Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1368980 | AFK41227.1 | 96.694 | 121 | 3 | 1 | 1 | 120 | 21 | 141 | 3.08e-80 | 242 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1368980 | I3SLT5 | 96.694 | 121 | 3 | 1 | 1 | 120 | 21 | 141 | 1.47e-80 | 242 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0006700 | Msa1368980 | 0.817370 | 3.415581e-52 | -8.615850e-47 |
Msa0008850 | Msa1368980 | 0.824382 | 8.321947e-54 | -8.615850e-47 |
Msa0020630 | Msa1368980 | 0.817122 | 3.883521e-52 | -8.615850e-47 |
Msa0044710 | Msa1368980 | 0.809647 | 1.706007e-50 | -8.615850e-47 |
Msa0055280 | Msa1368980 | 0.839516 | 1.512194e-57 | -8.615850e-47 |
Msa0060600 | Msa1368980 | 0.805716 | 1.166988e-49 | -8.615850e-47 |
Msa0067150 | Msa1368980 | 0.804693 | 1.910925e-49 | -8.615850e-47 |
Msa0068410 | Msa1368980 | 0.860965 | 1.429653e-63 | -8.615850e-47 |
Msa0101060 | Msa1368980 | 0.846866 | 1.659170e-59 | -8.615850e-47 |
Msa0114250 | Msa1368980 | 0.821063 | 4.926090e-53 | -8.615850e-47 |
Msa1354090 | Msa1368980 | 0.810352 | 1.202848e-50 | -8.615850e-47 |
Msa1358870 | Msa1368980 | -0.813006 | 3.184353e-51 | -8.615850e-47 |
Msa1368980 | Msa1373950 | 0.820094 | 8.223947e-53 | -8.615850e-47 |
Msa1368980 | Msa1381130 | 0.802324 | 5.920449e-49 | -8.615850e-47 |
Msa1368980 | Msa1384620 | 0.815144 | 1.074320e-51 | -8.615850e-47 |
Msa1368980 | Msa1387520 | 0.813774 | 2.158729e-51 | -8.615850e-47 |
Msa1368980 | Msa1397540 | 0.821205 | 4.569569e-53 | -8.615850e-47 |
Msa1368980 | Msa1405470 | 0.803769 | 2.976075e-49 | -8.615850e-47 |
Msa1368980 | Msa1427830 | 0.830298 | 3.177773e-55 | -8.615850e-47 |
Msa1368980 | Msa1428420 | 0.803925 | 2.761862e-49 | -8.615850e-47 |
Msa1368980 | Msa1439070 | 0.816790 | 4.611769e-52 | -8.615850e-47 |
Msa1368980 | Msa1439230 | 0.803398 | 3.553979e-49 | -8.615850e-47 |
Msa1368980 | Msa1447160 | -0.825535 | 4.445999e-54 | -8.615850e-47 |
Msa1368980 | Msa1450020 | 0.807511 | 4.877223e-50 | -8.615850e-47 |
Msa1368980 | Msa1453620 | 0.806089 | 9.743313e-50 | -8.615850e-47 |
Msa1368980 | Msa1454110 | 0.838802 | 2.315407e-57 | -8.615850e-47 |
Msa1368980 | Msa1456650 | 0.819923 | 9.000465e-53 | -8.615850e-47 |
Msa1368980 | Msa1458920 | 0.804452 | 2.146029e-49 | -8.615850e-47 |
Msa1368980 | Msa1460310 | -0.855452 | 6.249187e-62 | -8.615850e-47 |
Msa0617830 | Msa1368980 | 0.831653 | 1.477537e-55 | -8.615850e-47 |
Msa0619930 | Msa1368980 | 0.807737 | 4.367575e-50 | -8.615850e-47 |
Msa0620640 | Msa1368980 | 0.846301 | 2.366614e-59 | -8.615850e-47 |
Msa0624730 | Msa1368980 | 0.800756 | 1.241079e-48 | -8.615850e-47 |
Msa0626230 | Msa1368980 | 0.818909 | 1.532513e-52 | -8.615850e-47 |
Msa0638320 | Msa1368980 | 0.807686 | 4.477494e-50 | -8.615850e-47 |
Msa0649310 | Msa1368980 | 0.823151 | 1.616294e-53 | -8.615850e-47 |
Msa0650650 | Msa1368980 | 0.834696 | 2.582218e-56 | -8.615850e-47 |
Msa0650740 | Msa1368980 | 0.836370 | 9.738383e-57 | -8.615850e-47 |
Msa0656680 | Msa1368980 | 0.809909 | 1.498508e-50 | -8.615850e-47 |
Msa0677270 | Msa1368980 | 0.809529 | 1.809287e-50 | -8.615850e-47 |
Msa0706380 | Msa1368980 | 0.818236 | 2.177658e-52 | -8.615850e-47 |
Msa0707780 | Msa1368980 | 0.802187 | 6.318459e-49 | -8.615850e-47 |
Msa0713220 | Msa1368980 | 0.804969 | 1.673778e-49 | -8.615850e-47 |
Msa0714600 | Msa1368980 | 0.819061 | 1.415415e-52 | -8.615850e-47 |
Msa0743640 | Msa1368980 | 0.807585 | 4.704081e-50 | -8.615850e-47 |
Msa0743650 | Msa1368980 | 0.835428 | 1.688098e-56 | -8.615850e-47 |
Msa0748980 | Msa1368980 | 0.824797 | 6.643733e-54 | -8.615850e-47 |
