AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1423230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423230 MtrunA17_Chr8g0384691 92.582 337 19 2 1 336 1 332 0.0 583
Msa1423230 MtrunA17_Chr3g0130681 65.385 208 70 1 122 329 101 306 1.00e-103 306
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423230 AT4G33480.1 68.720 211 65 1 122 331 124 334 7.37e-102 303

Find 72 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAGGACCTGTAAAATTAT+AGG 0.218189 tig0025516:+43283 Msa1423230:three_prime_UTR
GTTGTTACTGGTGTTGCTTC+TGG 0.256857 tig0025516:+38030 Msa1423230:CDS
TGTTAGTAATTGTTGTAATC+TGG 0.263737 tig0025516:+43218 Msa1423230:three_prime_UTR
AAGAATTGGAATGAGAATTA+AGG 0.278335 tig0025516:-37819 None:intergenic
AGTTAGTATTTGTTGTTATC+TGG 0.290200 tig0025516:+43169 Msa1423230:three_prime_UTR
TAAGGACCTGTAAAATTATA+GGG 0.308395 tig0025516:+43284 Msa1423230:three_prime_UTR
ACAGAAAATTGTAGAAGAAT+TGG 0.315728 tig0025516:-37833 None:intergenic
GCAAACCCGGTGGGAGGTTC+CGG 0.321014 tig0025516:-38087 None:intergenic
TCCTGATGATATGCCGTTGC+CGG 0.337706 tig0025516:+38068 Msa1423230:CDS
GATGTTCAAAATGTTGTTAC+TGG 0.344264 tig0025516:+38018 Msa1423230:CDS
AAATTCAGTCTCCTCGTCTA+TGG 0.365085 tig0025516:-42765 None:intergenic
TTAATTACTTACGTGTCAAC+CGG 0.369775 tig0025516:-38337 None:intergenic
GCTCAGGTCAATGAGCAAAT+TGG 0.397251 tig0025516:-43341 None:intergenic
AAATAGATTGACTGTGCTCT+TGG 0.399674 tig0025516:+43307 Msa1423230:three_prime_UTR
CATTTGTGAACAGGACTTGC+TGG 0.414686 tig0025516:+42721 Msa1423230:intron
TTCTGCTTACTTCAACAAAT+CGG 0.416331 tig0025516:+38130 Msa1423230:CDS
CAATAATTCAAAATCAGTAT+TGG 0.434374 tig0025516:-37974 None:intergenic
TTCCGTTGGAGTGTGTGGTT+CGG 0.440368 tig0025516:+38269 Msa1423230:CDS
TTATTTGTGCAGGGTGAGAA+TGG 0.443645 tig0025516:+42340 Msa1423230:intron
CTTCAGTTGAAACTGAGGAT+TGG 0.448739 tig0025516:+37938 Msa1423230:CDS
TCCGGCAACGGCATATCATC+AGG 0.470462 tig0025516:-38069 None:intergenic
GGAGACTGAATTTAATGCCT+TGG 0.472300 tig0025516:+42775 Msa1423230:CDS
TCCAACGGAAGGTTATTCAT+AGG 0.482809 tig0025516:-38256 None:intergenic
GGGTTTGCCATTGACGAAAA+CGG 0.491547 tig0025516:+38102 Msa1423230:CDS
CCGTTGCCGGAACCTCCCAC+CGG 0.491708 tig0025516:+38081 Msa1423230:CDS
CGGTAAAATCAACCGTGCTC+AGG 0.495598 tig0025516:-43357 None:intergenic
AACAAGATGCATGTGTATCT+TGG 0.502259 tig0025516:-39429 None:intergenic
GACTGAATTTAATGCCTTGG+TGG 0.506705 tig0025516:+42778 Msa1423230:CDS
TGAATGTATGTTGCTTTGCC+CGG 0.514398 tig0025516:+38318 Msa1423230:CDS
GCGAGCGCATACGCTGCAGC+AGG 0.519080 tig0025516:-39407 None:intergenic
TCCTATGAATAACCTTCCGT+TGG 0.519345 tig0025516:+38255 Msa1423230:CDS
GTGCTCTTCAATATTTGCAC+AGG 0.520741 tig0025516:-38448 None:intergenic
AAAATTGATCATATACATAG+AGG 0.521725 tig0025516:-43260 None:intergenic
AAATTGATCATATACATAGA+GGG 0.530400 tig0025516:-43259 None:intergenic
ACTTCAGTTTGTTGTTGTGA+AGG 0.541807 tig0025516:+41430 Msa1423230:CDS
ACATGCATCTTGTTTACAGC+GGG 0.542894 tig0025516:+39438 Msa1423230:CDS
CCGGTGGGAGGTTCCGGCAA+CGG 0.543817 tig0025516:-38081 None:intergenic
TGCACTTATTGAAGCAATGA+TGG 0.547958 tig0025516:+43059 Msa1423230:CDS
AATTGCAACTGCTGCTGCTG+AGG 0.548569 tig0025516:-37737 None:intergenic
CGTTGCCGGAACCTCCCACC+GGG 0.548585 tig0025516:+38082 Msa1423230:CDS
ATCATCAGGATAAAATAAAG+AGG 0.555773 tig0025516:-38055 None:intergenic
TATTTGTGCAGGGTGAGAAT+GGG 0.556129 tig0025516:+42341 Msa1423230:intron
CTTACAGCTGACCATCCATC+AGG 0.563519 tig0025516:-38472 None:intergenic
TAATTACTTACGTGTCAACC+GGG 0.577475 tig0025516:-38336 None:intergenic
TCTATGGCGTCAATGACAGC+AGG 0.580809 tig0025516:-42749 None:intergenic
TAACCTTCCGTTGGAGTGTG+TGG 0.581027 tig0025516:+38264 Msa1423230:CDS
TTCACAACAACAAACTGAAG+TGG 0.585546 tig0025516:-41428 None:intergenic
TTCGTCAATGGCAAACCCGG+TGG 0.591270 tig0025516:-38097 None:intergenic
AAAACAAAGATAGATGAGAT+CGG 0.591300 tig0025516:-43377 None:intergenic
ATATTGAAGAGCACACCTGA+TGG 0.594346 tig0025516:+38457 Msa1423230:CDS
TGCAGATGATGGTAATGAAG+TGG 0.597707 tig0025516:+40606 Msa1423230:intron
TGAAGAGCACACCTGATGGA+TGG 0.603729 tig0025516:+38461 Msa1423230:CDS
TGAGAATGGGATGTTTCAAA+TGG 0.603878 tig0025516:+42354 Msa1423230:CDS
TTTGCTCATTGACCTGAGCA+CGG 0.605141 tig0025516:+43345 Msa1423230:three_prime_UTR
GTAATTTCTACACCATCACT+TGG 0.605477 tig0025516:-40637 None:intergenic
GTGGATGGCTTGCCAAGTGA+TGG 0.606609 tig0025516:+40625 Msa1423230:CDS
GATTACAACAATTACTAACA+AGG 0.607104 tig0025516:-43215 None:intergenic
ACAAACTGAAGTGGTTCAGA+TGG 0.608941 tig0025516:-41419 None:intergenic
