Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152500 | XP_039688129.1 | 93.548 | 124 | 7 | 1 | 1 | 124 | 1 | 123 | 1.87e-76 | 232 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152500 | A0A072VFR2 | 93.548 | 124 | 7 | 1 | 1 | 124 | 1 | 123 | 8.93e-77 | 232 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0152500 | 0.807126 | 5.887024e-50 | -8.615850e-47 |
| Msa0006980 | Msa0152500 | 0.823719 | 1.190814e-53 | -8.615850e-47 |
| Msa0124130 | Msa0152500 | 0.843813 | 1.112481e-58 | -8.615850e-47 |
| Msa0149140 | Msa0152500 | 0.843185 | 1.637167e-58 | -8.615850e-47 |
| Msa0152480 | Msa0152500 | 0.946928 | 1.803567e-105 | -8.615850e-47 |
| Msa0152500 | Msa0156250 | 0.802327 | 5.914429e-49 | -8.615850e-47 |
| Msa0152500 | Msa0203030 | 0.806769 | 7.004478e-50 | -8.615850e-47 |
| Msa0152500 | Msa0212150 | 0.817199 | 3.732946e-52 | -8.615850e-47 |
| Msa0152500 | Msa0215640 | 0.829206 | 5.861663e-55 | -8.615850e-47 |
| Msa0152500 | Msa0252630 | 0.807651 | 4.555065e-50 | -8.615850e-47 |
| Msa0152500 | Msa0252770 | 0.816560 | 5.193080e-52 | -8.615850e-47 |
| Msa0152500 | Msa0289920 | 0.808890 | 2.479627e-50 | -8.615850e-47 |
| Msa0152500 | Msa0306120 | 0.822186 | 2.710489e-53 | -8.615850e-47 |
| Msa0152500 | Msa0322830 | 0.800715 | 1.265264e-48 | -8.615850e-47 |
| Msa0152500 | Msa0322860 | 0.804929 | 1.706277e-49 | -8.615850e-47 |
| Msa0152500 | Msa0329620 | 0.838147 | 3.416911e-57 | -8.615850e-47 |
| Msa0152500 | Msa0333700 | 0.817404 | 3.356187e-52 | -8.615850e-47 |
| Msa0152500 | Msa0343660 | 0.808608 | 2.848593e-50 | -8.615850e-47 |
| Msa0152500 | Msa0351770 | 0.819352 | 1.215260e-52 | -8.615850e-47 |
| Msa0152500 | Msa0359250 | 0.838337 | 3.053702e-57 | -8.615850e-47 |
| Msa0152500 | Msa0373960 | 0.810866 | 9.315779e-51 | -8.615850e-47 |
| Msa0152500 | Msa0392420 | 0.802352 | 5.844791e-49 | -8.615850e-47 |
| Msa0152500 | Msa0406000 | 0.851775 | 7.124977e-61 | -8.615850e-47 |
| Msa0152500 | Msa0423100 | 0.812409 | 4.301673e-51 | -8.615850e-47 |
| Msa0152500 | Msa0424330 | 0.810162 | 1.322034e-50 | -8.615850e-47 |
| Msa0152500 | Msa0424340 | 0.841823 | 3.762251e-58 | -8.615850e-47 |
| Msa0152500 | Msa0424350 | 0.824677 | 7.092081e-54 | -8.615850e-47 |
| Msa0152500 | Msa0441590 | 0.817532 | 3.140324e-52 | -8.615850e-47 |
| Msa0152500 | Msa0451400 | 0.850966 | 1.206320e-60 | -8.615850e-47 |
| Msa0152500 | Msa0469260 | 0.807260 | 5.513035e-50 | -8.615850e-47 |
| Msa0152500 | Msa0487570 | 0.807095 | 5.974190e-50 | -8.615850e-47 |
| Msa0152500 | Msa0492190 | 0.835840 | 1.327546e-56 | -8.615850e-47 |
