Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439030 | XP_003630314.1 | 79.817 | 218 | 43 | 1 | 1 | 218 | 116 | 332 | 7.55e-109 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439030 | G7LEY0 | 79.817 | 218 | 43 | 1 | 1 | 218 | 116 | 332 | 3.60e-109 | 326 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008850 | Msa1439030 | 0.833972 | 3.922703e-56 | -8.615850e-47 |
| Msa0018870 | Msa1439030 | 0.801450 | 8.951471e-49 | -8.615850e-47 |
| Msa0020630 | Msa1439030 | 0.837740 | 4.348870e-57 | -8.615850e-47 |
| Msa0040410 | Msa1439030 | 0.808812 | 2.576301e-50 | -8.615850e-47 |
| Msa0047470 | Msa1439030 | 0.829269 | 5.656806e-55 | -8.615850e-47 |
| Msa0051100 | Msa1439030 | 0.801166 | 1.023459e-48 | -8.615850e-47 |
| Msa0054760 | Msa1439030 | 0.815207 | 1.040269e-51 | -8.615850e-47 |
| Msa0064550 | Msa1439030 | 0.804848 | 1.773961e-49 | -8.615850e-47 |
| Msa0068410 | Msa1439030 | 0.806830 | 6.799005e-50 | -8.615850e-47 |
| Msa0084680 | Msa1439030 | 0.826451 | 2.693681e-54 | -8.615850e-47 |
| Msa0091480 | Msa1439030 | 0.802625 | 5.133021e-49 | -8.615850e-47 |
| Msa0101060 | Msa1439030 | 0.804820 | 1.797976e-49 | -8.615850e-47 |
| Msa0103060 | Msa1439030 | 0.802150 | 6.431875e-49 | -8.615850e-47 |
| Msa0103160 | Msa1439030 | 0.821216 | 4.542705e-53 | -8.615850e-47 |
| Msa0114240 | Msa1439030 | 0.806764 | 7.022212e-50 | -8.615850e-47 |
| Msa0114250 | Msa1439030 | 0.818191 | 2.229935e-52 | -8.615850e-47 |
| Msa1347290 | Msa1439030 | 0.800450 | 1.432858e-48 | -8.615850e-47 |
| Msa1347620 | Msa1439030 | 0.812665 | 3.781961e-51 | -8.615850e-47 |
| Msa1359620 | Msa1439030 | 0.804975 | 1.668519e-49 | -8.615850e-47 |
| Msa1376350 | Msa1439030 | 0.809570 | 1.772424e-50 | -8.615850e-47 |
| Msa1380720 | Msa1439030 | 0.806743 | 7.093881e-50 | -8.615850e-47 |
| Msa1381130 | Msa1439030 | 0.807648 | 4.562594e-50 | -8.615850e-47 |
| Msa1397540 | Msa1439030 | 0.804287 | 2.322800e-49 | -8.615850e-47 |
| Msa1403700 | Msa1439030 | 0.800994 | 1.109851e-48 | -8.615850e-47 |
| Msa1407210 | Msa1439030 | -0.816144 | 6.432336e-52 | -8.615850e-47 |
| Msa1418200 | Msa1439030 | 0.827396 | 1.600738e-54 | -8.615850e-47 |
| Msa1421870 | Msa1439030 | 0.810410 | 1.168691e-50 | -8.615850e-47 |
| Msa1423230 | Msa1439030 | 0.839578 | 1.457273e-57 | -8.615850e-47 |
| Msa1428420 | Msa1439030 | 0.820286 | 7.433047e-53 | -8.615850e-47 |
| Msa1428440 | Msa1439030 | 0.836708 | 7.986453e-57 | -8.615850e-47 |
| Msa1439030 | Msa1440180 | 0.830046 | 3.660244e-55 | -8.615850e-47 |
| Msa1439030 | Msa1447560 | 0.812745 | 3.631895e-51 | -8.615850e-47 |
| Msa1439030 | Msa1449600 | 0.819856 | 9.322395e-53 | -8.615850e-47 |
| Msa1439030 | Msa1449740 | 0.828531 | 8.535941e-55 | -8.615850e-47 |
| Msa1439030 | Msa1450020 | 0.806614 | 7.551471e-50 | -8.615850e-47 |
| Msa1439030 | Msa1458920 | 0.813870 | 2.056409e-51 | -8.615850e-47 |
| Msa0607300 | Msa1439030 | 0.832086 | 1.155275e-55 | -8.615850e-47 |
| Msa0609990 | Msa1439030 | 0.800938 | 1.139496e-48 | -8.615850e-47 |
| Msa0619330 | Msa1439030 | 0.811572 | 6.547042e-51 | -8.615850e-47 |
| Msa0619350 | Msa1439030 | 0.813333 | 2.698729e-51 | -8.615850e-47 |
| Msa0628100 | Msa1439030 | 0.812461 | 4.189928e-51 | -8.615850e-47 |
| Msa0633720 | Msa1439030 | 0.806603 | 7.590447e-50 | -8.615850e-47 |
| Msa0647000 | Msa1439030 | 0.803367 | 3.605836e-49 | -8.615850e-47 |
| Msa0650360 | Msa1439030 | 0.809846 | 1.546328e-50 | -8.615850e-47 |
| Msa0656270 | Msa1439030 | 0.803811 | 2.917409e-49 | -8.615850e-47 |
| Msa0659040 | Msa1439030 | 0.807736 | 4.368573e-50 | -8.615850e-47 |
| Msa0659480 | Msa1439030 | 0.846109 | 2.669056e-59 | -8.615850e-47 |
| Msa0667970 | Msa1439030 | 0.807091 | 5.987471e-50 | -8.615850e-47 |
| Msa0690350 | Msa1439030 | 0.823369 | 1.437469e-53 | -8.615850e-47 |
| Msa0707780 | Msa1439030 | 0.809355 | 1.970909e-50 | -8.615850e-47 |
| Msa0714600 | Msa1439030 | 0.843161 | 1.660868e-58 | -8.615850e-47 |
| Msa0724050 | Msa1439030 | 0.845123 | 4.940575e-59 | -8.615850e-47 |
| Msa0733000 | Msa1439030 | 0.819372 | 1.202096e-52 | -8.615850e-47 |
| Msa0739610 | Msa1439030 | 0.811090 | 8.330251e-51 | -8.615850e-47 |
| Msa0750380 | Msa1439030 | 0.810366 | 1.194596e-50 | -8.615850e-47 |
| Msa0763880 | Msa1439030 | 0.837335 | 5.523897e-57 | -8.615850e-47 |
| Msa0763910 | Msa1439030 | 0.830533 | 2.784477e-55 | -8.615850e-47 |
| Msa0769830 | Msa1439030 | 0.805313 | 1.417855e-49 | -8.615850e-47 |
| Msa0780140 | Msa1439030 | 0.800633 | 1.315159e-48 | -8.615850e-47 |
| Msa0811510 | Msa1439030 | 0.807075 | 6.032822e-50 | -8.615850e-47 |
| Msa0824140 | Msa1439030 | 0.802794 | 4.737442e-49 | -8.615850e-47 |
| Msa0828570 | Msa1439030 | 0.805578 | 1.247833e-49 | -8.615850e-47 |
| Msa0830720 | Msa1439030 | 0.821831 | 3.276270e-53 | -8.615850e-47 |
| Msa0123170 | Msa1439030 | 0.804764 | 1.847216e-49 | -8.615850e-47 |
| Msa0130800 | Msa1439030 | 0.826405 | 2.762254e-54 | -8.615850e-47 |
| Msa0147990 | Msa1439030 | 0.806978 | 6.325519e-50 | -8.615850e-47 |
| Msa0149500 | Msa1439030 | 0.811539 | 6.655726e-51 | -8.615850e-47 |
| Msa0159750 | Msa1439030 | 0.840126 | 1.048730e-57 | -8.615850e-47 |
| Msa0164360 | Msa1439030 | 0.807753 | 4.333820e-50 | -8.615850e-47 |
| Msa0178940 | Msa1439030 | 0.834707 | 2.564507e-56 | -8.615850e-47 |
| Msa0185390 | Msa1439030 | 0.812915 | 3.333512e-51 | -8.615850e-47 |
| Msa0206940 | Msa1439030 | 0.815216 | 1.035588e-51 | -8.615850e-47 |
| Msa0224370 | Msa1439030 | 0.809512 | 1.824047e-50 | -8.615850e-47 |
| Msa0224400 | Msa1439030 | 0.800528 | 1.381313e-48 | -8.615850e-47 |
| Msa1233770 | Msa1439030 | 0.833113 | 6.426269e-56 | -8.615850e-47 |
| Msa1262310 | Msa1439030 | 0.837473 | 5.090479e-57 | -8.615850e-47 |
| Msa1264560 | Msa1439030 | 0.823569 | 1.290768e-53 | -8.615850e-47 |
| Msa1276080 | Msa1439030 | 0.832198 | 1.084014e-55 | -8.615850e-47 |
| Msa1282210 | Msa1439030 | 0.800901 | 1.159337e-48 | -8.615850e-47 |
| Msa1287160 | Msa1439030 | 0.803028 | 4.238870e-49 | -8.615850e-47 |
| Msa1287340 | Msa1439030 | 0.804233 | 2.383762e-49 | -8.615850e-47 |
| Msa1306200 | Msa1439030 | 0.828434 | 9.010562e-55 | -8.615850e-47 |
| Msa1317030 | Msa1439030 | 0.810680 | 1.022068e-50 | -8.615850e-47 |
| Msa1326000 | Msa1439030 | 0.811216 | 7.823400e-51 | -8.615850e-47 |
| Msa1332140 | Msa1439030 | -0.801463 | 8.898439e-49 | -8.615850e-47 |
| Msa1335970 | Msa1439030 | -0.836384 | 9.658704e-57 | -8.615850e-47 |
| Msa0380430 | Msa1439030 | 0.815227 | 1.029648e-51 | -8.615850e-47 |
| Msa0387790 | Msa1439030 | 0.826258 | 2.994066e-54 | -8.615850e-47 |