Msa0754350 | Msa1368980 | 0.800544 | 1.371581e-48 | -8.615850e-47 |
Msa0755090 | Msa1368980 | 0.815029 | 1.139482e-51 | -8.615850e-47 |
Msa0768490 | Msa1368980 | 0.818069 | 2.375888e-52 | -8.615850e-47 |
Msa0789270 | Msa1368980 | 0.868886 | 4.678775e-66 | -8.615850e-47 |
Msa0789280 | Msa1368980 | 0.866578 | 2.573056e-65 | -8.615850e-47 |
Msa0789290 | Msa1368980 | 0.865839 | 4.413019e-65 | -8.615850e-47 |
Msa0789300 | Msa1368980 | 0.866528 | 2.669677e-65 | -8.615850e-47 |
Msa0792510 | Msa1368980 | 0.831255 | 1.851721e-55 | -8.615850e-47 |
Msa0796950 | Msa1368980 | 0.816363 | 5.749348e-52 | -8.615850e-47 |
Msa0797000 | Msa1368980 | 0.814679 | 1.362330e-51 | -8.615850e-47 |
Msa0825520 | Msa1368980 | 0.812405 | 4.310158e-51 | -8.615850e-47 |
Msa0828570 | Msa1368980 | 0.859194 | 4.895795e-63 | -8.615850e-47 |
Msa0834450 | Msa1368980 | 0.804869 | 1.756195e-49 | -8.615850e-47 |
Msa0834460 | Msa1368980 | 0.831003 | 2.134632e-55 | -8.615850e-47 |
Msa0155610 | Msa1368980 | 0.805842 | 1.098143e-49 | -8.615850e-47 |
Msa0156650 | Msa1368980 | -0.805958 | 1.038153e-49 | -8.615850e-47 |
Msa0159750 | Msa1368980 | 0.818262 | 2.148034e-52 | -8.615850e-47 |
Msa0168100 | Msa1368980 | 0.807467 | 4.983955e-50 | -8.615850e-47 |
Msa0182930 | Msa1368980 | 0.819428 | 1.167530e-52 | -8.615850e-47 |
Msa0185390 | Msa1368980 | 0.807243 | 5.558778e-50 | -8.615850e-47 |
Msa0198440 | Msa1368980 | 0.831726 | 1.417255e-55 | -8.615850e-47 |
Msa0200950 | Msa1368980 | -0.817406 | 3.351975e-52 | -8.615850e-47 |
Msa0213090 | Msa1368980 | 0.810841 | 9.430000e-51 | -8.615850e-47 |
Msa0223100 | Msa1368980 | 0.865531 | 5.519138e-65 | -8.615850e-47 |
Msa0223290 | Msa1368980 | 0.870184 | 1.767538e-66 | -8.615850e-47 |
Msa0223380 | Msa1368980 | 0.842915 | 1.930947e-58 | -8.615850e-47 |
Msa1226600 | Msa1368980 | 0.806861 | 6.697439e-50 | -8.615850e-47 |
Msa1234690 | Msa1368980 | 0.804684 | 1.919811e-49 | -8.615850e-47 |
Msa1237260 | Msa1368980 | 0.813119 | 3.007495e-51 | -8.615850e-47 |
Msa1241820 | Msa1368980 | 0.826192 | 3.103739e-54 | -8.615850e-47 |
Msa1243130 | Msa1368980 | 0.814284 | 1.666418e-51 | -8.615850e-47 |
Msa1258280 | Msa1368980 | 0.804704 | 1.900814e-49 | -8.615850e-47 |
Msa1272950 | Msa1368980 | 0.848558 | 5.677300e-60 | -8.615850e-47 |
Msa1278420 | Msa1368980 | 0.820473 | 6.731708e-53 | -8.615850e-47 |
Msa1282920 | Msa1368980 | 0.808625 | 2.824676e-50 | -8.615850e-47 |
Msa1317710 | Msa1368980 | 0.845595 | 3.682894e-59 | -8.615850e-47 |
Msa1326400 | Msa1368980 | 0.810172 | 1.315750e-50 | -8.615850e-47 |
Msa1335970 | Msa1368980 | -0.803806 | 2.924610e-49 | -8.615850e-47 |
Msa0377280 | Msa1368980 | 0.868370 | 6.865737e-66 | -8.615850e-47 |
Msa0377530 | Msa1368980 | 0.853752 | 1.941459e-61 | -8.615850e-47 |
Msa0380040 | Msa1368980 | 0.817845 | 2.669788e-52 | -8.615850e-47 |
Msa0388200 | Msa1368980 | 0.812532 | 4.042917e-51 | -8.615850e-47 |
Msa0389060 | Msa1368980 | 0.826919 | 2.082657e-54 | -8.615850e-47 |
Msa0398500 | Msa1368980 | 0.801405 | 9.145598e-49 | -8.615850e-47 |
Msa0401340 | Msa1368980 | 0.822661 | 2.102748e-53 | -8.615850e-47 |
Msa0404220 | Msa1368980 | 0.823192 | 1.580717e-53 | -8.615850e-47 |
Msa0404690 | Msa1368980 | 0.852979 | 3.235755e-61 | -8.615850e-47 |
Msa0413740 | Msa1368980 | 0.807980 | 3.878314e-50 | -8.615850e-47 |
Msa0426810 | Msa1368980 | 0.858899 | 5.999101e-63 | -8.615850e-47 |
Msa0428310 | Msa1368980 | 0.801385 | 9.233957e-49 | -8.615850e-47 |
Msa0429290 | Msa1368980 | 0.815337 | 9.734493e-52 | -8.615850e-47 |
