Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388200 | XP_003603604.1 | 98.339 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 0.0 | 611 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388200 | sp|O81004|Y2287_ARATH | 59.829 | 234 | 91 | 2 | 66 | 298 | 67 | 298 | 1.67e-101 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388200 | G7J3E8 | 98.339 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 0.0 | 611 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012380 | Msa0388200 | 0.803161 | 3.977370e-49 | -8.615850e-47 |
| Msa0046050 | Msa0388200 | 0.809074 | 2.264766e-50 | -8.615850e-47 |
| Msa0080810 | Msa0388200 | 0.806630 | 7.494823e-50 | -8.615850e-47 |
| Msa0096020 | Msa0388200 | 0.806740 | 7.102742e-50 | -8.615850e-47 |
| Msa0140290 | Msa0388200 | 0.810098 | 1.364798e-50 | -8.615850e-47 |
| Msa0187980 | Msa0388200 | 0.800372 | 1.486445e-48 | -8.615850e-47 |
| Msa0233200 | Msa0388200 | 0.811890 | 5.582730e-51 | -8.615850e-47 |
| Msa0373220 | Msa0388200 | 0.808155 | 3.558994e-50 | -8.615850e-47 |
| Msa0378390 | Msa0388200 | -0.800831 | 1.198482e-48 | -8.615850e-47 |
| Msa0380520 | Msa0388200 | 0.809324 | 2.001747e-50 | -8.615850e-47 |
| Msa0388200 | Msa0392050 | 0.802569 | 5.271042e-49 | -8.615850e-47 |
| Msa0388200 | Msa0404070 | 0.804762 | 1.849236e-49 | -8.615850e-47 |
| Msa0388200 | Msa0415200 | 0.803022 | 4.250089e-49 | -8.615850e-47 |
| Msa0388200 | Msa0427740 | -0.814879 | 1.230566e-51 | -8.615850e-47 |
| Msa0388200 | Msa0427970 | -0.817884 | 2.616137e-52 | -8.615850e-47 |
| Msa0388200 | Msa0430020 | 0.810865 | 9.321462e-51 | -8.615850e-47 |
| Msa0388200 | Msa0433670 | 0.971545 | 2.477095e-133 | -8.615850e-47 |
| Msa0388200 | Msa0437550 | 0.803807 | 2.922821e-49 | -8.615850e-47 |
| Msa0388200 | Msa0437790 | 0.818259 | 2.151547e-52 | -8.615850e-47 |
| Msa0388200 | Msa0468020 | 0.801178 | 1.017609e-48 | -8.615850e-47 |
| Msa0388200 | Msa0469950 | 0.805336 | 1.402116e-49 | -8.615850e-47 |
| Msa0388200 | Msa0477550 | 0.971391 | 4.325484e-133 | -8.615850e-47 |
| Msa0388200 | Msa0480430 | 0.808273 | 3.358664e-50 | -8.615850e-47 |
| Msa0388200 | Msa0485210 | 0.800077 | 1.706592e-48 | -8.615850e-47 |
| Msa0388200 | Msa0518570 | -0.816602 | 5.082441e-52 | -8.615850e-47 |
| Msa0388200 | Msa0519060 | 0.802813 | 4.694526e-49 | -8.615850e-47 |
| Msa0388200 | Msa0521570 | 0.999621 | 0.000000e+00 | -8.615850e-47 |
| Msa0388200 | Msa0524960 | 0.819160 | 1.344003e-52 | -8.615850e-47 |
| Msa0388200 | Msa0577050 | 0.828052 | 1.113629e-54 | -8.615850e-47 |
| Msa0388200 | Msa0579360 | 0.801144 | 1.034061e-48 | -8.615850e-47 |
| Msa0388200 | Msa0580540 | 0.807457 | 5.008032e-50 | -8.615850e-47 |
| Msa0388200 | Msa0605250 | 0.800225 | 1.592632e-48 | -8.615850e-47 |
| Msa0388200 | Msa0610360 | 0.805035 | 1.620889e-49 | -8.615850e-47 |
| Msa0388200 | Msa0610780 | 0.800326 | 1.519133e-48 | -8.615850e-47 |
| Msa0388200 | Msa0610810 | 0.822425 | 2.385943e-53 | -8.615850e-47 |
| Msa0388200 | Msa0614980 | 0.844113 | 9.241810e-59 | -8.615850e-47 |
| Msa0388200 | Msa0619390 | 0.811066 | 8.428881e-51 | -8.615850e-47 |
| Msa0388200 | Msa0621780 | 0.805503 | 1.293607e-49 | -8.615850e-47 |
| Msa0388200 | Msa0622250 | 0.823803 | 1.137618e-53 | -8.615850e-47 |
| Msa0388200 | Msa0650890 | 0.805963 | 1.035678e-49 | -8.615850e-47 |
| Msa0388200 | Msa0651310 | 0.819665 | 1.030891e-52 | -8.615850e-47 |
| Msa0388200 | Msa0679780 | 0.809464 | 1.867938e-50 | -8.615850e-47 |
| Msa0388200 | Msa0693500 | 0.820688 | 6.008282e-53 | -8.615850e-47 |
| Msa0388200 | Msa0705810 | 0.831278 | 1.828022e-55 | -8.615850e-47 |
| Msa0388200 | Msa0713210 | 0.805472 | 1.313314e-49 | -8.615850e-47 |
| Msa0388200 | Msa0713220 | 0.822938 | 1.811757e-53 | -8.615850e-47 |
| Msa0388200 | Msa0747900 | 0.804336 | 2.268722e-49 | -8.615850e-47 |
| Msa0388200 | Msa0748330 | 0.818954 | 1.496575e-52 | -8.615850e-47 |
| Msa0388200 | Msa0748980 | 0.833310 | 5.740885e-56 | -8.615850e-47 |
| Msa0388200 | Msa0790640 | 0.834054 | 3.740141e-56 | -8.615850e-47 |
| Msa0388200 | Msa0793100 | 0.827364 | 1.630116e-54 | -8.615850e-47 |
| Msa0388200 | Msa0795710 | 0.805991 | 1.021915e-49 | -8.615850e-47 |
| Msa0388200 | Msa0825520 | 0.834817 | 2.406526e-56 | -8.615850e-47 |
| Msa0388200 | Msa0864730 | 0.840339 | 9.231128e-58 | -8.615850e-47 |
| Msa0388200 | Msa0864750 | 0.838769 | 2.361401e-57 | -8.615850e-47 |
| Msa0388200 | Msa0888900 | 0.813909 | 2.015907e-51 | -8.615850e-47 |
| Msa0388200 | Msa0899130 | 0.828362 | 9.375425e-55 | -8.615850e-47 |
