Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521570 | XP_003603604.1 | 98.339 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 0.0 | 611 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521570 | sp|O81004|Y2287_ARATH | 59.829 | 234 | 91 | 2 | 66 | 298 | 67 | 298 | 1.67e-101 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521570 | G7J3E8 | 98.339 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 0.0 | 611 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012380 | Msa0521570 | 0.803684 | 3.100230e-49 | -8.615850e-47 |
| Msa0046050 | Msa0521570 | 0.809222 | 2.104657e-50 | -8.615850e-47 |
| Msa0080810 | Msa0521570 | 0.807731 | 4.381101e-50 | -8.615850e-47 |
| Msa0096020 | Msa0521570 | 0.806760 | 7.033433e-50 | -8.615850e-47 |
| Msa0140290 | Msa0521570 | 0.808683 | 2.745005e-50 | -8.615850e-47 |
| Msa0187980 | Msa0521570 | 0.801160 | 1.026429e-48 | -8.615850e-47 |
| Msa0233200 | Msa0521570 | 0.812704 | 3.708770e-51 | -8.615850e-47 |
| Msa0373220 | Msa0521570 | 0.808478 | 3.036078e-50 | -8.615850e-47 |
| Msa0378390 | Msa0521570 | -0.803162 | 3.976301e-49 | -8.615850e-47 |
| Msa0380520 | Msa0521570 | 0.810096 | 1.365746e-50 | -8.615850e-47 |
| Msa0388200 | Msa0521570 | 0.999621 | 0.000000e+00 | -8.615850e-47 |
| Msa0392050 | Msa0521570 | 0.803536 | 3.326928e-49 | -8.615850e-47 |
| Msa0404070 | Msa0521570 | 0.804542 | 2.054602e-49 | -8.615850e-47 |
| Msa0415200 | Msa0521570 | 0.804636 | 1.964100e-49 | -8.615850e-47 |
| Msa0427740 | Msa0521570 | -0.816978 | 4.184049e-52 | -8.615850e-47 |
| Msa0427970 | Msa0521570 | -0.820024 | 8.535228e-53 | -8.615850e-47 |
| Msa0430020 | Msa0521570 | 0.811207 | 7.858116e-51 | -8.615850e-47 |
| Msa0433670 | Msa0521570 | 0.971273 | 6.632336e-133 | -8.615850e-47 |
| Msa0437550 | Msa0521570 | 0.803010 | 4.274172e-49 | -8.615850e-47 |
| Msa0437790 | Msa0521570 | 0.818026 | 2.429155e-52 | -8.615850e-47 |
| Msa0468020 | Msa0521570 | 0.801576 | 8.434662e-49 | -8.615850e-47 |
| Msa0469950 | Msa0521570 | 0.806169 | 9.373755e-50 | -8.615850e-47 |
| Msa0477550 | Msa0521570 | 0.970204 | 2.910283e-131 | -8.615850e-47 |
| Msa0480430 | Msa0521570 | 0.807550 | 4.785587e-50 | -8.615850e-47 |
| Msa0253160 | Msa0521570 | 0.812167 | 4.857973e-51 | -8.615850e-47 |
| Msa0291940 | Msa0521570 | 0.813820 | 2.109649e-51 | -8.615850e-47 |
| Msa0303440 | Msa0521570 | 0.808757 | 2.648082e-50 | -8.615850e-47 |
| Msa0303500 | Msa0521570 | 0.800182 | 1.624855e-48 | -8.615850e-47 |
| Msa0344680 | Msa0521570 | 0.800862 | 1.180725e-48 | -8.615850e-47 |
| Msa0485210 | Msa0521570 | 0.801240 | 9.882787e-49 | -8.615850e-47 |
| Msa0518570 | Msa0521570 | -0.818650 | 1.755175e-52 | -8.615850e-47 |
| Msa0519060 | Msa0521570 | 0.801653 | 8.134374e-49 | -8.615850e-47 |
| Msa0521570 | Msa0524960 | 0.818063 | 2.383689e-52 | -8.615850e-47 |
| Msa0521570 | Msa0577050 | 0.829880 | 4.018937e-55 | -8.615850e-47 |
| Msa0521570 | Msa0579360 | 0.802434 | 5.620677e-49 | -8.615850e-47 |
| Msa0521570 | Msa0580540 | 0.808093 | 3.668112e-50 | -8.615850e-47 |
| Msa0521570 | Msa0605250 | 0.800834 | 1.196463e-48 | -8.615850e-47 |
| Msa0521570 | Msa0610360 | 0.804597 | 2.001355e-49 | -8.615850e-47 |
| Msa0521570 | Msa0610780 | 0.801912 | 7.196469e-49 | -8.615850e-47 |
| Msa0521570 | Msa0610810 | 0.823506 | 1.335622e-53 | -8.615850e-47 |
| Msa0521570 | Msa0614980 | 0.844958 | 5.474391e-59 | -8.615850e-47 |
| Msa0521570 | Msa0619390 | 0.812802 | 3.529454e-51 | -8.615850e-47 |
| Msa0521570 | Msa0621780 | 0.806164 | 9.393640e-50 | -8.615850e-47 |
| Msa0521570 | Msa0622250 | 0.824628 | 7.280930e-54 | -8.615850e-47 |
| Msa0521570 | Msa0650890 | 0.805437 | 1.335596e-49 | -8.615850e-47 |
| Msa0521570 | Msa0651310 | 0.821170 | 4.655763e-53 | -8.615850e-47 |
| Msa0521570 | Msa0679780 | 0.811532 | 6.678984e-51 | -8.615850e-47 |
| Msa0521570 | Msa0693400 | 0.800146 | 1.652888e-48 | -8.615850e-47 |
| Msa0521570 | Msa0693500 | 0.822013 | 2.971915e-53 | -8.615850e-47 |
| Msa0521570 | Msa0705810 | 0.832842 | 7.503559e-56 | -8.615850e-47 |
| Msa0521570 | Msa0713210 | 0.805924 | 1.055552e-49 | -8.615850e-47 |
| Msa0521570 | Msa0713220 | 0.822777 | 1.975808e-53 | -8.615850e-47 |
| Msa0521570 | Msa0716600 | -0.800425 | 1.449890e-48 | -8.615850e-47 |
| Msa0521570 | Msa0747900 | 0.805842 | 1.098042e-49 | -8.615850e-47 |
| Msa0521570 | Msa0748330 | 0.819692 | 1.016102e-52 | -8.615850e-47 |
| Msa0521570 | Msa0748980 | 0.833849 | 4.211177e-56 | -8.615850e-47 |
| Msa0521570 | Msa0790640 | 0.833030 | 6.737586e-56 | -8.615850e-47 |
| Msa0521570 | Msa0793100 | 0.828107 | 1.080533e-54 | -8.615850e-47 |