Msa0431830 | Msa1368980 | 0.817232 | 3.668574e-52 | -8.615850e-47 |
Msa0448120 | Msa1368980 | 0.831984 | 1.224006e-55 | -8.615850e-47 |
Msa0458790 | Msa1368980 | 0.818730 | 1.682755e-52 | -8.615850e-47 |
Msa0462590 | Msa1368980 | 0.867370 | 1.438451e-65 | -8.615850e-47 |
Msa0467920 | Msa1368980 | -0.844232 | 8.589727e-59 | -8.615850e-47 |
Msa0473240 | Msa1368980 | 0.806871 | 6.664122e-50 | -8.615850e-47 |
Msa0475580 | Msa1368980 | 0.819813 | 9.534880e-53 | -8.615850e-47 |
Msa1004210 | Msa1368980 | 0.825198 | 5.343105e-54 | -8.615850e-47 |
Msa1016110 | Msa1368980 | 0.804331 | 2.274211e-49 | -8.615850e-47 |
Msa1016670 | Msa1368980 | 0.815177 | 1.056743e-51 | -8.615850e-47 |
Msa1036390 | Msa1368980 | 0.813404 | 2.603781e-51 | -8.615850e-47 |
Msa1037020 | Msa1368980 | 0.942671 | 4.754424e-102 | -8.615850e-47 |
Msa1037060 | Msa1368980 | -0.807228 | 5.601508e-50 | -8.615850e-47 |
Msa1046610 | Msa1368980 | 0.810533 | 1.099508e-50 | -8.615850e-47 |
Msa1055360 | Msa1368980 | 0.809505 | 1.830842e-50 | -8.615850e-47 |
Msa1058010 | Msa1368980 | 0.802481 | 5.497658e-49 | -8.615850e-47 |
Msa1075590 | Msa1368980 | 0.856512 | 3.059659e-62 | -8.615850e-47 |
Msa1076680 | Msa1368980 | 0.811218 | 7.812904e-51 | -8.615850e-47 |
Msa1077670 | Msa1368980 | 0.912798 | 1.288851e-83 | -8.615850e-47 |
Msa1082820 | Msa1368980 | -0.812801 | 3.531840e-51 | -8.615850e-47 |
Msa1102540 | Msa1368980 | 0.816413 | 5.601333e-52 | -8.615850e-47 |
Msa0240780 | Msa1368980 | 0.812419 | 4.280404e-51 | -8.615850e-47 |
Msa0253370 | Msa1368980 | 0.841732 | 3.975572e-58 | -8.615850e-47 |
Msa0258670 | Msa1368980 | -0.802705 | 4.942550e-49 | -8.615850e-47 |
Msa0264940 | Msa1368980 | -0.856147 | 3.914768e-62 | -8.615850e-47 |
Msa0265210 | Msa1368980 | 0.816994 | 4.149266e-52 | -8.615850e-47 |
Msa0265580 | Msa1368980 | 0.801164 | 1.024293e-48 | -8.615850e-47 |
Msa0278670 | Msa1368980 | 0.829778 | 4.254864e-55 | -8.615850e-47 |
Msa0282170 | Msa1368980 | 0.818582 | 1.818373e-52 | -8.615850e-47 |
Msa0288240 | Msa1368980 | 0.834607 | 2.718304e-56 | -8.615850e-47 |
Msa0288330 | Msa1368980 | 0.806399 | 8.383894e-50 | -8.615850e-47 |
Msa0292180 | Msa1368980 | 0.826925 | 2.076083e-54 | -8.615850e-47 |
Msa0302650 | Msa1368980 | 0.848491 | 5.925868e-60 | -8.615850e-47 |
Msa0302990 | Msa1368980 | -0.855332 | 6.771315e-62 | -8.615850e-47 |
Msa0318070 | Msa1368980 | 0.837784 | 4.235967e-57 | -8.615850e-47 |
Msa0318230 | Msa1368980 | 0.802202 | 6.274683e-49 | -8.615850e-47 |
Msa0318260 | Msa1368980 | 0.802888 | 4.530462e-49 | -8.615850e-47 |
Msa0320540 | Msa1368980 | 0.800380 | 1.481182e-48 | -8.615850e-47 |
Msa0323630 | Msa1368980 | 0.804535 | 2.061776e-49 | -8.615850e-47 |
Msa0326670 | Msa1368980 | 0.821186 | 4.615627e-53 | -8.615850e-47 |
Msa0330400 | Msa1368980 | 0.839629 | 1.413169e-57 | -8.615850e-47 |
Msa0336270 | Msa1368980 | 0.811826 | 5.765436e-51 | -8.615850e-47 |
Msa0339870 | Msa1368980 | 0.819723 | 1.000012e-52 | -8.615850e-47 |
Msa0354390 | Msa1368980 | 0.817899 | 2.595232e-52 | -8.615850e-47 |
Msa1118140 | Msa1368980 | 0.800510 | 1.393067e-48 | -8.615850e-47 |
Msa1137090 | Msa1368980 | 0.847656 | 1.007512e-59 | -8.615850e-47 |
Msa1159360 | Msa1368980 | 0.834398 | 3.067651e-56 | -8.615850e-47 |
Msa1162980 | Msa1368980 | 0.865711 | 4.841811e-65 | -8.615850e-47 |
Msa1164530 | Msa1368980 | 0.936304 | 2.150068e-97 | -8.615850e-47 |
Msa1164800 | Msa1368980 | -0.813647 | 2.302527e-51 | -8.615850e-47 |
Msa1177620 | Msa1368980 | 0.866117 | 3.603875e-65 | -8.615850e-47 |
Msa1182830 | Msa1368980 | 0.837493 | 5.032049e-57 | -8.615850e-47 |
