AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0334020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334020 MtrunA17_Chr2g0318371 92.531 241 16 1 1 241 1 239 2.08e-155 431
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334020 AT4G27390.1 67.143 140 44 2 104 241 96 235 3.66e-65 202

Find 77 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTAGCACTGCTAGGATTT+TGG 0.190883 2_4:+52096884 Msa0334020:CDS
AGTAAACTTTGGGTCTAAAT+TGG 0.212593 2_4:-52096676 None:intergenic
GGAAATCTTGCTCTGGCTGC+TGG 0.232538 2_4:+52096906 Msa0334020:CDS
GACATGGGGAATATTGTATA+TGG 0.240633 2_4:-52096570 None:intergenic
GTAAAGAATAATAAAGGATT+TGG 0.246820 2_4:+52096828 Msa0334020:CDS
AACCACAGCTTACCAGAAAA+AGG 0.260992 2_4:-52098340 None:intergenic
TGGCAAGTGTTCGTTGGATT+TGG 0.278594 2_4:+52096369 Msa0334020:five_prime_UTR
TGAAAATCATTTCCACAGTT+TGG 0.296271 2_4:-52098156 None:intergenic
ATACCACACCTTTATTATCT+TGG 0.307638 2_4:+52099728 Msa0334020:three_prime_UTR
TTGATGCTATTGTTTCCATT+TGG 0.312053 2_4:+52096970 Msa0334020:CDS
TGTCTTGTATATGTTATCAT+TGG 0.317658 2_4:-52096634 None:intergenic
AAAGGATTTGGATTCAATAA+TGG 0.318678 2_4:+52096840 Msa0334020:CDS
TCAAACCAATCTACAACATT+TGG 0.326629 2_4:+52098506 Msa0334020:CDS
TGATGCTATTGTTTCCATTT+GGG 0.332028 2_4:+52096971 Msa0334020:CDS
TGGGTGTATGTGGGAAGAAA+AGG 0.347214 2_4:+52096776 Msa0334020:CDS
TTTATGGCAGACAAGGATTC+TGG 0.347799 2_4:+52098674 Msa0334020:intron
AGAAGATTGAAGATACGTTT+TGG 0.349225 2_4:-52099755 None:intergenic
TAGGTCTTGGTGCTTTCCTC+TGG 0.355550 2_4:+52097968 Msa0334020:CDS
GTAAAATCTTAGTGTACTAA+TGG 0.358748 2_4:-52096542 None:intergenic
TTCAATAATGGTGGAGGTGG+TGG 0.377303 2_4:+52096852 Msa0334020:CDS
AAATTCTCGTTCAGTTAAAC+AGG 0.393778 2_4:+52099541 Msa0334020:three_prime_UTR
CTGCAATTCTTCATTTAAAG+TGG 0.395830 2_4:-52098296 None:intergenic
CTCTCAATGACTGGACAACT+TGG 0.412515 2_4:+52096939 Msa0334020:CDS
GGTGCTTTCCTCTGGTGGGC+AGG 0.422821 2_4:+52097976 Msa0334020:CDS
AGATGAAAAGAAGTAAACTT+TGG 0.428569 2_4:-52096687 None:intergenic
GTCTTGGTGCTTTCCTCTGG+TGG 0.432604 2_4:+52097971 Msa0334020:CDS
GATGAAAAGAAGTAAACTTT+GGG 0.436479 2_4:-52096686 None:intergenic
GGGTGTATGTGGGAAGAAAA+GGG 0.437123 2_4:+52096777 Msa0334020:CDS
TGTACTAATGGAGTTAGAAA+AGG 0.438306 2_4:-52096530 None:intergenic
GAAATCTTGCTCTGGCTGCT+GGG 0.441542 2_4:+52096907 Msa0334020:CDS
TTGGTAAACCAAGATAATAA+AGG 0.441920 2_4:-52099736 None:intergenic
GTCTTGTATATGTTATCATT+GGG 0.442530 2_4:-52096633 None:intergenic
CAATGACTGGACAACTTGGC+TGG 0.453870 2_4:+52096943 Msa0334020:CDS
CTTGTCCAAATGTTGTAGAT+TGG 0.454288 2_4:-52098511 None:intergenic
TATTCCCACACAGATCTTTG+CGG 0.454686 2_4:+52097930 Msa0334020:intron
GGGAAGAAAAGGGGTGCAAG+AGG 0.465614 2_4:+52096787 Msa0334020:CDS
TGTGTCAAATATCATCTTTG+AGG 0.485147 2_4:-52096451 None:intergenic
ACATGGGGAATATTGTATAT+GGG 0.494818 2_4:-52096569 None:intergenic
TCTTGGTGCTTTCCTCTGGT+GGG 0.507937 2_4:+52097972 Msa0334020:CDS
GGAGGTGGTGGAAGAGATGA+TGG 0.511206 2_4:+52096864 Msa0334020:CDS