| Msa0521570 | Msa0795710 | 0.806688 | 7.283448e-50 | -8.615850e-47 |
| Msa0521570 | Msa0825520 | 0.835223 | 1.901807e-56 | -8.615850e-47 |
| Msa0521570 | Msa0864730 | 0.840869 | 6.705473e-58 | -8.615850e-47 |
| Msa0521570 | Msa0864750 | 0.839327 | 1.692948e-57 | -8.615850e-47 |
| Msa0521570 | Msa0888900 | 0.816463 | 5.460114e-52 | -8.615850e-47 |
| Msa0521570 | Msa0899130 | 0.829166 | 5.991454e-55 | -8.615850e-47 |
| Msa0521570 | Msa0904630 | 0.807637 | 4.585508e-50 | -8.615850e-47 |
| Msa0521570 | Msa0936650 | 0.801779 | 7.664120e-49 | -8.615850e-47 |
| Msa0521570 | Msa0968960 | 0.804376 | 2.225201e-49 | -8.615850e-47 |
| Msa0521570 | Msa0973890 | 0.844322 | 8.120311e-59 | -8.615850e-47 |
| Msa0521570 | Msa1036020 | -0.815633 | 8.364608e-52 | -8.615850e-47 |
| Msa0521570 | Msa1067910 | 0.822089 | 2.854251e-53 | -8.615850e-47 |
| Msa0521570 | Msa1076520 | 0.801082 | 1.064873e-48 | -8.615850e-47 |
| Msa0521570 | Msa1077940 | -0.806531 | 7.863826e-50 | -8.615850e-47 |
| Msa0521570 | Msa1078300 | -0.801659 | 8.110215e-49 | -8.615850e-47 |
| Msa0521570 | Msa1078600 | 0.803819 | 2.905298e-49 | -8.615850e-47 |
| Msa0521570 | Msa1134560 | 0.801157 | 1.028128e-48 | -8.615850e-47 |
| Msa0521570 | Msa1144730 | 0.804013 | 2.648910e-49 | -8.615850e-47 |
| Msa0521570 | Msa1158090 | 0.817979 | 2.489632e-52 | -8.615850e-47 |
| Msa0521570 | Msa1184010 | 0.800637 | 1.312987e-48 | -8.615850e-47 |
| Msa0521570 | Msa1202220 | 0.804261 | 2.351026e-49 | -8.615850e-47 |
| Msa0521570 | Msa1219780 | -0.851083 | 1.117927e-60 | -8.615850e-47 |
| Msa0521570 | Msa1220680 | 0.807322 | 5.348527e-50 | -8.615850e-47 |
| Msa0521570 | Msa1222030 | -0.810651 | 1.036913e-50 | -8.615850e-47 |
| Msa0521570 | Msa1224820 | 0.807360 | 5.251718e-50 | -8.615850e-47 |
| Msa0521570 | Msa1228350 | 0.813426 | 2.574732e-51 | -8.615850e-47 |
| Msa0521570 | Msa1237750 | 0.808048 | 3.750181e-50 | -8.615850e-47 |
| Msa0521570 | Msa1255020 | 0.811872 | 5.632096e-51 | -8.615850e-47 |
| Msa0521570 | Msa1258100 | 0.815888 | 7.340616e-52 | -8.615850e-47 |
| Msa0521570 | Msa1263590 | 0.825399 | 4.789076e-54 | -8.615850e-47 |
| Msa0521570 | Msa1263670 | 0.822179 | 2.719781e-53 | -8.615850e-47 |
| Msa0521570 | Msa1266710 | -0.842662 | 2.254572e-58 | -8.615850e-47 |
| Msa0521570 | Msa1272950 | 0.803843 | 2.873366e-49 | -8.615850e-47 |
| Msa0521570 | Msa1288970 | 0.802405 | 5.698451e-49 | -8.615850e-47 |
| Msa0521570 | Msa1295470 | 0.809799 | 1.582387e-50 | -8.615850e-47 |
| Msa0521570 | Msa1349640 | 0.800938 | 1.139699e-48 | -8.615850e-47 |
| Msa0521570 | Msa1349810 | 0.836253 | 1.042734e-56 | -8.615850e-47 |
| Msa0521570 | Msa1358340 | 0.807108 | 5.938047e-50 | -8.615850e-47 |
| Msa0521570 | Msa1363690 | -0.852409 | 4.704118e-61 | -8.615850e-47 |
| Msa0521570 | Msa1364850 | 0.800295 | 1.541354e-48 | -8.615850e-47 |
| Msa0521570 | Msa1368980 | 0.811056 | 8.471659e-51 | -8.615850e-47 |
| Msa0521570 | Msa1369180 | 0.829248 | 5.723525e-55 | -8.615850e-47 |
| Msa0521570 | Msa1370930 | -0.800797 | 1.217793e-48 | -8.615850e-47 |
| Msa0521570 | Msa1373390 | 0.824591 | 7.430053e-54 | -8.615850e-47 |
| Msa0521570 | Msa1384620 | 0.832823 | 7.584656e-56 | -8.615850e-47 |
| Msa0521570 | Msa1387520 | 0.999510 | 6.330809e-318 | -8.615850e-47 |
| Msa0521570 | Msa1388610 | 0.806910 | 6.539309e-50 | -8.615850e-47 |
| Msa0521570 | Msa1395580 | 0.825726 | 4.004859e-54 | -8.615850e-47 |
| Msa0521570 | Msa1396550 | -0.849835 | 2.505467e-60 | -8.615850e-47 |
| Msa0521570 | Msa1403950 | 0.800599 | 1.336280e-48 | -8.615850e-47 |
| Msa0521570 | Msa1405380 | 0.807397 | 5.156978e-50 | -8.615850e-47 |
| Msa0521570 | Msa1407210 | -0.849308 | 3.513696e-60 | -8.615850e-47 |
| Msa0521570 | Msa1409060 | -0.807188 | 5.709201e-50 | -8.615850e-47 |
| Msa0521570 | Msa1420600 | 0.800054 | 1.725587e-48 | -8.615850e-47 |
| Msa0521570 | Msa1423660 | -0.819681 | 1.022176e-52 | -8.615850e-47 |
| Msa0521570 | Msa1425540 | 0.802086 | 6.627374e-49 | -8.615850e-47 |
| Msa0521570 | Msa1427600 | 0.822355 | 2.476504e-53 | -8.615850e-47 |
| Msa0521570 | Msa1430630 | 0.801803 | 7.579559e-49 | -8.615850e-47 |
| Msa0521570 | Msa1434660 | 0.804216 | 2.402688e-49 | -8.615850e-47 |
| Msa0521570 | Msa1435690 | 0.802069 | 6.681084e-49 | -8.615850e-47 |
| Msa0521570 | Msa1439070 | 0.801553 | 8.528681e-49 | -8.615850e-47 |
| Msa0521570 | Msa1443550 | 0.802477 | 5.507530e-49 | -8.615850e-47 |
| Msa0521570 | Msa1453540 | 0.810326 | 1.218361e-50 | -8.615850e-47 |
| Msa0521570 | Msa1462600 | 0.814962 | 1.179335e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521570 | MtrunA17_Chr3g0139461 | 98.339 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 0.0 | 611 |