| Msa0389060 | Msa1439030 | 0.803436 | 3.488981e-49 | -8.615850e-47 |
| Msa0396970 | Msa1439030 | 0.805310 | 1.419791e-49 | -8.615850e-47 |
| Msa0401340 | Msa1439030 | 0.817294 | 3.553789e-52 | -8.615850e-47 |
| Msa0413740 | Msa1439030 | 0.818451 | 1.946511e-52 | -8.615850e-47 |
| Msa0421800 | Msa1439030 | 0.808186 | 3.504980e-50 | -8.615850e-47 |
| Msa0423600 | Msa1439030 | 0.828631 | 8.077269e-55 | -8.615850e-47 |
| Msa0431520 | Msa1439030 | 0.812205 | 4.767416e-51 | -8.615850e-47 |
| Msa0431830 | Msa1439030 | 0.800648 | 1.306105e-48 | -8.615850e-47 |
| Msa0448080 | Msa1439030 | 0.815299 | 9.926106e-52 | -8.615850e-47 |
| Msa0448120 | Msa1439030 | 0.812979 | 3.227134e-51 | -8.615850e-47 |
| Msa0458790 | Msa1439030 | 0.825997 | 3.453737e-54 | -8.615850e-47 |
| Msa0469270 | Msa1439030 | 0.809997 | 1.434734e-50 | -8.615850e-47 |
| Msa1001780 | Msa1439030 | 0.814669 | 1.369775e-51 | -8.615850e-47 |
| Msa1014350 | Msa1439030 | 0.809357 | 1.969086e-50 | -8.615850e-47 |
| Msa1016110 | Msa1439030 | 0.810016 | 1.421357e-50 | -8.615850e-47 |
| Msa1030430 | Msa1439030 | 0.805005 | 1.645111e-49 | -8.615850e-47 |
| Msa1036250 | Msa1439030 | 0.803045 | 4.204075e-49 | -8.615850e-47 |
| Msa1037060 | Msa1439030 | -0.803662 | 3.132376e-49 | -8.615850e-47 |
| Msa1038320 | Msa1439030 | 0.859515 | 3.920615e-63 | -8.615850e-47 |
| Msa1040730 | Msa1439030 | -0.806003 | 1.015606e-49 | -8.615850e-47 |
| Msa1043870 | Msa1439030 | 0.801958 | 7.044260e-49 | -8.615850e-47 |
| Msa1054890 | Msa1439030 | 0.809114 | 2.220194e-50 | -8.615850e-47 |
| Msa1055360 | Msa1439030 | 0.819945 | 8.894623e-53 | -8.615850e-47 |
| Msa1064210 | Msa1439030 | 0.816448 | 5.501546e-52 | -8.615850e-47 |
| Msa1076520 | Msa1439030 | 0.803191 | 3.922139e-49 | -8.615850e-47 |
| Msa1079610 | Msa1439030 | 0.805824 | 1.107819e-49 | -8.615850e-47 |
| Msa1080620 | Msa1439030 | 0.800343 | 1.506809e-48 | -8.615850e-47 |
| Msa1081700 | Msa1439030 | 0.825120 | 5.572631e-54 | -8.615850e-47 |
| Msa1082150 | Msa1439030 | 0.804830 | 1.789728e-49 | -8.615850e-47 |
| Msa1093390 | Msa1439030 | 0.815935 | 7.163350e-52 | -8.615850e-47 |
| Msa0240780 | Msa1439030 | 0.800414 | 1.457755e-48 | -8.615850e-47 |
| Msa0251150 | Msa1439030 | 0.804777 | 1.835941e-49 | -8.615850e-47 |
| Msa0265210 | Msa1439030 | 0.805904 | 1.065858e-49 | -8.615850e-47 |
| Msa0265580 | Msa1439030 | 0.822080 | 2.867713e-53 | -8.615850e-47 |
| Msa0282170 | Msa1439030 | 0.814982 | 1.167460e-51 | -8.615850e-47 |
| Msa0282860 | Msa1439030 | 0.803222 | 3.864860e-49 | -8.615850e-47 |
| Msa0288240 | Msa1439030 | 0.817267 | 3.603847e-52 | -8.615850e-47 |
| Msa0296610 | Msa1439030 | 0.808400 | 3.154834e-50 | -8.615850e-47 |
| Msa0298940 | Msa1439030 | 0.814774 | 1.298251e-51 | -8.615850e-47 |
| Msa0303440 | Msa1439030 | 0.823394 | 1.418361e-53 | -8.615850e-47 |
| Msa0303500 | Msa1439030 | 0.828097 | 1.086546e-54 | -8.615850e-47 |
| Msa0312780 | Msa1439030 | 0.802222 | 6.214089e-49 | -8.615850e-47 |
| Msa0323630 | Msa1439030 | 0.814561 | 1.446795e-51 | -8.615850e-47 |
| Msa0333900 | Msa1439030 | 0.803696 | 3.081421e-49 | -8.615850e-47 |
| Msa0336270 | Msa1439030 | 0.827230 | 1.754520e-54 | -8.615850e-47 |
| Msa0354390 | Msa1439030 | 0.808237 | 3.418903e-50 | -8.615850e-47 |
| Msa1122510 | Msa1439030 | 0.804423 | 2.175651e-49 | -8.615850e-47 |
| Msa1130650 | Msa1439030 | 0.844613 | 6.782132e-59 | -8.615850e-47 |
| Msa1130660 | Msa1439030 | 0.818299 | 2.107072e-52 | -8.615850e-47 |
| Msa1130730 | Msa1439030 | 0.833452 | 5.290482e-56 | -8.615850e-47 |
| Msa1140010 | Msa1439030 | 0.823958 | 1.046494e-53 | -8.615850e-47 |
| Msa1142860 | Msa1439030 | -0.800576 | 1.350779e-48 | -8.615850e-47 |
| Msa1161160 | Msa1439030 | 0.807678 | 4.495113e-50 | -8.615850e-47 |
| Msa1164800 | Msa1439030 | -0.803491 | 3.399378e-49 | -8.615850e-47 |
| Msa1166180 | Msa1439030 | 0.804023 | 2.635052e-49 | -8.615850e-47 |
| Msa1166280 | Msa1439030 | 0.805666 | 1.195786e-49 | -8.615850e-47 |
| Msa1177240 | Msa1439030 | 0.805001 | 1.648107e-49 | -8.615850e-47 |
| Msa1182830 | Msa1439030 | 0.804023 | 2.636114e-49 | -8.615850e-47 |
| Msa1211390 | Msa1439030 | 0.814424 | 1.551915e-51 | -8.615850e-47 |
| Msa1214900 | Msa1439030 | 0.804829 | 1.790485e-49 | -8.615850e-47 |
| Msa1219780 | Msa1439030 | -0.806623 | 7.518841e-50 | -8.615850e-47 |
| Msa1222030 | Msa1439030 | -0.832255 | 1.048985e-55 | -8.615850e-47 |
| Msa0505390 | Msa1439030 | 0.819444 | 1.157996e-52 | -8.615850e-47 |
| Msa0512310 | Msa1439030 | 0.814122 | 1.808866e-51 | -8.615850e-47 |
| Msa0514260 | Msa1439030 | 0.816584 | 5.128885e-52 | -8.615850e-47 |
| Msa0518160 | Msa1439030 | 0.801548 | 8.550022e-49 | -8.615850e-47 |
| Msa0524050 | Msa1439030 | 0.829077 | 6.299496e-55 | -8.615850e-47 |
| Msa0528740 | Msa1439030 | 0.804760 | 1.850357e-49 | -8.615850e-47 |
| Msa0530930 | Msa1439030 | 0.806532 | 7.860554e-50 | -8.615850e-47 |
| Msa0530950 | Msa1439030 | 0.805258 | 1.455698e-49 | -8.615850e-47 |
| Msa0545230 | Msa1439030 | 0.804784 | 1.829160e-49 | -8.615850e-47 |
| Msa0568610 | Msa1439030 | 0.804292 | 2.316970e-49 | -8.615850e-47 |
| Msa0574170 | Msa1439030 | 0.802114 | 6.540999e-49 | -8.615850e-47 |
| Msa0576420 | Msa1439030 | 0.815820 | 7.601159e-52 | -8.615850e-47 |
| Msa0577230 | Msa1439030 | 0.821473 | 3.962611e-53 | -8.615850e-47 |
| Msa0598250 | Msa1439030 | 0.818516 | 1.882139e-52 | -8.615850e-47 |
| Msa0600820 | Msa1439030 | 0.829118 | 6.153936e-55 | -8.615850e-47 |
| Msa0844100 | Msa1439030 | 0.810760 | 9.818560e-51 | -8.615850e-47 |
| Msa0848760 | Msa1439030 | 0.804575 | 2.022271e-49 | -8.615850e-47 |
| Msa0851740 | Msa1439030 | 0.818851 | 1.579899e-52 | -8.615850e-47 |
| Msa0863250 | Msa1439030 | 0.807722 | 4.399197e-50 | -8.615850e-47 |
| Msa0887070 | Msa1439030 | 0.807911 | 4.010110e-50 | -8.615850e-47 |
| Msa0903730 | Msa1439030 | 0.805393 | 1.364296e-49 | -8.615850e-47 |
| Msa0929400 | Msa1439030 | 0.800759 | 1.239831e-48 | -8.615850e-47 |
| Msa0934830 | Msa1439030 | 0.827981 | 1.158629e-54 | -8.615850e-47 |
| Msa0964680 | Msa1439030 | 0.807880 | 4.071606e-50 | -8.615850e-47 |
| Msa0970050 | Msa1439030 | 0.820733 | 5.869394e-53 | -8.615850e-47 |
| Msa0971860 | Msa1439030 | 0.829158 | 6.018086e-55 | -8.615850e-47 |
| Msa0975080 | Msa1439030 | 0.800204 | 1.608120e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439030 | MtrunA17_Chr8g0384691 | 79.817 | 218 | 43 | 1 | 1 | 218 | 116 | 332 | 6.94e-113 | 326 |