GAATTGTACAAGAGTGGACA+TGG 0.518570 2_4:-52096586 None:intergenic
AGTTGAGAGCATGCAGGGAG+AGG 0.519424 2_4:+52096721 Msa0334020:CDS
GGAAGAAAAGGGGTGCAAGA+GGG 0.529776 2_4:+52096788 Msa0334020:CDS
TTAGTACCGATAGTAGGTCT+TGG 0.531029 2_4:+52097955 Msa0334020:CDS
TCGTTCAGTTAAACAGGCCG+TGG 0.531598 2_4:+52099547 Msa0334020:three_prime_UTR
TTGACTTATCTCTCAATGAC+TGG 0.532435 2_4:+52096930 Msa0334020:CDS
GTGCAAGAGGGAAAAGAGAG+TGG 0.534510 2_4:+52096800 Msa0334020:CDS
GGATTTGGATTCAATAATGG+TGG 0.539358 2_4:+52096843 Msa0334020:CDS
GTTTCAAGTTGAGAGCATGC+AGG 0.540331 2_4:+52096715 Msa0334020:CDS
TAAATTGGAGAAAGAAAAGG+TGG 0.540736 2_4:-52096661 None:intergenic
CCAACGAACACTTGCCACGT+TGG 0.541691 2_4:-52096363 None:intergenic
GGATTCAATAATGGTGGAGG+TGG 0.547149 2_4:+52096849 Msa0334020:CDS
CCAACGTGGCAAGTGTTCGT+TGG 0.553138 2_4:+52096363 Msa0334020:five_prime_UTR
TAATGTATTCTAGAGAGGAT+AGG 0.561442 2_4:+52099640 Msa0334020:three_prime_UTR
TTTGGATTCAATAATGGTGG+AGG 0.562087 2_4:+52096846 Msa0334020:CDS
GTCTAAATTGGAGAAAGAAA+AGG 0.563509 2_4:-52096664 None:intergenic
ACTCGTTGCGTCTTAAGCAC+CGG 0.567742 2_4:-52099580 None:intergenic
GATAGAGAATTGTACAAGAG+TGG 0.568164 2_4:-52096592 None:intergenic
GCGGTGTTAGTACCGATAGT+AGG 0.572577 2_4:+52097949 Msa0334020:CDS
GGTTTAGACATGTCGTCGAA+TGG 0.578641 2_4:-52096509 None:intergenic
TTGGAAAGAACAACATGTGA+AGG 0.580650 2_4:+52096388 Msa0334020:five_prime_UTR
TTTCAAGTTGAGAGCATGCA+GGG 0.582105 2_4:+52096716 Msa0334020:CDS
GAGATGATGGTAGCACTGCT+AGG 0.582418 2_4:+52096877 Msa0334020:CDS
CAGATTAATGTATTCTAGAG+AGG 0.585509 2_4:+52099635 Msa0334020:three_prime_UTR
GGTGTATGTGGGAAGAAAAG+GGG 0.588360 2_4:+52096778 Msa0334020:CDS
TGATGGTAATGAGTTTGTCA+AGG 0.603814 2_4:+52098469 Msa0334020:CDS
GCACCGGAAAATGCAAGCCA+CGG 0.623612 2_4:-52099564 None:intergenic
TATATGCAGTGTCCAAACTG+TGG 0.630144 2_4:+52098144 Msa0334020:intron
AAACCAAGATAATAAAGGTG+TGG 0.634068 2_4:-52099731 None:intergenic
GCAGGTCGAGATATAATGAA+AGG 0.637002 2_4:+52097994 Msa0334020:CDS
TATCTCGACCTGCCCACCAG+AGG 0.654751 2_4:-52097984 None:intergenic
GCTAATTATACTTACTAACA+TGG 0.656358 2_4:-52098758 None:intergenic
AATTGTACAAGAGTGGACAT+GGG 0.658045 2_4:-52096585 None:intergenic
ATTGTACAAGAGTGGACATG+GGG 0.667546 2_4:-52096584 None:intergenic
AAAGCACCAAGACCTACTAT+CGG 0.670888 2_4:-52097961 None:intergenic
AAATTGGAGAAAGAAAAGGT+GGG 0.722634 2_4:-52096660 None:intergenic
AAGGGTCCTTAAAACCAACG+TGG 0.803231 2_4:+52096349 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCGTTAAATTTATTTTAAT+GGG - chr2_4:52097170-52097189 None:intergenic 10.0%
!!! TATCGTTAAATTTATTTTAA+TGG - chr2_4:52097171-52097190 None:intergenic 10.0%
!! TATATAAATTCTACATTATT+AGG + chr2_4:52097713-52097732 Msa0334020:intron 10.0%
!!! GTTTTAGTAAAGAATAATAA+AGG + chr2_4:52096822-52096841 Msa0334020:CDS 15.0%
!!! TCGTTAAATTTATTTTAATG+GGG - chr2_4:52097169-52097188 None:intergenic 15.0%
!! AAAAATTATTTACATTGAAC+AGG - chr2_4:52097797-52097816 None:intergenic 15.0%