CTCCGAACCACACACTCCAA+CGG 0.614714 tig0025516:-38271 None:intergenic
GAATTCTTCAGTTGAAACTG+AGG 0.615714 tig0025516:+37933 Msa1423230:CDS
TCGTCAATGGCAAACCCGGT+GGG 0.620091 tig0025516:-38096 None:intergenic
ATTACAACAATTACTAACAA+GGG 0.630057 tig0025516:-43214 None:intergenic
GAACCACACACTCCAACGGA+AGG 0.636707 tig0025516:-38267 None:intergenic
CACATGCATCTTGTTTACAG+CGG 0.646015 tig0025516:+39437 Msa1423230:CDS
TCAATGGCAAACCCGGTGGG+AGG 0.656601 tig0025516:-38093 None:intergenic
TGTCATTGACGCCATAGACG+AGG 0.663191 tig0025516:+42754 Msa1423230:CDS
TACTGTTACACAGCACGTGG+CGG 0.668638 tig0025516:+39549 Msa1423230:CDS
AATTGATCATATACATAGAG+GGG 0.671889 tig0025516:-43258 None:intergenic
GATATACTTGACTTCCACAC+AGG 0.674786 tig0025516:+39591 Msa1423230:CDS
GATGATGGTAATGAAGTGGA+TGG 0.699911 tig0025516:+40610 Msa1423230:intron
AGGTACTGTTACACAGCACG+TGG 0.735751 tig0025516:+39546 Msa1423230:intron
AATGAAGTCACATACCACCA+AGG 0.747149 tig0025516:-42792 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAGAAAAAAAAAAAAAAAA+AGG - tig0025516:39308-39327 None:intergenic 10.0%
!!! ATTTTAAATAAGTTGTTAAC+AGG + tig0025516:38228-38247 Msa1423230:intron 15.0%
!!! TTTATTATTATTGATGACTA+TGG + tig0025516:38402-38421 Msa1423230:intron 15.0%
!! AAAATTAAATAACACGATTT+AGG - tig0025516:38751-38770 None:intergenic 15.0%
!!! TTATTTTAGTTTTTGTGATA+TGG + tig0025516:39159-39178 Msa1423230:intron 15.0%
!! AATTAAAATCTATGTTTGTA+TGG + tig0025516:39197-39216 Msa1423230:intron 15.0%
!! AAAAAAAAAAAAAAAGGGAA+AGG - tig0025516:39302-39321 None:intergenic 15.0%
!! AAAATGAAAAGTTAATCTTT+AGG + tig0025516:40452-40471 Msa1423230:intron 15.0%
!!! GGTAATTTTATTAACTTAAT+TGG + tig0025516:40672-40691 Msa1423230:intron 15.0%
!!! GCTTCTAAATTTAAAATTAA+TGG - tig0025516:41115-41134 None:intergenic 15.0%
!! ATGAAAATATGTTAATAAGT+CGG + tig0025516:41722-41741 Msa1423230:intron 15.0%
!!! TCTTATAATCCAATTTTATA+AGG + tig0025516:41756-41775 Msa1423230:intron 15.0%
!! AGATATTATGATAATTAACT+TGG + tig0025516:42314-42333 Msa1423230:intron 15.0%
!!! TTTTGTAGTTAATTAATGAT+TGG - tig0025516:42404-42423 None:intergenic 15.0%
!! ATTAGATTACAGAGAAAAAA+GGG + tig0025516:37686-37705 Msa1423230:five_prime_UTR 20.0%
!!! TTTTGAAATGAAACTGAAAT+TGG - tig0025516:37799-37818 None:intergenic 20.0%
!! CAATAATTCAAAATCAGTAT+TGG - tig0025516:37977-37996 None:intergenic 20.0%
!!! ATATGGAATTTTATTAATGC+AGG + tig0025516:38425-38444 Msa1423230:intron 20.0%
!!! AAATTGAGATTTAAAATGCA+GGG - tig0025516:38504-38523 None:intergenic 20.0%
!! ATTCTTAATGTTATCTTGAA+TGG + tig0025516:38571-38590 Msa1423230:intron 20.0%
!! ATGCTTTAATAAGAGTTTAA+TGG + tig0025516:38791-38810 Msa1423230:intron 20.0%
!!! TTGTATGAACATTTTGAAAT+TGG - tig0025516:38889-38908 None:intergenic 20.0%
!! TCAAAATGTTCATACAAAAA+TGG + tig0025516:38892-38911 Msa1423230:intron 20.0%
!! CAAAATGTTCATACAAAAAT+GGG + tig0025516:38893-38912 Msa1423230:intron 20.0%
!! AAAATGTTCATACAAAAATG+GGG + tig0025516:38894-38913 Msa1423230:intron 20.0%
!!! CTGTAGATCATAATTTTTAA+AGG - tig0025516:38975-38994 None:intergenic 20.0%
!! ATACAAATACTTCATAGTTT+AGG - tig0025516:39069-39088 None:intergenic 20.0%
!! ATAACAAACAACGAAATATT+GGG - tig0025516:39097-39116 None:intergenic 20.0%
!!! AATATTTCGTTGTTTGTTAT+GGG + tig0025516:39097-39116 Msa1423230:intron 20.0%
!! CTTATTCTTGTGATATTATA+AGG + tig0025516:39947-39966 Msa1423230:intron 20.0%
!! GAAGTTGCTAAATTATAATA+CGG - tig0025516:40101-40120 None:intergenic 20.0%
!! AGGAAGTTATTATCAATATA+TGG + tig0025516:40472-40491 Msa1423230:intron 20.0%
!!! AGAAATTACATATTTTGATC+TGG + tig0025516:40651-40670 Msa1423230:CDS 20.0%
!! TGAAGTGAAAAATAAAAAAC+GGG - tig0025516:40807-40826 None:intergenic 20.0%
!! GTGAAGTGAAAAATAAAAAA+CGG - tig0025516:40808-40827 None:intergenic 20.0%
!! ATAAGTTCATTTCAATGAAT+TGG - tig0025516:40851-40870 None:intergenic 20.0%
!!! AAATTTAAAATTAATGGACG+AGG - tig0025516:41109-41128 None:intergenic 20.0%
!! ATTTAACTAATATTCAGAAG+AGG + tig0025516:41543-41562 Msa1423230:intron 20.0%
!! TGAAAATATGTTAATAAGTC+GGG + tig0025516:41723-41742 Msa1423230:intron 20.0%
!! AAGAAAATATATAGGAGAAT+TGG - tig0025516:42061-42080 None:intergenic 20.0%
!! ATCTTAAACAAGTCTATAAA+AGG - tig0025516:42165-42184 None:intergenic 20.0%
!!! TAGATCTGAATTTTTACAAT+TGG + tig0025516:42280-42299 Msa1423230:intron 20.0%
!!! ATTGAATTTGAAACTAAGAA+AGG - tig0025516:42441-42460 None:intergenic 20.0%
!! TTTAGTAAATTATGATACGA+TGG + tig0025516:42818-42837 Msa1423230:intron 20.0%