| Msa1439030 | MtrunA17_Chr3g0130681 | 52.830 | 212 | 95 | 2 | 3 | 213 | 101 | 308 | 6.33e-75 | 228 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439030 | AT4G33480.1 | 54.930 | 213 | 92 | 3 | 3 | 213 | 124 | 334 | 1.92e-76 | 234 |
Find 72 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGGACCTGTAAAATTAT+AGG | 0.218189 | tig0028698:+11178 | Msa1439030:three_prime_UTR |
| GTTGTTACTGGTGTTGCTTC+TGG | 0.256857 | tig0028698:+5928 | Msa1439030:five_prime_UTR |
| TGTTAGTAATTGTTGTAATC+TGG | 0.263737 | tig0028698:+11113 | Msa1439030:three_prime_UTR |
| AAGAATTGGAATGAGAATTA+AGG | 0.278335 | tig0028698:-5721 | None:intergenic |
| AGTTAGTATTTGTTGTTATC+TGG | 0.290200 | tig0028698:+11064 | Msa1439030:three_prime_UTR |
| TAAGGACCTGTAAAATTATA+GGG | 0.308395 | tig0028698:+11179 | Msa1439030:three_prime_UTR |
| ACAGAAAATTGTAGAAGAAT+TGG | 0.315728 | tig0028698:-5735 | None:intergenic |
| GCAAACCCGGTGGGAGGTTC+CGG | 0.321014 | tig0028698:-5985 | None:intergenic |
| TCCTGATGATATGCCGTTGC+CGG | 0.337706 | tig0028698:+5966 | Msa1439030:exon |
| GATGTTCAAAATGTTGTTAC+TGG | 0.344264 | tig0028698:+5916 | Msa1439030:five_prime_UTR |
| GCTCAGGTCAATGAGAAAAT+TGG | 0.364929 | tig0028698:-11236 | None:intergenic |
| AAATTCAGTCTCCTCGTCTA+TGG | 0.365085 | tig0028698:-10662 | None:intergenic |
| TTAATTACTTACGTGTCAAC+CGG | 0.369775 | tig0028698:-6235 | None:intergenic |
| AAATAGATTGACTGTGCTCT+TGG | 0.399674 | tig0028698:+11202 | Msa1439030:three_prime_UTR |
| CATTTGTGAACAGGACTTGC+TGG | 0.414686 | tig0028698:+10618 | Msa1439030:intron |
| TTCTGCTTACTTCAACAAAT+CGG | 0.416331 | tig0028698:+6028 | Msa1439030:CDS |
| CAATAATTCAAAATCAGTAT+TGG | 0.434374 | tig0028698:-5872 | None:intergenic |
| TTCCGTTGGAGTGTGTGGTT+CGG | 0.440368 | tig0028698:+6167 | Msa1439030:CDS |
| TTATTTGTGCAGGGTGAGAA+TGG | 0.443645 | tig0028698:+10237 | Msa1439030:intron |
| TTGGAGGAAGAAGAAGAAGA+AGG | 0.448446 | tig0028698:-5788 | None:intergenic |
| CTTCAGTTGAAACTGAGGAT+TGG | 0.448739 | tig0028698:+5837 | Msa1439030:five_prime_UTR |
| TCCGGCAACGGCATATCATC+AGG | 0.470462 | tig0028698:-5967 | None:intergenic |
| GGAGACTGAATTTAATGCCT+TGG | 0.472300 | tig0028698:+10672 | Msa1439030:CDS |
| GGCGAGCGCATACGCTGCAC+AGG | 0.477220 | tig0028698:-7304 | None:intergenic |
| TCCAACGGAAGGTTATTCAT+AGG | 0.482809 | tig0028698:-6154 | None:intergenic |
| GGGTTTGCCATTGACGAAAA+CGG | 0.491547 | tig0028698:+6000 | Msa1439030:CDS |
| CCGTTGCCGGAACCTCCCAC+CGG | 0.491708 | tig0028698:+5979 | Msa1439030:CDS |
| CGGTAAAATCAACCGTGCTC+AGG | 0.495598 | tig0028698:-11252 | None:intergenic |
| AACAAGATGCATGTGTATCT+TGG | 0.502259 | tig0028698:-7325 | None:intergenic |
| GACTGAATTTAATGCCTTGG+TGG | 0.506705 | tig0028698:+10675 | Msa1439030:CDS |
| TGAATGTATGTTGCTTTGCC+CGG | 0.514398 | tig0028698:+6216 | Msa1439030:CDS |
| TCCTATGAATAACCTTCCGT+TGG | 0.519345 | tig0028698:+6153 | Msa1439030:CDS |
| GTGCTCTTCAATATTTGCAC+AGG | 0.520741 | tig0028698:-6346 | None:intergenic |
| AAAATTGATCATATACATAG+AGG | 0.521725 | tig0028698:-11155 | None:intergenic |
| AAATTGATCATATACATAGA+GGG | 0.530400 | tig0028698:-11154 | None:intergenic |
| ACTTCAGTTTGTTGTTGTGA+AGG | 0.541807 | tig0028698:+9326 | Msa1439030:CDS |
| ACATGCATCTTGTTTACAGC+GGG | 0.542894 | tig0028698:+7334 | Msa1439030:CDS |
| CCGGTGGGAGGTTCCGGCAA+CGG | 0.543817 | tig0028698:-5979 | None:intergenic |
| TGCACTTATTGAAGCAATGA+TGG | 0.547958 | tig0028698:+10956 | Msa1439030:CDS |
| AATTGCAACTGCTGCTGCTG+AGG | 0.548569 | tig0028698:-5639 | None:intergenic |
| CGTTGCCGGAACCTCCCACC+GGG | 0.548585 | tig0028698:+5980 | Msa1439030:CDS |
| ATCATCAGGATAAAATAAAG+AGG | 0.555773 | tig0028698:-5953 | None:intergenic |
| TATTTGTGCAGGGTGAGAAT+GGG | 0.556129 | tig0028698:+10238 | Msa1439030:intron |
| CTTACAGCTGACCATCCATC+AGG | 0.563519 | tig0028698:-6370 | None:intergenic |
| TAATTACTTACGTGTCAACC+GGG | 0.577475 | tig0028698:-6234 | None:intergenic |
| TCTATGGCGTCAATGACAGC+AGG | 0.580809 | tig0028698:-10646 | None:intergenic |
| TAACCTTCCGTTGGAGTGTG+TGG | 0.581027 | tig0028698:+6162 | Msa1439030:CDS |
| TTCACAACAACAAACTGAAG+TGG | 0.585546 | tig0028698:-9324 | None:intergenic |
| TTCGTCAATGGCAAACCCGG+TGG | 0.591270 | tig0028698:-5995 | None:intergenic |
| AAAACAAAGATAGATGAGAT+CGG | 0.591300 | tig0028698:-11272 | None:intergenic |
| ATATTGAAGAGCACACCTGA+TGG | 0.594346 | tig0028698:+6355 | Msa1439030:CDS |
| TGCAGATGATGGTAATGAAG+TGG | 0.597707 | tig0028698:+8502 | Msa1439030:intron |
| TGAAGAGCACACCTGATGGA+TGG | 0.603729 | tig0028698:+6359 | Msa1439030:CDS |
| TGAGAATGGGATGTTTCAAA+TGG | 0.603878 | tig0028698:+10251 | Msa1439030:CDS |
| GTAATTTCTACACCATCACT+TGG | 0.605477 | tig0028698:-8533 | None:intergenic |
| GTGGATGGCTTGCCAAGTGA+TGG | 0.606609 | tig0028698:+8521 | Msa1439030:CDS |
| GATTACAACAATTACTAACA+AGG | 0.607104 | tig0028698:-11110 | None:intergenic |
| ACAAACTGAAGTGGTTCAGA+TGG | 0.608941 | tig0028698:-9315 | None:intergenic |
| CTCCGAACCACACACTCCAA+CGG | 0.614714 | tig0028698:-6169 | None:intergenic |
| GAATTCTTCAGTTGAAACTG+AGG | 0.615714 | tig0028698:+5832 | Msa1439030:five_prime_UTR |
| TCGTCAATGGCAAACCCGGT+GGG | 0.620091 | tig0028698:-5994 | None:intergenic |
| ATTACAACAATTACTAACAA+GGG | 0.630057 | tig0028698:-11109 | None:intergenic |
| GAACCACACACTCCAACGGA+AGG | 0.636707 | tig0028698:-6165 | None:intergenic |
| CACATGCATCTTGTTTACAG+CGG | 0.646015 | tig0028698:+7333 | Msa1439030:CDS |
| TCAATGGCAAACCCGGTGGG+AGG | 0.656601 | tig0028698:-5991 | None:intergenic |
| TGTCATTGACGCCATAGACG+AGG | 0.663191 | tig0028698:+10651 | Msa1439030:CDS |
| TACTGTTACACAGCACGTGG+CGG | 0.668638 | tig0028698:+7445 | Msa1439030:CDS |
| AATTGATCATATACATAGAG+GGG | 0.671889 | tig0028698:-11153 | None:intergenic |
| GATATACTTGACTTCCACAC+AGG | 0.674786 | tig0028698:+7487 | Msa1439030:CDS |
| GATGATGGTAATGAAGTGGA+TGG | 0.699911 | tig0028698:+8506 | Msa1439030:intron |
| AGGTACTGTTACACAGCACG+TGG | 0.735751 | tig0028698:+7442 | Msa1439030:intron |
| AATGAAGTCACATACCACCA+AGG | 0.747149 | tig0028698:-10689 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAGAAAAAAAAAAAAAAAA+GGG | - | tig0028698:7205-7224 | None:intergenic | 10.0% |
| !!! | ATTTTAAATAAGTTGTTAAC+AGG | + | tig0028698:6126-6145 | Msa1439030:intron | 15.0% |
| !!! | TTTATTATTATTGATGACTA+TGG | + | tig0028698:6300-6319 | Msa1439030:intron | 15.0% |
| !! | AAAATTAAATAACACGATTT+AGG | - | tig0028698:6649-6668 | None:intergenic | 15.0% |
| !!! | TTATTTTAGTTTTTGTGATA+TGG | + | tig0028698:7057-7076 | Msa1439030:intron | 15.0% |
| !! | AATTAAAATCTATGTTTGTA+TGG | + | tig0028698:7095-7114 | Msa1439030:intron | 15.0% |
| !! | AAAAAAAAAAAAAAAGGGAA+AGG | - | tig0028698:7200-7219 | None:intergenic | 15.0% |