| Msa0152500 | Msa0515950 | 0.826628 | 2.444547e-54 | -8.615850e-47 |
| Msa0152500 | Msa0534930 | 0.814787 | 1.289248e-51 | -8.615850e-47 |
| Msa0152500 | Msa0535040 | 0.806777 | 6.975493e-50 | -8.615850e-47 |
| Msa0152500 | Msa0575740 | 0.833188 | 6.154631e-56 | -8.615850e-47 |
| Msa0152500 | Msa0591800 | 0.808718 | 2.699319e-50 | -8.615850e-47 |
| Msa0152500 | Msa0594090 | 0.813095 | 3.044851e-51 | -8.615850e-47 |
| Msa0152500 | Msa0669840 | 0.822678 | 2.083012e-53 | -8.615850e-47 |
| Msa0152500 | Msa0709450 | 0.808221 | 3.444802e-50 | -8.615850e-47 |
| Msa0152500 | Msa0711320 | 0.830657 | 2.595242e-55 | -8.615850e-47 |
| Msa0152500 | Msa0725860 | 0.821522 | 3.861795e-53 | -8.615850e-47 |
| Msa0152500 | Msa0739580 | 0.840687 | 7.481297e-58 | -8.615850e-47 |
| Msa0152500 | Msa0752840 | 0.830617 | 2.654413e-55 | -8.615850e-47 |
| Msa0152500 | Msa0782360 | 0.822789 | 1.962771e-53 | -8.615850e-47 |
| Msa0152500 | Msa0786040 | 0.806878 | 6.640267e-50 | -8.615850e-47 |
| Msa0152500 | Msa0823400 | 0.814874 | 1.233470e-51 | -8.615850e-47 |
| Msa0152500 | Msa0831940 | 0.832595 | 8.644941e-56 | -8.615850e-47 |
| Msa0152500 | Msa0860280 | 0.832735 | 7.976246e-56 | -8.615850e-47 |
| Msa0152500 | Msa0862310 | 0.812443 | 4.228672e-51 | -8.615850e-47 |
| Msa0152500 | Msa0867350 | 0.825817 | 3.810779e-54 | -8.615850e-47 |
| Msa0152500 | Msa0885060 | 0.805486 | 1.304606e-49 | -8.615850e-47 |
| Msa0152500 | Msa0898730 | 0.810445 | 1.148376e-50 | -8.615850e-47 |
| Msa0152500 | Msa0922750 | 0.812665 | 3.781198e-51 | -8.615850e-47 |
| Msa0152500 | Msa0927120 | 0.808354 | 3.227355e-50 | -8.615850e-47 |
| Msa0152500 | Msa0929870 | 0.813457 | 2.534750e-51 | -8.615850e-47 |
| Msa0152500 | Msa0953540 | 0.821522 | 3.860860e-53 | -8.615850e-47 |
| Msa0152500 | Msa0961560 | 0.824318 | 8.615611e-54 | -8.615850e-47 |
| Msa0152500 | Msa0965310 | 0.811555 | 6.603950e-51 | -8.615850e-47 |
| Msa0152500 | Msa0996270 | 0.829261 | 5.684101e-55 | -8.615850e-47 |
| Msa0152500 | Msa0999300 | 0.822465 | 2.334958e-53 | -8.615850e-47 |
| Msa0152500 | Msa0999350 | 0.812216 | 4.739769e-51 | -8.615850e-47 |
| Msa0152500 | Msa0999360 | 0.814581 | 1.432514e-51 | -8.615850e-47 |
| Msa0152500 | Msa0999400 | 0.802806 | 4.710502e-49 | -8.615850e-47 |
| Msa0152500 | Msa0999410 | 0.805146 | 1.536472e-49 | -8.615850e-47 |
| Msa0152500 | Msa1001890 | 0.811909 | 5.530279e-51 | -8.615850e-47 |
| Msa0152500 | Msa1084520 | 0.828577 | 8.319367e-55 | -8.615850e-47 |
| Msa0152500 | Msa1125810 | 0.830579 | 2.713159e-55 | -8.615850e-47 |
| Msa0152500 | Msa1145020 | 0.827103 | 1.881896e-54 | -8.615850e-47 |