!! CATGGAATAAATAGTTAAAA+AGG - tig0025516:42976-42995 None:intergenic 20.0%
!! ATTACAACAATTACTAACAA+GGG - tig0025516:43217-43236 None:intergenic 20.0%
!! AAATTGATCATATACATAGA+GGG - tig0025516:43262-43281 None:intergenic 20.0%
!! AAAATTGATCATATACATAG+AGG - tig0025516:43263-43282 None:intergenic 20.0%
!!! TGTATATGATCAATTTTGTA+AGG + tig0025516:43266-43285 Msa1423230:three_prime_UTR 20.0%
!!! TTTTGATTGTTTTTCAGTTT+TGG + tig0025516:43404-43423 Msa1423230:intron 20.0%
! GATTAGATTACAGAGAAAAA+AGG + tig0025516:37685-37704 Msa1423230:five_prime_UTR 25.0%
! TTAGATTACAGAGAAAAAAG+GGG + tig0025516:37687-37706 Msa1423230:five_prime_UTR 25.0%
! AAGAATTGGAATGAGAATTA+AGG - tig0025516:37822-37841 None:intergenic 25.0%
! ACAGAAAATTGTAGAAGAAT+TGG - tig0025516:37836-37855 None:intergenic 25.0%
! ATCATCAGGATAAAATAAAG+AGG - tig0025516:38058-38077 None:intergenic 25.0%
! TTGACACGTAAGTAATTAAA+AGG + tig0025516:38341-38360 Msa1423230:intron 25.0%
!! ATTAAAAGGTTTTACAACGT+CGG + tig0025516:38355-38374 Msa1423230:intron 25.0%
!! ATTATTGATGACTATGGATA+TGG + tig0025516:38408-38427 Msa1423230:intron 25.0%
!! CAAATTGAGATTTAAAATGC+AGG - tig0025516:38505-38524 None:intergenic 25.0%
! TCTAATGTGAGTTTACTTTA+AGG + tig0025516:38604-38623 Msa1423230:intron 25.0%
! TCTCAATAATTGATGAGAAA+AGG - tig0025516:38713-38732 None:intergenic 25.0%
! TTAAATAACACGATTTAGGT+TGG - tig0025516:38747-38766 None:intergenic 25.0%
! AAGCATTATTCAAAGAGATT+TGG - tig0025516:38777-38796 None:intergenic 25.0%
!!! TATGAACATTTTGAAATTGG+TGG - tig0025516:38886-38905 None:intergenic 25.0%
!!! GAAAATTGATGGATTTTCAT+TGG + tig0025516:38923-38942 Msa1423230:intron 25.0%
! CATAACAAACAACGAAATAT+TGG - tig0025516:39098-39117 None:intergenic 25.0%
!! CAATATTTCGTTGTTTGTTA+TGG + tig0025516:39096-39115 Msa1423230:intron 25.0%
! ATAAAAATGAGTGATATGCA+GGG - tig0025516:39143-39162 None:intergenic 25.0%
! AATAAAAATGAGTGATATGC+AGG - tig0025516:39144-39163 None:intergenic 25.0%
! AAAAAGAATGTCATTGTATG+TGG - tig0025516:39255-39274 None:intergenic 25.0%
!! GAAATATGTATTTTCGCATA+AGG - tig0025516:39280-39299 None:intergenic 25.0%
! TTAGCAAATACAACTCTAAA+CGG - tig0025516:39791-39810 None:intergenic 25.0%
!! CTAAAAACTTGTCAAGTTTT+TGG + tig0025516:39807-39826 Msa1423230:intron 25.0%
! ACTACTATAAACTAAAAGAG+AGG - tig0025516:39871-39890 None:intergenic 25.0%
!! TTTATAGTAGTGTTTTTCGT+GGG + tig0025516:39880-39899 Msa1423230:intron 25.0%
! TGATATTATAAGGAGATGTT+TGG + tig0025516:39957-39976 Msa1423230:intron 25.0%
! GATATTATAAGGAGATGTTT+GGG + tig0025516:39958-39977 Msa1423230:intron 25.0%
! GAATTTATGTTTACAACTAC+TGG + tig0025516:40033-40052 Msa1423230:intron 25.0%
! GAATTTATGTTTACAACTAC+TGG + tig0025516:40033-40052 Msa1423230:intron 25.0%
! TATAATTTCATGTGCAAGTT+AGG + tig0025516:40218-40237 Msa1423230:intron 25.0%
! TCTAATTATGCAACAATTCA+TGG - tig0025516:40248-40267 None:intergenic 25.0%
! CGAGTAACAATGAATATATA+TGG - tig0025516:40317-40336 None:intergenic 25.0%
! AATCAAGCATGAAAAAACTT+GGG - tig0025516:40378-40397 None:intergenic 25.0%
! CAGTTGGAAAAATGAAAATT+AGG - tig0025516:40401-40420 None:intergenic 25.0%
! TTATTATCAATATATGGCCA+GGG + tig0025516:40478-40497 Msa1423230:intron 25.0%
!!! TTGATTTTTTTTCTCAATCG+AGG + tig0025516:40716-40735 Msa1423230:intron 25.0%
!! TATTTTTCACTTCACTAGTA+TGG + tig0025516:40813-40832 Msa1423230:intron 25.0%
! AAGACTTGATAAAAACAGAT+GGG - tig0025516:40948-40967 None:intergenic 25.0%
! AAAGACTTGATAAAAACAGA+TGG - tig0025516:40949-40968 None:intergenic 25.0%
!!! TCTGTTTTTATCAAGTCTTT+TGG + tig0025516:40949-40968 Msa1423230:intron 25.0%
! ACAAGAATAATGTATAGATC+AGG - tig0025516:40986-41005 None:intergenic 25.0%
!! AGAAAGTACAATCAATACTA+CGG - tig0025516:41025-41044 None:intergenic 25.0%
! ACTTCATGATATAAACACTA+TGG - tig0025516:41053-41072 None:intergenic 25.0%
!!! ACTTTTTCTTTCTAAATCGA+GGG + tig0025516:41164-41183 Msa1423230:intron 25.0%
!!! AATAGTCCTTTTTTTTTTGC+AGG + tig0025516:41370-41389 Msa1423230:intron 25.0%
! TATCTTCCTGCAAAAAAAAA+AGG - tig0025516:41379-41398 None:intergenic 25.0%
!!! AACGTTTTCCTTTTAATTTC+TGG - tig0025516:41513-41532 None:intergenic 25.0%
! AAAAGGAAAACGTTTGATAT+TGG + tig0025516:41519-41538 Msa1423230:intron 25.0%
!!! TCTTATTTTCTATTTCTGCA+AGG - tig0025516:41637-41656 None:intergenic 25.0%
! GAAAATATGTTAATAAGTCG+GGG + tig0025516:41724-41743 Msa1423230:intron 25.0%
! AATCAATCGCCTTATAAAAT+TGG - tig0025516:41768-41787 None:intergenic 25.0%
!!! TTTTATAAGGCGATTGATTT+AGG + tig0025516:41769-41788 Msa1423230:intron 25.0%