| !! | CGTAGAAAAAAAAAAAAAAA+AGG | - | tig0028698:7206-7225 | None:intergenic | 15.0% |
| !! | AAAATGAAAAGTTAATCTTT+AGG | + | tig0028698:8348-8367 | Msa1439030:intron | 15.0% |
| !!! | GCTTCTAAATTTAAAATTAA+TGG | - | tig0028698:9011-9030 | None:intergenic | 15.0% |
| !! | ATGAAAATATGTTAATAAGT+CGG | + | tig0028698:9618-9637 | Msa1439030:intron | 15.0% |
| !!! | TCTTATAATCCAATTTTATA+AGG | + | tig0028698:9652-9671 | Msa1439030:intron | 15.0% |
| !! | AGATATTATGATAATTAACT+TGG | + | tig0028698:10211-10230 | Msa1439030:intron | 15.0% |
| !!! | TTTTGTAGTTAATTAATGAT+TGG | - | tig0028698:10301-10320 | None:intergenic | 15.0% |
| !! | ATTAGATTACAGAGAAAAAA+GGG | + | tig0028698:5588-5607 | Msa1439030:five_prime_UTR | 20.0% |
| !!! | TTTTGAAATGAAACTGAAAT+TGG | - | tig0028698:5701-5720 | None:intergenic | 20.0% |
| !! | CAATAATTCAAAATCAGTAT+TGG | - | tig0028698:5875-5894 | None:intergenic | 20.0% |
| !!! | ATATGGAATTTTATTAATGC+AGG | + | tig0028698:6323-6342 | Msa1439030:intron | 20.0% |
| !!! | AAATTGAGATTTAAAATGCA+GGG | - | tig0028698:6402-6421 | None:intergenic | 20.0% |
| !! | ATGCTTTAATAAGAGTTTAA+TGG | + | tig0028698:6689-6708 | Msa1439030:intron | 20.0% |
| !!! | TTGTATGAACATTTTGAAAT+TGG | - | tig0028698:6787-6806 | None:intergenic | 20.0% |
| !! | TCAAAATGTTCATACAAAAA+TGG | + | tig0028698:6790-6809 | Msa1439030:intron | 20.0% |
| !! | CAAAATGTTCATACAAAAAT+GGG | + | tig0028698:6791-6810 | Msa1439030:intron | 20.0% |
| !!! | CTGTAGATCATAAATTTTAA+AGG | - | tig0028698:6873-6892 | None:intergenic | 20.0% |
| !! | ATACAAATACTTCATAGTTT+AGG | - | tig0028698:6967-6986 | None:intergenic | 20.0% |
| !! | ATAACAAACAACGAAATATT+GGG | - | tig0028698:6995-7014 | None:intergenic | 20.0% |
| !!! | AATATTTCGTTGTTTGTTAT+GGG | + | tig0028698:6995-7014 | Msa1439030:intron | 20.0% |
| !! | CTTATTCTTGTGATATTATA+AGG | + | tig0028698:7843-7862 | Msa1439030:intron | 20.0% |
| !! | GAAGTTGCTAAATTATAATA+CGG | - | tig0028698:7997-8016 | None:intergenic | 20.0% |
| !! | AGGAAGTTATTATCAATATA+TGG | + | tig0028698:8368-8387 | Msa1439030:intron | 20.0% |
| !!! | AGAAATTACATATTTTGATC+TGG | + | tig0028698:8547-8566 | Msa1439030:CDS | 20.0% |
| !!! | GGTAATTTTATCAACTTAAT+TGG | + | tig0028698:8568-8587 | Msa1439030:intron | 20.0% |
| !! | TGAAGTGAAAAATAAAAAAC+GGG | - | tig0028698:8703-8722 | None:intergenic | 20.0% |
| !! | GTGAAGTGAAAAATAAAAAA+CGG | - | tig0028698:8704-8723 | None:intergenic | 20.0% |
| !! | ATAAGTTCATTTCAATGAAT+TGG | - | tig0028698:8747-8766 | None:intergenic | 20.0% |
| !!! | AAATTTAAAATTAATGGACG+AGG | - | tig0028698:9005-9024 | None:intergenic | 20.0% |
| !! | ATTTAACTAATATTCAGAAG+AGG | + | tig0028698:9439-9458 | Msa1439030:intron | 20.0% |
| !! | TGAAAATATGTTAATAAGTC+GGG | + | tig0028698:9619-9638 | Msa1439030:intron | 20.0% |
| !! | AAGAAAATATATAGGAGAAT+TGG | - | tig0028698:9957-9976 | None:intergenic | 20.0% |
| !! | ATCTTAAACAAGTCTATAAA+AGG | - | tig0028698:10062-10081 | None:intergenic | 20.0% |
| !!! | TAGATCTGAATTTTTACAAT+TGG | + | tig0028698:10177-10196 | Msa1439030:intron | 20.0% |
| !!! | ATTGAATTTGAAACTAAGAA+AGG | - | tig0028698:10338-10357 | None:intergenic | 20.0% |
| !! | TTTAGTAAATTATGATACGA+TGG | + | tig0028698:10715-10734 | Msa1439030:intron | 20.0% |
| !! | CATGGAATAAATAGTTAAAA+AGG | - | tig0028698:10873-10892 | None:intergenic | 20.0% |
| !! | ATTACAACAATTACTAACAA+GGG | - | tig0028698:11112-11131 | None:intergenic | 20.0% |
| !! | AAATTGATCATATACATAGA+GGG | - | tig0028698:11157-11176 | None:intergenic | 20.0% |
| !! | AAAATTGATCATATACATAG+AGG | - | tig0028698:11158-11177 | None:intergenic | 20.0% |
| !!! | TGTATATGATCAATTTTGTA+AGG | + | tig0028698:11161-11180 | Msa1439030:three_prime_UTR | 20.0% |
| !!! | TTTTGATTGTTTTTCAGTTT+TGG | + | tig0028698:11299-11318 | Msa1439030:intron | 20.0% |
| ! | GATTAGATTACAGAGAAAAA+AGG | + | tig0028698:5587-5606 | Msa1439030:five_prime_UTR | 25.0% |
| ! | TTAGATTACAGAGAAAAAAG+GGG | + | tig0028698:5589-5608 | Msa1439030:five_prime_UTR | 25.0% |
| ! | AAGAATTGGAATGAGAATTA+AGG | - | tig0028698:5724-5743 | None:intergenic | 25.0% |
| ! | ACAGAAAATTGTAGAAGAAT+TGG | - | tig0028698:5738-5757 | None:intergenic | 25.0% |
| ! | ATCATCAGGATAAAATAAAG+AGG | - | tig0028698:5956-5975 | None:intergenic | 25.0% |
| ! | TTGACACGTAAGTAATTAAA+AGG | + | tig0028698:6239-6258 | Msa1439030:intron | 25.0% |
| !! | ATTAAAAGGTTTTACAACGT+CGG | + | tig0028698:6253-6272 | Msa1439030:intron | 25.0% |
| !! | ATTATTGATGACTATGGATA+TGG | + | tig0028698:6306-6325 | Msa1439030:intron | 25.0% |
| !! | CAAATTGAGATTTAAAATGC+AGG | - | tig0028698:6403-6422 | None:intergenic | 25.0% |
| ! | ATTCTTAATGTCATCTTGAA+TGG | + | tig0028698:6469-6488 | Msa1439030:intron | 25.0% |
| ! | TCTAATGTGAGTTTACTTTA+AGG | + | tig0028698:6502-6521 | Msa1439030:intron | 25.0% |
| ! | TCTCAATAATTGATGAGAAA+AGG | - | tig0028698:6611-6630 | None:intergenic | 25.0% |
| ! | TTAAATAACACGATTTAGGT+TGG | - | tig0028698:6645-6664 | None:intergenic | 25.0% |
| ! | AAGCATTATTCAAAGAGATT+TGG | - | tig0028698:6675-6694 | None:intergenic | 25.0% |
| !!! | TATGAACATTTTGAAATTGG+TGG | - | tig0028698:6784-6803 | None:intergenic | 25.0% |
| !!! | GAAAATTGATGGATTTTCAT+TGG | + | tig0028698:6821-6840 | Msa1439030:intron | 25.0% |
| ! | CATAACAAACAACGAAATAT+TGG | - | tig0028698:6996-7015 | None:intergenic | 25.0% |
| !! | CAATATTTCGTTGTTTGTTA+TGG | + | tig0028698:6994-7013 | Msa1439030:intron | 25.0% |
| ! | ATAAAAATGAGTGATATGCA+GGG | - | tig0028698:7041-7060 | None:intergenic | 25.0% |
| ! | AATAAAAATGAGTGATATGC+AGG | - | tig0028698:7042-7061 | None:intergenic | 25.0% |
| ! | AAAAAGAATGTCATTGTATG+TGG | - | tig0028698:7153-7172 | None:intergenic | 25.0% |
| !! | GAAATATGTATTTTCGCATA+AGG | - | tig0028698:7178-7197 | None:intergenic | 25.0% |
| ! | TTAGCAAATACAACTCTAAA+CGG | - | tig0028698:7687-7706 | None:intergenic | 25.0% |
| !! | CTAAAAACTTGTCAAGTTTT+TGG | + | tig0028698:7703-7722 | Msa1439030:intron | 25.0% |
| ! | ACTACTATAAACTAAAAGAG+AGG | - | tig0028698:7767-7786 | None:intergenic | 25.0% |
| !! | TTTATAGTAGTGTTTTTCGT+GGG | + | tig0028698:7776-7795 | Msa1439030:intron | 25.0% |
| ! | TGATATTATAAGGAGATGTT+TGG | + | tig0028698:7853-7872 | Msa1439030:intron | 25.0% |
| ! | GATATTATAAGGAGATGTTT+GGG | + | tig0028698:7854-7873 | Msa1439030:intron | 25.0% |
| ! | GAATTTATGTTTACAACTAC+TGG | + | tig0028698:7929-7948 | Msa1439030:intron | 25.0% |
| ! | GAATTTATGTTTACAACTAC+TGG | + | tig0028698:7929-7948 | Msa1439030:intron | 25.0% |
| ! | TATAATTTCATGTGCAAGTT+AGG | + | tig0028698:8114-8133 | Msa1439030:intron | 25.0% |