!! AATAAAGAATAAAGAGATAA+GGG - chr2_4:52098613-52098632 None:intergenic 15.0%
!! TAATAAAGAATAAAGAGATA+AGG - chr2_4:52098614-52098633 None:intergenic 15.0%
!!! AGATTTGTATTTAATTTTTC+AGG + chr2_4:52099502-52099521 Msa0334020:intron 15.0%
!!! GATTTGTATTTAATTTTTCA+GGG + chr2_4:52099503-52099522 Msa0334020:intron 15.0%
!! GTAAAGAATAATAAAGGATT+TGG + chr2_4:52096828-52096847 Msa0334020:CDS 20.0%
!! GTTAAACCATTATAAATACA+AGG + chr2_4:52097064-52097083 Msa0334020:intron 20.0%
!!! TCTTTAAAGTGAATAAGTAA+AGG - chr2_4:52097200-52097219 None:intergenic 20.0%
!!! TTTCTTAAATTATGTTTTCC+CGG + chr2_4:52097228-52097247 Msa0334020:intron 20.0%
!!! GAATTTACATGTATAAGTTT+TGG - chr2_4:52097879-52097898 None:intergenic 20.0%
!! TTATACGTATAAAATAACGA+TGG - chr2_4:52098261-52098280 None:intergenic 20.0%
!!! TTTTTTAAACGAAATACTGA+TGG - chr2_4:52098393-52098412 None:intergenic 20.0%
!!! TTTATTTTGATATCAGTTGA+TGG + chr2_4:52098452-52098471 Msa0334020:intron 20.0%
!!! AATATATTTGCTGAATACTA+AGG - chr2_4:52099421-52099440 None:intergenic 20.0%
!! ATCTCAATAAAACTATTTAG+TGG - chr2_4:52099486-52099505 None:intergenic 20.0%
!! TTACAAAAAACAATACTTGT+GGG + chr2_4:52099785-52099804 Msa0334020:three_prime_UTR 20.0%
! GTAAAATCTTAGTGTACTAA+TGG - chr2_4:52096545-52096564 None:intergenic 25.0%
! GTCTTGTATATGTTATCATT+GGG - chr2_4:52096636-52096655 None:intergenic 25.0%
! TGTCTTGTATATGTTATCAT+TGG - chr2_4:52096637-52096656 None:intergenic 25.0%
! GATGAAAAGAAGTAAACTTT+GGG - chr2_4:52096689-52096708 None:intergenic 25.0%
! AGATGAAAAGAAGTAAACTT+TGG - chr2_4:52096690-52096709 None:intergenic 25.0%
!! AAAGTTTACTTCTTTTCATC+TGG + chr2_4:52096689-52096708 Msa0334020:CDS 25.0%
!! AAGTTTACTTCTTTTCATCT+GGG + chr2_4:52096690-52096709 Msa0334020:CDS 25.0%
! TATTTAAAAATGGGTGTATG+TGG + chr2_4:52096766-52096785 Msa0334020:CDS 25.0%
! ATTTAAAAATGGGTGTATGT+GGG + chr2_4:52096767-52096786 Msa0334020:CDS 25.0%
! AAAGGATTTGGATTCAATAA+TGG + chr2_4:52096840-52096859 Msa0334020:CDS 25.0%
! AAAAGGTAAACCTATTTGAT+TGG - chr2_4:52097508-52097527 None:intergenic 25.0%
! ATTCTACAAGGAGTTTAAAA+AGG - chr2_4:52097525-52097544 None:intergenic 25.0%
! TAGATAGGTTATGTGAAATT+TGG - chr2_4:52097598-52097617 None:intergenic 25.0%
! TAGAAGACATTATCAACTAA+GGG - chr2_4:52097839-52097858 None:intergenic 25.0%
!!! TTTACATGTATAAGTTTTGG+AGG - chr2_4:52097876-52097895 None:intergenic 25.0%
!!! CTTTTACACTTTTTAAACGA+TGG + chr2_4:52098068-52098087 Msa0334020:intron 25.0%
!! AATGTACTAATAACTTGTGA+AGG - chr2_4:52098571-52098590 None:intergenic 25.0%
! GCTAATTATACTTACTAACA+TGG - chr2_4:52098761-52098780 None:intergenic 25.0%
! AACCATACACAATTACATAT+TGG - chr2_4:52098808-52098827 None:intergenic 25.0%
! CTTCAATATTATGTTTGCAT+AGG - chr2_4:52098909-52098928 None:intergenic 25.0%
! ATGCAAACATAATATTGAAG+AGG + chr2_4:52098909-52098928 Msa0334020:intron 25.0%
! CTTCAATATTATGTTTGCAT+AGG - chr2_4:52098909-52098928 None:intergenic 25.0%
! ATGCAAACATAATATTGAAG+AGG + chr2_4:52098909-52098928 Msa0334020:intron 25.0%
