Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387520 | XP_003603604.1 | 98.339 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 0.0 | 611 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387520 | sp|O81004|Y2287_ARATH | 59.829 | 234 | 91 | 2 | 66 | 298 | 67 | 298 | 1.67e-101 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387520 | G7J3E8 | 98.339 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 0.0 | 611 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012380 | Msa1387520 | 0.801529 | 8.626226e-49 | -8.615850e-47 |
| Msa0046050 | Msa1387520 | 0.807142 | 5.840418e-50 | -8.615850e-47 |
| Msa0080810 | Msa1387520 | 0.807047 | 6.117765e-50 | -8.615850e-47 |
| Msa0096020 | Msa1387520 | 0.806478 | 8.067585e-50 | -8.615850e-47 |
| Msa1349640 | Msa1387520 | 0.800871 | 1.176190e-48 | -8.615850e-47 |
| Msa1349810 | Msa1387520 | 0.834256 | 3.329288e-56 | -8.615850e-47 |
| Msa1358340 | Msa1387520 | 0.806244 | 9.038387e-50 | -8.615850e-47 |
| Msa1363690 | Msa1387520 | -0.851030 | 1.156997e-60 | -8.615850e-47 |
| Msa1364850 | Msa1387520 | 0.800024 | 1.749936e-48 | -8.615850e-47 |
| Msa1368980 | Msa1387520 | 0.813774 | 2.158729e-51 | -8.615850e-47 |
| Msa1369180 | Msa1387520 | 0.826635 | 2.434797e-54 | -8.615850e-47 |
| Msa1373390 | Msa1387520 | 0.822771 | 1.981435e-53 | -8.615850e-47 |
| Msa1384620 | Msa1387520 | 0.832480 | 9.230994e-56 | -8.615850e-47 |
| Msa1387520 | Msa1388610 | 0.806681 | 7.310885e-50 | -8.615850e-47 |
| Msa1387520 | Msa1395580 | 0.825554 | 4.400411e-54 | -8.615850e-47 |
| Msa1387520 | Msa1396550 | -0.848290 | 6.736593e-60 | -8.615850e-47 |
| Msa1387520 | Msa1403950 | 0.800358 | 1.496473e-48 | -8.615850e-47 |
| Msa1387520 | Msa1405380 | 0.804350 | 2.253680e-49 | -8.615850e-47 |
| Msa1387520 | Msa1407210 | -0.848213 | 7.074085e-60 | -8.615850e-47 |
| Msa1387520 | Msa1409060 | -0.805040 | 1.617409e-49 | -8.615850e-47 |
| Msa1387520 | Msa1423660 | -0.818682 | 1.725399e-52 | -8.615850e-47 |
| Msa1387520 | Msa1425540 | 0.801959 | 7.038661e-49 | -8.615850e-47 |
| Msa1387520 | Msa1427600 | 0.819564 | 1.087083e-52 | -8.615850e-47 |
| Msa1387520 | Msa1430630 | 0.800457 | 1.428693e-48 | -8.615850e-47 |
| Msa1387520 | Msa1434660 | 0.804323 | 2.282468e-49 | -8.615850e-47 |
| Msa1387520 | Msa1435690 | 0.802013 | 6.860969e-49 | -8.615850e-47 |
| Msa1387520 | Msa1443550 | 0.800535 | 1.377008e-48 | -8.615850e-47 |
| Msa1387520 | Msa1453540 | 0.806690 | 7.277261e-50 | -8.615850e-47 |
| Msa1387520 | Msa1462600 | 0.815187 | 1.050967e-51 | -8.615850e-47 |
| Msa0610360 | Msa1387520 | 0.804841 | 1.779884e-49 | -8.615850e-47 |
| Msa0610810 | Msa1387520 | 0.821723 | 3.470296e-53 | -8.615850e-47 |
| Msa0614980 | Msa1387520 | 0.843691 | 1.198926e-58 | -8.615850e-47 |
| Msa0619390 | Msa1387520 | 0.808870 | 2.504271e-50 | -8.615850e-47 |
| Msa0621780 | Msa1387520 | 0.805279 | 1.441445e-49 | -8.615850e-47 |
| Msa0622250 | Msa1387520 | 0.823820 | 1.127612e-53 | -8.615850e-47 |
| Msa0650890 | Msa1387520 | 0.805601 | 1.233945e-49 | -8.615850e-47 |
| Msa0651310 | Msa1387520 | 0.818353 | 2.049008e-52 | -8.615850e-47 |
| Msa0679780 | Msa1387520 | 0.811127 | 8.179625e-51 | -8.615850e-47 |
| Msa0693500 | Msa1387520 | 0.819234 | 1.292886e-52 | -8.615850e-47 |
| Msa0705810 | Msa1387520 | 0.830780 | 2.421798e-55 | -8.615850e-47 |
| Msa0713210 | Msa1387520 | 0.805101 | 1.570323e-49 | -8.615850e-47 |
| Msa0713220 | Msa1387520 | 0.822382 | 2.440465e-53 | -8.615850e-47 |
| Msa0747900 | Msa1387520 | 0.804280 | 2.329826e-49 | -8.615850e-47 |
| Msa0748330 | Msa1387520 | 0.818798 | 1.623992e-52 | -8.615850e-47 |
| Msa0748980 | Msa1387520 | 0.833635 | 4.763367e-56 | -8.615850e-47 |
| Msa0790640 | Msa1387520 | 0.832565 | 8.792092e-56 | -8.615850e-47 |
| Msa0793100 | Msa1387520 | 0.826812 | 2.209226e-54 | -8.615850e-47 |
| Msa0795710 | Msa1387520 | 0.805771 | 1.136280e-49 | -8.615850e-47 |
| Msa0825520 | Msa1387520 | 0.834845 | 2.368182e-56 | -8.615850e-47 |
| Msa0140290 | Msa1387520 | 0.809283 | 2.042776e-50 | -8.615850e-47 |
| Msa0233200 | Msa1387520 | 0.813286 | 2.764846e-51 | -8.615850e-47 |
| Msa1224820 | Msa1387520 | 0.806350 | 8.584719e-50 | -8.615850e-47 |
| Msa1228350 | Msa1387520 | 0.810436 | 1.153582e-50 | -8.615850e-47 |
| Msa1237750 | Msa1387520 | 0.807481 | 4.950310e-50 | -8.615850e-47 |
| Msa1255020 | Msa1387520 | 0.809095 | 2.240915e-50 | -8.615850e-47 |
| Msa1258100 | Msa1387520 | 0.814851 | 1.248096e-51 | -8.615850e-47 |