| Msa0152500 | Msa1171310 | 0.847536 | 1.086749e-59 | -8.615850e-47 |
| Msa0152500 | Msa1201160 | 0.817749 | 2.806097e-52 | -8.615850e-47 |
| Msa0152500 | Msa1228190 | 0.860516 | 1.956611e-63 | -8.615850e-47 |
| Msa0152500 | Msa1271260 | 0.857810 | 1.265995e-62 | -8.615850e-47 |
| Msa0152500 | Msa1294290 | 0.807961 | 3.914179e-50 | -8.615850e-47 |
| Msa0152500 | Msa1305510 | 0.835531 | 1.589392e-56 | -8.615850e-47 |
| Msa0152500 | Msa1326630 | 0.805138 | 1.542791e-49 | -8.615850e-47 |
| Msa0152500 | Msa1378870 | 0.812392 | 4.338554e-51 | -8.615850e-47 |
| Msa0152500 | Msa1379970 | 0.820795 | 5.679380e-53 | -8.615850e-47 |
| Msa0152500 | Msa1394890 | 0.835201 | 1.925964e-56 | -8.615850e-47 |
| Msa0152500 | Msa1406780 | 0.820543 | 6.488385e-53 | -8.615850e-47 |
| Msa0152500 | Msa1421550 | 0.811642 | 6.320213e-51 | -8.615850e-47 |
| Msa0152500 | Msa1431850 | 0.824892 | 6.309069e-54 | -8.615850e-47 |
| Msa0152500 | Msa1435480 | 0.812348 | 4.436482e-51 | -8.615850e-47 |
| Msa0152500 | Msa1459530 | 0.816310 | 5.905718e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152500 | MtrunA17_Chr1g0161551 | 92.857 | 84 | 5 | 1 | 1 | 84 | 1 | 83 | 2.95e-50 | 154 |
| Msa0152500 | MtrunA17_Chr6g0479181 | 41.228 | 114 | 63 | 2 | 9 | 122 | 53 | 162 | 3.21e-23 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152500 | AT1G14760.2 | 42.157 | 102 | 54 | 3 | 22 | 119 | 32 | 132 | 1.44e-19 | 78.6 |
| Msa0152500 | AT1G70510.1 | 36.792 | 106 | 59 | 2 | 22 | 122 | 68 | 170 | 6.75e-12 | 61.2 |
| Msa0152500 | AT1G23380.1 | 34.906 | 106 | 61 | 2 | 22 | 122 | 84 | 186 | 2.31e-11 | 59.7 |
Find 19 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGATGGAGGGTAAAGAAAT+TGG | 0.288718 | 1_4:+15188113 | None:intergenic |
| GTTTGGACTAGTTGTTGTTT+TGG | 0.335695 | 1_4:-15188801 | None:intergenic |
| CCATCCTTTGTTTGAAGCAT+TGG | 0.359729 | 1_4:+15188202 | Msa0152500:CDS |
| TGATCAAGCTCTGAATTGTT+TGG | 0.360004 | 1_4:-15188818 | None:intergenic |
| TTCAGAGCTTGATCACTTCA+TGG | 0.367274 | 1_4:+15188826 | Msa0152500:CDS |
| AAGTGATGCATGGAAGAAAT+TGG | 0.438853 | 1_4:+15188766 | Msa0152500:CDS |
| GTCTCACATCAATTGTTTGA+AGG | 0.470627 | 1_4:+15188229 | Msa0152500:CDS |
| TATATTCAACTGCAGGAACT+TGG | 0.501461 | 1_4:+15190076 | Msa0152500:CDS |
| GTTCATCAATCACGTCTTTG+AGG | 0.505826 | 1_4:-15190018 | None:intergenic |
| AAAAGAAAGTGAAAATGAAG+AGG | 0.568561 | 1_4:+15188157 | Msa0152500:CDS |
| CCAATGCTTCAAACAAAGGA+TGG | 0.572089 | 1_4:-15188202 | None:intergenic |
| TTGATATAACAAGTGATGCA+TGG | 0.576358 | 1_4:+15188756 | Msa0152500:CDS |
| GGAAAGGGAAGTGATGATGT+AGG | 0.576930 | 1_4:+15188134 | Msa0152500:CDS |
