAGTTCTTTTCCTGCGTCCCTATGTAAATGACTTTACAACAGAGTGGGCTCTTACTTCTGTTATCTTATTGACACTTGGCTCCGTGATTACAACGTACATTGGGGAGCAAATTACTGACCTGAAACTTGGGAATGGAACCTCTCTTTTGATATTCACAAACATTATCTCTTACTTGCCAGCTTCTTTTGGTCGGACATTTGCACAAGCATTTAATGATGCCAACTATGTCGGACTTGTTACCATCATTGTGTCCTTCTTTCTGTTGGTAGTTGGAATTGTCTATGTTCAGGAAGCAGAGAGAAAAATTCCTATTAACTACGCGTCTAGATTCACCAGCAAAAGCGGTGGACTTGAAAAATCTGCTTACCTACCGTTTAAGGTCAATAGTTCTGGGGTAATGCCTATCATATTTTCTACATCATCGTTAGCTCTTCCTGGTACTTTAGCACGTTTCACTGGTTTAAGTGCACTAAAAAATGCTGCAGTAGCTTTGAATCCAGGAGGCTCCTTCTATCTTCCATTTAACATACTTTTGATAGCCTTCTTCAACTACTATTACACTTTCCTACAACTGGATCCAGATGATGTGAGCGAACAATTGAAACGTCAAGGTGCTTCAATTCCACTTGTCAGACCAGGCAGAAGTACAGCTACATTTATTAAAACAGTTCTTAGTCGAATATCAGTTCTGGGTTCAACATTTTTGGCAATCTTGGCTGCTGGACCTGCAATTGTTGAGCAGACTGCACACTTGACTGCATTCCGGGGATTTGCTGGAACATCTATTCTTATTCTTGTTGGTTGTGCAACAGACACTGCTAGAAAAGTTCGAGCTGAGATTATATCCCAGAAGTACAAAAACATAGAGTTATATGACTTTGACAAGTATTGA

Protein sequence

>Msa0206940

LQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLFLRPYVNDFTTEWALTSVILLTLGSVITTYIGEQITDLKLGNGTSLLIFTNIISYLPASFGRTFAQAFNDANYVGLVTIIVSFFLLVVGIVYVQEAERKIPINYASRFTSKSGGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLSALKNAAVALNPGGSFYLPFNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGRSTATFIKTVLSRISVLGSTFLAILAAGPAIVEQTAHLTAFRGFAGTSILILVGCATDTARKVRAEIISQKYKNIELYDFDKY*