Msa1209790 | Msa1368980 | 0.804636 | 1.964605e-49 | -8.615850e-47 |
Msa1218650 | Msa1368980 | 0.802756 | 4.822732e-49 | -8.615850e-47 |
Msa1222030 | Msa1368980 | -0.816118 | 6.520456e-52 | -8.615850e-47 |
Msa0490300 | Msa1368980 | 0.815001 | 1.155910e-51 | -8.615850e-47 |
Msa0504410 | Msa1368980 | 0.825192 | 5.358476e-54 | -8.615850e-47 |
Msa0505390 | Msa1368980 | 0.807819 | 4.194669e-50 | -8.615850e-47 |
Msa0514330 | Msa1368980 | -0.809932 | 1.482079e-50 | -8.615850e-47 |
Msa0517490 | Msa1368980 | 0.838223 | 3.267069e-57 | -8.615850e-47 |
Msa0519220 | Msa1368980 | 0.834389 | 3.083388e-56 | -8.615850e-47 |
Msa0521570 | Msa1368980 | 0.811056 | 8.471659e-51 | -8.615850e-47 |
Msa0530380 | Msa1368980 | 0.800590 | 1.342076e-48 | -8.615850e-47 |
Msa0549740 | Msa1368980 | 0.807161 | 5.786866e-50 | -8.615850e-47 |
Msa0556040 | Msa1368980 | 0.833442 | 5.321984e-56 | -8.615850e-47 |
Msa0576420 | Msa1368980 | 0.810503 | 1.115754e-50 | -8.615850e-47 |
Msa0576600 | Msa1368980 | 0.823949 | 1.051767e-53 | -8.615850e-47 |
Msa0579340 | Msa1368980 | 0.836641 | 8.309753e-57 | -8.615850e-47 |
Msa0582110 | Msa1368980 | 0.812840 | 3.462987e-51 | -8.615850e-47 |
Msa0847200 | Msa1368980 | 0.807654 | 4.547704e-50 | -8.615850e-47 |
Msa0863760 | Msa1368980 | 0.802982 | 4.331799e-49 | -8.615850e-47 |
Msa0863770 | Msa1368980 | 0.834736 | 2.522172e-56 | -8.615850e-47 |
Msa0864730 | Msa1368980 | 0.805442 | 1.332555e-49 | -8.615850e-47 |
Msa0864750 | Msa1368980 | 0.804988 | 1.658132e-49 | -8.615850e-47 |
Msa0873180 | Msa1368980 | 0.804380 | 2.221078e-49 | -8.615850e-47 |
Msa0887070 | Msa1368980 | 0.802854 | 4.604390e-49 | -8.615850e-47 |
Msa0899130 | Msa1368980 | 0.811914 | 5.517311e-51 | -8.615850e-47 |
Msa0899700 | Msa1368980 | 0.826567 | 2.527048e-54 | -8.615850e-47 |
Msa0903730 | Msa1368980 | 0.833089 | 6.514380e-56 | -8.615850e-47 |
Msa0907700 | Msa1368980 | 0.810471 | 1.134043e-50 | -8.615850e-47 |
Msa0922340 | Msa1368980 | 0.802432 | 5.625906e-49 | -8.615850e-47 |
Msa0950410 | Msa1368980 | 0.819216 | 1.304916e-52 | -8.615850e-47 |
Msa0950620 | Msa1368980 | 0.805940 | 1.047355e-49 | -8.615850e-47 |
Msa0964680 | Msa1368980 | 0.826120 | 3.228684e-54 | -8.615850e-47 |
Msa0971860 | Msa1368980 | 0.803860 | 2.849831e-49 | -8.615850e-47 |
Msa0973230 | Msa1368980 | 0.827318 | 1.671928e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1368980 | MtrunA17_Chr7g0262061 | 96.694 | 121 | 3 | 1 | 1 | 120 | 233 | 353 | 4.72e-83 | 246 |
Msa1368980 | MtrunA17_Chr7g0262541 | 94.167 | 120 | 7 | 0 | 1 | 120 | 244 | 363 | 1.89e-81 | 243 |
Msa1368980 | MtrunA17_Chr1g0186111 | 61.458 | 96 | 37 | 0 | 1 | 96 | 280 | 375 | 4.19e-39 | 134 |
Msa1368980 | MtrunA17_Chr1g0186111 | 61.386 | 101 | 38 | 1 | 1 | 101 | 136 | 235 | 2.05e-35 | 124 |
Msa1368980 | MtrunA17_Chr4g0063891 | 58.889 | 90 | 37 | 0 | 1 | 90 | 169 | 258 | 1.36e-33 | 118 |
Msa1368980 | MtrunA17_Chr5g0411051 | 52.747 | 91 | 43 | 0 | 1 | 91 | 129 | 219 | 2.43e-32 | 114 |
Msa1368980 | MtrunA17_Chr2g0333081 | 51.546 | 97 | 47 | 0 | 1 | 97 | 146 | 242 | 6.25e-31 | 110 |
Msa1368980 | MtrunA17_Chr3g0104511 | 39.560 | 91 | 55 | 0 | 2 | 92 | 407 | 497 | 2.56e-17 | 76.3 |
Msa1368980 | MtrunA17_Chr5g0436741 | 36.782 | 87 | 55 | 0 | 6 | 92 | 310 | 396 | 3.38e-15 | 70.1 |
Msa1368980 | MtrunA17_Chr4g0003301 | 43.548 | 62 | 35 | 0 | 20 | 81 | 5 | 66 | 3.71e-13 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1368980 | AT4G17940.1 | 56.044 | 91 | 40 | 0 | 1 | 91 | 157 | 247 | 2.94e-34 | 119 |