| TGCTACGTATATTCAACTGC+AGG | 0.578517 | 1_4:+15190069 | Msa0152500:CDS |
| TCAACCAATGCTTCAAACAA+AGG | 0.579326 | 1_4:-15188206 | None:intergenic |
| GAGGGTAAAGAAATTGGAAA+GGG | 0.582588 | 1_4:+15188119 | Msa0152500:CDS |
| GGAGGGTAAAGAAATTGGAA+AGG | 0.606364 | 1_4:+15188118 | Msa0152500:CDS |
| TATTTCTTAGGTCGGATCTG+AGG | 0.611391 | 1_4:+15188721 | Msa0152500:intron |
| CAACTGCAGGAACTTGGTGA+AGG | 0.630993 | 1_4:+15190082 | Msa0152500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATATAGTGTATAATTA+TGG | + | chr1_4:15188376-15188395 | Msa0152500:intron | 10.0% |
| !! | ATATTAATATATACACAAAA+AGG | + | chr1_4:15188453-15188472 | Msa0152500:intron | 10.0% |
| !! | TATTAATATATACACAAAAA+GGG | + | chr1_4:15188454-15188473 | Msa0152500:intron | 10.0% |
| !! | ATAGATATATAAATTCTTTA+CGG | + | chr1_4:15189052-15189071 | Msa0152500:intron | 10.0% |
| !! | AAATAATAATCTATAAAAGA+TGG | - | chr1_4:15189590-15189609 | None:intergenic | 10.0% |
| !! | AAATAATAATCTATAAAAGA+TGG | - | chr1_4:15189590-15189609 | None:intergenic | 10.0% |
| !! | AATAATATAGTGTATAATTA+TGG | + | chr1_4:15188376-15188395 | Msa0152500:intron | 10.0% |
| !! | ATATTAATATATACACAAAA+AGG | + | chr1_4:15188453-15188472 | Msa0152500:intron | 10.0% |
| !! | TATTAATATATACACAAAAA+GGG | + | chr1_4:15188454-15188473 | Msa0152500:intron | 10.0% |
| !! | ATAGATATATAAATTCTTTA+CGG | + | chr1_4:15189052-15189071 | Msa0152500:intron | 10.0% |
| !! | AAATAATAATCTATAAAAGA+TGG | - | chr1_4:15189590-15189609 | None:intergenic | 10.0% |
| !! | AAATAATAATCTATAAAAGA+TGG | - | chr1_4:15189590-15189609 | None:intergenic | 10.0% |
| !! | ACAACTTAAATTTATTTAAG+AGG | + | chr1_4:15188275-15188294 | Msa0152500:intron | 15.0% |
| !! | GTATTACATACATTAATTAA+TGG | + | chr1_4:15188848-15188867 | Msa0152500:intron | 15.0% |
| !!! | TTGTTACTTAGTAATTAATT+TGG | - | chr1_4:15189089-15189108 | None:intergenic | 15.0% |
| !!! | TTACTAAGTAACAATTTTTA+TGG | + | chr1_4:15189095-15189114 | Msa0152500:intron | 15.0% |
| !! | ACAACTTAAATTTATTTAAG+AGG | + | chr1_4:15188275-15188294 | Msa0152500:intron | 15.0% |
| !! | GTATTACATACATTAATTAA+TGG | + | chr1_4:15188848-15188867 | Msa0152500:intron | 15.0% |
| !!! | TTGTTACTTAGTAATTAATT+TGG | - | chr1_4:15189089-15189108 | None:intergenic | 15.0% |
| !!! | TTACTAAGTAACAATTTTTA+TGG | + | chr1_4:15189095-15189114 | Msa0152500:intron | 15.0% |
| !! | TAATTATGGAAAGATAGTTT+AGG | + | chr1_4:15188390-15188409 | Msa0152500:intron | 20.0% |
| !!! | TCTTTTTTGCAAAAGAAAAA+TGG | + | chr1_4:15188637-15188656 | Msa0152500:intron | 20.0% |