! TGAACAAATACTTGAAAACA+AGG + chr2_4:52099048-52099067 Msa0334020:intron 25.0%
!! TTCTTCATAACTGATTTCAT+AGG - chr2_4:52099270-52099289 None:intergenic 25.0%
! AATGGTTAGGTTAATTATAC+AGG - chr2_4:52099372-52099391 None:intergenic 25.0%
! GTATTCAGCAAATATATTGT+TGG + chr2_4:52099423-52099442 Msa0334020:intron 25.0%
! TTGGTAAACCAAGATAATAA+AGG - chr2_4:52099739-52099758 None:intergenic 25.0%
! GTTACAAAAAACAATACTTG+TGG + chr2_4:52099784-52099803 Msa0334020:three_prime_UTR 25.0%
TGTGTCAAATATCATCTTTG+AGG - chr2_4:52096454-52096473 None:intergenic 30.0%
TGTACTAATGGAGTTAGAAA+AGG - chr2_4:52096533-52096552 None:intergenic 30.0%
ACATGGGGAATATTGTATAT+GGG - chr2_4:52096572-52096591 None:intergenic 30.0%
AAATTGGAGAAAGAAAAGGT+GGG - chr2_4:52096663-52096682 None:intergenic 30.0%
TAAATTGGAGAAAGAAAAGG+TGG - chr2_4:52096664-52096683 None:intergenic 30.0%
GTCTAAATTGGAGAAAGAAA+AGG - chr2_4:52096667-52096686 None:intergenic 30.0%
AGTAAACTTTGGGTCTAAAT+TGG - chr2_4:52096679-52096698 None:intergenic 30.0%
TTGATGCTATTGTTTCCATT+TGG + chr2_4:52096970-52096989 Msa0334020:CDS 30.0%
TGATGCTATTGTTTCCATTT+GGG + chr2_4:52096971-52096990 Msa0334020:CDS 30.0%
CACACACCTTGTATTTATAA+TGG - chr2_4:52097073-52097092 None:intergenic 30.0%
! ATGTGTAAAGCATTTACAAG+AGG - chr2_4:52097260-52097279 None:intergenic 30.0%
GTTGCTACCTCTTAAAATTT+AGG - chr2_4:52097391-52097410 None:intergenic 30.0%
CAATTATGAGCCAATCAAAT+AGG + chr2_4:52097495-52097514 Msa0334020:intron 30.0%
ATTAGAAGAATGTTGCAATC+AGG - chr2_4:52097558-52097577 None:intergenic 30.0%
TGTTTCTTGCTTCTTTAGAT+AGG - chr2_4:52097613-52097632 None:intergenic 30.0%
ACTGAATAAAGATTAAGCGA+AGG + chr2_4:52097653-52097672 Msa0334020:intron 30.0%
CTACATTATTAGGCTATTTG+TGG + chr2_4:52097723-52097742 Msa0334020:intron 30.0%
CTAGAAGACATTATCAACTA+AGG - chr2_4:52097840-52097859 None:intergenic 30.0%
!!! ACGATGGATTATTTTTCTTG+TGG + chr2_4:52098084-52098103 Msa0334020:intron 30.0%
TGAAAATCATTTCCACAGTT+TGG - chr2_4:52098159-52098178 None:intergenic 30.0%
! AAACTGTGGAAATGATTTTC+AGG + chr2_4:52098158-52098177 Msa0334020:CDS 30.0%
CTGCAATTCTTCATTTAAAG+TGG - chr2_4:52098299-52098318 None:intergenic 30.0%
! TACTGATGGATGATAAAACA+CGG - chr2_4:52098379-52098398 None:intergenic 30.0%
!! GATTGGTTTGAAAAATTCAC+AGG - chr2_4:52098497-52098516 None:intergenic 30.0%
TCAAACCAATCTACAACATT+TGG + chr2_4:52098506-52098525 Msa0334020:CDS 30.0%
!! AATTTCTCGCGTTCTAAAAA+TGG + chr2_4:52098542-52098561 Msa0334020:CDS 30.0%
TTATCCCTTATCTTTGTTGA+TGG + chr2_4:52098631-52098650 Msa0334020:intron 30.0%
!! TCAATCTGCGTCTTTTATTT+CGG - chr2_4:52098720-52098739 None:intergenic 30.0%
TGCCAATATGTAATTGTGTA+TGG + chr2_4:52098803-52098822 Msa0334020:intron 30.0%
! TTGCAATTCAGTGAAAGTAT+TGG - chr2_4:52098834-52098853 None:intergenic 30.0%
TACTTGGAAATTAAGCCATT+AGG - chr2_4:52099223-52099242 None:intergenic 30.0%
CATAGGAAAATAGTTTCACT+TGG - chr2_4:52099253-52099272 None:intergenic 30.0%