| Msa0521570 | MtrunA17_Chr4g0047261 | 61.966 | 234 | 86 | 2 | 66 | 298 | 64 | 295 | 1.09e-103 | 305 |
| Msa0521570 | MtrunA17_Chr3g0107041 | 40.000 | 155 | 88 | 1 | 86 | 240 | 461 | 610 | 7.78e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521570 | AT5G11480.1 | 66.458 | 319 | 88 | 4 | 1 | 301 | 1 | 318 | 1.62e-136 | 389 |
| Msa0521570 | AT2G22870.1 | 59.829 | 234 | 91 | 2 | 66 | 298 | 67 | 298 | 1.69e-102 | 302 |
| Msa0521570 | AT5G58370.1 | 40.580 | 138 | 81 | 1 | 103 | 240 | 274 | 410 | 5.51e-23 | 98.6 |
| Msa0521570 | AT5G58370.3 | 40.580 | 138 | 81 | 1 | 103 | 240 | 274 | 410 | 6.13e-23 | 98.6 |
| Msa0521570 | AT5G58370.2 | 40.580 | 138 | 81 | 1 | 103 | 240 | 274 | 410 | 6.13e-23 | 98.6 |
Find 82 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATTATGGGTTCTAGATT+TGG | 0.286082 | 3_4:+74477346 | None:intergenic |
| CTGGTTGATTTGCCTGGATA+TGG | 0.290721 | 3_4:-74476894 | Msa0521570:CDS |
| TTGTCCATCTTGAATACTTA+AGG | 0.298374 | 3_4:-74474755 | Msa0521570:three_prime_UTR |
| CCGGTTAAGGAAATAGTCTT+TGG | 0.322070 | 3_4:+74476039 | None:intergenic |
| CTTCCTGAGTTCGCTCTTGT+TGG | 0.347167 | 3_4:-74477136 | Msa0521570:CDS |
| CCAAAGACTATTTCCTTAAC+CGG | 0.351830 | 3_4:-74476039 | Msa0521570:CDS |
| GAATTTAGAATTTGAATCAT+TGG | 0.361774 | 3_4:+74474668 | None:intergenic |
| TAACCGGTCAACATTGGTTT+CGG | 0.367527 | 3_4:-74476023 | Msa0521570:CDS |
| AAACCAATGTTGACCGGTTA+AGG | 0.367559 | 3_4:+74476026 | None:intergenic |
| TTGGTGAAGATTAATGTCAT+TGG | 0.374167 | 3_4:+74474999 | None:intergenic |
| CGGCATTATGTTGTCGGAGT+TGG | 0.377561 | 3_4:-74474779 | Msa0521570:three_prime_UTR |
| TGAGCCAGTAGTTCCGGAGC+TGG | 0.377582 | 3_4:+74474814 | None:intergenic |
| CTTGTTGGTCGTTCCAATGT+TGG | 0.388640 | 3_4:-74477121 | Msa0521570:CDS |
| GGAAGATGAAATTGTGAAAA+GGG | 0.394291 | 3_4:+74477453 | None:intergenic |
| AGTGCTTGAGCCAGTAGTTC+CGG | 0.398592 | 3_4:+74474808 | None:intergenic |
| CTTGAGTATGCTGCTTGGTT+GGG | 0.404038 | 3_4:-74475956 | Msa0521570:CDS |
| TGCTTGGTTGGGTGAGAATA+AGG | 0.405086 | 3_4:-74475945 | Msa0521570:intron |
| GAAGTTGTGAGAGATGATTT+TGG | 0.405539 | 3_4:+74477373 | None:intergenic |
| TTTGTTTAAGAGTGTGGTTA+AGG | 0.415649 | 3_4:+74477399 | None:intergenic |
| TGGTGAAGATTAATGTCATT+GGG | 0.416483 | 3_4:+74475000 | None:intergenic |
| AGGAAGATGAAATTGTGAAA+AGG | 0.418757 | 3_4:+74477452 | None:intergenic |
| TTGTTGGTCGTTCCAATGTT+GGG | 0.429746 | 3_4:-74477120 | Msa0521570:CDS |
| TCTTGAGTATGCTGCTTGGT+TGG | 0.431152 | 3_4:-74475957 | Msa0521570:CDS |
| TGTCCATCTTGAATACTTAA+GGG | 0.437140 | 3_4:-74474754 | Msa0521570:three_prime_UTR |
| TGGTACCTGGTTGATTTGCC+TGG | 0.439670 | 3_4:-74476900 | Msa0521570:CDS |
| AGTTCCGGAGCTGGGCCATA+TGG | 0.447478 | 3_4:+74474823 | None:intergenic |
| TAGTATAATTTGAGCATCAT+TGG | 0.450984 | 3_4:+74477210 | None:intergenic |
| TTTCTCAATAGAGTGTGATA+TGG | 0.453137 | 3_4:-74477506 | Msa0521570:exon |
| CGCAGGAACTTAGAATGGAT+TGG | 0.455183 | 3_4:-74476072 | Msa0521570:CDS |
| GTATCTCATCACGGCCTTGA+TGG | 0.455440 | 3_4:+74474850 | None:intergenic |
| TGGCCCAGCTCCGGAACTAC+TGG | 0.455693 | 3_4:-74474818 | Msa0521570:CDS |
| TGAAATTGTGAAAAGGGAAA+AGG | 0.458557 | 3_4:+74477459 | None:intergenic |
| AGTTTGCGGCATTATGTTGT+CGG | 0.461219 | 3_4:-74474785 | Msa0521570:three_prime_UTR |
| AAATCATTGACATTATCTTC+AGG | 0.464209 | 3_4:+74474936 | None:intergenic |
| TTAGAATTTGAATCATTGGC+TGG | 0.467238 | 3_4:+74474672 | None:intergenic |
| GCAGGAACTTAGAATGGATT+GGG | 0.476083 | 3_4:-74476071 | Msa0521570:CDS |
| TGGTGGTTTGTTTAAGAGTG+TGG | 0.483129 | 3_4:+74477393 | None:intergenic |
| CATTCGAAACCGTGCCTCCA+TGG | 0.490848 | 3_4:-74474893 | Msa0521570:CDS |
| TAGGTATGCATCTGCGCCGC+AGG | 0.492153 | 3_4:-74476089 | Msa0521570:CDS |
| TCGTGAGTGACATGAGTGTT+TGG | 0.492368 | 3_4:+74477280 | None:intergenic |
| TGATGAGATACTACTCCATA+TGG | 0.496687 | 3_4:-74474838 | Msa0521570:CDS |
| ACCATCGGAAGGACAATCTT+CGG | 0.508376 | 3_4:+74477159 | None:intergenic |
| TCTTCACCAAATGTGACAAA+AGG | 0.508839 | 3_4:-74474986 | Msa0521570:CDS |
| TATCTCATCACGGCCTTGAT+GGG | 0.511175 | 3_4:+74474851 | None:intergenic |
| TGGTTGATTTGCCTGGATAT+GGG | 0.512221 | 3_4:-74476893 | Msa0521570:intron |
| TGCGCCGCAGGAACTTAGAA+TGG | 0.519575 | 3_4:-74476077 | Msa0521570:CDS |
| TACTCCATATGGCCCAGCTC+CGG | 0.520727 | 3_4:-74474827 | Msa0521570:CDS |
| AGGATAACCTTGGTAGATGA+AGG | 0.521781 | 3_4:+74477479 | None:intergenic |
| AAGCGATGATTTCCCAACAT+TGG | 0.526481 | 3_4:+74477108 | None:intergenic |