| !!! | AAGAAAAATGGATTAATCAA+AGG | + | chr1_4:15188649-15188668 | Msa0152500:intron | 20.0% |
| !!! | AGTAATTAATTTGGATGTTT+TGG | - | chr1_4:15189080-15189099 | None:intergenic | 20.0% |
| !! | AATCATATTATATGTGAACT+AGG | - | chr1_4:15189957-15189976 | None:intergenic | 20.0% |
| !! | TATGATTCATTTATGTACAT+AGG | + | chr1_4:15189970-15189989 | Msa0152500:intron | 20.0% |
| !! | TAATTATGGAAAGATAGTTT+AGG | + | chr1_4:15188390-15188409 | Msa0152500:intron | 20.0% |
| !!! | TCTTTTTTGCAAAAGAAAAA+TGG | + | chr1_4:15188637-15188656 | Msa0152500:intron | 20.0% |
| !!! | AAGAAAAATGGATTAATCAA+AGG | + | chr1_4:15188649-15188668 | Msa0152500:intron | 20.0% |
| !!! | AGTAATTAATTTGGATGTTT+TGG | - | chr1_4:15189080-15189099 | None:intergenic | 20.0% |
| !! | AATCATATTATATGTGAACT+AGG | - | chr1_4:15189957-15189976 | None:intergenic | 20.0% |
| !! | TATGATTCATTTATGTACAT+AGG | + | chr1_4:15189970-15189989 | Msa0152500:intron | 20.0% |
| ! | AAAAGAAAGTGAAAATGAAG+AGG | + | chr1_4:15188157-15188176 | Msa0152500:CDS | 25.0% |
| ! | TAATTTCATTCCATACATGT+TGG | - | chr1_4:15188681-15188700 | None:intergenic | 25.0% |
| !! | TCTTCATTCCTTTATTTCTT+AGG | + | chr1_4:15188709-15188728 | Msa0152500:intron | 25.0% |
| ! | CATACATTAATTAATGGTCA+TGG | + | chr1_4:15188854-15188873 | Msa0152500:intron | 25.0% |
| ! | TGTGTGTAAAATAGATATTG+TGG | + | chr1_4:15189008-15189027 | Msa0152500:intron | 25.0% |
| ! | TCATGAAAGTTGTCTATTAA+TGG | + | chr1_4:15189273-15189292 | Msa0152500:intron | 25.0% |
| !!! | ACGTAAATTGAAAGTTTTGA+AGG | - | chr1_4:15189342-15189361 | None:intergenic | 25.0% |
| ! | GTAACTAAAACTTGTCATTA+TGG | - | chr1_4:15189367-15189386 | None:intergenic | 25.0% |
| !!! | TTTTTAAGCAAGCATAAACT+AGG | + | chr1_4:15189851-15189870 | Msa0152500:intron | 25.0% |
| ! | AAAAGAAAGTGAAAATGAAG+AGG | + | chr1_4:15188157-15188176 | Msa0152500:CDS | 25.0% |
| ! | TAATTTCATTCCATACATGT+TGG | - | chr1_4:15188681-15188700 | None:intergenic | 25.0% |
| !! | TCTTCATTCCTTTATTTCTT+AGG | + | chr1_4:15188709-15188728 | Msa0152500:intron | 25.0% |
| ! | CATACATTAATTAATGGTCA+TGG | + | chr1_4:15188854-15188873 | Msa0152500:intron | 25.0% |
| ! | TGTGTGTAAAATAGATATTG+TGG | + | chr1_4:15189008-15189027 | Msa0152500:intron | 25.0% |
| ! | TCATGAAAGTTGTCTATTAA+TGG | + | chr1_4:15189273-15189292 | Msa0152500:intron | 25.0% |
| !!! | ACGTAAATTGAAAGTTTTGA+AGG | - | chr1_4:15189342-15189361 | None:intergenic | 25.0% |
| ! | GTAACTAAAACTTGTCATTA+TGG | - | chr1_4:15189367-15189386 | None:intergenic | 25.0% |
| !!! | TTTTTAAGCAAGCATAAACT+AGG | + | chr1_4:15189851-15189870 | Msa0152500:intron | 25.0% |