| Msa1263590 | Msa1387520 | 0.825622 | 4.240763e-54 | -8.615850e-47 |
| Msa1263670 | Msa1387520 | 0.822344 | 2.490267e-53 | -8.615850e-47 |
| Msa1266710 | Msa1387520 | -0.841182 | 5.547298e-58 | -8.615850e-47 |
| Msa1272950 | Msa1387520 | 0.803521 | 3.350701e-49 | -8.615850e-47 |
| Msa1295470 | Msa1387520 | 0.806846 | 6.746075e-50 | -8.615850e-47 |
| Msa0373220 | Msa1387520 | 0.808621 | 2.830912e-50 | -8.615850e-47 |
| Msa0380520 | Msa1387520 | 0.808840 | 2.541377e-50 | -8.615850e-47 |
| Msa0388200 | Msa1387520 | 0.999466 | 5.360183e-314 | -8.615850e-47 |
| Msa0392050 | Msa1387520 | 0.800904 | 1.157795e-48 | -8.615850e-47 |
| Msa0404070 | Msa1387520 | 0.802701 | 4.951432e-49 | -8.615850e-47 |
| Msa0415200 | Msa1387520 | 0.803573 | 3.269101e-49 | -8.615850e-47 |
| Msa0427740 | Msa1387520 | -0.813602 | 2.356037e-51 | -8.615850e-47 |
| Msa0427970 | Msa1387520 | -0.816723 | 4.774973e-52 | -8.615850e-47 |
| Msa0430020 | Msa1387520 | 0.810591 | 1.068134e-50 | -8.615850e-47 |
| Msa0433670 | Msa1387520 | 0.971350 | 5.026804e-133 | -8.615850e-47 |
| Msa0437550 | Msa1387520 | 0.800814 | 1.208017e-48 | -8.615850e-47 |
| Msa0437790 | Msa1387520 | 0.816366 | 5.739928e-52 | -8.615850e-47 |
| Msa0468020 | Msa1387520 | 0.801942 | 7.097378e-49 | -8.615850e-47 |
| Msa0469950 | Msa1387520 | 0.803658 | 3.137784e-49 | -8.615850e-47 |
| Msa0477550 | Msa1387520 | 0.970799 | 3.601720e-132 | -8.615850e-47 |
| Msa0480430 | Msa1387520 | 0.809074 | 2.264766e-50 | -8.615850e-47 |
| Msa1036020 | Msa1387520 | -0.814594 | 1.422863e-51 | -8.615850e-47 |
| Msa1067910 | Msa1387520 | 0.821893 | 3.169630e-53 | -8.615850e-47 |
| Msa1077940 | Msa1387520 | -0.806198 | 9.241005e-50 | -8.615850e-47 |
| Msa1078600 | Msa1387520 | 0.801081 | 1.065182e-48 | -8.615850e-47 |
| Msa0253160 | Msa1387520 | 0.811755 | 5.972865e-51 | -8.615850e-47 |
| Msa0291940 | Msa1387520 | 0.813229 | 2.845215e-51 | -8.615850e-47 |
| Msa0303440 | Msa1387520 | 0.808396 | 3.161172e-50 | -8.615850e-47 |
| Msa1144730 | Msa1387520 | 0.801417 | 9.091502e-49 | -8.615850e-47 |
| Msa1158090 | Msa1387520 | 0.818885 | 1.552165e-52 | -8.615850e-47 |
| Msa1202220 | Msa1387520 | 0.801633 | 8.212162e-49 | -8.615850e-47 |
| Msa1219780 | Msa1387520 | -0.850014 | 2.232878e-60 | -8.615850e-47 |
| Msa1220680 | Msa1387520 | 0.808529 | 2.961925e-50 | -8.615850e-47 |
| Msa1222030 | Msa1387520 | -0.809374 | 1.953309e-50 | -8.615850e-47 |
| Msa0518570 | Msa1387520 | -0.815283 | 1.000813e-51 | -8.615850e-47 |
| Msa0519060 | Msa1387520 | 0.802938 | 4.424205e-49 | -8.615850e-47 |
| Msa0521570 | Msa1387520 | 0.999510 | 6.330809e-318 | -8.615850e-47 |
| Msa0524960 | Msa1387520 | 0.819859 | 9.310043e-53 | -8.615850e-47 |
| Msa0577050 | Msa1387520 | 0.826821 | 2.197823e-54 | -8.615850e-47 |
| Msa0579360 | Msa1387520 | 0.800438 | 1.441350e-48 | -8.615850e-47 |
| Msa0580540 | Msa1387520 | 0.807262 | 5.508972e-50 | -8.615850e-47 |
| Msa0864730 | Msa1387520 | 0.840438 | 8.694470e-58 | -8.615850e-47 |
| Msa0864750 | Msa1387520 | 0.838781 | 2.345519e-57 | -8.615850e-47 |
| Msa0888900 | Msa1387520 | 0.812873 | 3.404937e-51 | -8.615850e-47 |
| Msa0899130 | Msa1387520 | 0.827489 | 1.520795e-54 | -8.615850e-47 |
| Msa0904630 | Msa1387520 | 0.805548 | 1.266005e-49 | -8.615850e-47 |
| Msa0936650 | Msa1387520 | 0.800010 | 1.760876e-48 | -8.615850e-47 |
| Msa0968960 | Msa1387520 | 0.803104 | 4.088478e-49 | -8.615850e-47 |
| Msa0973890 | Msa1387520 | 0.842383 | 2.673733e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387520 | MtrunA17_Chr3g0139461 | 98.339 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 0.0 | 611 |
| Msa1387520 | MtrunA17_Chr4g0047261 | 61.966 | 234 | 86 | 2 | 66 | 298 | 64 | 295 | 1.09e-103 | 305 |
| Msa1387520 | MtrunA17_Chr3g0107041 | 40.000 | 155 | 88 | 1 | 86 | 240 | 461 | 610 | 7.78e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387520 | AT5G11480.1 | 66.458 | 319 | 88 | 4 | 1 | 301 | 1 | 318 | 1.62e-136 | 389 |
| Msa1387520 | AT2G22870.1 | 59.829 | 234 | 91 | 2 | 66 | 298 | 67 | 298 | 1.69e-102 | 302 |
| Msa1387520 | AT5G58370.1 | 40.580 | 138 | 81 | 1 | 103 | 240 | 274 | 410 | 5.51e-23 | 98.6 |
| Msa1387520 | AT5G58370.3 | 40.580 | 138 | 81 | 1 | 103 | 240 | 274 | 410 | 6.13e-23 | 98.6 |
| Msa1387520 | AT5G58370.2 | 40.580 | 138 | 81 | 1 | 103 | 240 | 274 | 410 | 6.13e-23 | 98.6 |