| Msa0388200 | Msa0904630 | 0.806692 | 7.270059e-50 | -8.615850e-47 |
| Msa0388200 | Msa0968960 | 0.802626 | 5.132140e-49 | -8.615850e-47 |
| Msa0388200 | Msa0973890 | 0.842516 | 2.466214e-58 | -8.615850e-47 |
| Msa0388200 | Msa1036020 | -0.815726 | 7.974064e-52 | -8.615850e-47 |
| Msa0388200 | Msa1067910 | 0.821258 | 4.443033e-53 | -8.615850e-47 |
| Msa0388200 | Msa1077940 | -0.806484 | 8.043862e-50 | -8.615850e-47 |
| Msa0388200 | Msa1078600 | 0.802192 | 6.303469e-49 | -8.615850e-47 |
| Msa0388200 | Msa1134560 | 0.800939 | 1.139167e-48 | -8.615850e-47 |
| Msa0388200 | Msa1144730 | 0.802964 | 4.368865e-49 | -8.615850e-47 |
| Msa0388200 | Msa1158090 | 0.818493 | 1.904740e-52 | -8.615850e-47 |
| Msa0388200 | Msa1202220 | 0.803095 | 4.104763e-49 | -8.615850e-47 |
| Msa0388200 | Msa1219780 | -0.850695 | 1.437748e-60 | -8.615850e-47 |
| Msa0388200 | Msa1220680 | 0.809640 | 1.712073e-50 | -8.615850e-47 |
| Msa0388200 | Msa1222030 | -0.809660 | 1.695829e-50 | -8.615850e-47 |
| Msa0388200 | Msa1224820 | 0.806334 | 8.650651e-50 | -8.615850e-47 |
| Msa0388200 | Msa1228350 | 0.811412 | 7.090911e-51 | -8.615850e-47 |
| Msa0388200 | Msa1237750 | 0.807061 | 6.076291e-50 | -8.615850e-47 |
| Msa0388200 | Msa1255020 | 0.811390 | 7.170634e-51 | -8.615850e-47 |
| Msa0388200 | Msa1258100 | 0.814303 | 1.650076e-51 | -8.615850e-47 |
| Msa0388200 | Msa1263590 | 0.826639 | 2.428962e-54 | -8.615850e-47 |
| Msa0388200 | Msa1263670 | 0.823381 | 1.428209e-53 | -8.615850e-47 |
| Msa0388200 | Msa1266710 | -0.842897 | 1.953423e-58 | -8.615850e-47 |
| Msa0388200 | Msa1272950 | 0.803858 | 2.851737e-49 | -8.615850e-47 |
| Msa0388200 | Msa1288970 | 0.800765 | 1.235948e-48 | -8.615850e-47 |
| Msa0388200 | Msa1295470 | 0.809331 | 1.995006e-50 | -8.615850e-47 |
| Msa0388200 | Msa1349810 | 0.835159 | 1.973099e-56 | -8.615850e-47 |
| Msa0388200 | Msa1358340 | 0.806516 | 7.920329e-50 | -8.615850e-47 |
| Msa0388200 | Msa1363690 | -0.852325 | 4.971733e-61 | -8.615850e-47 |
| Msa0388200 | Msa1364850 | 0.801026 | 1.093411e-48 | -8.615850e-47 |
| Msa0388200 | Msa1368980 | 0.812532 | 4.042917e-51 | -8.615850e-47 |
| Msa0388200 | Msa1369180 | 0.828380 | 9.283991e-55 | -8.615850e-47 |
| Msa0388200 | Msa1373390 | 0.824613 | 7.339266e-54 | -8.615850e-47 |
| Msa0388200 | Msa1384620 | 0.832298 | 1.023695e-55 | -8.615850e-47 |
| Msa0388200 | Msa1387520 | 0.999466 | 5.360183e-314 | -8.615850e-47 |
| Msa0388200 | Msa1388610 | 0.806273 | 8.913334e-50 | -8.615850e-47 |
| Msa0388200 | Msa1395580 | 0.824857 | 6.429158e-54 | -8.615850e-47 |
| Msa0388200 | Msa1396550 | -0.849341 | 3.440684e-60 | -8.615850e-47 |
| Msa0388200 | Msa1403950 | 0.800318 | 1.524581e-48 | -8.615850e-47 |
| Msa0388200 | Msa1405380 | 0.805326 | 1.408752e-49 | -8.615850e-47 |
| Msa0388200 | Msa1407210 | -0.849025 | 4.213003e-60 | -8.615850e-47 |
| Msa0388200 | Msa1409060 | -0.805971 | 1.031841e-49 | -8.615850e-47 |
| Msa0388200 | Msa1420600 | 0.801491 | 8.782858e-49 | -8.615850e-47 |
| Msa0388200 | Msa1423660 | -0.819184 | 1.327251e-52 | -8.615850e-47 |
| Msa0388200 | Msa1425540 | 0.803394 | 3.560391e-49 | -8.615850e-47 |
| Msa0388200 | Msa1427600 | 0.820757 | 5.795523e-53 | -8.615850e-47 |
| Msa0388200 | Msa1430630 | 0.800812 | 1.209077e-48 | -8.615850e-47 |
| Msa0388200 | Msa1434660 | 0.803479 | 3.417820e-49 | -8.615850e-47 |
| Msa0388200 | Msa1435690 | 0.802868 | 4.574174e-49 | -8.615850e-47 |
| Msa0388200 | Msa1439070 | 0.801158 | 1.027524e-48 | -8.615850e-47 |
| Msa0388200 | Msa1453540 | 0.809100 | 2.235393e-50 | -8.615850e-47 |
| Msa0388200 | Msa1462600 | 0.813937 | 1.987788e-51 | -8.615850e-47 |
| Msa0253160 | Msa0388200 | 0.812399 | 4.323832e-51 | -8.615850e-47 |
| Msa0291940 | Msa0388200 | 0.814332 | 1.625933e-51 | -8.615850e-47 |
| Msa0303440 | Msa0388200 | 0.808478 | 3.036557e-50 | -8.615850e-47 |
| Msa0303500 | Msa0388200 | 0.800682 | 1.285172e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388200 | MtrunA17_Chr3g0139461 | 98.339 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 0.0 | 611 |
| Msa0388200 | MtrunA17_Chr4g0047261 | 61.966 | 234 | 86 | 2 | 66 | 298 | 64 | 295 | 1.09e-103 | 305 |
| Msa0388200 | MtrunA17_Chr3g0107041 | 40.000 | 155 | 88 | 1 | 86 | 240 | 461 | 610 | 7.78e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388200 | AT5G11480.1 | 66.458 | 319 | 88 | 4 | 1 | 301 | 1 | 318 | 1.62e-136 | 389 |
| Msa0388200 | AT2G22870.1 | 59.829 | 234 | 91 | 2 | 66 | 298 | 67 | 298 | 1.69e-102 | 302 |