| TGTAAGTAATGTATTCCTCA+TGG | - | chr1_4:15188426-15188445 | None:intergenic | 30.0% | |
| AGGGTAAAAAAGACAACAAA+AGG | + | chr1_4:15188473-15188492 | Msa0152500:intron | 30.0% | |
| GGGTAAAAAAGACAACAAAA+GGG | + | chr1_4:15188474-15188493 | Msa0152500:intron | 30.0% | |
| AAGGATATATCCAACATGTA+TGG | + | chr1_4:15188668-15188687 | Msa0152500:intron | 30.0% | |
| ! | CATTCCTTTATTTCTTAGGT+CGG | + | chr1_4:15188713-15188732 | Msa0152500:intron | 30.0% |
| TTGATATAACAAGTGATGCA+TGG | + | chr1_4:15188756-15188775 | Msa0152500:CDS | 30.0% | |
| ! | AATCAAATTTGTTCGCTCAA+TGG | + | chr1_4:15188960-15188979 | Msa0152500:intron | 30.0% |
| GTCAAAAAGTTGTTGCAAAA+TGG | - | chr1_4:15189155-15189174 | None:intergenic | 30.0% | |
| ! | AAAGCTTTTGCTTCTTTTGT+TGG | - | chr1_4:15190043-15190062 | None:intergenic | 30.0% |
| TGTAAGTAATGTATTCCTCA+TGG | - | chr1_4:15188426-15188445 | None:intergenic | 30.0% | |
| AGGGTAAAAAAGACAACAAA+AGG | + | chr1_4:15188473-15188492 | Msa0152500:intron | 30.0% | |
| GGGTAAAAAAGACAACAAAA+GGG | + | chr1_4:15188474-15188493 | Msa0152500:intron | 30.0% | |
| AAGGATATATCCAACATGTA+TGG | + | chr1_4:15188668-15188687 | Msa0152500:intron | 30.0% | |
| ! | CATTCCTTTATTTCTTAGGT+CGG | + | chr1_4:15188713-15188732 | Msa0152500:intron | 30.0% |
| TTGATATAACAAGTGATGCA+TGG | + | chr1_4:15188756-15188775 | Msa0152500:CDS | 30.0% | |
| ! | AATCAAATTTGTTCGCTCAA+TGG | + | chr1_4:15188960-15188979 | Msa0152500:intron | 30.0% |
| GTCAAAAAGTTGTTGCAAAA+TGG | - | chr1_4:15189155-15189174 | None:intergenic | 30.0% | |
| ! | AAAGCTTTTGCTTCTTTTGT+TGG | - | chr1_4:15190043-15190062 | None:intergenic | 30.0% |
| GAGGGTAAAGAAATTGGAAA+GGG | + | chr1_4:15188119-15188138 | Msa0152500:CDS | 35.0% | |
| TCAACCAATGCTTCAAACAA+AGG | - | chr1_4:15188209-15188228 | None:intergenic | 35.0% | |
| GTCTCACATCAATTGTTTGA+AGG | + | chr1_4:15188229-15188248 | Msa0152500:CDS | 35.0% | |
| AGATCCGACCTAAGAAATAA+AGG | - | chr1_4:15188720-15188739 | None:intergenic | 35.0% | |
| AAGTGATGCATGGAAGAAAT+TGG | + | chr1_4:15188766-15188785 | Msa0152500:CDS | 35.0% | |
| !!! | GTTTGGACTAGTTGTTGTTT+TGG | - | chr1_4:15188804-15188823 | None:intergenic | 35.0% |
| !! | TGATCAAGCTCTGAATTGTT+TGG | - | chr1_4:15188821-15188840 | None:intergenic | 35.0% |
| !!! | TACATAGGAAGCATTTTGCA+TGG | + | chr1_4:15189985-15190004 | Msa0152500:intron | 35.0% |
| TATATTCAACTGCAGGAACT+TGG | + | chr1_4:15190076-15190095 | Msa0152500:CDS | 35.0% | |
| GAGGGTAAAGAAATTGGAAA+GGG | + | chr1_4:15188119-15188138 | Msa0152500:CDS | 35.0% | |
| TCAACCAATGCTTCAAACAA+AGG | - | chr1_4:15188209-15188228 | None:intergenic | 35.0% | |