GAAATCAGTTATGAAGAATC+TGG + chr2_4:52099272-52099291 Msa0334020:intron 30.0%
!! TATGAGTGCATTTTAGAGAT+TGG + chr2_4:52099314-52099333 Msa0334020:intron 30.0%
! AACATTGACTAGGATTCAAA+TGG - chr2_4:52099390-52099409 None:intergenic 30.0%
AAATTCTCGTTCAGTTAAAC+AGG + chr2_4:52099541-52099560 Msa0334020:three_prime_UTR 30.0%
! CAGATTAATGTATTCTAGAG+AGG + chr2_4:52099635-52099654 Msa0334020:three_prime_UTR 30.0%
! TAATGTATTCTAGAGAGGAT+AGG + chr2_4:52099640-52099659 Msa0334020:three_prime_UTR 30.0%
ATACCACACCTTTATTATCT+TGG + chr2_4:52099728-52099747 Msa0334020:three_prime_UTR 30.0%
AAACCAAGATAATAAAGGTG+TGG - chr2_4:52099734-52099753 None:intergenic 30.0%
! AGAAGATTGAAGATACGTTT+TGG - chr2_4:52099758-52099777 None:intergenic 30.0%
TTGGAAAGAACAACATGTGA+AGG + chr2_4:52096388-52096407 Msa0334020:five_prime_UTR 35.0%
GACATGGGGAATATTGTATA+TGG - chr2_4:52096573-52096592 None:intergenic 35.0%
AATTGTACAAGAGTGGACAT+GGG - chr2_4:52096588-52096607 None:intergenic 35.0%
GATAGAGAATTGTACAAGAG+TGG - chr2_4:52096595-52096614 None:intergenic 35.0%
! TTTACTTCTTTTCATCTGGG+TGG + chr2_4:52096693-52096712 Msa0334020:CDS 35.0%
GAGGCGCAGTATTTAAAAAT+GGG + chr2_4:52096757-52096776 Msa0334020:CDS 35.0%
GGATTTGGATTCAATAATGG+TGG + chr2_4:52096843-52096862 Msa0334020:CDS 35.0%
TTTGGATTCAATAATGGTGG+AGG + chr2_4:52096846-52096865 Msa0334020:CDS 35.0%
TTGACTTATCTCTCAATGAC+TGG + chr2_4:52096930-52096949 Msa0334020:CDS 35.0%
! TAATTAGTAAGCACTAGCCT+AGG - chr2_4:52097025-52097044 None:intergenic 35.0%
!! ATTTTAATGGGGCAACATCA+GGG - chr2_4:52097158-52097177 None:intergenic 35.0%
!!! TATTTTAATGGGGCAACATC+AGG - chr2_4:52097159-52097178 None:intergenic 35.0%
ATTTACAAGAGGCTAATTCC+GGG - chr2_4:52097249-52097268 None:intergenic 35.0%
CATTTACAAGAGGCTAATTC+CGG - chr2_4:52097250-52097269 None:intergenic 35.0%
GTAAATGCTTTACACATGCA+AGG + chr2_4:52097263-52097282 Msa0334020:intron 35.0%
TCTATGATAGGGTCATATGA+TGG + chr2_4:52097295-52097314 Msa0334020:intron 35.0%
!! CCTTACAAGTCAGTTTTGTA+CGG + chr2_4:52097350-52097369 Msa0334020:intron 35.0%
!! CTTACAAGTCAGTTTTGTAC+GGG + chr2_4:52097351-52097370 Msa0334020:intron 35.0%
! GGCTCAACCTAAATTTTAAG+AGG + chr2_4:52097381-52097400 Msa0334020:intron 35.0%
AGAATGTTGCAATCAGGATA+GGG - chr2_4:52097552-52097571 None:intergenic 35.0%
AAGAATGTTGCAATCAGGAT+AGG - chr2_4:52097553-52097572 None:intergenic 35.0%
!! ATATAATGAAAGGCACTGTG+AGG + chr2_4:52098004-52098023 Msa0334020:intron 35.0%
AAAAAGGTTGACCGCAAAAT+GGG - chr2_4:52098327-52098346 None:intergenic 35.0%
! TGATGGTAATGAGTTTGTCA+AGG + chr2_4:52098469-52098488 Msa0334020:CDS 35.0%
CTTGTCCAAATGTTGTAGAT+TGG - chr2_4:52098514-52098533 None:intergenic 35.0%
AGCACCATCAACAAAGATAA+GGG - chr2_4:52098638-52098657 None:intergenic 35.0%
CGAAACAGACATGAAATCTT+AGG + chr2_4:52099090-52099109 Msa0334020:intron 35.0%
! GTTGCTATTAAGAAAAGCAC+AGG - chr2_4:52099131-52099150 None:intergenic 35.0%
CTTATATAGCTCACTCCTAA+TGG + chr2_4:52099205-52099224 Msa0334020:intron 35.0%