| Msa0388200 | AT5G58370.1 | 40.580 | 138 | 81 | 1 | 103 | 240 | 274 | 410 | 5.51e-23 | 98.6 |
| Msa0388200 | AT5G58370.3 | 40.580 | 138 | 81 | 1 | 103 | 240 | 274 | 410 | 6.13e-23 | 98.6 |
| Msa0388200 | AT5G58370.2 | 40.580 | 138 | 81 | 1 | 103 | 240 | 274 | 410 | 6.13e-23 | 98.6 |
Find 82 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATTATGGGTTCTAGATT+TGG | 0.286082 | 3_1:+92561364 | None:intergenic |
| CTGGTTGATTTGCCTGGATA+TGG | 0.290721 | 3_1:-92560910 | Msa0388200:CDS |
| TTGTCCATCTTGAATACTTA+AGG | 0.298374 | 3_1:-92558772 | Msa0388200:three_prime_UTR |
| CCGGTTAAGGAAATAGTCTT+TGG | 0.322070 | 3_1:+92560056 | None:intergenic |
| CTTCCTGAGTTCGCTCTTGT+TGG | 0.347167 | 3_1:-92561154 | Msa0388200:CDS |
| CCAAAGACTATTTCCTTAAC+CGG | 0.351830 | 3_1:-92560056 | Msa0388200:CDS |
| GAATTTAGAATTTGAATCAT+TGG | 0.361774 | 3_1:+92558685 | None:intergenic |
| TAACCGGTCAACATTGGTTT+CGG | 0.367527 | 3_1:-92560040 | Msa0388200:CDS |
| AAACCAATGTTGACCGGTTA+AGG | 0.367559 | 3_1:+92560043 | None:intergenic |
| TTGGTGAAGATTAATGTCAT+TGG | 0.374167 | 3_1:+92559016 | None:intergenic |
| CGGCATTATGTTGTCGGAGT+TGG | 0.377561 | 3_1:-92558796 | Msa0388200:three_prime_UTR |
| TGAGCCAGTAGTTCCGGAGC+TGG | 0.377582 | 3_1:+92558831 | None:intergenic |
| CTTGTTGGTCGTTCCAATGT+TGG | 0.388640 | 3_1:-92561139 | Msa0388200:CDS |
| GGAAGATGAAATTGTGAAAA+GGG | 0.394291 | 3_1:+92561471 | None:intergenic |
| AGTGCTTGAGCCAGTAGTTC+CGG | 0.398592 | 3_1:+92558825 | None:intergenic |
| CTTGAGTATGCTGCTTGGTT+GGG | 0.404038 | 3_1:-92559973 | Msa0388200:CDS |
| TGCTTGGTTGGGTGAGAATA+AGG | 0.405086 | 3_1:-92559962 | Msa0388200:intron |
| GAAGTTGTGAGAGATGATTT+TGG | 0.405539 | 3_1:+92561391 | None:intergenic |
| TTTGTTTAAGAGTGTGGTTA+AGG | 0.415649 | 3_1:+92561417 | None:intergenic |
| TGGTGAAGATTAATGTCATT+GGG | 0.416483 | 3_1:+92559017 | None:intergenic |
| AGGAAGATGAAATTGTGAAA+AGG | 0.418757 | 3_1:+92561470 | None:intergenic |
| TTGTTGGTCGTTCCAATGTT+GGG | 0.429746 | 3_1:-92561138 | Msa0388200:CDS |
| TCTTGAGTATGCTGCTTGGT+TGG | 0.431152 | 3_1:-92559974 | Msa0388200:CDS |
| TGTCCATCTTGAATACTTAA+GGG | 0.437140 | 3_1:-92558771 | Msa0388200:three_prime_UTR |
| TGGTACCTGGTTGATTTGCC+TGG | 0.439670 | 3_1:-92560916 | Msa0388200:CDS |
| AGTTCCGGAGCTGGGCCATA+TGG | 0.447478 | 3_1:+92558840 | None:intergenic |
| TAGTATAATTTGAGCATCAT+TGG | 0.450984 | 3_1:+92561228 | None:intergenic |
| TTTCTCAATAGAGTGTGATA+TGG | 0.453137 | 3_1:-92561524 | Msa0388200:exon |
| CGCAGGAACTTAGAATGGAT+TGG | 0.455183 | 3_1:-92560089 | Msa0388200:CDS |
| GTATCTCATCACGGCCTTGA+TGG | 0.455440 | 3_1:+92558867 | None:intergenic |
| TGGCCCAGCTCCGGAACTAC+TGG | 0.455693 | 3_1:-92558835 | Msa0388200:CDS |
| TGAAATTGTGAAAAGGGAAA+AGG | 0.458557 | 3_1:+92561477 | None:intergenic |
| AGTTTGCGGCATTATGTTGT+CGG | 0.461219 | 3_1:-92558802 | Msa0388200:three_prime_UTR |
| AAATCATTGACATTATCTTC+AGG | 0.464209 | 3_1:+92558953 | None:intergenic |
| TTAGAATTTGAATCATTGGC+TGG | 0.467238 | 3_1:+92558689 | None:intergenic |
| GCAGGAACTTAGAATGGATT+GGG | 0.476083 | 3_1:-92560088 | Msa0388200:CDS |
| TGGTGGTTTGTTTAAGAGTG+TGG | 0.483129 | 3_1:+92561411 | None:intergenic |
| CATTCGAAACCGTGCCTCCA+TGG | 0.490848 | 3_1:-92558910 | Msa0388200:CDS |
| TAGGTATGCATCTGCGCCGC+AGG | 0.492153 | 3_1:-92560106 | Msa0388200:CDS |
| TCGTGAGTGACATGAGTGTT+TGG | 0.492368 | 3_1:+92561298 | None:intergenic |
| TGATGAGATACTACTCCATA+TGG | 0.496687 | 3_1:-92558855 | Msa0388200:CDS |
| ACCATCGGAAGGACAATCTT+CGG | 0.508376 | 3_1:+92561177 | None:intergenic |
| TCTTCACCAAATGTGACAAA+AGG | 0.508839 | 3_1:-92559003 | Msa0388200:CDS |
| TATCTCATCACGGCCTTGAT+GGG | 0.511175 | 3_1:+92558868 | None:intergenic |
| TGGTTGATTTGCCTGGATAT+GGG | 0.512221 | 3_1:-92560909 | Msa0388200:intron |
| TGCGCCGCAGGAACTTAGAA+TGG | 0.519575 | 3_1:-92560094 | Msa0388200:CDS |
| TACTCCATATGGCCCAGCTC+CGG | 0.520727 | 3_1:-92558844 | Msa0388200:CDS |
| AGGATAACCTTGGTAGATGA+AGG | 0.521781 | 3_1:+92561497 | None:intergenic |
| AAGCGATGATTTCCCAACAT+TGG | 0.526481 | 3_1:+92561126 | None:intergenic |
| AAGTTAAAGCGAGTTTCTTG+CGG | 0.528038 | 3_1:+92561086 | None:intergenic |
| ACTAGTAATGTCACCCATCA+AGG | 0.529857 | 3_1:-92558881 | Msa0388200:CDS |
| AACCATACATACCCATATCC+AGG | 0.530783 | 3_1:+92560898 | None:intergenic |
| AACACGCGGACGCGGTGTTG+TGG | 0.534481 | 3_1:+92561545 | None:intergenic |
| CTGGCTCAAGCACTAGTTTG+CGG | 0.535588 | 3_1:-92558816 | Msa0388200:exon |
| GACAACGCAAGAATCTTAAA+CGG | 0.544090 | 3_1:-92561277 | Msa0388200:CDS |