| ! | TCTAATTATGCAACAATTCA+TGG | - | tig0028698:8144-8163 | None:intergenic | 25.0% |
| ! | CGAGTAACAATGAATATATA+TGG | - | tig0028698:8213-8232 | None:intergenic | 25.0% |
| ! | AATCAAGCATGAAAAAACTT+GGG | - | tig0028698:8274-8293 | None:intergenic | 25.0% |
| ! | CAGTTGGAAAAATGAAAATT+AGG | - | tig0028698:8297-8316 | None:intergenic | 25.0% |
| ! | TTATTATCAATATATGGCCA+GGG | + | tig0028698:8374-8393 | Msa1439030:intron | 25.0% |
| !!! | TTGATTTTTTTTCTCAATCG+AGG | + | tig0028698:8612-8631 | Msa1439030:intron | 25.0% |
| !! | TATTTTTCACTTCACTAGTA+TGG | + | tig0028698:8709-8728 | Msa1439030:intron | 25.0% |
| ! | AAGACTTGATAAAAACAGAT+GGG | - | tig0028698:8844-8863 | None:intergenic | 25.0% |
| ! | AAAGACTTGATAAAAACAGA+TGG | - | tig0028698:8845-8864 | None:intergenic | 25.0% |
| !!! | TCTGTTTTTATCAAGTCTTT+TGG | + | tig0028698:8845-8864 | Msa1439030:intron | 25.0% |
| ! | ACAAGAATAATGTATAGATC+AGG | - | tig0028698:8882-8901 | None:intergenic | 25.0% |
| !! | AGAAAGTACAATCAATACTA+CGG | - | tig0028698:8921-8940 | None:intergenic | 25.0% |
| ! | ACTTCATGATATAAACACTA+TGG | - | tig0028698:8949-8968 | None:intergenic | 25.0% |
| !!! | ACTTTTTCTTTCTAAATCGA+GGG | + | tig0028698:9060-9079 | Msa1439030:intron | 25.0% |
| !!! | AATAGTCCTTTTTTTTTTGC+AGG | + | tig0028698:9266-9285 | Msa1439030:intron | 25.0% |
| ! | TATCTTCCTGCAAAAAAAAA+AGG | - | tig0028698:9275-9294 | None:intergenic | 25.0% |
| !!! | AACGTTTTCCTTTTAATTTC+TGG | - | tig0028698:9409-9428 | None:intergenic | 25.0% |
| ! | AAAAGGAAAACGTTTGATAT+TGG | + | tig0028698:9415-9434 | Msa1439030:intron | 25.0% |
| !!! | TCTTATTTTCTATTTCTGCA+AGG | - | tig0028698:9533-9552 | None:intergenic | 25.0% |
| ! | GAAAATATGTTAATAAGTCG+GGG | + | tig0028698:9620-9639 | Msa1439030:intron | 25.0% |
| ! | AATCAATCGCCTTATAAAAT+TGG | - | tig0028698:9664-9683 | None:intergenic | 25.0% |
| !!! | TTTTATAAGGCGATTGATTT+AGG | + | tig0028698:9665-9684 | Msa1439030:intron | 25.0% |
| ! | TTTATACGAACACAGAATTT+GGG | - | tig0028698:9696-9715 | None:intergenic | 25.0% |
| !! | TTTTATACGAACACAGAATT+TGG | - | tig0028698:9697-9716 | None:intergenic | 25.0% |
| ! | TAAACAAGTCTATAAAAGGA+GGG | - | tig0028698:10058-10077 | None:intergenic | 25.0% |
| ! | TTAAACAAGTCTATAAAAGG+AGG | - | tig0028698:10059-10078 | None:intergenic | 25.0% |
| !! | TTTGAAACTAAGAAAGGAAT+TGG | - | tig0028698:10332-10351 | None:intergenic | 25.0% |
| ! | TCTCGTATGCATTTATAATA+TGG | + | tig0028698:10500-10519 | Msa1439030:intron | 25.0% |
| !!! | AGTTAGTATTTGTTGTTATC+TGG | + | tig0028698:11064-11083 | Msa1439030:three_prime_UTR | 25.0% |
| ! | GATTACAACAATTACTAACA+AGG | - | tig0028698:11113-11132 | None:intergenic | 25.0% |
| ! | TGTTAGTAATTGTTGTAATC+TGG | + | tig0028698:11113-11132 | Msa1439030:three_prime_UTR | 25.0% |
| ! | AATTGATCATATACATAGAG+GGG | - | tig0028698:11156-11175 | None:intergenic | 25.0% |
| ! | TAAGGACCTGTAAAATTATA+GGG | + | tig0028698:11179-11198 | Msa1439030:three_prime_UTR | 25.0% |
| !! | CTATTTCCCTATAATTTTAC+AGG | - | tig0028698:11188-11207 | None:intergenic | 25.0% |
| ! | AAAACAAAGATAGATGAGAT+CGG | - | tig0028698:11275-11294 | None:intergenic | 25.0% |
| !! | AGTTTTACATGTCATTGTTT+AGG | + | tig0028698:11344-11363 | Msa1439030:three_prime_UTR | 25.0% |
| ! | AGGAGAATTTTTCTGTGATT+TGG | - | tig0028698:5768-5787 | None:intergenic | 30.0% |
| ! | ATTATTGCGTGATTTTTCTG+CGG | + | tig0028698:5888-5907 | Msa1439030:five_prime_UTR | 30.0% |
| GATGTTCAAAATGTTGTTAC+TGG | + | tig0028698:5916-5935 | Msa1439030:five_prime_UTR | 30.0% | |
| TTCTGCTTACTTCAACAAAT+CGG | + | tig0028698:6028-6047 | Msa1439030:CDS | 30.0% | |
| TTAATTACTTACGTGTCAAC+CGG | - | tig0028698:6238-6257 | None:intergenic | 30.0% | |
| GTTGCATCTAATCTTCATTT+AGG | + | tig0028698:6439-6458 | Msa1439030:intron | 30.0% | |
| GTAAAACTATTTCACAGTGA+CGG | - | tig0028698:6722-6741 | None:intergenic | 30.0% | |
| AAAATATCTCTGTCCATATC+AGG | + | tig0028698:7422-7441 | Msa1439030:intron | 30.0% | |
| TAAAAAAATACTTGCCTGTG+TGG | - | tig0028698:7504-7523 | None:intergenic | 30.0% | |
| ACATTAGTACTTCAGAGAAT+GGG | - | tig0028698:7531-7550 | None:intergenic | 30.0% | |
| TTAGAGTGTAAACAAAGCAA+AGG | + | tig0028698:7566-7585 | Msa1439030:intron | 30.0% | |
| TAGAGTGTAAACAAAGCAAA+GGG | + | tig0028698:7567-7586 | Msa1439030:intron | 30.0% | |
| ! | GTTTATAGTAGTGTTTTTCG+TGG | + | tig0028698:7775-7794 | Msa1439030:intron | 30.0% |
| TTCATTCTCCTTAGTAAGAA+GGG | - | tig0028698:7811-7830 | None:intergenic | 30.0% | |
| ATTCATTCTCCTTAGTAAGA+AGG | - | tig0028698:7812-7831 | None:intergenic | 30.0% | |
| TATCACAAGAATAAGTGACT+TGG | - | tig0028698:7838-7857 | None:intergenic | 30.0% | |
| CAACTACTGGACTTAAAATT+TGG | + | tig0028698:7942-7961 | Msa1439030:intron | 30.0% | |
| ATCAAGCATGAAAAAACTTG+GGG | - | tig0028698:8273-8292 | None:intergenic | 30.0% | |
| GAATCAAGCATGAAAAAACT+TGG | - | tig0028698:8275-8294 | None:intergenic | 30.0% | |
| GTTATTATCAATATATGGCC+AGG | + | tig0028698:8373-8392 | Msa1439030:intron | 30.0% | |
| ! | TAATACCATTTTGCAGATGA+TGG | + | tig0028698:8491-8510 | Msa1439030:intron | 30.0% |
| TAAGTGTTTCCAAGTTAGTA+AGG | + | tig0028698:8643-8662 | Msa1439030:intron | 30.0% | |
| ! | GCTTTGTATAGATGCATTTT+TGG | + | tig0028698:8971-8990 | Msa1439030:intron | 30.0% |
| ! | TAAATTTAGAAGCGTGACAA+AGG | + | tig0028698:9018-9037 | Msa1439030:intron | 30.0% |
| !! | GACTTTTTCTTTCTAAATCG+AGG | + | tig0028698:9059-9078 | Msa1439030:intron | 30.0% |
| GATAGTTGTAAAGTGACTAT+TGG | - | tig0028698:9116-9135 | None:intergenic | 30.0% | |
| CTTAACATTATTCCCATAGT+GGG | - | tig0028698:9574-9593 | None:intergenic | 30.0% | |
| TCTTAACATTATTCCCATAG+TGG | - | tig0028698:9575-9594 | None:intergenic | 30.0% | |
| !! | TAGGTTTTGTAGTGGAATTT+GGG | - | tig0028698:9916-9935 | None:intergenic | 30.0% |
| AGACGGAGAAGAAAATATAT+AGG | - | tig0028698:9965-9984 | None:intergenic | 30.0% | |
| GAAAAAGGGAAAGAAATAGA+GGG | - | tig0028698:10034-10053 | None:intergenic | 30.0% | |
| AAACAAGTCTATAAAAGGAG+GGG | - | tig0028698:10057-10076 | None:intergenic | 30.0% | |
| ATATTAAGGCAACCAAAATC+TGG | - | tig0028698:10447-10466 | None:intergenic | 30.0% | |
| ! | TTGGTTGCCTTAATATTTTC+CGG | + | tig0028698:10451-10470 | Msa1439030:intron | 30.0% |
| TCGTCAAACTTAATGTAACA+TGG | - | tig0028698:10891-10910 | None:intergenic | 30.0% | |
| !! | TCTACAGCTAAAAAAGTATC+GGG | - | tig0028698:11012-11031 | None:intergenic | 30.0% |
| ! | CTCTACAGCTAAAAAAGTAT+CGG | - | tig0028698:11013-11032 | None:intergenic | 30.0% |
| GTAAGGACCTGTAAAATTAT+AGG | + | tig0028698:11178-11197 | Msa1439030:three_prime_UTR | 30.0% | |