| AAGTTAAAGCGAGTTTCTTG+CGG | 0.528038 | 3_4:+74477068 | None:intergenic |
| ACTAGTAATGTCACCCATCA+AGG | 0.529857 | 3_4:-74474864 | Msa0521570:CDS |
| AACCATACATACCCATATCC+AGG | 0.530783 | 3_4:+74476882 | None:intergenic |
| AACACGCGGACGCGGTGTTG+TGG | 0.534481 | 3_4:+74477527 | None:intergenic |
| CTGGCTCAAGCACTAGTTTG+CGG | 0.535588 | 3_4:-74474799 | Msa0521570:exon |
| GACAACGCAAGAATCTTAAA+CGG | 0.544090 | 3_4:-74477259 | Msa0521570:CDS |
| AGTTAATGATAGTTGGTACC+TGG | 0.544396 | 3_4:-74476913 | Msa0521570:CDS |
| ATAGAGTCTGCGAGAAAATG+AGG | 0.546270 | 3_4:+74477432 | None:intergenic |
| TTTCCTTAACCGGTCAACAT+TGG | 0.555418 | 3_4:-74476029 | Msa0521570:CDS |
| GATACGGTCGGTTTCTCAAG+TGG | 0.563030 | 3_4:+74477581 | None:intergenic |
| GAGCCAGTAGTTCCGGAGCT+GGG | 0.563845 | 3_4:+74474815 | None:intergenic |
| AGTAAAACATAAAGTAACTC+AGG | 0.583673 | 3_4:+74474727 | None:intergenic |
| TTGATCTTGAGTATGCTGCT+TGG | 0.585806 | 3_4:-74475961 | Msa0521570:CDS |
| ACATTACTAGTCATGATCCA+TGG | 0.586698 | 3_4:+74474876 | None:intergenic |
| AAAAGGGAAAAGGATAACCT+TGG | 0.589953 | 3_4:+74477469 | None:intergenic |
| CATATCCAGGCAAATCAACC+AGG | 0.592486 | 3_4:+74476895 | None:intergenic |
| ACCGAAGATTGTCCTTCCGA+TGG | 0.599185 | 3_4:-74477160 | Msa0521570:CDS |
| CGACCAACAAGAGCGAACTC+AGG | 0.603551 | 3_4:+74477133 | None:intergenic |
| GCTTTAACTTCAAAGAAACC+TGG | 0.605040 | 3_4:-74477055 | Msa0521570:intron |
| TATTGAGAAACACGCGGACG+CGG | 0.608258 | 3_4:+74477519 | None:intergenic |
| ATACGGTCGGTTTCTCAAGT+GGG | 0.609144 | 3_4:+74477582 | None:intergenic |
| AGACCGAAACCAATGTTGAC+CGG | 0.614690 | 3_4:+74476020 | None:intergenic |
| TGGTTGTCCTTCATCTACCA+AGG | 0.620273 | 3_4:-74477486 | Msa0521570:CDS |
| ATACCCTTAAGTATTCAAGA+TGG | 0.623327 | 3_4:+74474751 | None:intergenic |
| AGCGAACTCAGGAAGACCAT+CGG | 0.623377 | 3_4:+74477144 | None:intergenic |
| CAATCCATTCTAAGTTCCTG+CGG | 0.623495 | 3_4:+74476073 | None:intergenic |
| AGTCATGATCCATGGAGGCA+CGG | 0.640377 | 3_4:+74474884 | None:intergenic |
| TGAGTGACATGAGTGTTTGG+AGG | 0.643541 | 3_4:+74477283 | None:intergenic |
| AACTCAGGAAGACCATCGGA+AGG | 0.685453 | 3_4:+74477148 | None:intergenic |
| TATGGAGTAGTATCTCATCA+CGG | 0.704699 | 3_4:+74474841 | None:intergenic |
| ACACTCTATTGAGAAACACG+CGG | 0.774669 | 3_4:+74477513 | None:intergenic |
| TTACTAGTCATGATCCATGG+AGG | 0.783256 | 3_4:+74474879 | None:intergenic |
| GTGTTGTGGAAATATCTCAG+CGG | 0.800177 | 3_4:+74477541 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTTCGCAAATTATA+AGG | + | chr3_4:74475182-74475201 | None:intergenic | 15.0% |
| !!! | TTGTATATTTTTTTGTTTGT+AGG | - | chr3_4:74475207-74475226 | Msa0521570:intron | 15.0% |
| !!! | TGTATATTTTTTTGTTTGTA+GGG | - | chr3_4:74475208-74475227 | Msa0521570:intron | 15.0% |
| !!! | TTGTTTTATGTTACAAATTT+GGG | - | chr3_4:74475337-74475356 | Msa0521570:intron | 15.0% |
| !! | AATTTAAATATTATGAACCA+AGG | - | chr3_4:74476619-74476638 | Msa0521570:intron | 15.0% |
| !!! | CTTGTTTTATGTTACAAATT+TGG | - | chr3_4:74475336-74475355 | Msa0521570:intron | 20.0% |
| !!! | TGTTTTATGTTACAAATTTG+GGG | - | chr3_4:74475338-74475357 | Msa0521570:intron | 20.0% |
| !! | ATACTAACATGTTTGTATAT+TGG | + | chr3_4:74475384-74475403 | None:intergenic | 20.0% |
| !! | AATATACAAACATGTTAGTA+TGG | - | chr3_4:74475383-74475402 | Msa0521570:intron | 20.0% |
| !! | GGATTCCATTATTTATAAAA+AGG | - | chr3_4:74475454-74475473 | Msa0521570:intron | 20.0% |
| !! | TCCATTATTTATAAAAAGGT+TGG | - | chr3_4:74475458-74475477 | Msa0521570:intron | 20.0% |
| !!! | TCCAACCTTTTTATAAATAA+TGG | + | chr3_4:74475462-74475481 | None:intergenic | 20.0% |
| !!! | ATTTTAGTCTCATATTGTTA+AGG | - | chr3_4:74475699-74475718 | Msa0521570:intron | 20.0% |
| !! | GAAATTAACTCATAAAATGA+GGG | + | chr3_4:74475761-74475780 | None:intergenic | 20.0% |
| !! | AATTTCTTCATTAGAAAATC+TGG | - | chr3_4:74476260-74476279 | Msa0521570:intron | 20.0% |
| !!! | TTATTAAAAAGTACCATTCT+CGG | + | chr3_4:74476396-74476415 | None:intergenic | 20.0% |
| !! | TTATGATATATGAACAGATA+AGG | - | chr3_4:74476567-74476586 | Msa0521570:intron | 20.0% |
| !! | TATGATATATGAACAGATAA+GGG | - | chr3_4:74476568-74476587 | Msa0521570:intron | 20.0% |
| !!! | TCAAAATTAACTTTTCTTCA+AGG | + | chr3_4:74476655-74476674 | None:intergenic | 20.0% |
| !! | AGGAAAATTAAATTATACCA+GGG | + | chr3_4:74477143-74477162 | None:intergenic | 20.0% |
| !! | AAGGAAAATTAAATTATACC+AGG | + | chr3_4:74477144-74477163 | None:intergenic | 20.0% |
| !!! | GAATTTAGAATTTGAATCAT+TGG | + | chr3_4:74477505-74477524 | None:intergenic | 20.0% |
| !!! | AATGCATTTCATTTGATTTT+TGG | + | chr3_4:74477592-74477611 | None:intergenic | 20.0% |