| GTCTCACATCAATTGTTTGA+AGG | + | chr1_4:15188229-15188248 | Msa0152500:CDS | 35.0% | |
| AGATCCGACCTAAGAAATAA+AGG | - | chr1_4:15188720-15188739 | None:intergenic | 35.0% | |
| AAGTGATGCATGGAAGAAAT+TGG | + | chr1_4:15188766-15188785 | Msa0152500:CDS | 35.0% | |
| !!! | GTTTGGACTAGTTGTTGTTT+TGG | - | chr1_4:15188804-15188823 | None:intergenic | 35.0% |
| !! | TGATCAAGCTCTGAATTGTT+TGG | - | chr1_4:15188821-15188840 | None:intergenic | 35.0% |
| !!! | TACATAGGAAGCATTTTGCA+TGG | + | chr1_4:15189985-15190004 | Msa0152500:intron | 35.0% |
| TATATTCAACTGCAGGAACT+TGG | + | chr1_4:15190076-15190095 | Msa0152500:CDS | 35.0% | |
| GGAGGGTAAAGAAATTGGAA+AGG | + | chr1_4:15188118-15188137 | Msa0152500:CDS | 40.0% | |
| CCAATGCTTCAAACAAAGGA+TGG | - | chr1_4:15188205-15188224 | None:intergenic | 40.0% | |
| ! | CCATCCTTTGTTTGAAGCAT+TGG | + | chr1_4:15188202-15188221 | Msa0152500:CDS | 40.0% |
| ! | GGAAAGATAGTTTAGGACCA+CGG | + | chr1_4:15188397-15188416 | Msa0152500:intron | 40.0% |
| TATTTCTTAGGTCGGATCTG+AGG | + | chr1_4:15188721-15188740 | Msa0152500:intron | 40.0% | |
| TTCAGAGCTTGATCACTTCA+TGG | + | chr1_4:15188826-15188845 | Msa0152500:CDS | 40.0% | |
| !! | GTACGTATGGTTTTGCATGT+GGG | - | chr1_4:15189405-15189424 | None:intergenic | 40.0% |
| AATACGTTGTGACGTACGTA+TGG | - | chr1_4:15189418-15189437 | None:intergenic | 40.0% | |
| AATACGTTGTGACGTACGTA+TGG | - | chr1_4:15189418-15189437 | None:intergenic | 40.0% | |
| GTTCATCAATCACGTCTTTG+AGG | - | chr1_4:15190021-15190040 | None:intergenic | 40.0% | |
| TGCTACGTATATTCAACTGC+AGG | + | chr1_4:15190069-15190088 | Msa0152500:CDS | 40.0% | |
| GGAGGGTAAAGAAATTGGAA+AGG | + | chr1_4:15188118-15188137 | Msa0152500:CDS | 40.0% | |
| CCAATGCTTCAAACAAAGGA+TGG | - | chr1_4:15188205-15188224 | None:intergenic | 40.0% | |
| ! | CCATCCTTTGTTTGAAGCAT+TGG | + | chr1_4:15188202-15188221 | Msa0152500:CDS | 40.0% |
| ! | GGAAAGATAGTTTAGGACCA+CGG | + | chr1_4:15188397-15188416 | Msa0152500:intron | 40.0% |
| TATTTCTTAGGTCGGATCTG+AGG | + | chr1_4:15188721-15188740 | Msa0152500:intron | 40.0% | |
| TTCAGAGCTTGATCACTTCA+TGG | + | chr1_4:15188826-15188845 | Msa0152500:CDS | 40.0% | |
| !! | GTACGTATGGTTTTGCATGT+GGG | - | chr1_4:15189405-15189424 | None:intergenic | 40.0% |
| AATACGTTGTGACGTACGTA+TGG | - | chr1_4:15189418-15189437 | None:intergenic | 40.0% | |
| AATACGTTGTGACGTACGTA+TGG | - | chr1_4:15189418-15189437 | None:intergenic | 40.0% | |
| GTTCATCAATCACGTCTTTG+AGG | - | chr1_4:15190021-15190040 | None:intergenic | 40.0% | |
| TGCTACGTATATTCAACTGC+AGG | + | chr1_4:15190069-15190088 | Msa0152500:CDS | 40.0% | |