! TTTATACGAACACAGAATTT+GGG - tig0025516:41800-41819 None:intergenic 25.0%
!! TTTTATACGAACACAGAATT+TGG - tig0025516:41801-41820 None:intergenic 25.0%
! TAAACAAGTCTATAAAAGGA+GGG - tig0025516:42161-42180 None:intergenic 25.0%
! TTAAACAAGTCTATAAAAGG+AGG - tig0025516:42162-42181 None:intergenic 25.0%
!! TTTGAAACTAAGAAAGGAAT+TGG - tig0025516:42435-42454 None:intergenic 25.0%
! TCTCGTATGCATTTATAATA+TGG + tig0025516:42603-42622 Msa1423230:intron 25.0%
!! TACAGCTAAAAAAGTATATC+GGG - tig0025516:43115-43134 None:intergenic 25.0%
!! CTACAGCTAAAAAAGTATAT+CGG - tig0025516:43116-43135 None:intergenic 25.0%
!!! AGTTAGTATTTGTTGTTATC+TGG + tig0025516:43169-43188 Msa1423230:three_prime_UTR 25.0%
! GATTACAACAATTACTAACA+AGG - tig0025516:43218-43237 None:intergenic 25.0%
! TGTTAGTAATTGTTGTAATC+TGG + tig0025516:43218-43237 Msa1423230:three_prime_UTR 25.0%
! AATTGATCATATACATAGAG+GGG - tig0025516:43261-43280 None:intergenic 25.0%
! TAAGGACCTGTAAAATTATA+GGG + tig0025516:43284-43303 Msa1423230:three_prime_UTR 25.0%
!! CTATTTCCCTATAATTTTAC+AGG - tig0025516:43293-43312 None:intergenic 25.0%
! AAAACAAAGATAGATGAGAT+CGG - tig0025516:43380-43399 None:intergenic 25.0%
!! AGTTTTACATGTCATTGTTT+AGG + tig0025516:43449-43468 Msa1423230:three_prime_UTR 25.0%
! AGGAGAATTTTTCTGTGATT+TGG - tig0025516:37866-37885 None:intergenic 30.0%
! ATTATTGCGTGATTTTTCTG+CGG + tig0025516:37990-38009 Msa1423230:CDS 30.0%
GATGTTCAAAATGTTGTTAC+TGG + tig0025516:38018-38037 Msa1423230:CDS 30.0%
TTCTGCTTACTTCAACAAAT+CGG + tig0025516:38130-38149 Msa1423230:CDS 30.0%
TTAATTACTTACGTGTCAAC+CGG - tig0025516:38340-38359 None:intergenic 30.0%
GTTGCATCTAATCTTCATTT+AGG + tig0025516:38541-38560 Msa1423230:intron 30.0%
GTAAAACTATTTCACAGTGA+CGG - tig0025516:38824-38843 None:intergenic 30.0%
AAAATATCTCTGTCCATATC+AGG + tig0025516:39526-39545 Msa1423230:intron 30.0%
TAAAAAAATACTTGCCTGTG+TGG - tig0025516:39608-39627 None:intergenic 30.0%
ACATTAGTACTTCAGAGAAT+GGG - tig0025516:39635-39654 None:intergenic 30.0%
TTAGAGTGTAAACAAAGCAA+AGG + tig0025516:39670-39689 Msa1423230:intron 30.0%
TAGAGTGTAAACAAAGCAAA+GGG + tig0025516:39671-39690 Msa1423230:intron 30.0%
! GTTTATAGTAGTGTTTTTCG+TGG + tig0025516:39879-39898 Msa1423230:intron 30.0%
TTCATTCTCCTTAGTAAGAA+GGG - tig0025516:39915-39934 None:intergenic 30.0%
ATTCATTCTCCTTAGTAAGA+AGG - tig0025516:39916-39935 None:intergenic 30.0%
TATCACAAGAATAAGTGACT+TGG - tig0025516:39942-39961 None:intergenic 30.0%
CAACTACTGGACTTAAAATT+TGG + tig0025516:40046-40065 Msa1423230:intron 30.0%
ATCAAGCATGAAAAAACTTG+GGG - tig0025516:40377-40396 None:intergenic 30.0%
GAATCAAGCATGAAAAAACT+TGG - tig0025516:40379-40398 None:intergenic 30.0%
GTTATTATCAATATATGGCC+AGG + tig0025516:40477-40496 Msa1423230:intron 30.0%
! TAATACCATTTTGCAGATGA+TGG + tig0025516:40595-40614 Msa1423230:intron 30.0%
TAAGTGTTTCCAAGTTAGTA+AGG + tig0025516:40747-40766 Msa1423230:intron 30.0%
! GCTTTGTATAGATGCATTTT+TGG + tig0025516:41075-41094 Msa1423230:intron 30.0%
! TAAATTTAGAAGCGTGACAA+AGG + tig0025516:41122-41141 Msa1423230:intron 30.0%
!! GACTTTTTCTTTCTAAATCG+AGG + tig0025516:41163-41182 Msa1423230:intron 30.0%
GATAGTTGTAAAGTGACTAT+TGG - tig0025516:41220-41239 None:intergenic 30.0%
CTTAACATTATTCCCATAGT+GGG - tig0025516:41678-41697 None:intergenic 30.0%
TCTTAACATTATTCCCATAG+TGG - tig0025516:41679-41698 None:intergenic 30.0%
!! TAGGTTTTGTAGTGGAATTT+GGG - tig0025516:42020-42039 None:intergenic 30.0%
AGACGGAGAAGAAAATATAT+AGG - tig0025516:42069-42088 None:intergenic 30.0%
AAACAAGTCTATAAAAGGAG+GGG - tig0025516:42160-42179 None:intergenic 30.0%
AGTAAAAGGGGAGAAAAAAT+AGG - tig0025516:42488-42507 None:intergenic 30.0%
TCTCAGAAAAAGGAGTAAAA+GGG - tig0025516:42501-42520 None:intergenic 30.0%
ATCTCAGAAAAAGGAGTAAA+AGG - tig0025516:42502-42521 None:intergenic 30.0%
ATATTAAGGCAACCAAAATC+TGG - tig0025516:42550-42569 None:intergenic 30.0%
! TTGGTTGCCTTAATATTTTC+CGG + tig0025516:42554-42573 Msa1423230:intron 30.0%
TCGTCAAACTTAATGTAACA+TGG - tig0025516:42994-43013 None:intergenic 30.0%
GTAAGGACCTGTAAAATTAT+AGG + tig0025516:43283-43302 Msa1423230:three_prime_UTR 30.0%
ACAGAGAAAAAAGGGGAAAA+AGG + tig0025516:37694-37713 Msa1423230:five_prime_UTR 35.0%
CAGAGAAAAAAGGGGAAAAA+GGG + tig0025516:37695-37714 Msa1423230:five_prime_UTR 35.0%
! TTTCTTCGTCTTCTTTTTGG+AGG - tig0025516:37908-37927 None:intergenic 35.0%
! CCTTTTCTTCGTCTTCTTTT+TGG - tig0025516:37911-37930 None:intergenic 35.0%
CCAAAAAGAAGACGAAGAAA+AGG + tig0025516:37908-37927 Msa1423230:CDS 35.0%