TTCACTTGGTTCACATTACT+TGG - chr2_4:52099239-52099258 None:intergenic 35.0%
! AGTTATGAAGAATCTGGAAC+TGG + chr2_4:52099278-52099297 Msa0334020:intron 35.0%
TGACTAGGATTCAAATGGTT+AGG - chr2_4:52099385-52099404 None:intergenic 35.0%
ATTGTACAAGAGTGGACATG+GGG - chr2_4:52096587-52096606 None:intergenic 40.0%
GAATTGTACAAGAGTGGACA+TGG - chr2_4:52096589-52096608 None:intergenic 40.0%
!! TTTCAAGTTGAGAGCATGCA+GGG + chr2_4:52096716-52096735 Msa0334020:CDS 40.0%
! GGAGGCGCAGTATTTAAAAA+TGG + chr2_4:52096756-52096775 Msa0334020:CDS 40.0%
!! GATTTTGGGAAATCTTGCTC+TGG + chr2_4:52096899-52096918 Msa0334020:CDS 40.0%
! AGGCAAGGAATGTCTTTTTC+AGG - chr2_4:52097333-52097352 None:intergenic 40.0%
!! CAAAACTGACTTGTAAGGCA+AGG - chr2_4:52097348-52097367 None:intergenic 40.0%
!! CCGTACAAAACTGACTTGTA+AGG - chr2_4:52097353-52097372 None:intergenic 40.0%
!! CAGTTTTGTACGGGTGAATA+AGG + chr2_4:52097360-52097379 Msa0334020:intron 40.0%
TGAACGTTAACACAGCAGTA+AGG - chr2_4:52097420-52097439 None:intergenic 40.0%
TGTTGCAAGATGATAGCAAG+AGG - chr2_4:52097444-52097463 None:intergenic 40.0%
AATGTTGCAATCAGGATAGG+GGG - chr2_4:52097550-52097569 None:intergenic 40.0%
GAATGTTGCAATCAGGATAG+GGG - chr2_4:52097551-52097570 None:intergenic 40.0%
TATTCCCACACAGATCTTTG+CGG + chr2_4:52097930-52097949 Msa0334020:intron 40.0%
!! TTAGTACCGATAGTAGGTCT+TGG + chr2_4:52097955-52097974 Msa0334020:CDS 40.0%
! AAAGCACCAAGACCTACTAT+CGG - chr2_4:52097964-52097983 None:intergenic 40.0%
GCAGGTCGAGATATAATGAA+AGG + chr2_4:52097994-52098013 Msa0334020:CDS 40.0%
TATATGCAGTGTCCAAACTG+TGG + chr2_4:52098144-52098163 Msa0334020:intron 40.0%
GAAAAAGGTTGACCGCAAAA+TGG - chr2_4:52098328-52098347 None:intergenic 40.0%
! TTTTGCGGTCAACCTTTTTC+TGG + chr2_4:52098328-52098347 Msa0334020:CDS 40.0%
!! AACCTTTTTCTGGTAAGCTG+TGG + chr2_4:52098338-52098357 Msa0334020:intron 40.0%
AACCACAGCTTACCAGAAAA+AGG - chr2_4:52098343-52098362 None:intergenic 40.0%
CAGCACCATCAACAAAGATA+AGG - chr2_4:52098639-52098658 None:intergenic 40.0%
GTGTTTCCGTGTTTCGTTTA+TGG + chr2_4:52098658-52098677 Msa0334020:intron 40.0%
TGTCTGCCATAAACGAAACA+CGG - chr2_4:52098667-52098686 None:intergenic 40.0%
TGTTTCGTTTATGGCAGACA+AGG + chr2_4:52098667-52098686 Msa0334020:intron 40.0%
TTTATGGCAGACAAGGATTC+TGG + chr2_4:52098674-52098693 Msa0334020:intron 40.0%
! AGCTATATAAGCGAGAGCAT+TGG - chr2_4:52099196-52099215 None:intergenic 40.0%
! AAGAATCTGGAACTGGAATG+TGG + chr2_4:52099285-52099304 Msa0334020:intron 40.0%
! GGACATACTCAACATTGACT+AGG - chr2_4:52099400-52099419 None:intergenic 40.0%
TGGCAAGTGTTCGTTGGATT+TGG + chr2_4:52096369-52096388 Msa0334020:five_prime_UTR 45.0%
GGTTTAGACATGTCGTCGAA+TGG - chr2_4:52096512-52096531 None:intergenic 45.0%
!! GTTTCAAGTTGAGAGCATGC+AGG + chr2_4:52096715-52096734 Msa0334020:CDS 45.0%
!!! AGGGAGAGGTGCTCTTTTTT+GGG + chr2_4:52096735-52096754 Msa0334020:CDS 45.0%
TGGGTGTATGTGGGAAGAAA+AGG + chr2_4:52096776-52096795 Msa0334020:CDS 45.0%
GGGTGTATGTGGGAAGAAAA+GGG + chr2_4:52096777-52096796 Msa0334020:CDS 45.0%