Find 82 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATTATGGGTTCTAGATT+TGG | 0.286082 | tig0020912:+41594 | None:intergenic |
| CTGGTTGATTTGCCTGGATA+TGG | 0.290721 | tig0020912:-41141 | Msa1387520:CDS |
| TTGTCCATCTTGAATACTTA+AGG | 0.298374 | tig0020912:-39003 | Msa1387520:three_prime_UTR |
| CCGGTTAAGGAAATAGTCTT+TGG | 0.322070 | tig0020912:+40287 | None:intergenic |
| CTTCCTGAGTTCGCTCTTGT+TGG | 0.347167 | tig0020912:-41384 | Msa1387520:CDS |
| CCAAAGACTATTTCCTTAAC+CGG | 0.351830 | tig0020912:-40287 | Msa1387520:CDS |
| GAATTTAGAATTTGAATCAT+TGG | 0.361774 | tig0020912:+38916 | None:intergenic |
| TAACCGGTCAACATTGGTTT+CGG | 0.367527 | tig0020912:-40271 | Msa1387520:CDS |
| AAACCAATGTTGACCGGTTA+AGG | 0.367559 | tig0020912:+40274 | None:intergenic |
| TTGGTGAAGATTAATGTCAT+TGG | 0.374167 | tig0020912:+39247 | None:intergenic |
| CGGCATTATGTTGTCGGAGT+TGG | 0.377561 | tig0020912:-39027 | Msa1387520:three_prime_UTR |
| TGAGCCAGTAGTTCCGGAGC+TGG | 0.377582 | tig0020912:+39062 | None:intergenic |
| CTTGTTGGTCGTTCCAATGT+TGG | 0.388640 | tig0020912:-41369 | Msa1387520:CDS |
| GGAAGATGAAATTGTGAAAA+GGG | 0.394291 | tig0020912:+41701 | None:intergenic |
| AGTGCTTGAGCCAGTAGTTC+CGG | 0.398592 | tig0020912:+39056 | None:intergenic |
| CTTGAGTATGCTGCTTGGTT+GGG | 0.404038 | tig0020912:-40204 | Msa1387520:CDS |
| TGCTTGGTTGGGTGAGAATA+AGG | 0.405086 | tig0020912:-40193 | Msa1387520:intron |
| GAAGTTGTGAGAGATGATTT+TGG | 0.405539 | tig0020912:+41621 | None:intergenic |
| TTTGTTTAAGAGTGTGGTTA+AGG | 0.415649 | tig0020912:+41647 | None:intergenic |
| TGGTGAAGATTAATGTCATT+GGG | 0.416483 | tig0020912:+39248 | None:intergenic |
| AGGAAGATGAAATTGTGAAA+AGG | 0.418757 | tig0020912:+41700 | None:intergenic |
| TTGTTGGTCGTTCCAATGTT+GGG | 0.429746 | tig0020912:-41368 | Msa1387520:CDS |
| TCTTGAGTATGCTGCTTGGT+TGG | 0.431152 | tig0020912:-40205 | Msa1387520:CDS |
| TGTCCATCTTGAATACTTAA+GGG | 0.437140 | tig0020912:-39002 | Msa1387520:three_prime_UTR |
| TGGTACCTGGTTGATTTGCC+TGG | 0.439670 | tig0020912:-41147 | Msa1387520:CDS |
| AGTTCCGGAGCTGGGCCATA+TGG | 0.447478 | tig0020912:+39071 | None:intergenic |
| TAGTATAATTTGAGCATCAT+TGG | 0.450984 | tig0020912:+41458 | None:intergenic |
| TTTCTCAATAGAGTGTGATA+TGG | 0.453137 | tig0020912:-41754 | Msa1387520:exon |
| CGCAGGAACTTAGAATGGAT+TGG | 0.455183 | tig0020912:-40320 | Msa1387520:CDS |
| GTATCTCATCACGGCCTTGA+TGG | 0.455440 | tig0020912:+39098 | None:intergenic |
| TGGCCCAGCTCCGGAACTAC+TGG | 0.455693 | tig0020912:-39066 | Msa1387520:CDS |
| TGAAATTGTGAAAAGGGAAA+AGG | 0.458557 | tig0020912:+41707 | None:intergenic |
| AGTTTGCGGCATTATGTTGT+CGG | 0.461219 | tig0020912:-39033 | Msa1387520:three_prime_UTR |
| AAATCATTGACATTATCTTC+AGG | 0.464209 | tig0020912:+39184 | None:intergenic |
| TTAGAATTTGAATCATTGGC+TGG | 0.467238 | tig0020912:+38920 | None:intergenic |
| GCAGGAACTTAGAATGGATT+GGG | 0.476083 | tig0020912:-40319 | Msa1387520:CDS |
| TGGTGGTTTGTTTAAGAGTG+TGG | 0.483129 | tig0020912:+41641 | None:intergenic |
| CATTCGAAACCGTGCCTCCA+TGG | 0.490848 | tig0020912:-39141 | Msa1387520:CDS |
| TAGGTATGCATCTGCGCCGC+AGG | 0.492153 | tig0020912:-40337 | Msa1387520:CDS |
| TCGTGAGTGACATGAGTGTT+TGG | 0.492368 | tig0020912:+41528 | None:intergenic |
| TGATGAGATACTACTCCATA+TGG | 0.496687 | tig0020912:-39086 | Msa1387520:CDS |
| ACCATCGGAAGGACAATCTT+CGG | 0.508376 | tig0020912:+41407 | None:intergenic |
| TCTTCACCAAATGTGACAAA+AGG | 0.508839 | tig0020912:-39234 | Msa1387520:CDS |
| TATCTCATCACGGCCTTGAT+GGG | 0.511175 | tig0020912:+39099 | None:intergenic |
| TGGTTGATTTGCCTGGATAT+GGG | 0.512221 | tig0020912:-41140 | Msa1387520:intron |
| TGCGCCGCAGGAACTTAGAA+TGG | 0.519575 | tig0020912:-40325 | Msa1387520:CDS |
| TACTCCATATGGCCCAGCTC+CGG | 0.520727 | tig0020912:-39075 | Msa1387520:CDS |
| AGGATAACCTTGGTAGATGA+AGG | 0.521781 | tig0020912:+41727 | None:intergenic |
| AAGCGATGATTTCCCAACAT+TGG | 0.526481 | tig0020912:+41356 | None:intergenic |
| AAGTTAAAGCGAGTTTCTTG+CGG | 0.528038 | tig0020912:+41316 | None:intergenic |
| ACTAGTAATGTCACCCATCA+AGG | 0.529857 | tig0020912:-39112 | Msa1387520:CDS |
| AACCATACATACCCATATCC+AGG | 0.530783 | tig0020912:+41129 | None:intergenic |
| AACACGCGGACGCGGTGTTG+TGG | 0.534481 | tig0020912:+41775 | None:intergenic |
| CTGGCTCAAGCACTAGTTTG+CGG | 0.535588 | tig0020912:-39047 | Msa1387520:exon |
| GACAACGCAAGAATCTTAAA+CGG | 0.544090 | tig0020912:-41507 | Msa1387520:CDS |
| AGTTAATGATAGTTGGTACC+TGG | 0.544396 | tig0020912:-41160 | Msa1387520:CDS |