Msa1368980 | AT5G20190.1 | 56.044 | 91 | 40 | 0 | 1 | 91 | 163 | 253 | 4.18e-33 | 117 |
Msa1368980 | AT1G04530.1 | 58.696 | 92 | 37 | 1 | 1 | 92 | 128 | 218 | 1.11e-30 | 111 |
Msa1368980 | AT1G04530.1 | 32.743 | 113 | 56 | 2 | 2 | 94 | 198 | 310 | 5.32e-14 | 67.0 |
Msa1368980 | AT4G32340.1 | 54.348 | 92 | 41 | 1 | 1 | 91 | 117 | 208 | 2.61e-28 | 103 |
Msa1368980 | AT1G80130.1 | 53.333 | 90 | 42 | 0 | 1 | 90 | 172 | 261 | 1.46e-27 | 103 |
Msa1368980 | AT2G29670.1 | 43.158 | 95 | 54 | 0 | 2 | 96 | 428 | 522 | 2.47e-20 | 85.5 |
Msa1368980 | AT2G29670.2 | 43.158 | 95 | 54 | 0 | 2 | 96 | 428 | 522 | 2.47e-20 | 85.5 |
Msa1368980 | AT1G07280.3 | 44.211 | 95 | 53 | 0 | 2 | 96 | 443 | 537 | 1.26e-19 | 83.2 |
Msa1368980 | AT1G07280.1 | 44.211 | 95 | 53 | 0 | 2 | 96 | 443 | 537 | 1.26e-19 | 83.2 |
Msa1368980 | AT1G07280.2 | 44.211 | 95 | 53 | 0 | 2 | 96 | 443 | 537 | 1.26e-19 | 83.2 |
Msa1368980 | AT3G47080.1 | 41.053 | 95 | 56 | 0 | 2 | 96 | 408 | 502 | 3.79e-16 | 73.6 |
Find 49 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAACCCGGCTTGTGATTTC+TGG | 0.126802 | tig0018661:+227168 | None:intergenic |
CAGTTCGTTGACTACTTAAA+TGG | 0.212815 | tig0018661:+227087 | None:intergenic |
CACAATATGGGAAGCTGGTT+TGG | 0.259822 | tig0018661:-227603 | Msa1368980:CDS |
TTATGCTCAGTTTCTGTATA+AGG | 0.290532 | tig0018661:-227952 | Msa1368980:CDS |
GGAGAAGTTCTGTCACAATA+TGG | 0.320308 | tig0018661:-227616 | Msa1368980:CDS |
GTCATTTGGATCTGCTAGTA+TGG | 0.327394 | tig0018661:+227639 | None:intergenic |
CTTGTTCTTATCCGTTCATT+TGG | 0.335935 | tig0018661:-227041 | Msa1368980:three_prime_UTR |
CCGCGTATGCAAGTTTCCTT+TGG | 0.343155 | tig0018661:-227380 | Msa1368980:CDS |
GACAGAACTTCTCCGTCATT+TGG | 0.354628 | tig0018661:+227625 | None:intergenic |
GGAAGAATATTACAAGAAAA+TGG | 0.355814 | tig0018661:-228012 | Msa1368980:five_prime_UTR |
AATGATGGAGATAGTAATCA+TGG | 0.406178 | tig0018661:-228038 | None:intergenic |
CTCAGAAACAATGGGTTCCC+AGG | 0.407926 | tig0018661:+227959 | None:intergenic |
CGCGTATGCAAGTTTCCTTT+GGG | 0.410780 | tig0018661:-227379 | Msa1368980:CDS |
ACAATATGGGAAGCTGGTTT+GGG | 0.415812 | tig0018661:-227602 | Msa1368980:CDS |
CTACTTAAATGGTTACAAAC+TGG | 0.423507 | tig0018661:+227098 | None:intergenic |
AGCATATTCTGATGCACATA+AGG | 0.436021 | tig0018661:-227226 | Msa1368980:three_prime_UTR |
CCGGGTTTCTGTTGCAGTGT+CGG | 0.438004 | tig0018661:-227154 | Msa1368980:three_prime_UTR |
TTGTATTTGTACCTGTCATC+AGG | 0.438683 | tig0018661:+227520 | None:intergenic |
TACTGCTCGTTCAAAATAGC+TGG | 0.441969 | tig0018661:+227552 | None:intergenic |
AATATTCCTCTGCTCCTTCA+CGG | 0.473833 | tig0018661:+227671 | None:intergenic |
TGGATCTGCTAGTATGGCTC+TGG | 0.483784 | tig0018661:+227645 | None:intergenic |
GAGAAGTTCTGTCACAATAT+GGG | 0.501161 | tig0018661:-227615 | Msa1368980:CDS |
ATAAAAGCACCAACTTAAGA+AGG | 0.514128 | tig0018661:-227016 | Msa1368980:three_prime_UTR |
TTTGGAGCTATGGCAACTAC+AGG | 0.520195 | tig0018661:-227294 | Msa1368980:CDS |
CATAATTCCTCAGAAACAAT+GGG | 0.520475 | tig0018661:+227951 | None:intergenic |
TCTGTCACAATATGGGAAGC+TGG | 0.524977 | tig0018661:-227608 | Msa1368980:CDS |
AGAACCAGAAATCACAAGCC+GGG | 0.539619 | tig0018661:-227172 | Msa1368980:three_prime_UTR |
ATGATGGAGATAGTAATCAT+GGG | 0.542937 | tig0018661:-228037 | None:intergenic |
TCAGAAACAATGGGTTCCCA+GGG | 0.550997 | tig0018661:+227960 | None:intergenic |
CTGGGAACCCATTGTTTCTG+AGG | 0.551696 | tig0018661:-227977 | Msa1368980:CDS |
GCATAATTCCTCAGAAACAA+TGG | 0.561255 | tig0018661:+227950 | None:intergenic |