GGTGTATGTGGGAAGAAAAG+GGG + chr2_4:52096778-52096797 Msa0334020:CDS 45.0%
! GGATTCAATAATGGTGGAGG+TGG + chr2_4:52096849-52096868 Msa0334020:CDS 45.0%
! TTCAATAATGGTGGAGGTGG+TGG + chr2_4:52096852-52096871 Msa0334020:CDS 45.0%
! TGGTAGCACTGCTAGGATTT+TGG + chr2_4:52096884-52096903 Msa0334020:CDS 45.0%
! GGTAGCACTGCTAGGATTTT+GGG + chr2_4:52096885-52096904 Msa0334020:CDS 45.0%
CTCTCAATGACTGGACAACT+TGG + chr2_4:52096939-52096958 Msa0334020:CDS 45.0%
!! AGAGAGAGAGAGTACCCAAA+TGG - chr2_4:52096988-52097007 None:intergenic 45.0%
TCTCTCTCTCTTGGTTTCCT+AGG + chr2_4:52097005-52097024 Msa0334020:intron 45.0%
AGGTAAGACGCGTCTATGAT+AGG + chr2_4:52097283-52097302 Msa0334020:intron 45.0%
GGTAAGACGCGTCTATGATA+GGG + chr2_4:52097284-52097303 Msa0334020:intron 45.0%
TAACACAGCAGTAAGGTTGC+TGG - chr2_4:52097413-52097432 None:intergenic 45.0%
AACACCGCAAAGATCTGTGT+GGG - chr2_4:52097937-52097956 None:intergenic 45.0%
TAACACCGCAAAGATCTGTG+TGG - chr2_4:52097938-52097957 None:intergenic 45.0%
! TTGCAGTTGTGCCCATTTTG+CGG + chr2_4:52098313-52098332 Msa0334020:CDS 45.0%
! ATCTGGAACTGGAATGTGGT+TGG + chr2_4:52099289-52099308 Msa0334020:intron 45.0%
!!! CAGGGAGAGGTGCTCTTTTT+TGG + chr2_4:52096734-52096753 Msa0334020:CDS 50.0%
!!! GAGAGGTGCTCTTTTTTGGG+AGG + chr2_4:52096738-52096757 Msa0334020:CDS 50.0%
! GGAAGAAAAGGGGTGCAAGA+GGG + chr2_4:52096788-52096807 Msa0334020:CDS 50.0%
GTGCAAGAGGGAAAAGAGAG+TGG + chr2_4:52096800-52096819 Msa0334020:CDS 50.0%
! GAGATGATGGTAGCACTGCT+AGG + chr2_4:52096877-52096896 Msa0334020:CDS 50.0%
GAAATCTTGCTCTGGCTGCT+GGG + chr2_4:52096907-52096926 Msa0334020:CDS 50.0%
CAATGACTGGACAACTTGGC+TGG + chr2_4:52096943-52096962 Msa0334020:CDS 50.0%
CTCTCTCTCTCTCTCTCTCT+TGG + chr2_4:52096996-52097015 Msa0334020:intron 50.0%
GGATAGGGGGAGATTCTACA+AGG - chr2_4:52097537-52097556 None:intergenic 50.0%
!! GCGGTGTTAGTACCGATAGT+AGG + chr2_4:52097949-52097968 Msa0334020:CDS 50.0%
!! TAGGTCTTGGTGCTTTCCTC+TGG + chr2_4:52097968-52097987 Msa0334020:CDS 50.0%
!! TCTTGGTGCTTTCCTCTGGT+GGG + chr2_4:52097972-52097991 Msa0334020:CDS 50.0%
TCGTTCAGTTAAACAGGCCG+TGG + chr2_4:52099547-52099566 Msa0334020:three_prime_UTR 50.0%
ACTCGTTGCGTCTTAAGCAC+CGG - chr2_4:52099583-52099602 None:intergenic 50.0%
CCAACGAACACTTGCCACGT+TGG - chr2_4:52096366-52096385 None:intergenic 55.0%
CCAACGTGGCAAGTGTTCGT+TGG + chr2_4:52096363-52096382 Msa0334020:five_prime_UTR 55.0%
! AGTTGAGAGCATGCAGGGAG+AGG + chr2_4:52096721-52096740 Msa0334020:CDS 55.0%
! GGGAAGAAAAGGGGTGCAAG+AGG + chr2_4:52096787-52096806 Msa0334020:CDS 55.0%
!! GGAGGTGGTGGAAGAGATGA+TGG + chr2_4:52096864-52096883 Msa0334020:CDS 55.0%
GGAAATCTTGCTCTGGCTGC+TGG + chr2_4:52096906-52096925 Msa0334020:CDS 55.0%
!! GTCTTGGTGCTTTCCTCTGG+TGG + chr2_4:52097971-52097990 Msa0334020:CDS 55.0%
!! AGGCCGTGGCTTGCATTTTC+CGG + chr2_4:52099561-52099580 Msa0334020:three_prime_UTR 55.0%
GCACCGGAAAATGCAAGCCA+CGG - chr2_4:52099567-52099586 None:intergenic 55.0%
TATCTCGACCTGCCCACCAG+AGG - chr2_4:52097987-52098006 None:intergenic 60.0%