| ATAGAGTCTGCGAGAAAATG+AGG | 0.546270 | tig0020912:+41680 | None:intergenic |
| TTTCCTTAACCGGTCAACAT+TGG | 0.555418 | tig0020912:-40277 | Msa1387520:CDS |
| GATACGGTCGGTTTCTCAAG+TGG | 0.563030 | tig0020912:+41829 | None:intergenic |
| GAGCCAGTAGTTCCGGAGCT+GGG | 0.563845 | tig0020912:+39063 | None:intergenic |
| AGTAAAACATAAAGTAACTC+AGG | 0.583673 | tig0020912:+38975 | None:intergenic |
| TTGATCTTGAGTATGCTGCT+TGG | 0.585806 | tig0020912:-40209 | Msa1387520:CDS |
| ACATTACTAGTCATGATCCA+TGG | 0.586698 | tig0020912:+39124 | None:intergenic |
| AAAAGGGAAAAGGATAACCT+TGG | 0.589953 | tig0020912:+41717 | None:intergenic |
| CATATCCAGGCAAATCAACC+AGG | 0.592486 | tig0020912:+41142 | None:intergenic |
| ACCGAAGATTGTCCTTCCGA+TGG | 0.599185 | tig0020912:-41408 | Msa1387520:CDS |
| CGACCAACAAGAGCGAACTC+AGG | 0.603551 | tig0020912:+41381 | None:intergenic |
| GCTTTAACTTCAAAGAAACC+TGG | 0.605040 | tig0020912:-41303 | Msa1387520:intron |
| TATTGAGAAACACGCGGACG+CGG | 0.608258 | tig0020912:+41767 | None:intergenic |
| ATACGGTCGGTTTCTCAAGT+GGG | 0.609144 | tig0020912:+41830 | None:intergenic |
| AGACCGAAACCAATGTTGAC+CGG | 0.614690 | tig0020912:+40268 | None:intergenic |
| TGGTTGTCCTTCATCTACCA+AGG | 0.620273 | tig0020912:-41734 | Msa1387520:CDS |
| ATACCCTTAAGTATTCAAGA+TGG | 0.623327 | tig0020912:+38999 | None:intergenic |
| AGCGAACTCAGGAAGACCAT+CGG | 0.623377 | tig0020912:+41392 | None:intergenic |
| CAATCCATTCTAAGTTCCTG+CGG | 0.623495 | tig0020912:+40321 | None:intergenic |
| AGTCATGATCCATGGAGGCA+CGG | 0.640377 | tig0020912:+39132 | None:intergenic |
| TGAGTGACATGAGTGTTTGG+AGG | 0.643541 | tig0020912:+41531 | None:intergenic |
| AACTCAGGAAGACCATCGGA+AGG | 0.685453 | tig0020912:+41396 | None:intergenic |
| TATGGAGTAGTATCTCATCA+CGG | 0.704699 | tig0020912:+39089 | None:intergenic |
| ACACTCTATTGAGAAACACG+CGG | 0.774669 | tig0020912:+41761 | None:intergenic |
| TTACTAGTCATGATCCATGG+AGG | 0.783256 | tig0020912:+39127 | None:intergenic |
| GTGTTGTGGAAATATCTCAG+CGG | 0.800177 | tig0020912:+41789 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTTCGCAAATTATA+AGG | + | tig0020912:39431-39450 | None:intergenic | 15.0% |
| !!! | TTGTATATTTTTTTGTTTGT+AGG | - | tig0020912:39456-39475 | Msa1387520:intron | 15.0% |
| !!! | TGTATATTTTTTTGTTTGTA+GGG | - | tig0020912:39457-39476 | Msa1387520:intron | 15.0% |
| !!! | TTGTTTTATGTTACAAATTT+GGG | - | tig0020912:39586-39605 | Msa1387520:intron | 15.0% |
| !! | AATTTAAATATTATGAACCA+AGG | - | tig0020912:40867-40886 | Msa1387520:intron | 15.0% |
| !!! | CTTGTTTTATGTTACAAATT+TGG | - | tig0020912:39585-39604 | Msa1387520:intron | 20.0% |
| !!! | TGTTTTATGTTACAAATTTG+GGG | - | tig0020912:39587-39606 | Msa1387520:intron | 20.0% |
| !! | ATACTAACATGTTTGTATAT+TGG | + | tig0020912:39633-39652 | None:intergenic | 20.0% |
| !! | AATATACAAACATGTTAGTA+TGG | - | tig0020912:39632-39651 | Msa1387520:intron | 20.0% |
| !! | GGATTCCATTATTTATAAAA+AGG | - | tig0020912:39703-39722 | Msa1387520:intron | 20.0% |
| !! | TCCATTATTTATAAAAAGGT+TGG | - | tig0020912:39707-39726 | Msa1387520:intron | 20.0% |
| !!! | TCCAACCTTTTTATAAATAA+TGG | + | tig0020912:39711-39730 | None:intergenic | 20.0% |
| !!! | ATTTTAGTCTCATATTGTTA+AGG | - | tig0020912:39948-39967 | Msa1387520:intron | 20.0% |
| !! | GAAATTAACTCATAAAATGA+GGG | + | tig0020912:40010-40029 | None:intergenic | 20.0% |
| !! | AATTTCTTCATTAGAAAATC+TGG | - | tig0020912:40508-40527 | Msa1387520:intron | 20.0% |
| !!! | TTATTAAAAAGTACCATTCT+CGG | + | tig0020912:40644-40663 | None:intergenic | 20.0% |
| !! | TTATGATATATGAACAGATA+AGG | - | tig0020912:40815-40834 | Msa1387520:intron | 20.0% |
| !! | TATGATATATGAACAGATAA+GGG | - | tig0020912:40816-40835 | Msa1387520:intron | 20.0% |
| !!! | TCAAAATTAACTTTTCTTCA+AGG | + | tig0020912:40903-40922 | None:intergenic | 20.0% |
| !! | AGGAAAATTAAATTATACCA+GGG | + | tig0020912:41391-41410 | None:intergenic | 20.0% |
| !! | AAGGAAAATTAAATTATACC+AGG | + | tig0020912:41392-41411 | None:intergenic | 20.0% |
| !!! | GAATTTAGAATTTGAATCAT+TGG | + | tig0020912:41753-41772 | None:intergenic | 20.0% |
| !!! | AATGCATTTCATTTGATTTT+TGG | + | tig0020912:41840-41859 | None:intergenic | 20.0% |
| ! | TAGTATAATTTGAGCATCAT+TGG | + | tig0020912:39211-39230 | None:intergenic | 25.0% |
| ! | TGTAATAATAATAAGAGACC+AGG | + | tig0020912:39384-39403 | None:intergenic | 25.0% |