| AGTTAATGATAGTTGGTACC+TGG | 0.544396 | 3_1:-92560929 | Msa0388200:CDS |
| ATAGAGTCTGCGAGAAAATG+AGG | 0.546270 | 3_1:+92561450 | None:intergenic |
| TTTCCTTAACCGGTCAACAT+TGG | 0.555418 | 3_1:-92560046 | Msa0388200:CDS |
| GATACGGTCGGTTTCTCAAG+TGG | 0.563030 | 3_1:+92561599 | None:intergenic |
| GAGCCAGTAGTTCCGGAGCT+GGG | 0.563845 | 3_1:+92558832 | None:intergenic |
| AGTAAAACATAAAGTAACTC+AGG | 0.583673 | 3_1:+92558744 | None:intergenic |
| TTGATCTTGAGTATGCTGCT+TGG | 0.585806 | 3_1:-92559978 | Msa0388200:CDS |
| ACATTACTAGTCATGATCCA+TGG | 0.586698 | 3_1:+92558893 | None:intergenic |
| AAAAGGGAAAAGGATAACCT+TGG | 0.589953 | 3_1:+92561487 | None:intergenic |
| CATATCCAGGCAAATCAACC+AGG | 0.592486 | 3_1:+92560911 | None:intergenic |
| ACCGAAGATTGTCCTTCCGA+TGG | 0.599185 | 3_1:-92561178 | Msa0388200:CDS |
| CGACCAACAAGAGCGAACTC+AGG | 0.603551 | 3_1:+92561151 | None:intergenic |
| GCTTTAACTTCAAAGAAACC+TGG | 0.605040 | 3_1:-92561073 | Msa0388200:intron |
| TATTGAGAAACACGCGGACG+CGG | 0.608258 | 3_1:+92561537 | None:intergenic |
| ATACGGTCGGTTTCTCAAGT+GGG | 0.609144 | 3_1:+92561600 | None:intergenic |
| AGACCGAAACCAATGTTGAC+CGG | 0.614690 | 3_1:+92560037 | None:intergenic |
| TGGTTGTCCTTCATCTACCA+AGG | 0.620273 | 3_1:-92561504 | Msa0388200:CDS |
| ATACCCTTAAGTATTCAAGA+TGG | 0.623327 | 3_1:+92558768 | None:intergenic |
| AGCGAACTCAGGAAGACCAT+CGG | 0.623377 | 3_1:+92561162 | None:intergenic |
| CAATCCATTCTAAGTTCCTG+CGG | 0.623495 | 3_1:+92560090 | None:intergenic |
| AGTCATGATCCATGGAGGCA+CGG | 0.640377 | 3_1:+92558901 | None:intergenic |
| TGAGTGACATGAGTGTTTGG+AGG | 0.643541 | 3_1:+92561301 | None:intergenic |
| AACTCAGGAAGACCATCGGA+AGG | 0.685453 | 3_1:+92561166 | None:intergenic |
| TATGGAGTAGTATCTCATCA+CGG | 0.704699 | 3_1:+92558858 | None:intergenic |
| ACACTCTATTGAGAAACACG+CGG | 0.774669 | 3_1:+92561531 | None:intergenic |
| TTACTAGTCATGATCCATGG+AGG | 0.783256 | 3_1:+92558896 | None:intergenic |
| GTGTTGTGGAAATATCTCAG+CGG | 0.800177 | 3_1:+92561559 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTTCGCAAATTATA+AGG | + | chr3_1:92559201-92559220 | None:intergenic | 15.0% |
| !!! | TTGTATATTTTTTTGTTTGT+AGG | - | chr3_1:92559226-92559245 | Msa0388200:intron | 15.0% |
| !!! | TGTATATTTTTTTGTTTGTA+GGG | - | chr3_1:92559227-92559246 | Msa0388200:intron | 15.0% |
| !!! | TTGTTTTATGTTACAAATTT+GGG | - | chr3_1:92559356-92559375 | Msa0388200:intron | 15.0% |
| !! | AATTTAAATATTATGAACCA+AGG | - | chr3_1:92560637-92560656 | Msa0388200:intron | 15.0% |
| !!! | CTTGTTTTATGTTACAAATT+TGG | - | chr3_1:92559355-92559374 | Msa0388200:intron | 20.0% |
| !!! | TGTTTTATGTTACAAATTTG+GGG | - | chr3_1:92559357-92559376 | Msa0388200:intron | 20.0% |
| !! | ATACTAACATGTTTGTATAT+TGG | + | chr3_1:92559403-92559422 | None:intergenic | 20.0% |
| !! | AATATACAAACATGTTAGTA+TGG | - | chr3_1:92559402-92559421 | Msa0388200:intron | 20.0% |
| !! | AGGATTCCATTATTTATAAA+AGG | - | chr3_1:92559472-92559491 | Msa0388200:intron | 20.0% |
| !! | TTCCATTATTTATAAAAGGT+TGG | - | chr3_1:92559476-92559495 | Msa0388200:intron | 20.0% |
| !!! | TTCCAACCTTTTATAAATAA+TGG | + | chr3_1:92559481-92559500 | None:intergenic | 20.0% |
| !!! | ATTTTAGTCTCATATTGTTA+AGG | - | chr3_1:92559717-92559736 | Msa0388200:intron | 20.0% |
| !! | GAAATTAACTCATAAAATGA+GGG | + | chr3_1:92559779-92559798 | None:intergenic | 20.0% |
| !! | AATTTCTTCATTAGAAAATC+TGG | - | chr3_1:92560278-92560297 | Msa0388200:intron | 20.0% |
| !!! | TTATTAAAAAGTACCATTCT+CGG | + | chr3_1:92560414-92560433 | None:intergenic | 20.0% |
| !! | TTATGATATATGAACAGATA+AGG | - | chr3_1:92560585-92560604 | Msa0388200:intron | 20.0% |
| !! | TATGATATATGAACAGATAA+GGG | - | chr3_1:92560586-92560605 | Msa0388200:intron | 20.0% |
| !!! | TCAAAATTAACTTTTCTTCA+AGG | + | chr3_1:92560673-92560692 | None:intergenic | 20.0% |
| !! | AGGAAAATTAAATTATACCA+GGG | + | chr3_1:92561161-92561180 | None:intergenic | 20.0% |
| !! | AAGGAAAATTAAATTATACC+AGG | + | chr3_1:92561162-92561181 | None:intergenic | 20.0% |
| !!! | GAATTTAGAATTTGAATCAT+TGG | + | chr3_1:92561523-92561542 | None:intergenic | 20.0% |
| !!! | AATGCATTTCATTTGATTTT+TGG | + | chr3_1:92561610-92561629 | None:intergenic | 20.0% |
| ! | TAGTATAATTTGAGCATCAT+TGG | + | chr3_1:92558980-92558999 | None:intergenic | 25.0% |
| ! | TGTAATAATAATAAGAGACC+AGG | + | chr3_1:92559153-92559172 | None:intergenic | 25.0% |
| !!! | ATTTTCGAGTTAATGATAGT+TGG | - | chr3_1:92559269-92559288 | Msa0388200:intron | 25.0% |
| ! | TAAAACAAGATTGCTTTGTA+AGG | + | chr3_1:92559344-92559363 | None:intergenic | 25.0% |