GAATTCTTCAGTTGAAACTG+AGG + tig0025516:37933-37952 Msa1423230:CDS 35.0%
! AATTTCACCGTTTTCGTCAA+TGG - tig0025516:38112-38131 None:intergenic 35.0%
TAATTACTTACGTGTCAACC+GGG - tig0025516:38339-38358 None:intergenic 35.0%
TCGACAAATGAGCTTCTTTA+CGG - tig0025516:38631-38650 None:intergenic 35.0%
TAAAGAAGCTCATTTGTCGA+TGG + tig0025516:38631-38650 Msa1423230:intron 35.0%
AAAGAAGCTCATTTGTCGAT+GGG + tig0025516:38632-38651 Msa1423230:intron 35.0%
! TTGAAATTGGTGGTATGACA+TGG - tig0025516:38876-38895 None:intergenic 35.0%
!! GATGGATTTTCATTGGATGT+CGG + tig0025516:38930-38949 Msa1423230:intron 35.0%
!! TTTCGTTGTTTGTTATGGGA+TGG + tig0025516:39101-39120 Msa1423230:intron 35.0%
TTGTGATATGGACAGATAAC+AGG + tig0025516:39171-39190 Msa1423230:intron 35.0%
CAGAAGGAAGACATGAATTT+GGG - tig0025516:39349-39368 None:intergenic 35.0%
ACAGAAGGAAGACATGAATT+TGG - tig0025516:39350-39369 None:intergenic 35.0%
AACAAGATGCATGTGTATCT+TGG - tig0025516:39432-39451 None:intergenic 35.0%
GACATTAGTACTTCAGAGAA+TGG - tig0025516:39636-39655 None:intergenic 35.0%
AGCAAAGGGTTTATTCAGTT+TGG + tig0025516:39685-39704 Msa1423230:intron 35.0%
GAATCGTACTACACTTTAAC+AGG - tig0025516:39733-39752 None:intergenic 35.0%
ATTTAGACCCCTTCTTACTA+AGG + tig0025516:39904-39923 Msa1423230:intron 35.0%
TCATTCTCCTTAGTAAGAAG+GGG - tig0025516:39914-39933 None:intergenic 35.0%
CAACTACTGGACTTAAAGTT+TGG + tig0025516:40169-40188 Msa1423230:intron 35.0%
AATTTCATGTGCAAGTTAGG+TGG + tig0025516:40221-40240 Msa1423230:intron 35.0%
CATTACCATCATCTGCAAAA+TGG - tig0025516:40603-40622 None:intergenic 35.0%
GTAATTTCTACACCATCACT+TGG - tig0025516:40640-40659 None:intergenic 35.0%
! AGTTTGCTTCCTTACTAACT+TGG - tig0025516:40759-40778 None:intergenic 35.0%
! AGTGTGTTATTGTTCTTCCT+TGG + tig0025516:40890-40909 Msa1423230:intron 35.0%
! TTTTCTTTCTAAATCGAGGG+AGG + tig0025516:41167-41186 Msa1423230:intron 35.0%
TTTCTTTCTAAATCGAGGGA+GGG + tig0025516:41168-41187 Msa1423230:intron 35.0%
!! GTTTGACCTTGTCACTTTAA+GGG - tig0025516:41265-41284 None:intergenic 35.0%
!! AGTTTGACCTTGTCACTTTA+AGG - tig0025516:41266-41285 None:intergenic 35.0%
TACAAACTTGGGTAGAACTT+TGG + tig0025516:41321-41340 Msa1423230:intron 35.0%
TTCACAACAACAAACTGAAG+TGG - tig0025516:41431-41450 None:intergenic 35.0%
!! ACTTCAGTTTGTTGTTGTGA+AGG + tig0025516:41430-41449 Msa1423230:CDS 35.0%
AGATTGAAAGTAACCATTGC+AGG + tig0025516:41481-41500 Msa1423230:intron 35.0%
GGATCACACCAGAAATTAAA+AGG + tig0025516:41502-41521 Msa1423230:intron 35.0%
ATGAAATGATACTCCCACTA+TGG + tig0025516:41662-41681 Msa1423230:intron 35.0%
TGAAATGATACTCCCACTAT+GGG + tig0025516:41663-41682 Msa1423230:intron 35.0%
AAGCCTATCCAAGATTCATA+AGG + tig0025516:41819-41838 Msa1423230:intron 35.0%
TGACCTTATGAATCTTGGAT+AGG - tig0025516:41825-41844 None:intergenic 35.0%
GTCTCACATTGAATATGATC+TGG + tig0025516:41934-41953 Msa1423230:intron 35.0%
GGAATTGAAAACATACTTCC+AGG - tig0025516:41960-41979 None:intergenic 35.0%
!! GTAGGTTTTGTAGTGGAATT+TGG - tig0025516:42021-42040 None:intergenic 35.0%
CAGAGAATGGTGAATAAAGA+CGG - tig0025516:42086-42105 None:intergenic 35.0%
GGAAAAGGGAAAGAAATAGA+GGG - tig0025516:42138-42157 None:intergenic 35.0%
AACAAGTCTATAAAAGGAGG+GGG - tig0025516:42159-42178 None:intergenic 35.0%
CTACTAGTATTCACAGAGTA+GGG - tig0025516:42243-42262 None:intergenic 35.0%
ACTACTAGTATTCACAGAGT+AGG - tig0025516:42244-42263 None:intergenic 35.0%
TGAGAATGGGATGTTTCAAA+TGG + tig0025516:42354-42373 Msa1423230:CDS 35.0%
! AAATGGCTGATGATGTAAGT+AGG + tig0025516:42371-42390 Msa1423230:intron 35.0%
CTCAGAAAAAGGAGTAAAAG+GGG - tig0025516:42500-42519 None:intergenic 35.0%
! ACAAAAGGTTGTCCAGATTT+TGG + tig0025516:42535-42554 Msa1423230:intron 35.0%
TGCATACGAGAAACAAAAGT+TGG - tig0025516:42594-42613 None:intergenic 35.0%
GCTTGTGATTTAATCTGCTA+AGG + tig0025516:42695-42714 Msa1423230:intron 35.0%
! TGACTTTTGCAACACACTTA+TGG - tig0025516:42890-42909 None:intergenic 35.0%
TAGGAAACACAACACAAACA+TGG - tig0025516:43025-43044 None:intergenic 35.0%
TGCACTTATTGAAGCAATGA+TGG + tig0025516:43059-43078 Msa1423230:CDS 35.0%
AAATAGATTGACTGTGCTCT+TGG + tig0025516:43307-43326 Msa1423230:three_prime_UTR 35.0%
AAAAGGGGAAAAAGGGAGTA+TGG + tig0025516:37702-37721 Msa1423230:exon 40.0%
GAAGAAGAAGAAGAAGAAGG+AGG - tig0025516:37886-37905 None:intergenic 40.0%
GAGGAAGAAGAAGAAGAAGA+AGG - tig0025516:37889-37908 None:intergenic 40.0%
CTTCAGTTGAAACTGAGGAT+TGG + tig0025516:37938-37957 Msa1423230:CDS 40.0%
! TCACCATAGTGAGTATTGCT+TGG + tig0025516:38157-38176 Msa1423230:intron 40.0%