| !!! | ATTTTCGAGTTAATGATAGT+TGG | - | tig0020912:39499-39518 | Msa1387520:intron | 25.0% |
| ! | TAAAACAAGATTGCTTTGTA+AGG | + | tig0020912:39574-39593 | None:intergenic | 25.0% |
| ! | AATACATATATGCATTCCAT+TGG | + | tig0020912:39780-39799 | None:intergenic | 25.0% |
| ! | ATGGAATGCATATATGTATT+TGG | - | tig0020912:39780-39799 | Msa1387520:intron | 25.0% |
| ! | TATTTATGCCCTACAAAATT+CGG | + | tig0020912:39876-39895 | None:intergenic | 25.0% |
| ! | CGAAATTAACTCATAAAATG+AGG | + | tig0020912:40011-40030 | None:intergenic | 25.0% |
| ! | ACCTAATGAAAAGAACATAA+AGG | + | tig0020912:40314-40333 | None:intergenic | 25.0% |
| ! | ACATTGTTACATTGTTTACA+GGG | + | tig0020912:40614-40633 | None:intergenic | 25.0% |
| !! | TTCTTATTTAAAGTAGAGGA+GGG | + | tig0020912:41099-41118 | None:intergenic | 25.0% |
| !! | GAAGTTCTTATTTAAAGTAG+AGG | + | tig0020912:41103-41122 | None:intergenic | 25.0% |
| !! | TTGGGGTTAACAATTTATTT+TGG | - | tig0020912:41358-41377 | Msa1387520:CDS | 25.0% |
| ! | AAAAGGAAGAAGAAAAAGAA+TGG | - | tig0020912:41449-41468 | Msa1387520:CDS | 25.0% |
| ! | AAATCATTGACATTATCTTC+AGG | + | tig0020912:41485-41504 | None:intergenic | 25.0% |
| !! | AGATAATGTCAATGATTTTC+AGG | - | tig0020912:41487-41506 | Msa1387520:CDS | 25.0% |
| ! | AGTAAAACATAAAGTAACTC+AGG | + | tig0020912:41694-41713 | None:intergenic | 25.0% |
| TTTCTCAATAGAGTGTGATA+TGG | - | tig0020912:38912-38931 | Msa1387520:three_prime_UTR | 30.0% | |
| TGAAATTGTGAAAAGGGAAA+AGG | + | tig0020912:38962-38981 | None:intergenic | 30.0% | |
| GGAAGATGAAATTGTGAAAA+GGG | + | tig0020912:38968-38987 | None:intergenic | 30.0% | |
| AGGAAGATGAAATTGTGAAA+AGG | + | tig0020912:38969-38988 | None:intergenic | 30.0% | |
| ! | TTTGTTTAAGAGTGTGGTTA+AGG | + | tig0020912:39022-39041 | None:intergenic | 30.0% |
| !! | GTTATTATGGGTTCTAGATT+TGG | + | tig0020912:39075-39094 | None:intergenic | 30.0% |
| !!! | AAGAGTTTTTCGAGTGATAA+GGG | + | tig0020912:39111-39130 | None:intergenic | 30.0% |
| !! | TATGGGTATGTATGGTTTTA+AGG | - | tig0020912:39543-39562 | Msa1387520:intron | 30.0% |
| ACAAATTTGGGGATTAACAT+TGG | - | tig0020912:39598-39617 | Msa1387520:intron | 30.0% | |
| TCACATTGCCAAAAATTCTT+GGG | - | tig0020912:39754-39773 | Msa1387520:intron | 30.0% | |
| ! | TATTGGAACCGAATTTTGTA+GGG | - | tig0020912:39865-39884 | Msa1387520:intron | 30.0% |
| !! | GAGTGAAATTCTAGTTCATA+TGG | - | tig0020912:40032-40051 | Msa1387520:intron | 30.0% |
| !! | TCTGACATTTAATTTGTCTC+TGG | - | tig0020912:40141-40160 | Msa1387520:intron | 30.0% |
| GTAATCATACAAACTAGCAT+TGG | + | tig0020912:40191-40210 | None:intergenic | 30.0% | |
| TTGTAGTTATGCTGAAGAAA+AGG | + | tig0020912:40232-40251 | None:intergenic | 30.0% | |
| ! | GCCTTTATGTTCTTTTCATT+AGG | - | tig0020912:40310-40329 | Msa1387520:CDS | 30.0% |
| !! | TCAAGATCAATCTTTTTAGC+AGG | + | tig0020912:40447-40466 | None:intergenic | 30.0% |
| TTCTTCATTAGAAAATCTGG+TGG | - | tig0020912:40511-40530 | Msa1387520:intron | 30.0% | |
| CACATTGTTACATTGTTTAC+AGG | + | tig0020912:40615-40634 | None:intergenic | 30.0% | |
| GTCAACTTAAAATCAAGTGA+CGG | + | tig0020912:40695-40714 | None:intergenic | 30.0% | |
| CGTTTCTCTTCTATATAGAT+GGG | + | tig0020912:40762-40781 | None:intergenic | 30.0% | |
| TCGTTTCTCTTCTATATAGA+TGG | + | tig0020912:40763-40782 | None:intergenic | 30.0% | |
| TAGCACTTGATATACTCTAA+AGG | - | tig0020912:41037-41056 | Msa1387520:intron | 30.0% | |
| TAAAGGTCAGATCATAAAGA+AGG | - | tig0020912:41054-41073 | Msa1387520:intron | 30.0% | |
| ! | TCTTATTTAAAGTAGAGGAG+GGG | + | tig0020912:41098-41117 | None:intergenic | 30.0% |
| ! | GTTCTTATTTAAAGTAGAGG+AGG | + | tig0020912:41100-41119 | None:intergenic | 30.0% |
| ! | ATGTAGCACATATACACTTT+TGG | - | tig0020912:41157-41176 | Msa1387520:CDS | 30.0% |
| !! | TTTTGGTTGAAGTTGTGTTT+GGG | - | tig0020912:41174-41193 | Msa1387520:CDS | 30.0% |
| TCTACTAAGTAGTTAGACAT+CGG | + | tig0020912:41338-41357 | None:intergenic | 30.0% | |
| TGTCTAACTACTTAGTAGAT+TGG | - | tig0020912:41339-41358 | Msa1387520:CDS | 30.0% | |
| GTCTAACTACTTAGTAGATT+GGG | - | tig0020912:41340-41359 | Msa1387520:CDS | 30.0% | |
| TCTAACTACTTAGTAGATTG+GGG | - | tig0020912:41341-41360 | Msa1387520:CDS | 30.0% | |
| !!! | TTTATTTTGGTAATTGACCC+TGG | - | tig0020912:41371-41390 | Msa1387520:CDS | 30.0% |
| TGGTGAAGATTAATGTCATT+GGG | + | tig0020912:41421-41440 | None:intergenic | 30.0% | |
| TTGGTGAAGATTAATGTCAT+TGG | + | tig0020912:41422-41441 | None:intergenic | 30.0% | |