! GGTGCTTTCCTCTGGTGGGC+AGG + chr2_4:52097976-52097995 Msa0334020:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 52096356 52099809 52096356 ID=Msa0334020;Name=Msa0334020
chr2_4 mRNA 52096356 52099809 52096356 ID=Msa0334020-mRNA-1;Parent=Msa0334020;Name=Msa0334020-mRNA-1;_AED=0.10;_eAED=0.10;_QI=232|1|1|1|0.83|0.71|7|312|241
chr2_4 exon 52096356 52096992 52096356 ID=Msa0334020-mRNA-1:exon:15690;Parent=Msa0334020-mRNA-1
chr2_4 exon 52097943 52098020 52097943 ID=Msa0334020-mRNA-1:exon:15691;Parent=Msa0334020-mRNA-1
chr2_4 exon 52098153 52098187 52098153 ID=Msa0334020-mRNA-1:exon:15692;Parent=Msa0334020-mRNA-1
chr2_4 exon 52098294 52098349 52098294 ID=Msa0334020-mRNA-1:exon:15693;Parent=Msa0334020-mRNA-1
chr2_4 exon 52098468 52098563 52098468 ID=Msa0334020-mRNA-1:exon:15694;Parent=Msa0334020-mRNA-1
chr2_4 exon 52098684 52098765 52098684 ID=Msa0334020-mRNA-1:exon:15695;Parent=Msa0334020-mRNA-1
chr2_4 exon 52099524 52099809 52099524 ID=Msa0334020-mRNA-1:exon:15696;Parent=Msa0334020-mRNA-1
chr2_4 five_prime_UTR 52096356 52096587 52096356 ID=Msa0334020-mRNA-1:five_prime_utr;Parent=Msa0334020-mRNA-1
chr2_4 CDS 52096588 52096992 52096588 ID=Msa0334020-mRNA-1:cds;Parent=Msa0334020-mRNA-1
chr2_4 CDS 52097943 52098020 52097943 ID=Msa0334020-mRNA-1:cds;Parent=Msa0334020-mRNA-1
chr2_4 CDS 52098153 52098187 52098153 ID=Msa0334020-mRNA-1:cds;Parent=Msa0334020-mRNA-1
chr2_4 CDS 52098294 52098349 52098294 ID=Msa0334020-mRNA-1:cds;Parent=Msa0334020-mRNA-1
chr2_4 CDS 52098468 52098563 52098468 ID=Msa0334020-mRNA-1:cds;Parent=Msa0334020-mRNA-1
chr2_4 CDS 52098684 52098739 52098684 ID=Msa0334020-mRNA-1:cds;Parent=Msa0334020-mRNA-1
chr2_4 three_prime_UTR 52098740 52098765 52098740 ID=Msa0334020-mRNA-1:three_prime_utr;Parent=Msa0334020-mRNA-1
chr2_4 three_prime_UTR 52099524 52099809 52099524 ID=Msa0334020-mRNA-1:three_prime_utr;Parent=Msa0334020-mRNA-1
Gene Sequence

>Msa0334020

ATGTCCACTCTTGTACAATTCTCTATCAAATTTTCACACTTGAAACCCAATGATAACATATACAAGACACAACCCACCTTTTCTTTCTCCAATTTAGACCCAAAGTTTACTTCTTTTCATCTGGGTGGTTTCAAGTTGAGAGCATGCAGGGAGAGGTGCTCTTTTTTGGGAGGCGCAGTATTTAAAAATGGGTGTATGTGGGAAGAAAAGGGGTGCAAGAGGGAAAAGAGAGTGGTTTTAGTAAAGAATAATAAAGGATTTGGATTCAATAATGGTGGAGGTGGTGGAAGAGATGATGGTAGCACTGCTAGGATTTTGGGAAATCTTGCTCTGGCTGCTGGGTTGACTTATCTCTCAATGACTGGACAACTTGGCTGGATAATTGATGCTATTGTTTCCATTTGGATCTTTGCGGTGTTAGTACCGATAGTAGGTCTTGGTGCTTTCCTCTGGTGGGCAGGTCGAGATATAATGAAAGGCACTTGTCCAAACTGTGGAAATGATTTTCAGGTTTTCAAATCCACTTTAAATGAAGAATTGCAGTTGTGCCCATTTTGCGGTCAACCTTTTTCTGTTGATGGTAATGAGTTTGTCAAGGAACCTGTGAATTTTTCAAACCAATCTACAACATTTGGACAAGCATTCGACAATTTCTCGCGTTCTAAAAATGACAAGGATTCTGGTAGAGCAATTGATGTTGAAGCCGAAATAAAAGACGCAGATTGA

Protein sequence

>Msa0334020

MSTLVQFSIKFSHLKPNDNIYKTQPTFSFSNLDPKFTSFHLGGFKLRACRERCSFLGGAVFKNGCMWEEKGCKREKRVVLVKNNKGFGFNNGGGGGRDDGSTARILGNLALAAGLTYLSMTGQLGWIIDAIVSIWIFAVLVPIVGLGAFLWWAGRDIMKGTCPNCGNDFQVFKSTLNEELQLCPFCGQPFSVDGNEFVKEPVNFSNQSTTFGQAFDNFSRSKNDKDSGRAIDVEAEIKDAD*