TACAAGCTTCTCCTGATGAC+AGG | 0.573449 | tig0018661:-227531 | Msa1368980:intron |
ACAGAGGAAGACGAGGATGC+AGG | 0.575261 | tig0018661:-227354 | Msa1368980:CDS |
CCAAAGGAAACTTGCATACG+CGG | 0.576728 | tig0018661:+227380 | None:intergenic |
CGTCTTCCTCTGTGTCCCAA+AGG | 0.579496 | tig0018661:+227364 | None:intergenic |
AAAATGGTTCAGCAAAACCC+TGG | 0.581315 | tig0018661:-227996 | Msa1368980:exon |
AATGTTGAGGCAAACATTGT+GGG | 0.586251 | tig0018661:+227322 | None:intergenic |
TGGAGATAGTAATCATGGGG+TGG | 0.587358 | tig0018661:-228033 | Msa1368980:five_prime_UTR |
GAGAACCAGAAATCACAAGC+CGG | 0.603281 | tig0018661:-227173 | Msa1368980:three_prime_UTR |
CCGACACTGCAACAGAAACC+CGG | 0.605455 | tig0018661:+227154 | None:intergenic |
GCTCCAAAATGAAAATGTTG+AGG | 0.611118 | tig0018661:+227309 | None:intergenic |
AAATGGTTCAGCAAAACCCT+GGG | 0.619938 | tig0018661:-227995 | Msa1368980:exon |
AAATGTTGAGGCAAACATTG+TGG | 0.636468 | tig0018661:+227321 | None:intergenic |
ACAAGACCGTGAAGGAGCAG+AGG | 0.636751 | tig0018661:-227677 | Msa1368980:CDS |
TGATGGAGATAGTAATCATG+GGG | 0.637625 | tig0018661:-228036 | None:intergenic |
ATACTAGCAGATCCAAATGA+CGG | 0.662236 | tig0018661:-227637 | Msa1368980:CDS |
CAGTGCAAACAAGACCGTGA+AGG | 0.662241 | tig0018661:-227685 | Msa1368980:CDS |
TTGGGACACAGAGGAAGACG+AGG | 0.672619 | tig0018661:-227361 | Msa1368980:CDS |
AAGTTTCCTTTGGGACACAG+AGG | 0.726292 | tig0018661:-227370 | Msa1368980:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAAAGAATTTTCAACAAGT+TGG | + | tig0018661:227202-227221 | None:intergenic | 20.0% |
!!! | TAAAAGAATTTTCAACAAGT+TGG | + | tig0018661:227202-227221 | None:intergenic | 20.0% |
! | GGAAGAATATTACAAGAAAA+TGG | - | tig0018661:227049-227068 | Msa1368980:three_prime_UTR | 25.0% |
! | AATAGTGCATACAAAACTAT+TGG | - | tig0018661:227299-227318 | Msa1368980:CDS | 25.0% |
! | GGAAGAATATTACAAGAAAA+TGG | - | tig0018661:227049-227068 | Msa1368980:three_prime_UTR | 25.0% |
! | AATAGTGCATACAAAACTAT+TGG | - | tig0018661:227299-227318 | Msa1368980:CDS | 25.0% |
! | AATGATGGAGATAGTAATCA+TGG | - | tig0018661:227023-227042 | Msa1368980:three_prime_UTR | 30.0% |
! | ATGATGGAGATAGTAATCAT+GGG | - | tig0018661:227024-227043 | Msa1368980:three_prime_UTR | 30.0% |
CATAATTCCTCAGAAACAAT+GGG | + | tig0018661:227094-227113 | None:intergenic | 30.0% | |
TTATGCTCAGTTTCTGTATA+AGG | - | tig0018661:227109-227128 | Msa1368980:three_prime_UTR | 30.0% | |
! | TCATTTTCAACTCCAAAACT+TGG | - | tig0018661:227272-227291 | Msa1368980:exon | 30.0% |
! | GCACTATTAAAACCAAGTTT+TGG | + | tig0018661:227287-227306 | None:intergenic | 30.0% |
! | TTGCCTCAACATTTTCATTT+TGG | - | tig0018661:227730-227749 | Msa1368980:intron | 30.0% |
!!! | ACATTTTCATTTTGGAGCTA+TGG | - | tig0018661:227738-227757 | Msa1368980:intron | 30.0% |
CTACTTAAATGGTTACAAAC+TGG | + | tig0018661:227947-227966 | None:intergenic | 30.0% | |
! | TGCTTTTATTGCCAAATGAA+CGG | + | tig0018661:228015-228034 | None:intergenic | 30.0% |
!! | ATAAAAGCACCAACTTAAGA+AGG | - | tig0018661:228026-228045 | Msa1368980:five_prime_UTR | 30.0% |
! | AATGATGGAGATAGTAATCA+TGG | - | tig0018661:227023-227042 | Msa1368980:three_prime_UTR | 30.0% |
! | ATGATGGAGATAGTAATCAT+GGG | - | tig0018661:227024-227043 | Msa1368980:three_prime_UTR | 30.0% |
CATAATTCCTCAGAAACAAT+GGG | + | tig0018661:227094-227113 | None:intergenic | 30.0% | |
TTATGCTCAGTTTCTGTATA+AGG | - | tig0018661:227109-227128 | Msa1368980:three_prime_UTR | 30.0% | |
! | TCATTTTCAACTCCAAAACT+TGG | - | tig0018661:227272-227291 | Msa1368980:exon | 30.0% |
! | GCACTATTAAAACCAAGTTT+TGG | + | tig0018661:227287-227306 | None:intergenic | 30.0% |