| ! | TAGTATAATTTGAGCATCAT+TGG | + | chr3_4:74474963-74474982 | None:intergenic | 25.0% |
| ! | TGTAATAATAATAAGAGACC+AGG | + | chr3_4:74475136-74475155 | None:intergenic | 25.0% |
| !!! | ATTTTCGAGTTAATGATAGT+TGG | - | chr3_4:74475250-74475269 | Msa0521570:intron | 25.0% |
| ! | TAAAACAAGATTGCTTTGTA+AGG | + | chr3_4:74475325-74475344 | None:intergenic | 25.0% |
| ! | AATACATATATGCATTCCAT+TGG | + | chr3_4:74475531-74475550 | None:intergenic | 25.0% |
| ! | ATGGAATGCATATATGTATT+TGG | - | chr3_4:74475531-74475550 | Msa0521570:intron | 25.0% |
| ! | TATTTATGCCCTACAAAATT+CGG | + | chr3_4:74475627-74475646 | None:intergenic | 25.0% |
| ! | CGAAATTAACTCATAAAATG+AGG | + | chr3_4:74475762-74475781 | None:intergenic | 25.0% |
| ! | ACCTAATGAAAAGAACATAA+AGG | + | chr3_4:74476066-74476085 | None:intergenic | 25.0% |
| ! | ACATTGTTACATTGTTTACA+GGG | + | chr3_4:74476366-74476385 | None:intergenic | 25.0% |
| ! | TAAAGGTCAAATCATAAAGA+AGG | - | chr3_4:74476806-74476825 | Msa0521570:intron | 25.0% |
| !! | TTCTTATTTAAAGTAGAGGA+GGG | + | chr3_4:74476851-74476870 | None:intergenic | 25.0% |
| !! | GAAGTTCTTATTTAAAGTAG+AGG | + | chr3_4:74476855-74476874 | None:intergenic | 25.0% |
| !! | TTGGGGTTAACAATTTATTT+TGG | - | chr3_4:74477110-74477129 | Msa0521570:CDS | 25.0% |
| ! | AAAAGGAAGAAGAAAAAGAA+TGG | - | chr3_4:74477201-74477220 | Msa0521570:CDS | 25.0% |
| ! | AAATCATTGACATTATCTTC+AGG | + | chr3_4:74477237-74477256 | None:intergenic | 25.0% |
| !! | AGATAATGTCAATGATTTTC+AGG | - | chr3_4:74477239-74477258 | Msa0521570:CDS | 25.0% |
| ! | AGTAAAACATAAAGTAACTC+AGG | + | chr3_4:74477446-74477465 | None:intergenic | 25.0% |
| TTTCTCAATAGAGTGTGATA+TGG | - | chr3_4:74474664-74474683 | Msa0521570:three_prime_UTR | 30.0% | |
| TGAAATTGTGAAAAGGGAAA+AGG | + | chr3_4:74474714-74474733 | None:intergenic | 30.0% | |
| GGAAGATGAAATTGTGAAAA+GGG | + | chr3_4:74474720-74474739 | None:intergenic | 30.0% | |
| AGGAAGATGAAATTGTGAAA+AGG | + | chr3_4:74474721-74474740 | None:intergenic | 30.0% | |
| ! | TTTGTTTAAGAGTGTGGTTA+AGG | + | chr3_4:74474774-74474793 | None:intergenic | 30.0% |
| !! | GTTATTATGGGTTCTAGATT+TGG | + | chr3_4:74474827-74474846 | None:intergenic | 30.0% |
| !!! | AAGAGTTTTTCGAGTGATAA+GGG | + | chr3_4:74474863-74474882 | None:intergenic | 30.0% |
| !! | TATGGGTATGTATGGTTTTA+AGG | - | chr3_4:74475294-74475313 | Msa0521570:intron | 30.0% |
| ACAAATTTGGGGATTAACAT+TGG | - | chr3_4:74475349-74475368 | Msa0521570:intron | 30.0% | |
| TCACATTGCCAAAAATTCTT+GGG | - | chr3_4:74475505-74475524 | Msa0521570:intron | 30.0% | |
| ! | TATTGGAACCGAATTTTGTA+GGG | - | chr3_4:74475616-74475635 | Msa0521570:intron | 30.0% |
| !! | GAGTGAAATTCTAGTTCATA+TGG | - | chr3_4:74475783-74475802 | Msa0521570:intron | 30.0% |
| !! | TCTGACATTTAATTTGTCTC+TGG | - | chr3_4:74475893-74475912 | Msa0521570:intron | 30.0% |
| GTAATCATACAAACTAGCAT+TGG | + | chr3_4:74475943-74475962 | None:intergenic | 30.0% | |
| TTGTAGTTATGCTGAAGAAA+AGG | + | chr3_4:74475984-74476003 | None:intergenic | 30.0% | |
| ! | GCCTTTATGTTCTTTTCATT+AGG | - | chr3_4:74476062-74476081 | Msa0521570:CDS | 30.0% |
| !! | TCAAGATCAATCTTTTTAGC+AGG | + | chr3_4:74476199-74476218 | None:intergenic | 30.0% |
| TTCTTCATTAGAAAATCTGG+TGG | - | chr3_4:74476263-74476282 | Msa0521570:intron | 30.0% | |
| CACATTGTTACATTGTTTAC+AGG | + | chr3_4:74476367-74476386 | None:intergenic | 30.0% | |
| GTCAACTTAAAATCAAGTGA+CGG | + | chr3_4:74476447-74476466 | None:intergenic | 30.0% | |
| CGTTTCTCTTCTATATAGAT+GGG | + | chr3_4:74476514-74476533 | None:intergenic | 30.0% | |
| TCGTTTCTCTTCTATATAGA+TGG | + | chr3_4:74476515-74476534 | None:intergenic | 30.0% | |
| TAGCACTTGATATACTCTAA+AGG | - | chr3_4:74476789-74476808 | Msa0521570:intron | 30.0% | |
| ! | TCTTATTTAAAGTAGAGGAG+GGG | + | chr3_4:74476850-74476869 | None:intergenic | 30.0% |
| ! | GTTCTTATTTAAAGTAGAGG+AGG | + | chr3_4:74476852-74476871 | None:intergenic | 30.0% |
| ! | ATGTAGCACATATACACTTT+TGG | - | chr3_4:74476909-74476928 | Msa0521570:CDS | 30.0% |
| !! | TTTTGGTTGAAGTTGTGTTT+GGG | - | chr3_4:74476926-74476945 | Msa0521570:CDS | 30.0% |
| TCTACTAAGTAGTTAGACAT+CGG | + | chr3_4:74477090-74477109 | None:intergenic | 30.0% | |
| TGTCTAACTACTTAGTAGAT+TGG | - | chr3_4:74477091-74477110 | Msa0521570:CDS | 30.0% | |
| GTCTAACTACTTAGTAGATT+GGG | - | chr3_4:74477092-74477111 | Msa0521570:CDS | 30.0% | |
| TCTAACTACTTAGTAGATTG+GGG | - | chr3_4:74477093-74477112 | Msa0521570:CDS | 30.0% | |
| !!! | TTTATTTTGGTAATTGACCC+TGG | - | chr3_4:74477123-74477142 | Msa0521570:CDS | 30.0% |