| ACAGAGAAAAAAGGGGAAAA+AGG | + | tig0028698:5596-5615 | Msa1439030:five_prime_UTR | 35.0% | |
| CAGAGAAAAAAGGGGAAAAA+GGG | + | tig0028698:5597-5616 | Msa1439030:five_prime_UTR | 35.0% | |
| ! | TTTCTTCGTCTTCTTTTTGG+AGG | - | tig0028698:5807-5826 | None:intergenic | 35.0% |
| ! | CCTTTTCTTCGTCTTCTTTT+TGG | - | tig0028698:5810-5829 | None:intergenic | 35.0% |
| CCAAAAAGAAGACGAAGAAA+AGG | + | tig0028698:5807-5826 | Msa1439030:five_prime_UTR | 35.0% | |
| GAATTCTTCAGTTGAAACTG+AGG | + | tig0028698:5832-5851 | Msa1439030:five_prime_UTR | 35.0% | |
| ! | AATTTCACCGTTTTCGTCAA+TGG | - | tig0028698:6010-6029 | None:intergenic | 35.0% |
| TAATTACTTACGTGTCAACC+GGG | - | tig0028698:6237-6256 | None:intergenic | 35.0% | |
| TAAAGAAGCTCATTTGTCGA+TGG | + | tig0028698:6529-6548 | Msa1439030:intron | 35.0% | |
| AAAGAAGCTCATTTGTCGAT+GGG | + | tig0028698:6530-6549 | Msa1439030:intron | 35.0% | |
| !! | AAAAGGCACTAAACAACAGT+TGG | - | tig0028698:6594-6613 | None:intergenic | 35.0% |
| ! | TTGAAATTGGTGGTATGACA+TGG | - | tig0028698:6774-6793 | None:intergenic | 35.0% |
| !! | GATGGATTTTCATTGGATGT+CGG | + | tig0028698:6828-6847 | Msa1439030:intron | 35.0% |
| !! | TTTCGTTGTTTGTTATGGGA+TGG | + | tig0028698:6999-7018 | Msa1439030:intron | 35.0% |
| TTGTGATATGGACAGATAAC+AGG | + | tig0028698:7069-7088 | Msa1439030:intron | 35.0% | |
| CAGAAGGAAGACATGAATTT+GGG | - | tig0028698:7246-7265 | None:intergenic | 35.0% | |
| ACAGAAGGAAGACATGAATT+TGG | - | tig0028698:7247-7266 | None:intergenic | 35.0% | |
| AACAAGATGCATGTGTATCT+TGG | - | tig0028698:7328-7347 | None:intergenic | 35.0% | |
| GACATTAGTACTTCAGAGAA+TGG | - | tig0028698:7532-7551 | None:intergenic | 35.0% | |
| AGCAAAGGGTTTATTCAGTT+TGG | + | tig0028698:7581-7600 | Msa1439030:intron | 35.0% | |
| GAATCGTACTACACTTTAAC+AGG | - | tig0028698:7629-7648 | None:intergenic | 35.0% | |
| ATTTAGACCCCTTCTTACTA+AGG | + | tig0028698:7800-7819 | Msa1439030:intron | 35.0% | |
| TCATTCTCCTTAGTAAGAAG+GGG | - | tig0028698:7810-7829 | None:intergenic | 35.0% | |
| CAACTACTGGACTTAAAGTT+TGG | + | tig0028698:8065-8084 | Msa1439030:intron | 35.0% | |
| AATTTCATGTGCAAGTTAGG+TGG | + | tig0028698:8117-8136 | Msa1439030:intron | 35.0% | |
| CATTACCATCATCTGCAAAA+TGG | - | tig0028698:8499-8518 | None:intergenic | 35.0% | |
| GTAATTTCTACACCATCACT+TGG | - | tig0028698:8536-8555 | None:intergenic | 35.0% | |
| ! | AGTTTGCTTCCTTACTAACT+TGG | - | tig0028698:8655-8674 | None:intergenic | 35.0% |
| ! | AGTGTGTTATTGTTCTTCCT+TGG | + | tig0028698:8786-8805 | Msa1439030:intron | 35.0% |
| ! | TTTTCTTTCTAAATCGAGGG+AGG | + | tig0028698:9063-9082 | Msa1439030:intron | 35.0% |
| TTTCTTTCTAAATCGAGGGA+GGG | + | tig0028698:9064-9083 | Msa1439030:intron | 35.0% | |
| !! | GTTTGACCTTGTCACTTTAA+GGG | - | tig0028698:9161-9180 | None:intergenic | 35.0% |
| !! | AGTTTGACCTTGTCACTTTA+AGG | - | tig0028698:9162-9181 | None:intergenic | 35.0% |
| TACAAACTTGGGTAGAACTT+TGG | + | tig0028698:9217-9236 | Msa1439030:intron | 35.0% | |
| TTCACAACAACAAACTGAAG+TGG | - | tig0028698:9327-9346 | None:intergenic | 35.0% | |
| !! | ACTTCAGTTTGTTGTTGTGA+AGG | + | tig0028698:9326-9345 | Msa1439030:CDS | 35.0% |
| AGATTGAAAGTAACCATTGC+AGG | + | tig0028698:9377-9396 | Msa1439030:intron | 35.0% | |
| GGATCACACCAGAAATTAAA+AGG | + | tig0028698:9398-9417 | Msa1439030:intron | 35.0% | |
| ATGAAATGATACTCCCACTA+TGG | + | tig0028698:9558-9577 | Msa1439030:intron | 35.0% | |
| TGAAATGATACTCCCACTAT+GGG | + | tig0028698:9559-9578 | Msa1439030:intron | 35.0% | |
| AAGCCTATCCAAGATTCATA+AGG | + | tig0028698:9715-9734 | Msa1439030:intron | 35.0% | |
| TGACCTTATGAATCTTGGAT+AGG | - | tig0028698:9721-9740 | None:intergenic | 35.0% | |
| AGAGATGACCTTATGAATCT+TGG | - | tig0028698:9726-9745 | None:intergenic | 35.0% | |
| GTCTCACATTGAATATGATC+TGG | + | tig0028698:9830-9849 | Msa1439030:intron | 35.0% | |
| GGAATTGAAAACATACTTCC+AGG | - | tig0028698:9856-9875 | None:intergenic | 35.0% | |
| !! | GTAGGTTTTGTAGTGGAATT+TGG | - | tig0028698:9917-9936 | None:intergenic | 35.0% |
| CAGAGAATGGTGAATAAAGA+CGG | - | tig0028698:9982-10001 | None:intergenic | 35.0% | |
| GGAAAAAGGGAAAGAAATAG+AGG | - | tig0028698:10035-10054 | None:intergenic | 35.0% | |
| TATAAAAGGAGGGGGAAAAA+GGG | - | tig0028698:10048-10067 | None:intergenic | 35.0% | |
| AACAAGTCTATAAAAGGAGG+GGG | - | tig0028698:10056-10075 | None:intergenic | 35.0% | |
| CTACTAGTATTCACAGAGTA+GGG | - | tig0028698:10140-10159 | None:intergenic | 35.0% | |
| ACTACTAGTATTCACAGAGT+AGG | - | tig0028698:10141-10160 | None:intergenic | 35.0% | |
| TGAGAATGGGATGTTTCAAA+TGG | + | tig0028698:10251-10270 | Msa1439030:CDS | 35.0% | |
| ! | AAATGGCTGATGATGTAAGT+AGG | + | tig0028698:10268-10287 | Msa1439030:intron | 35.0% |
| CGTAAAAGGGGAGAAAAAAT+AGG | - | tig0028698:10385-10404 | None:intergenic | 35.0% | |
| ! | TCTCAGAAAAAGGCGTAAAA+GGG | - | tig0028698:10398-10417 | None:intergenic | 35.0% |
| ! | ATCTCAGAAAAAGGCGTAAA+AGG | - | tig0028698:10399-10418 | None:intergenic | 35.0% |
| ! | ACAAAAGGTTGTCCAGATTT+TGG | + | tig0028698:10432-10451 | Msa1439030:intron | 35.0% |
| TGCATACGAGAAACAAAAGT+TGG | - | tig0028698:10491-10510 | None:intergenic | 35.0% | |
| GCTTGTGATTTAATCTGCTA+AGG | + | tig0028698:10592-10611 | Msa1439030:intron | 35.0% | |
| ! | TGACTTTTGCAACACACTTA+TGG | - | tig0028698:10787-10806 | None:intergenic | 35.0% |
| TAGGAAACACAACACAAACA+TGG | - | tig0028698:10922-10941 | None:intergenic | 35.0% | |
| TGCACTTATTGAAGCAATGA+TGG | + | tig0028698:10956-10975 | Msa1439030:CDS | 35.0% | |
| AAATAGATTGACTGTGCTCT+TGG | + | tig0028698:11202-11221 | Msa1439030:three_prime_UTR | 35.0% | |
| ! | AAAAGGGGAAAAAGGGTGTA+TGG | + | tig0028698:5604-5623 | Msa1439030:five_prime_UTR | 40.0% |
| TTGGAGGAAGAAGAAGAAGA+AGG | - | tig0028698:5791-5810 | None:intergenic | 40.0% | |
| CTTCAGTTGAAACTGAGGAT+TGG | + | tig0028698:5837-5856 | Msa1439030:five_prime_UTR | 40.0% | |
| ! | TCACCATAGTGAGTATTGCT+TGG | + | tig0028698:6055-6074 | Msa1439030:intron | 40.0% |
| GAACCAAGCAATACTCACTA+TGG | - | tig0028698:6061-6080 | None:intergenic | 40.0% | |
| TCCTATGAATAACCTTCCGT+TGG | + | tig0028698:6153-6172 | Msa1439030:CDS | 40.0% | |
| TCCAACGGAAGGTTATTCAT+AGG | - | tig0028698:6157-6176 | None:intergenic | 40.0% | |
| !! | TGAATGTATGTTGCTTTGCC+CGG | + | tig0028698:6216-6235 | Msa1439030:CDS | 40.0% |
| GTGCTCTTCAATATTTGCAC+AGG | - | tig0028698:6349-6368 | None:intergenic | 40.0% | |
| ! | ATATTGAAGAGCACACCTGA+TGG | + | tig0028698:6355-6374 | Msa1439030:CDS | 40.0% |