! | TTGCCTCAACATTTTCATTT+TGG | - | tig0018661:227730-227749 | Msa1368980:intron | 30.0% |
!!! | ACATTTTCATTTTGGAGCTA+TGG | - | tig0018661:227738-227757 | Msa1368980:intron | 30.0% |
CTACTTAAATGGTTACAAAC+TGG | + | tig0018661:227947-227966 | None:intergenic | 30.0% | |
! | TGCTTTTATTGCCAAATGAA+CGG | + | tig0018661:228015-228034 | None:intergenic | 30.0% |
!! | ATAAAAGCACCAACTTAAGA+AGG | - | tig0018661:228026-228045 | Msa1368980:five_prime_UTR | 30.0% |
TGATGGAGATAGTAATCATG+GGG | - | tig0018661:227025-227044 | Msa1368980:three_prime_UTR | 35.0% | |
GCATAATTCCTCAGAAACAA+TGG | + | tig0018661:227095-227114 | None:intergenic | 35.0% | |
GAGCTATACATTGAAACAGA+AGG | + | tig0018661:227147-227166 | None:intergenic | 35.0% | |
ATACTAGCAGATCCAAATGA+CGG | - | tig0018661:227405-227424 | Msa1368980:intron | 35.0% | |
GAGAAGTTCTGTCACAATAT+GGG | - | tig0018661:227427-227446 | Msa1368980:intron | 35.0% | |
TTGTATTTGTACCTGTCATC+AGG | + | tig0018661:227525-227544 | None:intergenic | 35.0% | |
! | TTTAGATCGAGTTGCATACT+TGG | - | tig0018661:227590-227609 | Msa1368980:CDS | 35.0% |
AATGTTGAGGCAAACATTGT+GGG | + | tig0018661:227723-227742 | None:intergenic | 35.0% | |
AAATGTTGAGGCAAACATTG+TGG | + | tig0018661:227724-227743 | None:intergenic | 35.0% | |
GCTCCAAAATGAAAATGTTG+AGG | + | tig0018661:227736-227755 | None:intergenic | 35.0% | |
!!! | GCTATCAGCATTTTTTTCTC+AGG | + | tig0018661:227799-227818 | None:intergenic | 35.0% |
AGCATATTCTGATGCACATA+AGG | - | tig0018661:227816-227835 | Msa1368980:intron | 35.0% | |
! | CAGTTCGTTGACTACTTAAA+TGG | + | tig0018661:227958-227977 | None:intergenic | 35.0% |
CTTGTTCTTATCCGTTCATT+TGG | - | tig0018661:228001-228020 | Msa1368980:five_prime_UTR | 35.0% | |
TGATGGAGATAGTAATCATG+GGG | - | tig0018661:227025-227044 | Msa1368980:three_prime_UTR | 35.0% | |
GCATAATTCCTCAGAAACAA+TGG | + | tig0018661:227095-227114 | None:intergenic | 35.0% | |
GAGCTATACATTGAAACAGA+AGG | + | tig0018661:227147-227166 | None:intergenic | 35.0% | |
ATACTAGCAGATCCAAATGA+CGG | - | tig0018661:227405-227424 | Msa1368980:intron | 35.0% | |
GAGAAGTTCTGTCACAATAT+GGG | - | tig0018661:227427-227446 | Msa1368980:intron | 35.0% | |
TTGTATTTGTACCTGTCATC+AGG | + | tig0018661:227525-227544 | None:intergenic | 35.0% | |
! | TTTAGATCGAGTTGCATACT+TGG | - | tig0018661:227590-227609 | Msa1368980:CDS | 35.0% |
AATGTTGAGGCAAACATTGT+GGG | + | tig0018661:227723-227742 | None:intergenic | 35.0% | |
AAATGTTGAGGCAAACATTG+TGG | + | tig0018661:227724-227743 | None:intergenic | 35.0% | |
GCTCCAAAATGAAAATGTTG+AGG | + | tig0018661:227736-227755 | None:intergenic | 35.0% | |
!!! | GCTATCAGCATTTTTTTCTC+AGG | + | tig0018661:227799-227818 | None:intergenic | 35.0% |
AGCATATTCTGATGCACATA+AGG | - | tig0018661:227816-227835 | Msa1368980:intron | 35.0% | |
! | CAGTTCGTTGACTACTTAAA+TGG | + | tig0018661:227958-227977 | None:intergenic | 35.0% |
CTTGTTCTTATCCGTTCATT+TGG | - | tig0018661:228001-228020 | Msa1368980:five_prime_UTR | 35.0% | |
AAAATGGTTCAGCAAAACCC+TGG | - | tig0018661:227065-227084 | Msa1368980:three_prime_UTR | 40.0% | |
AAATGGTTCAGCAAAACCCT+GGG | - | tig0018661:227066-227085 | Msa1368980:three_prime_UTR | 40.0% | |
AATATTCCTCTGCTCCTTCA+CGG | + | tig0018661:227374-227393 | None:intergenic | 40.0% | |
GTCATTTGGATCTGCTAGTA+TGG | + | tig0018661:227406-227425 | None:intergenic | 40.0% | |
GGAGAAGTTCTGTCACAATA+TGG | - | tig0018661:227426-227445 | Msa1368980:intron | 40.0% | |
! | ACAATATGGGAAGCTGGTTT+GGG | - | tig0018661:227440-227459 | Msa1368980:intron | 40.0% |