GAACCAAGCAATACTCACTA+TGG - tig0025516:38163-38182 None:intergenic 40.0%
TCCTATGAATAACCTTCCGT+TGG + tig0025516:38255-38274 Msa1423230:CDS 40.0%
TCCAACGGAAGGTTATTCAT+AGG - tig0025516:38259-38278 None:intergenic 40.0%
!! TGAATGTATGTTGCTTTGCC+CGG + tig0025516:38318-38337 Msa1423230:CDS 40.0%
GTGCTCTTCAATATTTGCAC+AGG - tig0025516:38451-38470 None:intergenic 40.0%
! ATATTGAAGAGCACACCTGA+TGG + tig0025516:38457-38476 Msa1423230:CDS 40.0%
!! AAAAGGCGCTAAACAACAGT+TGG - tig0025516:38696-38715 None:intergenic 40.0%
TACTCATTCATCACAGTCAC+AGG + tig0025516:39027-39046 Msa1423230:intron 40.0%
ACTCATTCATCACAGTCACA+GGG + tig0025516:39028-39047 Msa1423230:intron 40.0%
! TCGCTGATCTAAAACACAGA+AGG - tig0025516:39365-39384 None:intergenic 40.0%
!! TTCTGTGTTTTAGATCAGCG+AGG + tig0025516:39364-39383 Msa1423230:intron 40.0%
! CACATGCATCTTGTTTACAG+CGG + tig0025516:39437-39456 Msa1423230:CDS 40.0%
! ACATGCATCTTGTTTACAGC+GGG + tig0025516:39438-39457 Msa1423230:CDS 40.0%
CTGTGTAACAGTACCTGATA+TGG - tig0025516:39542-39561 None:intergenic 40.0%
GATATACTTGACTTCCACAC+AGG + tig0025516:39591-39610 Msa1423230:CDS 40.0%
! ATAAGGAGATGTTTGGGACT+TGG + tig0025516:39964-39983 Msa1423230:intron 40.0%
! TAAGGAGATGTTTGGGACTT+GGG + tig0025516:39965-39984 Msa1423230:intron 40.0%
TCACAATCAGACATGACAGT+TGG - tig0025516:40417-40436 None:intergenic 40.0%
! TGCAGATGATGGTAATGAAG+TGG + tig0025516:40606-40625 Msa1423230:intron 40.0%
! GATGATGGTAATGAAGTGGA+TGG + tig0025516:40610-40629 Msa1423230:intron 40.0%
AAACAAAAGCAACACTGGTG+CGG - tig0025516:40925-40944 None:intergenic 40.0%
ATGGGAAACAAAAGCAACAC+TGG - tig0025516:40930-40949 None:intergenic 40.0%
!! TCAAGTCTTTTGGAAGATCG+TGG + tig0025516:40959-40978 Msa1423230:intron 40.0%
TTCTTTCTAAATCGAGGGAG+GGG + tig0025516:41169-41188 Msa1423230:intron 40.0%
GTTCTACCCAAGTTTGTATC+AGG - tig0025516:41319-41338 None:intergenic 40.0%
ACAAACTGAAGTGGTTCAGA+TGG - tig0025516:41422-41441 None:intergenic 40.0%
CTTTCAGAAGCTTGTACAAG+TGG - tig0025516:41463-41482 None:intergenic 40.0%
AAGAGGTTCTTCTCTCTTCT+AGG + tig0025516:41560-41579 Msa1423230:intron 40.0%
! ACGAACACAGAATTTGGGTT+GGG - tig0025516:41795-41814 None:intergenic 40.0%
TACGAACACAGAATTTGGGT+TGG - tig0025516:41796-41815 None:intergenic 40.0%
AGAGGTGACCTTATGAATCT+TGG - tig0025516:41830-41849 None:intergenic 40.0%
ACGATAGCAGTAACTGATAG+AGG - tig0025516:41848-41867 None:intergenic 40.0%
ACATTGAATATGATCTGGCC+TGG + tig0025516:41939-41958 Msa1423230:intron 40.0%
TGAGAGTCGTTCTCATTTCT+AGG - tig0025516:41981-42000 None:intergenic 40.0%
!!! AAGGTTGGTAGGTTTTGTAG+TGG - tig0025516:42028-42047 None:intergenic 40.0%
ATATATAGGAGAATTGGCGC+AGG - tig0025516:42055-42074 None:intergenic 40.0%
GGGAAAAGGGAAAGAAATAG+AGG - tig0025516:42139-42158 None:intergenic 40.0%
CTATAAAAGGAGGGGGAAAA+GGG - tig0025516:42152-42171 None:intergenic 40.0%
TCTATAAAAGGAGGGGGAAA+AGG - tig0025516:42153-42172 None:intergenic 40.0%
ATAATGCCACTGTTCTCCAA+TGG - tig0025516:42199-42218 None:intergenic 40.0%
! AACTTGGCCTTTATTTGTGC+AGG + tig0025516:42330-42349 Msa1423230:intron 40.0%
! ACTTGGCCTTTATTTGTGCA+GGG + tig0025516:42331-42350 Msa1423230:intron 40.0%
TTCTCACCCTGCACAAATAA+AGG - tig0025516:42340-42359 None:intergenic 40.0%
TTATTTGTGCAGGGTGAGAA+TGG + tig0025516:42340-42359 Msa1423230:intron 40.0%
TATTTGTGCAGGGTGAGAAT+GGG + tig0025516:42341-42360 Msa1423230:intron 40.0%
!! ATCAGAGTGCCACTTACAAA+AGG + tig0025516:42520-42539 Msa1423230:intron 40.0%
! TCTGGACAACCTTTTGTAAG+TGG - tig0025516:42532-42551 None:intergenic 40.0%
CTAAGGCAACATTTGTGAAC+AGG + tig0025516:42712-42731 Msa1423230:intron 40.0%
AAATTCAGTCTCCTCGTCTA+TGG - tig0025516:42768-42787 None:intergenic 40.0%
GGAGACTGAATTTAATGCCT+TGG + tig0025516:42775-42794 Msa1423230:CDS 40.0%
GACTGAATTTAATGCCTTGG+TGG + tig0025516:42778-42797 Msa1423230:CDS 40.0%
AATGAAGTCACATACCACCA+AGG - tig0025516:42795-42814 None:intergenic 40.0%
GTTTGTGTTGTGTTTCCTAC+AGG + tig0025516:43026-43045 Msa1423230:intron 40.0%
!! GTTGTTACTGGTGTTGCTTC+TGG + tig0025516:38030-38049 Msa1423230:CDS 45.0%
! GTTTTCGTCAATGGCAAACC+CGG - tig0025516:38103-38122 None:intergenic 45.0%
GGGTTTGCCATTGACGAAAA+CGG + tig0025516:38102-38121 Msa1423230:CDS 45.0%
TGGGGTGATGCGAAAATTGA+TGG + tig0025516:38912-38931 Msa1423230:intron 45.0%
!! TGTGTTTTAGATCAGCGAGG+AGG + tig0025516:39367-39386 Msa1423230:intron 45.0%
GAATGCGTTTATCATCACCC+TGG - tig0025516:40498-40517 None:intergenic 45.0%
TCTTTCTAAATCGAGGGAGG+GGG + tig0025516:41170-41189 Msa1423230:intron 45.0%