| TGGTGAAGATTAATGTCATT+GGG | + | chr3_4:74477173-74477192 | None:intergenic | 30.0% | |
| TTGGTGAAGATTAATGTCAT+TGG | + | chr3_4:74477174-74477193 | None:intergenic | 30.0% | |
| TTGTCCATCTTGAATACTTA+AGG | - | chr3_4:74477415-74477434 | Msa0521570:CDS | 30.0% | |
| TGTCCATCTTGAATACTTAA+GGG | - | chr3_4:74477416-74477435 | Msa0521570:CDS | 30.0% | |
| ATACCCTTAAGTATTCAAGA+TGG | + | chr3_4:74477422-74477441 | None:intergenic | 30.0% | |
| TTAGAATTTGAATCATTGGC+TGG | + | chr3_4:74477501-74477520 | None:intergenic | 30.0% | |
| AAAAGGGAAAAGGATAACCT+TGG | + | chr3_4:74474704-74474723 | None:intergenic | 35.0% | |
| ! | GAAGTTGTGAGAGATGATTT+TGG | + | chr3_4:74474800-74474819 | None:intergenic | 35.0% |
| !!! | TCGGTTTTAGGGGTTATTAT+GGG | + | chr3_4:74474839-74474858 | None:intergenic | 35.0% |
| !!! | TTCGGTTTTAGGGGTTATTA+TGG | + | chr3_4:74474840-74474859 | None:intergenic | 35.0% |
| !!! | TTTTTCGAGTGATAAGGGTT+CGG | + | chr3_4:74474858-74474877 | None:intergenic | 35.0% |
| !!! | GAAGAGTTTTTCGAGTGATA+AGG | + | chr3_4:74474864-74474883 | None:intergenic | 35.0% |
| GACAACGCAAGAATCTTAAA+CGG | - | chr3_4:74474911-74474930 | Msa0521570:CDS | 35.0% | |
| AAGTTAAAGCGAGTTTCTTG+CGG | + | chr3_4:74475105-74475124 | None:intergenic | 35.0% | |
| ! | GCTTTAACTTCAAAGAAACC+TGG | - | chr3_4:74475115-74475134 | Msa0521570:intron | 35.0% |
| ! | AGTTAATGATAGTTGGTACC+TGG | - | chr3_4:74475257-74475276 | Msa0521570:intron | 35.0% |
| GTGTCAAACATCATAACAGT+AGG | - | chr3_4:74475433-74475452 | Msa0521570:intron | 35.0% | |
| CTCACATTGCCAAAAATTCT+TGG | - | chr3_4:74475504-74475523 | Msa0521570:intron | 35.0% | |
| AAACCCGTTTAGCATAGTAT+TGG | - | chr3_4:74475599-74475618 | Msa0521570:intron | 35.0% | |
| GTTCCAATACTATGCTAAAC+GGG | + | chr3_4:74475605-74475624 | None:intergenic | 35.0% | |
| GGTTCCAATACTATGCTAAA+CGG | + | chr3_4:74475606-74475625 | None:intergenic | 35.0% | |
| ! | GTATTGGAACCGAATTTTGT+AGG | - | chr3_4:74475615-74475634 | Msa0521570:intron | 35.0% |
| CTCATATTGTTAAGGTTCCT+TGG | - | chr3_4:74475707-74475726 | Msa0521570:intron | 35.0% | |
| AGCTTTCTACAAAACTGAAC+AGG | + | chr3_4:74476021-74476040 | None:intergenic | 35.0% | |
| CCAAAGACTATTTCCTTAAC+CGG | - | chr3_4:74476131-74476150 | Msa0521570:intron | 35.0% | |
| !! | AATCTTTTTAGCAGGAATGC+TGG | + | chr3_4:74476191-74476210 | None:intergenic | 35.0% |
| CAGGGCATGTAAAGATAAAA+TGG | + | chr3_4:74476348-74476367 | None:intergenic | 35.0% | |
| !!! | TTTTAAGTTGACGACATCTG+TGG | - | chr3_4:74476455-74476474 | Msa0521570:intron | 35.0% |
| !! | CTTCTATATAGATGGGTTGT+AGG | + | chr3_4:74476507-74476526 | None:intergenic | 35.0% |
| ATACTGTCATAGCACATGTT+AGG | - | chr3_4:74476536-74476555 | Msa0521570:intron | 35.0% | |
| !! | CTTTTGGTTGAAGTTGTGTT+TGG | - | chr3_4:74476925-74476944 | Msa0521570:CDS | 35.0% |
| ATAGACACTGGTAGTAATTG+AGG | + | chr3_4:74477016-74477035 | None:intergenic | 35.0% | |
| ! | AACAATTGACTCATAGACAC+TGG | + | chr3_4:74477028-74477047 | None:intergenic | 35.0% |
| TAATGTCATTGGGATCTGAA+AGG | + | chr3_4:74477163-74477182 | None:intergenic | 35.0% | |
| TCTTCACCAAATGTGACAAA+AGG | - | chr3_4:74477184-74477203 | Msa0521570:CDS | 35.0% | |
| ! | CTTCTTCCTTTTGTCACATT+TGG | + | chr3_4:74477193-74477212 | None:intergenic | 35.0% |
| AGGAAGAAGAAAAAGAATGG+AGG | - | chr3_4:74477204-74477223 | Msa0521570:CDS | 35.0% | |
| ACATTACTAGTCATGATCCA+TGG | + | chr3_4:74477297-74477316 | None:intergenic | 35.0% | |
| TATGGAGTAGTATCTCATCA+CGG | + | chr3_4:74477332-74477351 | None:intergenic | 35.0% | |
| TGATGAGATACTACTCCATA+TGG | - | chr3_4:74477332-74477351 | Msa0521570:CDS | 35.0% | |
| GTGTTGTGGAAATATCTCAG+CGG | + | chr3_4:74474632-74474651 | None:intergenic | 40.0% | |
| ACACTCTATTGAGAAACACG+CGG | + | chr3_4:74474660-74474679 | None:intergenic | 40.0% | |
| AGGATAACCTTGGTAGATGA+AGG | + | chr3_4:74474694-74474713 | None:intergenic | 40.0% | |
| ATAGAGTCTGCGAGAAAATG+AGG | + | chr3_4:74474741-74474760 | None:intergenic | 40.0% | |
| !! | TGGTGGTTTGTTTAAGAGTG+TGG | + | chr3_4:74474780-74474799 | None:intergenic | 40.0% |
| ! | GTTGTGAGAGATGATTTTGG+TGG | + | chr3_4:74474797-74474816 | None:intergenic | 40.0% |
| !! | TGATAAGGGTTCGGTTTTAG+GGG | + | chr3_4:74474849-74474868 | None:intergenic | 40.0% |
| !! | GTGATAAGGGTTCGGTTTTA+GGG | + | chr3_4:74474850-74474869 | None:intergenic | 40.0% |
| !! | AGTGATAAGGGTTCGGTTTT+AGG | + | chr3_4:74474851-74474870 | None:intergenic | 40.0% |
| TTGTTGGTCGTTCCAATGTT+GGG | - | chr3_4:74475050-74475069 | Msa0521570:intron | 40.0% | |
| AAGCGATGATTTCCCAACAT+TGG | + | chr3_4:74475065-74475084 | None:intergenic | 40.0% | |