| ! | AATACATATATGCATTCCAT+TGG | + | chr3_1:92559549-92559568 | None:intergenic | 25.0% |
| ! | ATGGAATGCATATATGTATT+TGG | - | chr3_1:92559549-92559568 | Msa0388200:intron | 25.0% |
| ! | TATTTATGCCCTACAAAATT+CGG | + | chr3_1:92559645-92559664 | None:intergenic | 25.0% |
| ! | CGAAATTAACTCATAAAATG+AGG | + | chr3_1:92559780-92559799 | None:intergenic | 25.0% |
| ! | ACCTAATGAAAAGAACATAA+AGG | + | chr3_1:92560084-92560103 | None:intergenic | 25.0% |
| ! | ACATTGTTACATTGTTTACA+GGG | + | chr3_1:92560384-92560403 | None:intergenic | 25.0% |
| !! | TTCTTATTTAAAGTAGAGGA+GGG | + | chr3_1:92560869-92560888 | None:intergenic | 25.0% |
| !! | GAAGTTCTTATTTAAAGTAG+AGG | + | chr3_1:92560873-92560892 | None:intergenic | 25.0% |
| !! | TTGGGGTTAACAATTTATTT+TGG | - | chr3_1:92561128-92561147 | Msa0388200:CDS | 25.0% |
| ! | AAAAGGAAGAAGAAAAAGAA+TGG | - | chr3_1:92561219-92561238 | Msa0388200:CDS | 25.0% |
| ! | AAATCATTGACATTATCTTC+AGG | + | chr3_1:92561255-92561274 | None:intergenic | 25.0% |
| !! | AGATAATGTCAATGATTTTC+AGG | - | chr3_1:92561257-92561276 | Msa0388200:CDS | 25.0% |
| ! | AGTAAAACATAAAGTAACTC+AGG | + | chr3_1:92561464-92561483 | None:intergenic | 25.0% |
| TTTCTCAATAGAGTGTGATA+TGG | - | chr3_1:92558681-92558700 | Msa0388200:three_prime_UTR | 30.0% | |
| TGAAATTGTGAAAAGGGAAA+AGG | + | chr3_1:92558731-92558750 | None:intergenic | 30.0% | |
| GGAAGATGAAATTGTGAAAA+GGG | + | chr3_1:92558737-92558756 | None:intergenic | 30.0% | |
| AGGAAGATGAAATTGTGAAA+AGG | + | chr3_1:92558738-92558757 | None:intergenic | 30.0% | |
| ! | TTTGTTTAAGAGTGTGGTTA+AGG | + | chr3_1:92558791-92558810 | None:intergenic | 30.0% |
| !! | GTTATTATGGGTTCTAGATT+TGG | + | chr3_1:92558844-92558863 | None:intergenic | 30.0% |
| !!! | AAGAGTTTTTCGAGTGATAA+GGG | + | chr3_1:92558880-92558899 | None:intergenic | 30.0% |
| !! | TATGGGTATGTATGGTTTTA+AGG | - | chr3_1:92559313-92559332 | Msa0388200:intron | 30.0% |
| ACAAATTTGGGGATTAACAT+TGG | - | chr3_1:92559368-92559387 | Msa0388200:intron | 30.0% | |
| TCACATTGCCAAAAATTCTT+GGG | - | chr3_1:92559523-92559542 | Msa0388200:intron | 30.0% | |
| ! | TATTGGAACCGAATTTTGTA+GGG | - | chr3_1:92559634-92559653 | Msa0388200:intron | 30.0% |
| !! | GAGTGAAATTCTAGTTCATA+TGG | - | chr3_1:92559801-92559820 | Msa0388200:intron | 30.0% |
| !! | TCTGACATTTAATTTGTCTC+TGG | - | chr3_1:92559911-92559930 | Msa0388200:intron | 30.0% |
| GTAATCATACAAACTAGCAT+TGG | + | chr3_1:92559961-92559980 | None:intergenic | 30.0% | |
| TTGTAGTTATGCTGAAGAAA+AGG | + | chr3_1:92560002-92560021 | None:intergenic | 30.0% | |
| ! | GCCTTTATGTTCTTTTCATT+AGG | - | chr3_1:92560080-92560099 | Msa0388200:CDS | 30.0% |
| !! | TCAAGATCAATCTTTTTAGC+AGG | + | chr3_1:92560217-92560236 | None:intergenic | 30.0% |
| TTCTTCATTAGAAAATCTGG+TGG | - | chr3_1:92560281-92560300 | Msa0388200:intron | 30.0% | |
| CACATTGTTACATTGTTTAC+AGG | + | chr3_1:92560385-92560404 | None:intergenic | 30.0% | |
| GTCAACTTAAAATCAAGTGA+CGG | + | chr3_1:92560465-92560484 | None:intergenic | 30.0% | |
| CGTTTCTCTTCTATATAGAT+GGG | + | chr3_1:92560532-92560551 | None:intergenic | 30.0% | |
| TCGTTTCTCTTCTATATAGA+TGG | + | chr3_1:92560533-92560552 | None:intergenic | 30.0% | |
| TAGCACTTGATATACTCTAA+AGG | - | chr3_1:92560807-92560826 | Msa0388200:intron | 30.0% | |
| TAAAGGTCAGATCATAAAGA+AGG | - | chr3_1:92560824-92560843 | Msa0388200:intron | 30.0% | |
| ! | TCTTATTTAAAGTAGAGGAG+GGG | + | chr3_1:92560868-92560887 | None:intergenic | 30.0% |
| ! | GTTCTTATTTAAAGTAGAGG+AGG | + | chr3_1:92560870-92560889 | None:intergenic | 30.0% |
| ! | ATGTAGCACATATACACTTT+TGG | - | chr3_1:92560927-92560946 | Msa0388200:CDS | 30.0% |
| !! | TTTTGGTTGAAGTTGTGTTT+GGG | - | chr3_1:92560944-92560963 | Msa0388200:CDS | 30.0% |
| TCTACTAAGTAGTTAGACAT+CGG | + | chr3_1:92561108-92561127 | None:intergenic | 30.0% | |
| TGTCTAACTACTTAGTAGAT+TGG | - | chr3_1:92561109-92561128 | Msa0388200:CDS | 30.0% | |
| GTCTAACTACTTAGTAGATT+GGG | - | chr3_1:92561110-92561129 | Msa0388200:CDS | 30.0% | |
| TCTAACTACTTAGTAGATTG+GGG | - | chr3_1:92561111-92561130 | Msa0388200:CDS | 30.0% | |
| !!! | TTTATTTTGGTAATTGACCC+TGG | - | chr3_1:92561141-92561160 | Msa0388200:CDS | 30.0% |
| TGGTGAAGATTAATGTCATT+GGG | + | chr3_1:92561191-92561210 | None:intergenic | 30.0% | |
| TTGGTGAAGATTAATGTCAT+TGG | + | chr3_1:92561192-92561211 | None:intergenic | 30.0% | |
| TTGTCCATCTTGAATACTTA+AGG | - | chr3_1:92561433-92561452 | Msa0388200:CDS | 30.0% | |