AAGGACTTCAAATCTCGTCG+GGG - tig0025516:41242-41261 None:intergenic 45.0%
GAAGGACTTCAAATCTCGTC+GGG - tig0025516:41243-41262 None:intergenic 45.0%
GGAAGGACTTCAAATCTCGT+CGG - tig0025516:41244-41263 None:intergenic 45.0%
GTCCTTCCCTTAAAGTGACA+AGG + tig0025516:41256-41275 Msa1423230:intron 45.0%
!! GACCTTGTCACTTTAAGGGA+AGG - tig0025516:41261-41280 None:intergenic 45.0%
AGACGGCCTGATACAAACTT+GGG + tig0025516:41310-41329 Msa1423230:intron 45.0%
! TTTCTGGTGTGATCCTGCAA+TGG - tig0025516:41497-41516 None:intergenic 45.0%
CATTTGGAAGGTGACTTGAG+TGG - tig0025516:41872-41891 None:intergenic 45.0%
ACCTTCCAAATGTTCAGTCC+TGG + tig0025516:41880-41899 Msa1423230:intron 45.0%
TCCAGGACTGAACATTTGGA+AGG - tig0025516:41884-41903 None:intergenic 45.0%
CATGTCCAGGACTGAACATT+TGG - tig0025516:41888-41907 None:intergenic 45.0%
AATGTTCAGTCCTGGACATG+AGG + tig0025516:41888-41907 Msa1423230:intron 45.0%
ATGTTCAGTCCTGGACATGA+GGG + tig0025516:41889-41908 Msa1423230:intron 45.0%
! TGTAGTGGAATTTGGGACTG+CGG - tig0025516:42013-42032 None:intergenic 45.0%
GAAAGAAATAGAGGGAGTCG+GGG - tig0025516:42130-42149 None:intergenic 45.0%
GGAAAGAAATAGAGGGAGTC+GGG - tig0025516:42131-42150 None:intergenic 45.0%
GGGAAAGAAATAGAGGGAGT+CGG - tig0025516:42132-42151 None:intergenic 45.0%
AAGATGCCTGTCATTGCCAT+TGG + tig0025516:42180-42199 Msa1423230:intron 45.0%
TGTTCTCCAATGGCAATGAC+AGG - tig0025516:42189-42208 None:intergenic 45.0%
TCATTGCCATTGGAGAACAG+TGG + tig0025516:42190-42209 Msa1423230:intron 45.0%
GGCACTCTGATCTCAGAAAA+AGG - tig0025516:42511-42530 None:intergenic 45.0%
! GCCTTAATATTTTCCGGCTG+TGG + tig0025516:42560-42579 Msa1423230:intron 45.0%
GCCACAGCCGGAAAATATTA+AGG - tig0025516:42564-42583 None:intergenic 45.0%
CATTTGTGAACAGGACTTGC+TGG + tig0025516:42721-42740 Msa1423230:intron 45.0%
GCTCAGGTCAATGAGCAAAT+TGG - tig0025516:43344-43363 None:intergenic 45.0%
TTTGCTCATTGACCTGAGCA+CGG + tig0025516:43345-43364 Msa1423230:three_prime_UTR 45.0%
!! TAGAAAAAAAAAAAAAAAAA+GGG - tig0025516:39307-39326 None:intergenic 5.0%
AATTGCAACTGCTGCTGCTG+AGG - tig0025516:37740-37759 None:intergenic 50.0%
TCCTGATGATATGCCGTTGC+CGG + tig0025516:38068-38087 Msa1423230:CDS 50.0%
TAACCTTCCGTTGGAGTGTG+TGG + tig0025516:38264-38283 Msa1423230:CDS 50.0%
TTCCGTTGGAGTGTGTGGTT+CGG + tig0025516:38269-38288 Msa1423230:CDS 50.0%
! TGAAGAGCACACCTGATGGA+TGG + tig0025516:38461-38480 Msa1423230:CDS 50.0%
CTTACAGCTGACCATCCATC+AGG - tig0025516:38475-38494 None:intergenic 50.0%
! AGGTACTGTTACACAGCACG+TGG + tig0025516:39546-39565 Msa1423230:intron 50.0%
TACTGTTACACAGCACGTGG+CGG + tig0025516:39549-39568 Msa1423230:CDS 50.0%
TGGTGCGGTAATACAGACCA+AGG - tig0025516:40910-40929 None:intergenic 50.0%
GAAGCGTGACAAAGGAACCT+CGG + tig0025516:41130-41149 Msa1423230:intron 50.0%
AAGCGTGACAAAGGAACCTC+GGG + tig0025516:41131-41150 Msa1423230:intron 50.0%
AAAAGTCTGCATCAAGCCCG+AGG - tig0025516:41150-41169 None:intergenic 50.0%
CAGACGGCCTGATACAAACT+TGG + tig0025516:41309-41328 Msa1423230:intron 50.0%
ACACAATCTCCCTCATGTCC+AGG - tig0025516:41901-41920 None:intergenic 50.0%
TATAGGAGAATTGGCGCAGG+AGG - tig0025516:42052-42071 None:intergenic 50.0%
TCTATGGCGTCAATGACAGC+AGG - tig0025516:42752-42771 None:intergenic 50.0%
TGTCATTGACGCCATAGACG+AGG + tig0025516:42754-42773 Msa1423230:CDS 50.0%
GTGCAGCTTCTTCTTCCTGT+AGG - tig0025516:43044-43063 None:intergenic 50.0%
CGGTAAAATCAACCGTGCTC+AGG - tig0025516:43360-43379 None:intergenic 50.0%
TCCGGCAACGGCATATCATC+AGG - tig0025516:38072-38091 None:intergenic 55.0%
TCGTCAATGGCAAACCCGGT+GGG - tig0025516:38099-38118 None:intergenic 55.0%
TTCGTCAATGGCAAACCCGG+TGG - tig0025516:38100-38119 None:intergenic 55.0%
GAACCACACACTCCAACGGA+AGG - tig0025516:38270-38289 None:intergenic 55.0%
CTCCGAACCACACACTCCAA+CGG - tig0025516:38274-38293 None:intergenic 55.0%
! GTGGATGGCTTGCCAAGTGA+TGG + tig0025516:40625-40644 Msa1423230:CDS 55.0%
! TCTGCGAGGTGTCAACTCAG+TGG - tig0025516:41293-41312 None:intergenic 55.0%
! CTGAGTTGACACCTCGCAGA+CGG + tig0025516:41293-41312 Msa1423230:intron 55.0%
TTTGTATCAGGCCGTCTGCG+AGG - tig0025516:41307-41326 None:intergenic 55.0%
ATTGGCGCAGGAGGAAAGGT+TGG - tig0025516:42043-42062 None:intergenic 55.0%
GAGAATTGGCGCAGGAGGAA+AGG - tig0025516:42047-42066 None:intergenic 55.0%
GGACAGATGGGAGCAGAGAA+TGG - tig0025516:42099-42118 None:intergenic 55.0%
GGGGTGCAATGAGGACAGAT+GGG - tig0025516:42111-42130 None:intergenic 55.0%
TCAATGGCAAACCCGGTGGG+AGG - tig0025516:38096-38115 None:intergenic 60.0%