| TTGTCCATCTTGAATACTTA+AGG | - | tig0020912:41663-41682 | Msa1387520:CDS | 30.0% | |
| TGTCCATCTTGAATACTTAA+GGG | - | tig0020912:41664-41683 | Msa1387520:CDS | 30.0% | |
| ATACCCTTAAGTATTCAAGA+TGG | + | tig0020912:41670-41689 | None:intergenic | 30.0% | |
| TTAGAATTTGAATCATTGGC+TGG | + | tig0020912:41749-41768 | None:intergenic | 30.0% | |
| AAAAGGGAAAAGGATAACCT+TGG | + | tig0020912:38952-38971 | None:intergenic | 35.0% | |
| ! | GAAGTTGTGAGAGATGATTT+TGG | + | tig0020912:39048-39067 | None:intergenic | 35.0% |
| !!! | TCGGTTTTAGGGGTTATTAT+GGG | + | tig0020912:39087-39106 | None:intergenic | 35.0% |
| !!! | TTCGGTTTTAGGGGTTATTA+TGG | + | tig0020912:39088-39107 | None:intergenic | 35.0% |
| !!! | TTTTTCGAGTGATAAGGGTT+CGG | + | tig0020912:39106-39125 | None:intergenic | 35.0% |
| !!! | GAAGAGTTTTTCGAGTGATA+AGG | + | tig0020912:39112-39131 | None:intergenic | 35.0% |
| GACAACGCAAGAATCTTAAA+CGG | - | tig0020912:39159-39178 | Msa1387520:CDS | 35.0% | |
| AAGTTAAAGCGAGTTTCTTG+CGG | + | tig0020912:39353-39372 | None:intergenic | 35.0% | |
| ! | GCTTTAACTTCAAAGAAACC+TGG | - | tig0020912:39363-39382 | Msa1387520:intron | 35.0% |
| ! | AGTTAATGATAGTTGGTACC+TGG | - | tig0020912:39506-39525 | Msa1387520:intron | 35.0% |
| GTGTCAAACATCATAACAGT+AGG | - | tig0020912:39682-39701 | Msa1387520:intron | 35.0% | |
| CTCACATTGCCAAAAATTCT+TGG | - | tig0020912:39753-39772 | Msa1387520:intron | 35.0% | |
| AAACCCGTTTAGCATAGTAT+TGG | - | tig0020912:39848-39867 | Msa1387520:intron | 35.0% | |
| GTTCCAATACTATGCTAAAC+GGG | + | tig0020912:39854-39873 | None:intergenic | 35.0% | |
| GGTTCCAATACTATGCTAAA+CGG | + | tig0020912:39855-39874 | None:intergenic | 35.0% | |
| ! | GTATTGGAACCGAATTTTGT+AGG | - | tig0020912:39864-39883 | Msa1387520:intron | 35.0% |
| CTCATATTGTTAAGGTTCCT+TGG | - | tig0020912:39956-39975 | Msa1387520:intron | 35.0% | |
| AGCTTTCTACAAAACTGAAC+AGG | + | tig0020912:40269-40288 | None:intergenic | 35.0% | |
| CCAAAGACTATTTCCTTAAC+CGG | - | tig0020912:40379-40398 | Msa1387520:intron | 35.0% | |
| !! | AATCTTTTTAGCAGGAATGC+TGG | + | tig0020912:40439-40458 | None:intergenic | 35.0% |
| CAGGGCATGTAAAGATAAAA+TGG | + | tig0020912:40596-40615 | None:intergenic | 35.0% | |
| !!! | TTTTAAGTTGACGACATCTG+TGG | - | tig0020912:40703-40722 | Msa1387520:intron | 35.0% |
| !! | CTTCTATATAGATGGGTTGT+AGG | + | tig0020912:40755-40774 | None:intergenic | 35.0% |
| ATACTGTCATAGCACATGTT+AGG | - | tig0020912:40784-40803 | Msa1387520:intron | 35.0% | |
| !! | CTTTTGGTTGAAGTTGTGTT+TGG | - | tig0020912:41173-41192 | Msa1387520:CDS | 35.0% |
| ATAGACACTGGTAGTAATTG+AGG | + | tig0020912:41264-41283 | None:intergenic | 35.0% | |
| ! | AACAATTGACTCATAGACAC+TGG | + | tig0020912:41276-41295 | None:intergenic | 35.0% |
| TAATGTCATTGGGATCTGAA+AGG | + | tig0020912:41411-41430 | None:intergenic | 35.0% | |
| TCTTCACCAAATGTGACAAA+AGG | - | tig0020912:41432-41451 | Msa1387520:CDS | 35.0% | |
| ! | CTTCTTCCTTTTGTCACATT+TGG | + | tig0020912:41441-41460 | None:intergenic | 35.0% |
| AGGAAGAAGAAAAAGAATGG+AGG | - | tig0020912:41452-41471 | Msa1387520:CDS | 35.0% | |
| ACATTACTAGTCATGATCCA+TGG | + | tig0020912:41545-41564 | None:intergenic | 35.0% | |
| TATGGAGTAGTATCTCATCA+CGG | + | tig0020912:41580-41599 | None:intergenic | 35.0% | |
| TGATGAGATACTACTCCATA+TGG | - | tig0020912:41580-41599 | Msa1387520:CDS | 35.0% | |
| GTGTTGTGGAAATATCTCAG+CGG | + | tig0020912:38880-38899 | None:intergenic | 40.0% | |
| ACACTCTATTGAGAAACACG+CGG | + | tig0020912:38908-38927 | None:intergenic | 40.0% | |
| AGGATAACCTTGGTAGATGA+AGG | + | tig0020912:38942-38961 | None:intergenic | 40.0% | |
| ATAGAGTCTGCGAGAAAATG+AGG | + | tig0020912:38989-39008 | None:intergenic | 40.0% | |
| !! | TGGTGGTTTGTTTAAGAGTG+TGG | + | tig0020912:39028-39047 | None:intergenic | 40.0% |
| ! | GTTGTGAGAGATGATTTTGG+TGG | + | tig0020912:39045-39064 | None:intergenic | 40.0% |
| !! | TGATAAGGGTTCGGTTTTAG+GGG | + | tig0020912:39097-39116 | None:intergenic | 40.0% |
| !! | GTGATAAGGGTTCGGTTTTA+GGG | + | tig0020912:39098-39117 | None:intergenic | 40.0% |
| !! | AGTGATAAGGGTTCGGTTTT+AGG | + | tig0020912:39099-39118 | None:intergenic | 40.0% |
| TTGTTGGTCGTTCCAATGTT+GGG | - | tig0020912:39298-39317 | Msa1387520:intron | 40.0% | |
| AAGCGATGATTTCCCAACAT+TGG | + | tig0020912:39313-39332 | None:intergenic | 40.0% | |
| !! | TGGTTGATTTGCCTGGATAT+GGG | - | tig0020912:39526-39545 | Msa1387520:intron | 40.0% |