| TGTCCATCTTGAATACTTAA+GGG | - | chr3_1:92561434-92561453 | Msa0388200:CDS | 30.0% | |
| ATACCCTTAAGTATTCAAGA+TGG | + | chr3_1:92561440-92561459 | None:intergenic | 30.0% | |
| TTAGAATTTGAATCATTGGC+TGG | + | chr3_1:92561519-92561538 | None:intergenic | 30.0% | |
| AAAAGGGAAAAGGATAACCT+TGG | + | chr3_1:92558721-92558740 | None:intergenic | 35.0% | |
| ! | GAAGTTGTGAGAGATGATTT+TGG | + | chr3_1:92558817-92558836 | None:intergenic | 35.0% |
| !!! | TCGGTTTTAGGGGTTATTAT+GGG | + | chr3_1:92558856-92558875 | None:intergenic | 35.0% |
| !!! | TTCGGTTTTAGGGGTTATTA+TGG | + | chr3_1:92558857-92558876 | None:intergenic | 35.0% |
| !!! | TTTTTCGAGTGATAAGGGTT+CGG | + | chr3_1:92558875-92558894 | None:intergenic | 35.0% |
| !!! | GAAGAGTTTTTCGAGTGATA+AGG | + | chr3_1:92558881-92558900 | None:intergenic | 35.0% |
| GACAACGCAAGAATCTTAAA+CGG | - | chr3_1:92558928-92558947 | Msa0388200:CDS | 35.0% | |
| AAGTTAAAGCGAGTTTCTTG+CGG | + | chr3_1:92559122-92559141 | None:intergenic | 35.0% | |
| ! | GCTTTAACTTCAAAGAAACC+TGG | - | chr3_1:92559132-92559151 | Msa0388200:intron | 35.0% |
| ! | AGTTAATGATAGTTGGTACC+TGG | - | chr3_1:92559276-92559295 | Msa0388200:intron | 35.0% |
| GTGTCAAACATCATAACAGT+AGG | - | chr3_1:92559452-92559471 | Msa0388200:intron | 35.0% | |
| CTCACATTGCCAAAAATTCT+TGG | - | chr3_1:92559522-92559541 | Msa0388200:intron | 35.0% | |
| AAACCCGTTTAGCATAGTAT+TGG | - | chr3_1:92559617-92559636 | Msa0388200:intron | 35.0% | |
| GTTCCAATACTATGCTAAAC+GGG | + | chr3_1:92559623-92559642 | None:intergenic | 35.0% | |
| GGTTCCAATACTATGCTAAA+CGG | + | chr3_1:92559624-92559643 | None:intergenic | 35.0% | |
| ! | GTATTGGAACCGAATTTTGT+AGG | - | chr3_1:92559633-92559652 | Msa0388200:intron | 35.0% |
| CTCATATTGTTAAGGTTCCT+TGG | - | chr3_1:92559725-92559744 | Msa0388200:intron | 35.0% | |
| AGCTTTCTACAAAACTGAAC+AGG | + | chr3_1:92560039-92560058 | None:intergenic | 35.0% | |
| CCAAAGACTATTTCCTTAAC+CGG | - | chr3_1:92560149-92560168 | Msa0388200:intron | 35.0% | |
| !! | AATCTTTTTAGCAGGAATGC+TGG | + | chr3_1:92560209-92560228 | None:intergenic | 35.0% |
| CAGGGCATGTAAAGATAAAA+TGG | + | chr3_1:92560366-92560385 | None:intergenic | 35.0% | |
| !!! | TTTTAAGTTGACGACATCTG+TGG | - | chr3_1:92560473-92560492 | Msa0388200:intron | 35.0% |
| !! | CTTCTATATAGATGGGTTGT+AGG | + | chr3_1:92560525-92560544 | None:intergenic | 35.0% |
| ATACTGTCATAGCACATGTT+AGG | - | chr3_1:92560554-92560573 | Msa0388200:intron | 35.0% | |
| !! | CTTTTGGTTGAAGTTGTGTT+TGG | - | chr3_1:92560943-92560962 | Msa0388200:CDS | 35.0% |
| ATAGACACTGGTAGTAATTG+AGG | + | chr3_1:92561034-92561053 | None:intergenic | 35.0% | |
| ! | AACAATTGACTCATAGACAC+TGG | + | chr3_1:92561046-92561065 | None:intergenic | 35.0% |
| TAATGTCATTGGGATCTGAA+AGG | + | chr3_1:92561181-92561200 | None:intergenic | 35.0% | |
| TCTTCACCAAATGTGACAAA+AGG | - | chr3_1:92561202-92561221 | Msa0388200:CDS | 35.0% | |
| ! | CTTCTTCCTTTTGTCACATT+TGG | + | chr3_1:92561211-92561230 | None:intergenic | 35.0% |
| AGGAAGAAGAAAAAGAATGG+AGG | - | chr3_1:92561222-92561241 | Msa0388200:CDS | 35.0% | |
| ACATTACTAGTCATGATCCA+TGG | + | chr3_1:92561315-92561334 | None:intergenic | 35.0% | |
| TATGGAGTAGTATCTCATCA+CGG | + | chr3_1:92561350-92561369 | None:intergenic | 35.0% | |
| TGATGAGATACTACTCCATA+TGG | - | chr3_1:92561350-92561369 | Msa0388200:CDS | 35.0% | |
| GTGTTGTGGAAATATCTCAG+CGG | + | chr3_1:92558649-92558668 | None:intergenic | 40.0% | |
| ACACTCTATTGAGAAACACG+CGG | + | chr3_1:92558677-92558696 | None:intergenic | 40.0% | |
| AGGATAACCTTGGTAGATGA+AGG | + | chr3_1:92558711-92558730 | None:intergenic | 40.0% | |
| ATAGAGTCTGCGAGAAAATG+AGG | + | chr3_1:92558758-92558777 | None:intergenic | 40.0% | |
| !! | TGGTGGTTTGTTTAAGAGTG+TGG | + | chr3_1:92558797-92558816 | None:intergenic | 40.0% |
| ! | GTTGTGAGAGATGATTTTGG+TGG | + | chr3_1:92558814-92558833 | None:intergenic | 40.0% |
| !! | TGATAAGGGTTCGGTTTTAG+GGG | + | chr3_1:92558866-92558885 | None:intergenic | 40.0% |
| !! | GTGATAAGGGTTCGGTTTTA+GGG | + | chr3_1:92558867-92558886 | None:intergenic | 40.0% |
| !! | AGTGATAAGGGTTCGGTTTT+AGG | + | chr3_1:92558868-92558887 | None:intergenic | 40.0% |
| TTGTTGGTCGTTCCAATGTT+GGG | - | chr3_1:92559067-92559086 | Msa0388200:intron | 40.0% | |
| AAGCGATGATTTCCCAACAT+TGG | + | chr3_1:92559082-92559101 | None:intergenic | 40.0% | |
| !! | TGGTTGATTTGCCTGGATAT+GGG | - | chr3_1:92559296-92559315 | Msa0388200:intron | 40.0% |
| AACCATACATACCCATATCC+AGG | + | chr3_1:92559310-92559329 | None:intergenic | 40.0% | |