| ! | GGAAAGGGAAGTGATGATGT+AGG | + | chr1_4:15188134-15188153 | Msa0152500:CDS | 45.0% |
| !! | TGGTTTTGCATGTGGGTTGA+GGG | - | chr1_4:15189398-15189417 | None:intergenic | 45.0% |
| !! | ATGGTTTTGCATGTGGGTTG+AGG | - | chr1_4:15189399-15189418 | None:intergenic | 45.0% |
| !! | CGTACGTATGGTTTTGCATG+TGG | - | chr1_4:15189406-15189425 | None:intergenic | 45.0% |
| ! | GGAAAGGGAAGTGATGATGT+AGG | + | chr1_4:15188134-15188153 | Msa0152500:CDS | 45.0% |
| !! | TGGTTTTGCATGTGGGTTGA+GGG | - | chr1_4:15189398-15189417 | None:intergenic | 45.0% |
| !! | ATGGTTTTGCATGTGGGTTG+AGG | - | chr1_4:15189399-15189418 | None:intergenic | 45.0% |
| !! | CGTACGTATGGTTTTGCATG+TGG | - | chr1_4:15189406-15189425 | None:intergenic | 45.0% |
| TGTATTCCTCATGGTGACCG+TGG | - | chr1_4:15188417-15188436 | None:intergenic | 50.0% | |
| ! | TTGCATGTGGGTTGAGGGTT+CGG | - | chr1_4:15189393-15189412 | None:intergenic | 50.0% |
| ! | GACGTACGTATGGTTCTGCT+AGG | - | chr1_4:15189639-15189658 | None:intergenic | 50.0% |
| ! | CAACTGCAGGAACTTGGTGA+AGG | + | chr1_4:15190082-15190101 | Msa0152500:CDS | 50.0% |
| TGTATTCCTCATGGTGACCG+TGG | - | chr1_4:15188417-15188436 | None:intergenic | 50.0% | |
| ! | TTGCATGTGGGTTGAGGGTT+CGG | - | chr1_4:15189393-15189412 | None:intergenic | 50.0% |
| ! | GACGTACGTATGGTTCTGCT+AGG | - | chr1_4:15189639-15189658 | None:intergenic | 50.0% |
| ! | CAACTGCAGGAACTTGGTGA+AGG | + | chr1_4:15190082-15190101 | Msa0152500:CDS | 50.0% |
| TTAGGACCACGGTCACCATG+AGG | + | chr1_4:15188408-15188427 | Msa0152500:intron | 55.0% | |
| TTAGGACCACGGTCACCATG+AGG | + | chr1_4:15188408-15188427 | Msa0152500:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 15188116 | 15190114 | 15188116 | ID=Msa0152500;Name=Msa0152500 |
| chr1_4 | mRNA | 15188116 | 15190114 | 15188116 | ID=Msa0152500-mRNA-1;Parent=Msa0152500;Name=Msa0152500-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|124 |
| chr1_4 | exon | 15188116 | 15188250 | 15188116 | ID=Msa0152500-mRNA-1:exon:5983;Parent=Msa0152500-mRNA-1 |
| chr1_4 | exon | 15188731 | 15188847 | 15188731 | ID=Msa0152500-mRNA-1:exon:5984;Parent=Msa0152500-mRNA-1 |
| chr1_4 | exon | 15189992 | 15190114 | 15189992 | ID=Msa0152500-mRNA-1:exon:5985;Parent=Msa0152500-mRNA-1 |
| chr1_4 | CDS | 15188116 | 15188250 | 15188116 | ID=Msa0152500-mRNA-1:cds;Parent=Msa0152500-mRNA-1 |
| chr1_4 | CDS | 15188731 | 15188847 | 15188731 | ID=Msa0152500-mRNA-1:cds;Parent=Msa0152500-mRNA-1 |
| chr1_4 | CDS | 15189992 | 15190114 | 15189992 | ID=Msa0152500-mRNA-1:cds;Parent=Msa0152500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