| AACCATACATACCCATATCC+AGG | + | tig0020912:39540-39559 | None:intergenic | 40.0% | |
| ! | TCCATTGGCCCAAGAATTTT+TGG | + | tig0020912:39765-39784 | None:intergenic | 40.0% |
| TCGATCTCACTCTCAAAAGT+TGG | + | tig0020912:39829-39848 | None:intergenic | 40.0% | |
| ATGTATACATTGCACAGCCA+AGG | + | tig0020912:39976-39995 | None:intergenic | 40.0% | |
| CAATCCATTCTAAGTTCCTG+CGG | + | tig0020912:40348-40367 | None:intergenic | 40.0% | |
| ! | GCAGGAACTTAGAATGGATT+GGG | - | tig0020912:40347-40366 | Msa1387520:intron | 40.0% |
| CCGGTTAAGGAAATAGTCTT+TGG | + | tig0020912:40382-40401 | None:intergenic | 40.0% | |
| TTTCCTTAACCGGTCAACAT+TGG | - | tig0020912:40389-40408 | Msa1387520:intron | 40.0% | |
| AAACCAATGTTGACCGGTTA+AGG | + | tig0020912:40395-40414 | None:intergenic | 40.0% | |
| !! | TAACCGGTCAACATTGGTTT+CGG | - | tig0020912:40395-40414 | Msa1387520:intron | 40.0% |
| TTGATCTTGAGTATGCTGCT+TGG | - | tig0020912:40457-40476 | Msa1387520:intron | 40.0% | |
| AAGAATCGATAAGAGCTGAG+CGG | - | tig0020912:40554-40573 | Msa1387520:intron | 40.0% | |
| CAATGTGTATGTACCGAGAA+TGG | - | tig0020912:40628-40647 | Msa1387520:intron | 40.0% | |
| ATTATGAACCAAGGTAAGCG+TGG | - | tig0020912:40876-40895 | Msa1387520:intron | 40.0% | |
| CGTGGCTTCTATTTAGATAG+AGG | + | tig0020912:40938-40957 | None:intergenic | 40.0% | |
| AAGAGTAGTTCATCTACACC+AGG | - | tig0020912:40995-41014 | Msa1387520:intron | 40.0% | |
| TAAAGAAGGAAAGCCTCTAG+CGG | - | tig0020912:41068-41087 | Msa1387520:intron | 40.0% | |
| CATGGAAAGTGGATCACTTA+AGG | + | tig0020912:41125-41144 | None:intergenic | 40.0% | |
| ATGTGCTACATATACTGCCT+AGG | + | tig0020912:41148-41167 | None:intergenic | 40.0% | |
| TGCGAGACAATGATATGTGT+CGG | + | tig0020912:41203-41222 | None:intergenic | 40.0% | |
| TTAGACATCGGACATAGTAG+TGG | + | tig0020912:41326-41345 | None:intergenic | 40.0% | |
| !!! | GATTTTCAGGAGTTGATACG+TGG | - | tig0020912:41500-41519 | Msa1387520:CDS | 40.0% |
| TTACTAGTCATGATCCATGG+AGG | + | tig0020912:41542-41561 | None:intergenic | 40.0% | |
| ACTAGTAATGTCACCCATCA+AGG | - | tig0020912:41554-41573 | Msa1387520:CDS | 40.0% | |
| AGTTTGCGGCATTATGTTGT+CGG | - | tig0020912:41633-41652 | Msa1387520:CDS | 40.0% | |
| ! | ATACGGTCGGTTTCTCAAGT+GGG | + | tig0020912:38839-38858 | None:intergenic | 45.0% |
| !! | GAGTGTTTTTGCTCGCGATA+CGG | + | tig0020912:38856-38875 | None:intergenic | 45.0% |
| TGGTTGTCCTTCATCTACCA+AGG | - | tig0020912:38932-38951 | Msa1387520:three_prime_UTR | 45.0% | |
| TGAGTGACATGAGTGTTTGG+AGG | + | tig0020912:39138-39157 | None:intergenic | 45.0% | |
| TCGTGAGTGACATGAGTGTT+TGG | + | tig0020912:39141-39160 | None:intergenic | 45.0% | |
| ACCATCGGAAGGACAATCTT+CGG | + | tig0020912:39262-39281 | None:intergenic | 45.0% | |
| CTTGTTGGTCGTTCCAATGT+TGG | - | tig0020912:39297-39316 | Msa1387520:intron | 45.0% | |
| CATATCCAGGCAAATCAACC+AGG | + | tig0020912:39527-39546 | None:intergenic | 45.0% | |
| !! | CTGGTTGATTTGCCTGGATA+TGG | - | tig0020912:39525-39544 | Msa1387520:intron | 45.0% |
| TGCCTGGATATGGGTATGTA+TGG | - | tig0020912:39535-39554 | Msa1387520:intron | 45.0% | |
| GCCAAAAATTCTTGGGCCAA+TGG | - | tig0020912:39761-39780 | Msa1387520:intron | 45.0% | |
| CGCAGGAACTTAGAATGGAT+TGG | - | tig0020912:40346-40365 | Msa1387520:intron | 45.0% | |
| AGACCGAAACCAATGTTGAC+CGG | + | tig0020912:40401-40420 | None:intergenic | 45.0% | |
| ! | TCTTGAGTATGCTGCTTGGT+TGG | - | tig0020912:40461-40480 | Msa1387520:intron | 45.0% |
| ! | CTTGAGTATGCTGCTTGGTT+GGG | - | tig0020912:40462-40481 | Msa1387520:intron | 45.0% |
| TGCTTGGTTGGGTGAGAATA+AGG | - | tig0020912:40473-40492 | Msa1387520:intron | 45.0% | |
| TGGTTATGTTGCGACTTGTG+TGG | - | tig0020912:40531-40550 | Msa1387520:intron | 45.0% | |
| AGTTGACGACATCTGTGGAT+CGG | - | tig0020912:40708-40727 | Msa1387520:intron | 45.0% | |
| CACAGGTTTGATGTTAGACG+TGG | + | tig0020912:40956-40975 | None:intergenic | 45.0% | |
| CAATACAGCATGAGTGACAC+AGG | + | tig0020912:40973-40992 | None:intergenic | 45.0% | |
| GTAGTTCATCTACACCAGGT+TGG | - | tig0020912:40999-41018 | Msa1387520:intron | 45.0% | |
| CTACATATACTGCCTAGGCA+TGG | + | tig0020912:41143-41162 | None:intergenic | 45.0% | |
| TATCTCATCACGGCCTTGAT+GGG | + | tig0020912:41570-41589 | None:intergenic | 45.0% | |
| !!! | AATAATTTTTAATATAGTTA+TGG | - | tig0020912:40659-40678 | Msa1387520:intron | 5.0% |
| ! | GATACGGTCGGTTTCTCAAG+TGG | + | tig0020912:38840-38859 | None:intergenic | 50.0% |