| ! | TCCATTGGCCCAAGAATTTT+TGG | + | chr3_1:92559534-92559553 | None:intergenic | 40.0% |
| TCGATCTCACTCTCAAAAGT+TGG | + | chr3_1:92559598-92559617 | None:intergenic | 40.0% | |
| ATGTATACATTGCACAGCCA+AGG | + | chr3_1:92559745-92559764 | None:intergenic | 40.0% | |
| CAATCCATTCTAAGTTCCTG+CGG | + | chr3_1:92560118-92560137 | None:intergenic | 40.0% | |
| ! | GCAGGAACTTAGAATGGATT+GGG | - | chr3_1:92560117-92560136 | Msa0388200:intron | 40.0% |
| CCGGTTAAGGAAATAGTCTT+TGG | + | chr3_1:92560152-92560171 | None:intergenic | 40.0% | |
| TTTCCTTAACCGGTCAACAT+TGG | - | chr3_1:92560159-92560178 | Msa0388200:intron | 40.0% | |
| AAACCAATGTTGACCGGTTA+AGG | + | chr3_1:92560165-92560184 | None:intergenic | 40.0% | |
| !! | TAACCGGTCAACATTGGTTT+CGG | - | chr3_1:92560165-92560184 | Msa0388200:intron | 40.0% |
| TTGATCTTGAGTATGCTGCT+TGG | - | chr3_1:92560227-92560246 | Msa0388200:intron | 40.0% | |
| AAGAATCGATAAGAGCTGAG+CGG | - | chr3_1:92560324-92560343 | Msa0388200:intron | 40.0% | |
| CAATGTGTATGTACCGAGAA+TGG | - | chr3_1:92560398-92560417 | Msa0388200:intron | 40.0% | |
| ATTATGAACCAAGGTAAGCG+TGG | - | chr3_1:92560646-92560665 | Msa0388200:intron | 40.0% | |
| CGTGGCTTCTATTTAGATAG+AGG | + | chr3_1:92560708-92560727 | None:intergenic | 40.0% | |
| AAGAGTAGTTCATCTACACC+AGG | - | chr3_1:92560765-92560784 | Msa0388200:intron | 40.0% | |
| TAAAGAAGGAAAGCCTCTAG+CGG | - | chr3_1:92560838-92560857 | Msa0388200:intron | 40.0% | |
| CATGGAAAGTGGATCACTTA+AGG | + | chr3_1:92560895-92560914 | None:intergenic | 40.0% | |
| ATGTGCTACATATACTGCCT+AGG | + | chr3_1:92560918-92560937 | None:intergenic | 40.0% | |
| TGCGAGACAATGATATGTGT+CGG | + | chr3_1:92560973-92560992 | None:intergenic | 40.0% | |
| TTAGACATCGGACATAGTAG+TGG | + | chr3_1:92561096-92561115 | None:intergenic | 40.0% | |
| !!! | GATTTTCAGGAGTTGATACG+TGG | - | chr3_1:92561270-92561289 | Msa0388200:CDS | 40.0% |
| TTACTAGTCATGATCCATGG+AGG | + | chr3_1:92561312-92561331 | None:intergenic | 40.0% | |
| ACTAGTAATGTCACCCATCA+AGG | - | chr3_1:92561324-92561343 | Msa0388200:CDS | 40.0% | |
| AGTTTGCGGCATTATGTTGT+CGG | - | chr3_1:92561403-92561422 | Msa0388200:CDS | 40.0% | |
| ! | ATACGGTCGGTTTCTCAAGT+GGG | + | chr3_1:92558608-92558627 | None:intergenic | 45.0% |
| !! | GAGTGTTTTTGCTCGCGATA+CGG | + | chr3_1:92558625-92558644 | None:intergenic | 45.0% |
| TGGTTGTCCTTCATCTACCA+AGG | - | chr3_1:92558701-92558720 | Msa0388200:three_prime_UTR | 45.0% | |
| TGAGTGACATGAGTGTTTGG+AGG | + | chr3_1:92558907-92558926 | None:intergenic | 45.0% | |
| TCGTGAGTGACATGAGTGTT+TGG | + | chr3_1:92558910-92558929 | None:intergenic | 45.0% | |
| ACCATCGGAAGGACAATCTT+CGG | + | chr3_1:92559031-92559050 | None:intergenic | 45.0% | |
| CTTGTTGGTCGTTCCAATGT+TGG | - | chr3_1:92559066-92559085 | Msa0388200:intron | 45.0% | |
| CATATCCAGGCAAATCAACC+AGG | + | chr3_1:92559297-92559316 | None:intergenic | 45.0% | |
| !! | CTGGTTGATTTGCCTGGATA+TGG | - | chr3_1:92559295-92559314 | Msa0388200:intron | 45.0% |
| TGCCTGGATATGGGTATGTA+TGG | - | chr3_1:92559305-92559324 | Msa0388200:intron | 45.0% | |
| GCCAAAAATTCTTGGGCCAA+TGG | - | chr3_1:92559530-92559549 | Msa0388200:intron | 45.0% | |
| CGCAGGAACTTAGAATGGAT+TGG | - | chr3_1:92560116-92560135 | Msa0388200:intron | 45.0% | |
| AGACCGAAACCAATGTTGAC+CGG | + | chr3_1:92560171-92560190 | None:intergenic | 45.0% | |
| ! | TCTTGAGTATGCTGCTTGGT+TGG | - | chr3_1:92560231-92560250 | Msa0388200:intron | 45.0% |
| ! | CTTGAGTATGCTGCTTGGTT+GGG | - | chr3_1:92560232-92560251 | Msa0388200:intron | 45.0% |
| TGCTTGGTTGGGTGAGAATA+AGG | - | chr3_1:92560243-92560262 | Msa0388200:intron | 45.0% | |
| TGGTTATGTTGCGACTTGTG+TGG | - | chr3_1:92560301-92560320 | Msa0388200:intron | 45.0% | |
| AGTTGACGACATCTGTGGAT+CGG | - | chr3_1:92560478-92560497 | Msa0388200:intron | 45.0% | |
| CACAGGTTTGATGTTAGACG+TGG | + | chr3_1:92560726-92560745 | None:intergenic | 45.0% | |
| CAATACAGCATGAGTGACAC+AGG | + | chr3_1:92560743-92560762 | None:intergenic | 45.0% | |
| GTAGTTCATCTACACCAGGT+TGG | - | chr3_1:92560769-92560788 | Msa0388200:intron | 45.0% | |
| CTACATATACTGCCTAGGCA+TGG | + | chr3_1:92560913-92560932 | None:intergenic | 45.0% | |
| TATCTCATCACGGCCTTGAT+GGG | + | chr3_1:92561340-92561359 | None:intergenic | 45.0% | |
| !!! | AATAATTTTTAATATAGTTA+TGG | - | chr3_1:92560429-92560448 | Msa0388200:intron | 5.0% |
| ! | GATACGGTCGGTTTCTCAAG+TGG | + | chr3_1:92558609-92558628 | None:intergenic | 50.0% |
| ! | GTTTTTGCTCGCGATACGGT+CGG | + | chr3_1:92558621-92558640 | None:intergenic | 50.0% |