| TGGGATGATGCGAAAATTGA+TGG | + | tig0028698:6810-6829 | Msa1439030:intron | 40.0% | |
| TACTCATTCATCACAGTCAC+AGG | + | tig0028698:6925-6944 | Msa1439030:intron | 40.0% | |
| ACTCATTCATCACAGTCACA+GGG | + | tig0028698:6926-6945 | Msa1439030:intron | 40.0% | |
| ! | TCGCTGATCTAAAACACAGA+AGG | - | tig0028698:7262-7281 | None:intergenic | 40.0% |
| !! | TTCTGTGTTTTAGATCAGCG+AGG | + | tig0028698:7261-7280 | Msa1439030:intron | 40.0% |
| ! | CACATGCATCTTGTTTACAG+CGG | + | tig0028698:7333-7352 | Msa1439030:CDS | 40.0% |
| ! | ACATGCATCTTGTTTACAGC+GGG | + | tig0028698:7334-7353 | Msa1439030:CDS | 40.0% |
| CTGTGTAACAGTACCTGATA+TGG | - | tig0028698:7438-7457 | None:intergenic | 40.0% | |
| GATATACTTGACTTCCACAC+AGG | + | tig0028698:7487-7506 | Msa1439030:CDS | 40.0% | |
| ! | ATAAGGAGATGTTTGGGACT+TGG | + | tig0028698:7860-7879 | Msa1439030:intron | 40.0% |
| ! | TAAGGAGATGTTTGGGACTT+GGG | + | tig0028698:7861-7880 | Msa1439030:intron | 40.0% |
| TCACAATCAGACATGACAGT+TGG | - | tig0028698:8313-8332 | None:intergenic | 40.0% | |
| ! | TGCAGATGATGGTAATGAAG+TGG | + | tig0028698:8502-8521 | Msa1439030:intron | 40.0% |
| ! | GATGATGGTAATGAAGTGGA+TGG | + | tig0028698:8506-8525 | Msa1439030:intron | 40.0% |
| AAACAAAAGCAACACTGGTG+CGG | - | tig0028698:8821-8840 | None:intergenic | 40.0% | |
| ATGGGAAACAAAAGCAACAC+TGG | - | tig0028698:8826-8845 | None:intergenic | 40.0% | |
| !! | TCAAGTCTTTTGGAAGATCG+TGG | + | tig0028698:8855-8874 | Msa1439030:intron | 40.0% |
| TTCTTTCTAAATCGAGGGAG+GGG | + | tig0028698:9065-9084 | Msa1439030:intron | 40.0% | |
| GTTCTACCCAAGTTTGTATC+AGG | - | tig0028698:9215-9234 | None:intergenic | 40.0% | |
| ACAAACTGAAGTGGTTCAGA+TGG | - | tig0028698:9318-9337 | None:intergenic | 40.0% | |
| CTTTCAGAAGCTTGTACAAG+TGG | - | tig0028698:9359-9378 | None:intergenic | 40.0% | |
| AAGAGGTTCTTCTCTCTTCT+AGG | + | tig0028698:9456-9475 | Msa1439030:intron | 40.0% | |
| ! | ACGAACACAGAATTTGGGTT+GGG | - | tig0028698:9691-9710 | None:intergenic | 40.0% |
| TACGAACACAGAATTTGGGT+TGG | - | tig0028698:9692-9711 | None:intergenic | 40.0% | |
| ACATTGAATATGATCTGGCC+TGG | + | tig0028698:9835-9854 | Msa1439030:intron | 40.0% | |
| TGAGAGTCGTTCTCATTTCT+AGG | - | tig0028698:9877-9896 | None:intergenic | 40.0% | |
| !!! | AAGGTTGGTAGGTTTTGTAG+TGG | - | tig0028698:9924-9943 | None:intergenic | 40.0% |
| ATATATAGGAGAATTGGCGC+AGG | - | tig0028698:9951-9970 | None:intergenic | 40.0% | |
| CTATAAAAGGAGGGGGAAAA+AGG | - | tig0028698:10049-10068 | None:intergenic | 40.0% | |
| ATAATGCCACTGTTCTCCAA+TGG | - | tig0028698:10096-10115 | None:intergenic | 40.0% | |
| ! | AACTTGGCCTTTATTTGTGC+AGG | + | tig0028698:10227-10246 | Msa1439030:intron | 40.0% |
| ! | ACTTGGCCTTTATTTGTGCA+GGG | + | tig0028698:10228-10247 | Msa1439030:intron | 40.0% |
| TTCTCACCCTGCACAAATAA+AGG | - | tig0028698:10237-10256 | None:intergenic | 40.0% | |
| TTATTTGTGCAGGGTGAGAA+TGG | + | tig0028698:10237-10256 | Msa1439030:intron | 40.0% | |
| TATTTGTGCAGGGTGAGAAT+GGG | + | tig0028698:10238-10257 | Msa1439030:intron | 40.0% | |
| ! | CTCAGAAAAAGGCGTAAAAG+GGG | - | tig0028698:10397-10416 | None:intergenic | 40.0% |
| !! | ATCAGAGTGCCACTTACAAA+AGG | + | tig0028698:10417-10436 | Msa1439030:intron | 40.0% |
| ! | TCTGGACAACCTTTTGTAAG+TGG | - | tig0028698:10429-10448 | None:intergenic | 40.0% |
| CTAAGGCAACATTTGTGAAC+AGG | + | tig0028698:10609-10628 | Msa1439030:intron | 40.0% | |
| AAATTCAGTCTCCTCGTCTA+TGG | - | tig0028698:10665-10684 | None:intergenic | 40.0% | |
| GGAGACTGAATTTAATGCCT+TGG | + | tig0028698:10672-10691 | Msa1439030:CDS | 40.0% | |
| GACTGAATTTAATGCCTTGG+TGG | + | tig0028698:10675-10694 | Msa1439030:CDS | 40.0% | |
| AATGAAGTCACATACCACCA+AGG | - | tig0028698:10692-10711 | None:intergenic | 40.0% | |
| GTTTGTGTTGTGTTTCCTAC+AGG | + | tig0028698:10923-10942 | Msa1439030:intron | 40.0% | |
| GCTCAGGTCAATGAGAAAAT+TGG | - | tig0028698:11239-11258 | None:intergenic | 40.0% | |
| ! | TTTTCTCATTGACCTGAGCA+CGG | + | tig0028698:11240-11259 | Msa1439030:three_prime_UTR | 40.0% |
| GAGGAAGAAGAAGAAGAAGG+AGG | - | tig0028698:5788-5807 | None:intergenic | 45.0% | |
| !! | GTTGTTACTGGTGTTGCTTC+TGG | + | tig0028698:5928-5947 | Msa1439030:five_prime_UTR | 45.0% |
| ! | GTTTTCGTCAATGGCAAACC+CGG | - | tig0028698:6001-6020 | None:intergenic | 45.0% |
| GGGTTTGCCATTGACGAAAA+CGG | + | tig0028698:6000-6019 | Msa1439030:CDS | 45.0% | |
| !! | TGTGTTTTAGATCAGCGAGG+AGG | + | tig0028698:7264-7283 | Msa1439030:intron | 45.0% |
| GAATGCGTTTATCATCACCC+TGG | - | tig0028698:8394-8413 | None:intergenic | 45.0% | |
| TCTTTCTAAATCGAGGGAGG+GGG | + | tig0028698:9066-9085 | Msa1439030:intron | 45.0% | |
| AAGGACTTCAAATCTCGTCG+GGG | - | tig0028698:9138-9157 | None:intergenic | 45.0% | |
| GAAGGACTTCAAATCTCGTC+GGG | - | tig0028698:9139-9158 | None:intergenic | 45.0% | |
| GGAAGGACTTCAAATCTCGT+CGG | - | tig0028698:9140-9159 | None:intergenic | 45.0% | |
| GTCCTTCCCTTAAAGTGACA+AGG | + | tig0028698:9152-9171 | Msa1439030:intron | 45.0% | |
| !! | GACCTTGTCACTTTAAGGGA+AGG | - | tig0028698:9157-9176 | None:intergenic | 45.0% |
| AGACGGCCTGATACAAACTT+GGG | + | tig0028698:9206-9225 | Msa1439030:intron | 45.0% | |
| ! | TTTCTGGTGTGATCCTGCAA+TGG | - | tig0028698:9393-9412 | None:intergenic | 45.0% |
| CATTTGGAAGGTGACTTGAG+TGG | - | tig0028698:9768-9787 | None:intergenic | 45.0% | |
| ACCTTCCAAATGTTCAGTCC+TGG | + | tig0028698:9776-9795 | Msa1439030:intron | 45.0% | |
| TCCAGGACTGAACATTTGGA+AGG | - | tig0028698:9780-9799 | None:intergenic | 45.0% | |
| CATGTCCAGGACTGAACATT+TGG | - | tig0028698:9784-9803 | None:intergenic | 45.0% | |
| AATGTTCAGTCCTGGACATG+AGG | + | tig0028698:9784-9803 | Msa1439030:intron | 45.0% | |
| ATGTTCAGTCCTGGACATGA+GGG | + | tig0028698:9785-9804 | Msa1439030:intron | 45.0% | |
| ! | TGTAGTGGAATTTGGGACTG+CGG | - | tig0028698:9909-9928 | None:intergenic | 45.0% |
| GAAAGAAATAGAGGGAGTCG+GGG | - | tig0028698:10026-10045 | None:intergenic | 45.0% | |
| GGAAAGAAATAGAGGGAGTC+GGG | - | tig0028698:10027-10046 | None:intergenic | 45.0% | |
| GGGAAAGAAATAGAGGGAGT+CGG | - | tig0028698:10028-10047 | None:intergenic | 45.0% | |
| AAGATGCCTGTCATTGCCAT+TGG | + | tig0028698:10077-10096 | Msa1439030:intron | 45.0% | |
| TGTTCTCCAATGGCAATGAC+AGG | - | tig0028698:10086-10105 | None:intergenic | 45.0% | |
| TCATTGCCATTGGAGAACAG+TGG | + | tig0028698:10087-10106 | Msa1439030:intron | 45.0% | |
| GGCACTCTGATCTCAGAAAA+AGG | - | tig0028698:10408-10427 | None:intergenic | 45.0% | |
| ! | GCCTTAATATTTTCCGGCTG+TGG | + | tig0028698:10457-10476 | Msa1439030:intron | 45.0% |