| !! | TGGTTGATTTGCCTGGATAT+GGG | - | chr3_4:74475277-74475296 | Msa0521570:intron | 40.0% |
| AACCATACATACCCATATCC+AGG | + | chr3_4:74475291-74475310 | None:intergenic | 40.0% | |
| ! | TCCATTGGCCCAAGAATTTT+TGG | + | chr3_4:74475516-74475535 | None:intergenic | 40.0% |
| TCGATCTCACTCTCAAAAGT+TGG | + | chr3_4:74475580-74475599 | None:intergenic | 40.0% | |
| ATGTATACATTGCACAGCCA+AGG | + | chr3_4:74475727-74475746 | None:intergenic | 40.0% | |
| CAATCCATTCTAAGTTCCTG+CGG | + | chr3_4:74476100-74476119 | None:intergenic | 40.0% | |
| ! | GCAGGAACTTAGAATGGATT+GGG | - | chr3_4:74476099-74476118 | Msa0521570:intron | 40.0% |
| CCGGTTAAGGAAATAGTCTT+TGG | + | chr3_4:74476134-74476153 | None:intergenic | 40.0% | |
| TTTCCTTAACCGGTCAACAT+TGG | - | chr3_4:74476141-74476160 | Msa0521570:intron | 40.0% | |
| AAACCAATGTTGACCGGTTA+AGG | + | chr3_4:74476147-74476166 | None:intergenic | 40.0% | |
| !! | TAACCGGTCAACATTGGTTT+CGG | - | chr3_4:74476147-74476166 | Msa0521570:intron | 40.0% |
| TTGATCTTGAGTATGCTGCT+TGG | - | chr3_4:74476209-74476228 | Msa0521570:intron | 40.0% | |
| AAGAATCGATAAGAGCTGAG+CGG | - | chr3_4:74476306-74476325 | Msa0521570:intron | 40.0% | |
| CAATGTGTATGTACCGAGAA+TGG | - | chr3_4:74476380-74476399 | Msa0521570:intron | 40.0% | |
| ATTATGAACCAAGGTAAGCG+TGG | - | chr3_4:74476628-74476647 | Msa0521570:intron | 40.0% | |
| CGTGGCTTCTATTTAGATAG+AGG | + | chr3_4:74476690-74476709 | None:intergenic | 40.0% | |
| AAGAGTAGTTCATCTACACC+AGG | - | chr3_4:74476747-74476766 | Msa0521570:intron | 40.0% | |
| TAAAGAAGGAAAGCCTCTAG+CGG | - | chr3_4:74476820-74476839 | Msa0521570:intron | 40.0% | |
| CATGGAAAGTGGATCACTTA+AGG | + | chr3_4:74476877-74476896 | None:intergenic | 40.0% | |
| ATGTGCTACATATACTGCCT+AGG | + | chr3_4:74476900-74476919 | None:intergenic | 40.0% | |
| TGCGAGACAATGATATGTGT+CGG | + | chr3_4:74476955-74476974 | None:intergenic | 40.0% | |
| TTAGACATCGGACATAGTAG+TGG | + | chr3_4:74477078-74477097 | None:intergenic | 40.0% | |
| !!! | GATTTTCAGGAGTTGATACG+TGG | - | chr3_4:74477252-74477271 | Msa0521570:CDS | 40.0% |
| TTACTAGTCATGATCCATGG+AGG | + | chr3_4:74477294-74477313 | None:intergenic | 40.0% | |
| ACTAGTAATGTCACCCATCA+AGG | - | chr3_4:74477306-74477325 | Msa0521570:CDS | 40.0% | |
| AGTTTGCGGCATTATGTTGT+CGG | - | chr3_4:74477385-74477404 | Msa0521570:CDS | 40.0% | |
| ! | ATACGGTCGGTTTCTCAAGT+GGG | + | chr3_4:74474591-74474610 | None:intergenic | 45.0% |
| !! | GAGTGTTTTTGCTCGCGATA+CGG | + | chr3_4:74474608-74474627 | None:intergenic | 45.0% |
| TGGTTGTCCTTCATCTACCA+AGG | - | chr3_4:74474684-74474703 | Msa0521570:three_prime_UTR | 45.0% | |
| TGAGTGACATGAGTGTTTGG+AGG | + | chr3_4:74474890-74474909 | None:intergenic | 45.0% | |
| TCGTGAGTGACATGAGTGTT+TGG | + | chr3_4:74474893-74474912 | None:intergenic | 45.0% | |
| ACCATCGGAAGGACAATCTT+CGG | + | chr3_4:74475014-74475033 | None:intergenic | 45.0% | |
| CTTGTTGGTCGTTCCAATGT+TGG | - | chr3_4:74475049-74475068 | Msa0521570:intron | 45.0% | |
| CATATCCAGGCAAATCAACC+AGG | + | chr3_4:74475278-74475297 | None:intergenic | 45.0% | |
| !! | CTGGTTGATTTGCCTGGATA+TGG | - | chr3_4:74475276-74475295 | Msa0521570:intron | 45.0% |
| TGCCTGGATATGGGTATGTA+TGG | - | chr3_4:74475286-74475305 | Msa0521570:intron | 45.0% | |
| GCCAAAAATTCTTGGGCCAA+TGG | - | chr3_4:74475512-74475531 | Msa0521570:intron | 45.0% | |
| CGCAGGAACTTAGAATGGAT+TGG | - | chr3_4:74476098-74476117 | Msa0521570:intron | 45.0% | |
| AGACCGAAACCAATGTTGAC+CGG | + | chr3_4:74476153-74476172 | None:intergenic | 45.0% | |
| ! | TCTTGAGTATGCTGCTTGGT+TGG | - | chr3_4:74476213-74476232 | Msa0521570:intron | 45.0% |
| ! | CTTGAGTATGCTGCTTGGTT+GGG | - | chr3_4:74476214-74476233 | Msa0521570:intron | 45.0% |
| TGCTTGGTTGGGTGAGAATA+AGG | - | chr3_4:74476225-74476244 | Msa0521570:intron | 45.0% | |
| TGGTTATGTTGCGACTTGTG+TGG | - | chr3_4:74476283-74476302 | Msa0521570:intron | 45.0% | |
| AGTTGACGACATCTGTGGAT+CGG | - | chr3_4:74476460-74476479 | Msa0521570:intron | 45.0% | |
| CACAGGTTTGATGTTAGACG+TGG | + | chr3_4:74476708-74476727 | None:intergenic | 45.0% | |
| CAATACAGCATGAGTGACAC+AGG | + | chr3_4:74476725-74476744 | None:intergenic | 45.0% | |
| GTAGTTCATCTACACCAGGT+TGG | - | chr3_4:74476751-74476770 | Msa0521570:intron | 45.0% | |
| CTACATATACTGCCTAGGCA+TGG | + | chr3_4:74476895-74476914 | None:intergenic | 45.0% | |
| TATCTCATCACGGCCTTGAT+GGG | + | chr3_4:74477322-74477341 | None:intergenic | 45.0% | |
| !!! | AATAATTTTTAATATAGTTA+TGG | - | chr3_4:74476411-74476430 | Msa0521570:intron | 5.0% |
| ! | GATACGGTCGGTTTCTCAAG+TGG | + | chr3_4:74474592-74474611 | None:intergenic | 50.0% |