| TATTGAGAAACACGCGGACG+CGG | + | chr3_1:92558671-92558690 | None:intergenic | 50.0% | |
| ACCGAAGATTGTCCTTCCGA+TGG | - | chr3_1:92559027-92559046 | Msa0388200:intron | 50.0% | |
| AACTCAGGAAGACCATCGGA+AGG | + | chr3_1:92559042-92559061 | None:intergenic | 50.0% | |
| AGCGAACTCAGGAAGACCAT+CGG | + | chr3_1:92559046-92559065 | None:intergenic | 50.0% | |
| CTTCCTGAGTTCGCTCTTGT+TGG | - | chr3_1:92559051-92559070 | Msa0388200:intron | 50.0% | |
| !! | TGGTACCTGGTTGATTTGCC+TGG | - | chr3_1:92559289-92559308 | Msa0388200:intron | 50.0% |
| GGCTTCTAGATGAGCAAAGC+CGG | + | chr3_1:92560504-92560523 | None:intergenic | 50.0% | |
| TTCAAGGTCCACGCTTACCT+TGG | + | chr3_1:92560657-92560676 | None:intergenic | 50.0% | |
| TGCAGCTTGATTGTCCAACC+TGG | + | chr3_1:92560786-92560805 | None:intergenic | 50.0% | |
| GTGATCCACTTTCCATGCCT+AGG | - | chr3_1:92560898-92560917 | Msa0388200:intron | 50.0% | |
| TACTGCCTAGGCATGGAAAG+TGG | + | chr3_1:92560906-92560925 | None:intergenic | 50.0% | |
| AGTCATGATCCATGGAGGCA+CGG | + | chr3_1:92561307-92561326 | None:intergenic | 50.0% | |
| GTATCTCATCACGGCCTTGA+TGG | + | chr3_1:92561341-92561360 | None:intergenic | 50.0% | |
| AGTGCTTGAGCCAGTAGTTC+CGG | + | chr3_1:92561383-92561402 | None:intergenic | 50.0% | |
| ! | CTGGCTCAAGCACTAGTTTG+CGG | - | chr3_1:92561389-92561408 | Msa0388200:CDS | 50.0% |
| CGGCATTATGTTGTCGGAGT+TGG | - | chr3_1:92561409-92561428 | Msa0388200:CDS | 50.0% | |
| CGACCAACAAGAGCGAACTC+AGG | + | chr3_1:92559057-92559076 | None:intergenic | 55.0% | |
| TCAATACCCATGCTCGCGTG+TGG | + | chr3_1:92559691-92559710 | None:intergenic | 55.0% | |
| TGCGCCGCAGGAACTTAGAA+TGG | - | chr3_1:92560111-92560130 | Msa0388200:intron | 55.0% | |
| CATTCGAAACCGTGCCTCCA+TGG | - | chr3_1:92561295-92561314 | Msa0388200:CDS | 55.0% | |
| TACTCCATATGGCCCAGCTC+CGG | - | chr3_1:92561361-92561380 | Msa0388200:CDS | 55.0% | |
| CTCGCGTGTGGTGTGGGTTT+AGG | + | chr3_1:92559679-92559698 | None:intergenic | 60.0% | |
| TAGGTATGCATCTGCGCCGC+AGG | - | chr3_1:92560099-92560118 | Msa0388200:CDS | 60.0% | |
| GACGACATCTGTGGATCGGC+CGG | - | chr3_1:92560482-92560501 | Msa0388200:intron | 60.0% | |
| GAGGAGGGGTAAACCGCTAG+AGG | + | chr3_1:92560854-92560873 | None:intergenic | 60.0% | |
| AGTTCCGGAGCTGGGCCATA+TGG | + | chr3_1:92561368-92561387 | None:intergenic | 60.0% | |
| GAGCCAGTAGTTCCGGAGCT+GGG | + | chr3_1:92561376-92561395 | None:intergenic | 60.0% | |
| TGAGCCAGTAGTTCCGGAGC+TGG | + | chr3_1:92561377-92561396 | None:intergenic | 60.0% | |
| ! | AACACGCGGACGCGGTGTTG+TGG | + | chr3_1:92558663-92558682 | None:intergenic | 65.0% |
| ACCCACACCACACGCGAGCA+TGG | - | chr3_1:92559681-92559700 | Msa0388200:intron | 65.0% | |
| CCCATGCTCGCGTGTGGTGT+GGG | + | chr3_1:92559685-92559704 | None:intergenic | 65.0% | |
| CCCACACCACACGCGAGCAT+GGG | - | chr3_1:92559682-92559701 | Msa0388200:intron | 65.0% | |
| ACCCATGCTCGCGTGTGGTG+TGG | + | chr3_1:92559686-92559705 | None:intergenic | 65.0% | |
| TGGCCCAGCTCCGGAACTAC+TGG | - | chr3_1:92561370-92561389 | Msa0388200:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 92558596 | 92561631 | 92558596 | ID=Msa0388200;Name=Msa0388200 |
| chr3_1 | mRNA | 92558596 | 92561631 | 92558596 | ID=Msa0388200-mRNA-1;Parent=Msa0388200;Name=Msa0388200-mRNA-1;_AED=0.02;_eAED=0.02;_QI=104|1|1|1|1|1|4|227|301 |
| chr3_1 | exon | 92558596 | 92559041 | 92558596 | ID=Msa0388200-mRNA-1:exon:26015;Parent=Msa0388200-mRNA-1 |
| chr3_1 | exon | 92559963 | 92560125 | 92559963 | ID=Msa0388200-mRNA-1:exon:26014;Parent=Msa0388200-mRNA-1 |
| chr3_1 | exon | 92560910 | 92560979 | 92560910 | ID=Msa0388200-mRNA-1:exon:26013;Parent=Msa0388200-mRNA-1 |
| chr3_1 | exon | 92561074 | 92561631 | 92561074 | ID=Msa0388200-mRNA-1:exon:26012;Parent=Msa0388200-mRNA-1 |
| chr3_1 | five_prime_UTR | 92561528 | 92561631 | 92561528 | ID=Msa0388200-mRNA-1:five_prime_utr;Parent=Msa0388200-mRNA-1 |
| chr3_1 | CDS | 92561074 | 92561527 | 92561074 | ID=Msa0388200-mRNA-1:cds;Parent=Msa0388200-mRNA-1 |
| chr3_1 | CDS | 92560910 | 92560979 | 92560910 | ID=Msa0388200-mRNA-1:cds;Parent=Msa0388200-mRNA-1 |
| chr3_1 | CDS | 92559963 | 92560125 | 92559963 | ID=Msa0388200-mRNA-1:cds;Parent=Msa0388200-mRNA-1 |
| chr3_1 | CDS | 92558823 | 92559041 | 92558823 | ID=Msa0388200-mRNA-1:cds;Parent=Msa0388200-mRNA-1 |
| chr3_1 | three_prime_UTR | 92558596 | 92558822 | 92558596 | ID=Msa0388200-mRNA-1:three_prime_utr;Parent=Msa0388200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