| GCCACAGCCGGAAAATATTA+AGG | - | tig0028698:10461-10480 | None:intergenic | 45.0% | |
| CATTTGTGAACAGGACTTGC+TGG | + | tig0028698:10618-10637 | Msa1439030:intron | 45.0% | |
| AATTGCAACTGCTGCTGCTG+AGG | - | tig0028698:5642-5661 | None:intergenic | 50.0% | |
| TCCTGATGATATGCCGTTGC+CGG | + | tig0028698:5966-5985 | Msa1439030:exon | 50.0% | |
| TAACCTTCCGTTGGAGTGTG+TGG | + | tig0028698:6162-6181 | Msa1439030:CDS | 50.0% | |
| TTCCGTTGGAGTGTGTGGTT+CGG | + | tig0028698:6167-6186 | Msa1439030:CDS | 50.0% | |
| ! | TGAAGAGCACACCTGATGGA+TGG | + | tig0028698:6359-6378 | Msa1439030:CDS | 50.0% |
| CTTACAGCTGACCATCCATC+AGG | - | tig0028698:6373-6392 | None:intergenic | 50.0% | |
| ! | AGGTACTGTTACACAGCACG+TGG | + | tig0028698:7442-7461 | Msa1439030:intron | 50.0% |
| TACTGTTACACAGCACGTGG+CGG | + | tig0028698:7445-7464 | Msa1439030:CDS | 50.0% | |
| TGGTGCGGTAATACAGACCA+AGG | - | tig0028698:8806-8825 | None:intergenic | 50.0% | |
| GAAGCGTGACAAAGGAACCT+CGG | + | tig0028698:9026-9045 | Msa1439030:intron | 50.0% | |
| AAGCGTGACAAAGGAACCTC+GGG | + | tig0028698:9027-9046 | Msa1439030:intron | 50.0% | |
| AAAAGTCTGCATCAAGCCCG+AGG | - | tig0028698:9046-9065 | None:intergenic | 50.0% | |
| CAGACGGCCTGATACAAACT+TGG | + | tig0028698:9205-9224 | Msa1439030:intron | 50.0% | |
| ACACAATCTCCCTCATGTCC+AGG | - | tig0028698:9797-9816 | None:intergenic | 50.0% | |
| TATAGGAGAATTGGCGCAGG+AGG | - | tig0028698:9948-9967 | None:intergenic | 50.0% | |
| TCTATGGCGTCAATGACAGC+AGG | - | tig0028698:10649-10668 | None:intergenic | 50.0% | |
| TGTCATTGACGCCATAGACG+AGG | + | tig0028698:10651-10670 | Msa1439030:CDS | 50.0% | |
| GTGCAGCTTCTTCTTCCTGT+AGG | - | tig0028698:10941-10960 | None:intergenic | 50.0% | |
| CGGTAAAATCAACCGTGCTC+AGG | - | tig0028698:11255-11274 | None:intergenic | 50.0% | |
| TCCGGCAACGGCATATCATC+AGG | - | tig0028698:5970-5989 | None:intergenic | 55.0% | |
| TCGTCAATGGCAAACCCGGT+GGG | - | tig0028698:5997-6016 | None:intergenic | 55.0% | |
| TTCGTCAATGGCAAACCCGG+TGG | - | tig0028698:5998-6017 | None:intergenic | 55.0% | |
| GAACCACACACTCCAACGGA+AGG | - | tig0028698:6168-6187 | None:intergenic | 55.0% | |
| CTCCGAACCACACACTCCAA+CGG | - | tig0028698:6172-6191 | None:intergenic | 55.0% | |
| ! | GTGGATGGCTTGCCAAGTGA+TGG | + | tig0028698:8521-8540 | Msa1439030:CDS | 55.0% |
| ! | TCTGCGAGGTGTCAACTCAG+TGG | - | tig0028698:9189-9208 | None:intergenic | 55.0% |
| ! | CTGAGTTGACACCTCGCAGA+CGG | + | tig0028698:9189-9208 | Msa1439030:intron | 55.0% |
| TTTGTATCAGGCCGTCTGCG+AGG | - | tig0028698:9203-9222 | None:intergenic | 55.0% | |
| ATTGGCGCAGGAGGAAAGGT+TGG | - | tig0028698:9939-9958 | None:intergenic | 55.0% | |
| GAGAATTGGCGCAGGAGGAA+AGG | - | tig0028698:9943-9962 | None:intergenic | 55.0% | |
| GGACAGATGGGAGCAGAGAA+TGG | - | tig0028698:9995-10014 | None:intergenic | 55.0% | |
| GGGGTGCAATGAGGACAGAT+GGG | - | tig0028698:10007-10026 | None:intergenic | 55.0% | |
| TCAATGGCAAACCCGGTGGG+AGG | - | tig0028698:5994-6013 | None:intergenic | 60.0% | |
| ! | GCGCAGGAGGAAAGGTTGGT+AGG | - | tig0028698:9935-9954 | None:intergenic | 60.0% |
| CGGGGTGCAATGAGGACAGA+TGG | - | tig0028698:10008-10027 | None:intergenic | 60.0% | |
| GTTGGAACGCATGCCACAGC+CGG | - | tig0028698:10473-10492 | None:intergenic | 60.0% | |
| GCAAACCCGGTGGGAGGTTC+CGG | - | tig0028698:5988-6007 | None:intergenic | 65.0% | |
| GAGGGAGTCGGGGTGCAATG+AGG | - | tig0028698:10016-10035 | None:intergenic | 65.0% | |
| CCGGTGGGAGGTTCCGGCAA+CGG | - | tig0028698:5982-6001 | None:intergenic | 70.0% | |
| CCGTTGCCGGAACCTCCCAC+CGG | + | tig0028698:5979-5998 | Msa1439030:CDS | 70.0% | |
| CGTTGCCGGAACCTCCCACC+GGG | + | tig0028698:5980-5999 | Msa1439030:CDS | 70.0% | |
| GGCGAGCGCATACGCTGCAC+AGG | - | tig0028698:7307-7326 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028698 | gene | 5574 | 11373 | 5574 | ID=Msa1439030;Name=Msa1439030 |
| tig0028698 | mRNA | 5574 | 11373 | 5574 | ID=Msa1439030-mRNA-1;Parent=Msa1439030;Name=Msa1439030-mRNA-1;_AED=0.09;_eAED=0.09;_QI=402|0.9|0.90|1|0.9|0.81|11|350|218 |
| tig0028698 | exon | 5574 | 6062 | 5574 | ID=Msa1439030-mRNA-1:exon:11569;Parent=Msa1439030-mRNA-1 |
| tig0028698 | exon | 6148 | 6245 | 6148 | ID=Msa1439030-mRNA-1:exon:11570;Parent=Msa1439030-mRNA-1 |
| tig0028698 | exon | 6345 | 6387 | 6345 | ID=Msa1439030-mRNA-1:exon:11571;Parent=Msa1439030-mRNA-1 |
| tig0028698 | exon | 7274 | 7355 | 7274 | ID=Msa1439030-mRNA-1:exon:11572;Parent=Msa1439030-mRNA-1 |
| tig0028698 | exon | 7444 | 7512 | 7444 | ID=Msa1439030-mRNA-1:exon:11573;Parent=Msa1439030-mRNA-1 |
| tig0028698 | exon | 8507 | 8568 | 8507 | ID=Msa1439030-mRNA-1:exon:11574;Parent=Msa1439030-mRNA-1 |
| tig0028698 | exon | 9288 | 9347 | 9288 | ID=Msa1439030-mRNA-1:exon:11575;Parent=Msa1439030-mRNA-1 |
| tig0028698 | exon | 10249 | 10281 | 10249 | ID=Msa1439030-mRNA-1:exon:11576;Parent=Msa1439030-mRNA-1 |
| tig0028698 | exon | 10631 | 10696 | 10631 | ID=Msa1439030-mRNA-1:exon:11577;Parent=Msa1439030-mRNA-1 |
| tig0028698 | exon | 10945 | 11293 | 10945 | ID=Msa1439030-mRNA-1:exon:11578;Parent=Msa1439030-mRNA-1 |
| tig0028698 | exon | 11316 | 11373 | 11316 | ID=Msa1439030-mRNA-1:exon:11579;Parent=Msa1439030-mRNA-1 |
| tig0028698 | five_prime_UTR | 5574 | 5975 | 5574 | ID=Msa1439030-mRNA-1:five_prime_utr;Parent=Msa1439030-mRNA-1 |
| tig0028698 | CDS | 5976 | 6062 | 5976 | ID=Msa1439030-mRNA-1:cds;Parent=Msa1439030-mRNA-1 |
| tig0028698 | CDS | 6148 | 6245 | 6148 | ID=Msa1439030-mRNA-1:cds;Parent=Msa1439030-mRNA-1 |
| tig0028698 | CDS | 6345 | 6387 | 6345 | ID=Msa1439030-mRNA-1:cds;Parent=Msa1439030-mRNA-1 |
| tig0028698 | CDS | 7274 | 7355 | 7274 | ID=Msa1439030-mRNA-1:cds;Parent=Msa1439030-mRNA-1 |
| tig0028698 | CDS | 7444 | 7512 | 7444 | ID=Msa1439030-mRNA-1:cds;Parent=Msa1439030-mRNA-1 |
| tig0028698 | CDS | 8507 | 8568 | 8507 | ID=Msa1439030-mRNA-1:cds;Parent=Msa1439030-mRNA-1 |
| tig0028698 | CDS | 9288 | 9347 | 9288 | ID=Msa1439030-mRNA-1:cds;Parent=Msa1439030-mRNA-1 |
| tig0028698 | CDS | 10249 | 10281 | 10249 | ID=Msa1439030-mRNA-1:cds;Parent=Msa1439030-mRNA-1 |
| tig0028698 | CDS | 10631 | 10696 | 10631 | ID=Msa1439030-mRNA-1:cds;Parent=Msa1439030-mRNA-1 |
| tig0028698 | CDS | 10945 | 11001 | 10945 | ID=Msa1439030-mRNA-1:cds;Parent=Msa1439030-mRNA-1 |
| tig0028698 | three_prime_UTR | 11002 | 11293 | 11002 | ID=Msa1439030-mRNA-1:three_prime_utr;Parent=Msa1439030-mRNA-1 |
| tig0028698 | three_prime_UTR | 11316 | 11373 | 11316 | ID=Msa1439030-mRNA-1:three_prime_utr;Parent=Msa1439030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