! GCGCAGGAGGAAAGGTTGGT+AGG - tig0025516:42039-42058 None:intergenic 60.0%
CGGGGTGCAATGAGGACAGA+TGG - tig0025516:42112-42131 None:intergenic 60.0%
GTTGGAACGCATGCCACAGC+CGG - tig0025516:42576-42595 None:intergenic 60.0%
GCAAACCCGGTGGGAGGTTC+CGG - tig0025516:38090-38109 None:intergenic 65.0%
GAGGGAGTCGGGGTGCAATG+AGG - tig0025516:42120-42139 None:intergenic 65.0%
CCGGTGGGAGGTTCCGGCAA+CGG - tig0025516:38084-38103 None:intergenic 70.0%
CCGTTGCCGGAACCTCCCAC+CGG + tig0025516:38081-38100 Msa1423230:CDS 70.0%
CGTTGCCGGAACCTCCCACC+GGG + tig0025516:38082-38101 Msa1423230:CDS 70.0%
GCGAGCGCATACGCTGCAGC+AGG - tig0025516:39410-39429 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0025516 gene 37672 43478 37672 ID=Msa1423230;Name=Msa1423230
tig0025516 mRNA 37672 43478 37672 ID=Msa1423230-mRNA-1;Parent=Msa1423230;Name=Msa1423230-mRNA-1;_AED=0.09;_eAED=0.09;_QI=49|1|1|1|0.9|0.81|11|352|336
tig0025516 exon 37672 38164 37672 ID=Msa1423230-mRNA-1:exon:3087;Parent=Msa1423230-mRNA-1
tig0025516 exon 38250 38347 38250 ID=Msa1423230-mRNA-1:exon:3088;Parent=Msa1423230-mRNA-1
tig0025516 exon 38447 38489 38447 ID=Msa1423230-mRNA-1:exon:3089;Parent=Msa1423230-mRNA-1
tig0025516 exon 39377 39459 39377 ID=Msa1423230-mRNA-1:exon:3090;Parent=Msa1423230-mRNA-1
tig0025516 exon 39548 39612 39548 ID=Msa1423230-mRNA-1:exon:3091;Parent=Msa1423230-mRNA-1
tig0025516 exon 40611 40672 40611 ID=Msa1423230-mRNA-1:exon:3092;Parent=Msa1423230-mRNA-1
tig0025516 exon 41392 41451 41392 ID=Msa1423230-mRNA-1:exon:3093;Parent=Msa1423230-mRNA-1
tig0025516 exon 42352 42384 42352 ID=Msa1423230-mRNA-1:exon:3094;Parent=Msa1423230-mRNA-1
tig0025516 exon 42734 42799 42734 ID=Msa1423230-mRNA-1:exon:3095;Parent=Msa1423230-mRNA-1
tig0025516 exon 43048 43398 43048 ID=Msa1423230-mRNA-1:exon:3096;Parent=Msa1423230-mRNA-1
tig0025516 exon 43421 43478 43421 ID=Msa1423230-mRNA-1:exon:3097;Parent=Msa1423230-mRNA-1
tig0025516 five_prime_UTR 37672 37720 37672 ID=Msa1423230-mRNA-1:five_prime_utr;Parent=Msa1423230-mRNA-1
tig0025516 CDS 37721 38164 37721 ID=Msa1423230-mRNA-1:cds;Parent=Msa1423230-mRNA-1
tig0025516 CDS 38250 38347 38250 ID=Msa1423230-mRNA-1:cds;Parent=Msa1423230-mRNA-1
tig0025516 CDS 38447 38489 38447 ID=Msa1423230-mRNA-1:cds;Parent=Msa1423230-mRNA-1
tig0025516 CDS 39377 39459 39377 ID=Msa1423230-mRNA-1:cds;Parent=Msa1423230-mRNA-1
tig0025516 CDS 39548 39612 39548 ID=Msa1423230-mRNA-1:cds;Parent=Msa1423230-mRNA-1
tig0025516 CDS 40611 40672 40611 ID=Msa1423230-mRNA-1:cds;Parent=Msa1423230-mRNA-1
tig0025516 CDS 41392 41451 41392 ID=Msa1423230-mRNA-1:cds;Parent=Msa1423230-mRNA-1
tig0025516 CDS 42352 42384 42352 ID=Msa1423230-mRNA-1:cds;Parent=Msa1423230-mRNA-1
tig0025516 CDS 42734 42799 42734 ID=Msa1423230-mRNA-1:cds;Parent=Msa1423230-mRNA-1
tig0025516 CDS 43048 43104 43048 ID=Msa1423230-mRNA-1:cds;Parent=Msa1423230-mRNA-1
tig0025516 three_prime_UTR 43105 43398 43105 ID=Msa1423230-mRNA-1:three_prime_utr;Parent=Msa1423230-mRNA-1
tig0025516 three_prime_UTR 43421 43478 43421 ID=Msa1423230-mRNA-1:three_prime_utr;Parent=Msa1423230-mRNA-1
Gene Sequence

>Msa1423230

ATGGCGCTACGTTGCTCCTCAGCAGCAGCAGTTGCAATTTTCAAATCTTGTGTCTCTCTAAAATCACACATATTTCCAATTTCAGTTTCATTTCAAAACCTTAATTCTCATTCCAATTCTTCTACAATTTTCTGTACTGCAACCAAATCACAGAAAAATTCTCCTCCTTCTTCTTCTTCTTCTTCCTCCAAAAAGAAGACGAAGAAAAGGAAGAATTCTTCAGTTGAAACTGAGGATTGGAAAAATTTGAATTCCAATACTGATTTTGAATTATTGCGTGATTTTTCTGCGGATAATGATGTTCAAAATGTTGTTACTGGTGTTGCTTCTGGTTCCTCTTTATTTTATCCTGATGATATGCCGTTGCCGGAACCTCCCACCGGGTTTGCCATTGACGAAAACGGTGAAATTCTGCTTACTTCAACAAATCGGCTTATCACCATAGTTGATCCTATGAATAACCTTCCGTTGGAGTGTGTGGTTCGGAGAATGTTCAAGAGTTCTGATAGAGATGAATGTATGTTGCTTTGCCCGGTTGACACGCCTGTGCAAATATTGAAGAGCACACCTGATGGATGGTCAGCTATCAGCGAGGAGGAAGTTGAATCTATTCTGCCTGCTGCAGCGTATGCGCTCGCCAAGATACACATGCATCTTGTTTACAGCGGGTACTGTTACACAGCACGTGGCGGTTTTTGCTACACAGAACAAGATATACTTGACTTCCACACAGATGATGGTAATGAAGTGGATGGCTTGCCAAGTGATGGTGTAGAAATTACATATTTTGATCTGGAAGATACTCGCTACATGATTTATACACCATCTGAACCACTTCAGTTTGTTGTTGTGAAGGGTGAGAATGGGATGTTTCAAATGGCTGATGATGACTTGCTGGATGATCCTGCTGTCATTGACGCCATAGACGAGGAGACTGAATTTAATGCCTTGGTGGAAGAAGAAGCTGCACTTATTGAAGCAATGATGGATGAAAGCAATGATGATGAATGA

Protein sequence

>Msa1423230

MALRCSSAAAVAIFKSCVSLKSHIFPISVSFQNLNSHSNSSTIFCTATKSQKNSPPSSSSSSSKKKTKKRKNSSVETEDWKNLNSNTDFELLRDFSADNDVQNVVTGVASGSSLFYPDDMPLPEPPTGFAIDENGEILLTSTNRLITIVDPMNNLPLECVVRRMFKSSDRDECMLLCPVDTPVQILKSTPDGWSAISEEEVESILPAAAYALAKIHMHLVYSGYCYTARGGFCYTEQDILDFHTDDGNEVDGLPSDGVEITYFDLEDTRYMIYTPSEPLQFVVVKGENGMFQMADDDLLDDPAVIDAIDEETEFNALVEEEAALIEAMMDESNDDE*