| ! | GTTTTTGCTCGCGATACGGT+CGG | + | tig0020912:38852-38871 | None:intergenic | 50.0% |
| TATTGAGAAACACGCGGACG+CGG | + | tig0020912:38902-38921 | None:intergenic | 50.0% | |
| ACCGAAGATTGTCCTTCCGA+TGG | - | tig0020912:39258-39277 | Msa1387520:intron | 50.0% | |
| AACTCAGGAAGACCATCGGA+AGG | + | tig0020912:39273-39292 | None:intergenic | 50.0% | |
| AGCGAACTCAGGAAGACCAT+CGG | + | tig0020912:39277-39296 | None:intergenic | 50.0% | |
| CTTCCTGAGTTCGCTCTTGT+TGG | - | tig0020912:39282-39301 | Msa1387520:intron | 50.0% | |
| !! | TGGTACCTGGTTGATTTGCC+TGG | - | tig0020912:39519-39538 | Msa1387520:intron | 50.0% |
| GGCTTCTAGATGAGCAAAGC+CGG | + | tig0020912:40734-40753 | None:intergenic | 50.0% | |
| TTCAAGGTCCACGCTTACCT+TGG | + | tig0020912:40887-40906 | None:intergenic | 50.0% | |
| TGCAGCTTGATTGTCCAACC+TGG | + | tig0020912:41016-41035 | None:intergenic | 50.0% | |
| GTGATCCACTTTCCATGCCT+AGG | - | tig0020912:41128-41147 | Msa1387520:intron | 50.0% | |
| TACTGCCTAGGCATGGAAAG+TGG | + | tig0020912:41136-41155 | None:intergenic | 50.0% | |
| AGTCATGATCCATGGAGGCA+CGG | + | tig0020912:41537-41556 | None:intergenic | 50.0% | |
| GTATCTCATCACGGCCTTGA+TGG | + | tig0020912:41571-41590 | None:intergenic | 50.0% | |
| AGTGCTTGAGCCAGTAGTTC+CGG | + | tig0020912:41613-41632 | None:intergenic | 50.0% | |
| ! | CTGGCTCAAGCACTAGTTTG+CGG | - | tig0020912:41619-41638 | Msa1387520:CDS | 50.0% |
| CGGCATTATGTTGTCGGAGT+TGG | - | tig0020912:41639-41658 | Msa1387520:CDS | 50.0% | |
| CGACCAACAAGAGCGAACTC+AGG | + | tig0020912:39288-39307 | None:intergenic | 55.0% | |
| TCAATACCCATGCTCGCGTG+TGG | + | tig0020912:39922-39941 | None:intergenic | 55.0% | |
| TGCGCCGCAGGAACTTAGAA+TGG | - | tig0020912:40341-40360 | Msa1387520:intron | 55.0% | |
| CATTCGAAACCGTGCCTCCA+TGG | - | tig0020912:41525-41544 | Msa1387520:CDS | 55.0% | |
| TACTCCATATGGCCCAGCTC+CGG | - | tig0020912:41591-41610 | Msa1387520:CDS | 55.0% | |
| CTCGCGTGTGGTGTGGGTTT+AGG | + | tig0020912:39910-39929 | None:intergenic | 60.0% | |
| TAGGTATGCATCTGCGCCGC+AGG | - | tig0020912:40329-40348 | Msa1387520:CDS | 60.0% | |
| GACGACATCTGTGGATCGGC+CGG | - | tig0020912:40712-40731 | Msa1387520:intron | 60.0% | |
| GAGGAGGGGTAAACCGCTAG+AGG | + | tig0020912:41084-41103 | None:intergenic | 60.0% | |
| AGTTCCGGAGCTGGGCCATA+TGG | + | tig0020912:41598-41617 | None:intergenic | 60.0% | |
| GAGCCAGTAGTTCCGGAGCT+GGG | + | tig0020912:41606-41625 | None:intergenic | 60.0% | |
| TGAGCCAGTAGTTCCGGAGC+TGG | + | tig0020912:41607-41626 | None:intergenic | 60.0% | |
| ! | AACACGCGGACGCGGTGTTG+TGG | + | tig0020912:38894-38913 | None:intergenic | 65.0% |
| ACCCACACCACACGCGAGCA+TGG | - | tig0020912:39912-39931 | Msa1387520:intron | 65.0% | |
| CCCATGCTCGCGTGTGGTGT+GGG | + | tig0020912:39916-39935 | None:intergenic | 65.0% | |
| CCCACACCACACGCGAGCAT+GGG | - | tig0020912:39913-39932 | Msa1387520:intron | 65.0% | |
| ACCCATGCTCGCGTGTGGTG+TGG | + | tig0020912:39917-39936 | None:intergenic | 65.0% | |
| TGGCCCAGCTCCGGAACTAC+TGG | - | tig0020912:41600-41619 | Msa1387520:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020912 | gene | 38827 | 41861 | 38827 | ID=Msa1387520;Name=Msa1387520 |
| tig0020912 | mRNA | 38827 | 41861 | 38827 | ID=Msa1387520-mRNA-1;Parent=Msa1387520;Name=Msa1387520-mRNA-1;_AED=0.04;_eAED=0.04;_QI=104|1|1|1|1|1|4|227|301 |
| tig0020912 | exon | 38827 | 39272 | 38827 | ID=Msa1387520-mRNA-1:exon:10688;Parent=Msa1387520-mRNA-1 |
| tig0020912 | exon | 40194 | 40356 | 40194 | ID=Msa1387520-mRNA-1:exon:10687;Parent=Msa1387520-mRNA-1 |
| tig0020912 | exon | 41141 | 41210 | 41141 | ID=Msa1387520-mRNA-1:exon:10686;Parent=Msa1387520-mRNA-1 |
| tig0020912 | exon | 41304 | 41861 | 41304 | ID=Msa1387520-mRNA-1:exon:10685;Parent=Msa1387520-mRNA-1 |
| tig0020912 | five_prime_UTR | 41758 | 41861 | 41758 | ID=Msa1387520-mRNA-1:five_prime_utr;Parent=Msa1387520-mRNA-1 |
| tig0020912 | CDS | 41304 | 41757 | 41304 | ID=Msa1387520-mRNA-1:cds;Parent=Msa1387520-mRNA-1 |
| tig0020912 | CDS | 41141 | 41210 | 41141 | ID=Msa1387520-mRNA-1:cds;Parent=Msa1387520-mRNA-1 |
| tig0020912 | CDS | 40194 | 40356 | 40194 | ID=Msa1387520-mRNA-1:cds;Parent=Msa1387520-mRNA-1 |
| tig0020912 | CDS | 39054 | 39272 | 39054 | ID=Msa1387520-mRNA-1:cds;Parent=Msa1387520-mRNA-1 |
| tig0020912 | three_prime_UTR | 38827 | 39053 | 38827 | ID=Msa1387520-mRNA-1:three_prime_utr;Parent=Msa1387520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