| ! | GTTTTTGCTCGCGATACGGT+CGG | + | chr3_4:74474604-74474623 | None:intergenic | 50.0% |
| TATTGAGAAACACGCGGACG+CGG | + | chr3_4:74474654-74474673 | None:intergenic | 50.0% | |
| ACCGAAGATTGTCCTTCCGA+TGG | - | chr3_4:74475010-74475029 | Msa0521570:intron | 50.0% | |
| AACTCAGGAAGACCATCGGA+AGG | + | chr3_4:74475025-74475044 | None:intergenic | 50.0% | |
| AGCGAACTCAGGAAGACCAT+CGG | + | chr3_4:74475029-74475048 | None:intergenic | 50.0% | |
| CTTCCTGAGTTCGCTCTTGT+TGG | - | chr3_4:74475034-74475053 | Msa0521570:intron | 50.0% | |
| !! | TGGTACCTGGTTGATTTGCC+TGG | - | chr3_4:74475270-74475289 | Msa0521570:intron | 50.0% |
| GGCTTCTAGATGAGCAAAGC+CGG | + | chr3_4:74476486-74476505 | None:intergenic | 50.0% | |
| TTCAAGGTCCACGCTTACCT+TGG | + | chr3_4:74476639-74476658 | None:intergenic | 50.0% | |
| TGCAGCTTGATTGTCCAACC+TGG | + | chr3_4:74476768-74476787 | None:intergenic | 50.0% | |
| GTGATCCACTTTCCATGCCT+AGG | - | chr3_4:74476880-74476899 | Msa0521570:intron | 50.0% | |
| TACTGCCTAGGCATGGAAAG+TGG | + | chr3_4:74476888-74476907 | None:intergenic | 50.0% | |
| AGTCATGATCCATGGAGGCA+CGG | + | chr3_4:74477289-74477308 | None:intergenic | 50.0% | |
| GTATCTCATCACGGCCTTGA+TGG | + | chr3_4:74477323-74477342 | None:intergenic | 50.0% | |
| AGTGCTTGAGCCAGTAGTTC+CGG | + | chr3_4:74477365-74477384 | None:intergenic | 50.0% | |
| ! | CTGGCTCAAGCACTAGTTTG+CGG | - | chr3_4:74477371-74477390 | Msa0521570:CDS | 50.0% |
| CGGCATTATGTTGTCGGAGT+TGG | - | chr3_4:74477391-74477410 | Msa0521570:CDS | 50.0% | |
| CGACCAACAAGAGCGAACTC+AGG | + | chr3_4:74475040-74475059 | None:intergenic | 55.0% | |
| TCAATACCCATGCTCGCGTG+TGG | + | chr3_4:74475673-74475692 | None:intergenic | 55.0% | |
| TGCGCCGCAGGAACTTAGAA+TGG | - | chr3_4:74476093-74476112 | Msa0521570:intron | 55.0% | |
| CATTCGAAACCGTGCCTCCA+TGG | - | chr3_4:74477277-74477296 | Msa0521570:CDS | 55.0% | |
| TACTCCATATGGCCCAGCTC+CGG | - | chr3_4:74477343-74477362 | Msa0521570:CDS | 55.0% | |
| CTCGCGTGTGGTGTGGGTTT+AGG | + | chr3_4:74475661-74475680 | None:intergenic | 60.0% | |
| TAGGTATGCATCTGCGCCGC+AGG | - | chr3_4:74476081-74476100 | Msa0521570:CDS | 60.0% | |
| GACGACATCTGTGGATCGGC+CGG | - | chr3_4:74476464-74476483 | Msa0521570:intron | 60.0% | |
| GAGGAGGGGTAAACCGCTAG+AGG | + | chr3_4:74476836-74476855 | None:intergenic | 60.0% | |
| AGTTCCGGAGCTGGGCCATA+TGG | + | chr3_4:74477350-74477369 | None:intergenic | 60.0% | |
| GAGCCAGTAGTTCCGGAGCT+GGG | + | chr3_4:74477358-74477377 | None:intergenic | 60.0% | |
| TGAGCCAGTAGTTCCGGAGC+TGG | + | chr3_4:74477359-74477378 | None:intergenic | 60.0% | |
| ! | AACACGCGGACGCGGTGTTG+TGG | + | chr3_4:74474646-74474665 | None:intergenic | 65.0% |
| ACCCACACCACACGCGAGCA+TGG | - | chr3_4:74475663-74475682 | Msa0521570:intron | 65.0% | |
| CCCATGCTCGCGTGTGGTGT+GGG | + | chr3_4:74475667-74475686 | None:intergenic | 65.0% | |
| CCCACACCACACGCGAGCAT+GGG | - | chr3_4:74475664-74475683 | Msa0521570:intron | 65.0% | |
| ACCCATGCTCGCGTGTGGTG+TGG | + | chr3_4:74475668-74475687 | None:intergenic | 65.0% | |
| TGGCCCAGCTCCGGAACTAC+TGG | - | chr3_4:74477352-74477371 | Msa0521570:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 74474579 | 74477613 | 74474579 | ID=Msa0521570;Name=Msa0521570 |
| chr3_4 | mRNA | 74474579 | 74477613 | 74474579 | ID=Msa0521570-mRNA-1;Parent=Msa0521570;Name=Msa0521570-mRNA-1;_AED=0.02;_eAED=0.02;_QI=104|1|1|1|1|1|4|227|301 |
| chr3_4 | exon | 74474579 | 74475024 | 74474579 | ID=Msa0521570-mRNA-1:exon:21043;Parent=Msa0521570-mRNA-1 |
| chr3_4 | exon | 74475946 | 74476108 | 74475946 | ID=Msa0521570-mRNA-1:exon:21042;Parent=Msa0521570-mRNA-1 |
| chr3_4 | exon | 74476894 | 74476963 | 74476894 | ID=Msa0521570-mRNA-1:exon:21041;Parent=Msa0521570-mRNA-1 |
| chr3_4 | exon | 74477056 | 74477613 | 74477056 | ID=Msa0521570-mRNA-1:exon:21040;Parent=Msa0521570-mRNA-1 |
| chr3_4 | five_prime_UTR | 74477510 | 74477613 | 74477510 | ID=Msa0521570-mRNA-1:five_prime_utr;Parent=Msa0521570-mRNA-1 |
| chr3_4 | CDS | 74477056 | 74477509 | 74477056 | ID=Msa0521570-mRNA-1:cds;Parent=Msa0521570-mRNA-1 |
| chr3_4 | CDS | 74476894 | 74476963 | 74476894 | ID=Msa0521570-mRNA-1:cds;Parent=Msa0521570-mRNA-1 |
| chr3_4 | CDS | 74475946 | 74476108 | 74475946 | ID=Msa0521570-mRNA-1:cds;Parent=Msa0521570-mRNA-1 |
| chr3_4 | CDS | 74474806 | 74475024 | 74474806 | ID=Msa0521570-mRNA-1:cds;Parent=Msa0521570-mRNA-1 |
| chr3_4 | three_prime_UTR | 74474579 | 74474805 | 74474579 | ID=Msa0521570-mRNA-1:three_prime_utr;Parent=Msa0521570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