TACTGCTCGTTCAAAATAGC+TGG | + | tig0018661:227493-227512 | None:intergenic | 40.0% | |
AAAATGGTTCAGCAAAACCC+TGG | - | tig0018661:227065-227084 | Msa1368980:three_prime_UTR | 40.0% | |
AAATGGTTCAGCAAAACCCT+GGG | - | tig0018661:227066-227085 | Msa1368980:three_prime_UTR | 40.0% | |
AATATTCCTCTGCTCCTTCA+CGG | + | tig0018661:227374-227393 | None:intergenic | 40.0% | |
GTCATTTGGATCTGCTAGTA+TGG | + | tig0018661:227406-227425 | None:intergenic | 40.0% | |
GGAGAAGTTCTGTCACAATA+TGG | - | tig0018661:227426-227445 | Msa1368980:intron | 40.0% | |
! | ACAATATGGGAAGCTGGTTT+GGG | - | tig0018661:227440-227459 | Msa1368980:intron | 40.0% |
TACTGCTCGTTCAAAATAGC+TGG | + | tig0018661:227493-227512 | None:intergenic | 40.0% | |
TGGAGATAGTAATCATGGGG+TGG | - | tig0018661:227028-227047 | Msa1368980:three_prime_UTR | 45.0% | |
! | TCAGAAACAATGGGTTCCCA+GGG | + | tig0018661:227085-227104 | None:intergenic | 45.0% |
GACAGAACTTCTCCGTCATT+TGG | + | tig0018661:227420-227439 | None:intergenic | 45.0% | |
TCTGTCACAATATGGGAAGC+TGG | - | tig0018661:227434-227453 | Msa1368980:intron | 45.0% | |
CACAATATGGGAAGCTGGTT+TGG | - | tig0018661:227439-227458 | Msa1368980:intron | 45.0% | |
TACAAGCTTCTCCTGATGAC+AGG | - | tig0018661:227511-227530 | Msa1368980:intron | 45.0% | |
CCAAAGGAAACTTGCATACG+CGG | + | tig0018661:227665-227684 | None:intergenic | 45.0% | |
CGCGTATGCAAGTTTCCTTT+GGG | - | tig0018661:227663-227682 | Msa1368980:CDS | 45.0% | |
!! | AAGTTTCCTTTGGGACACAG+AGG | - | tig0018661:227672-227691 | Msa1368980:CDS | 45.0% |
! | TTTGGAGCTATGGCAACTAC+AGG | - | tig0018661:227748-227767 | Msa1368980:intron | 45.0% |
GAGAACCAGAAATCACAAGC+CGG | - | tig0018661:227869-227888 | Msa1368980:intron | 45.0% | |
AGAACCAGAAATCACAAGCC+GGG | - | tig0018661:227870-227889 | Msa1368980:intron | 45.0% | |
TGGAGATAGTAATCATGGGG+TGG | - | tig0018661:227028-227047 | Msa1368980:three_prime_UTR | 45.0% | |
! | TCAGAAACAATGGGTTCCCA+GGG | + | tig0018661:227085-227104 | None:intergenic | 45.0% |
GACAGAACTTCTCCGTCATT+TGG | + | tig0018661:227420-227439 | None:intergenic | 45.0% | |
TCTGTCACAATATGGGAAGC+TGG | - | tig0018661:227434-227453 | Msa1368980:intron | 45.0% | |
CACAATATGGGAAGCTGGTT+TGG | - | tig0018661:227439-227458 | Msa1368980:intron | 45.0% | |
TACAAGCTTCTCCTGATGAC+AGG | - | tig0018661:227511-227530 | Msa1368980:intron | 45.0% | |
CCAAAGGAAACTTGCATACG+CGG | + | tig0018661:227665-227684 | None:intergenic | 45.0% | |
CGCGTATGCAAGTTTCCTTT+GGG | - | tig0018661:227663-227682 | Msa1368980:CDS | 45.0% | |
!! | AAGTTTCCTTTGGGACACAG+AGG | - | tig0018661:227672-227691 | Msa1368980:CDS | 45.0% |
! | TTTGGAGCTATGGCAACTAC+AGG | - | tig0018661:227748-227767 | Msa1368980:intron | 45.0% |
GAGAACCAGAAATCACAAGC+CGG | - | tig0018661:227869-227888 | Msa1368980:intron | 45.0% | |
AGAACCAGAAATCACAAGCC+GGG | - | tig0018661:227870-227889 | Msa1368980:intron | 45.0% | |
! | CTCAGAAACAATGGGTTCCC+AGG | + | tig0018661:227086-227105 | None:intergenic | 50.0% |
!! | CTGGGAACCCATTGTTTCTG+AGG | - | tig0018661:227084-227103 | Msa1368980:three_prime_UTR | 50.0% |
CAGTGCAAACAAGACCGTGA+AGG | - | tig0018661:227357-227376 | Msa1368980:CDS | 50.0% | |
TGGATCTGCTAGTATGGCTC+TGG | + | tig0018661:227400-227419 | None:intergenic | 50.0% | |
CCGCGTATGCAAGTTTCCTT+TGG | - | tig0018661:227662-227681 | Msa1368980:CDS | 50.0% | |
! | GAAACCCGGCTTGTGATTTC+TGG | + | tig0018661:227877-227896 | None:intergenic | 50.0% |
! | CTCAGAAACAATGGGTTCCC+AGG | + | tig0018661:227086-227105 | None:intergenic | 50.0% |
!! | CTGGGAACCCATTGTTTCTG+AGG | - | tig0018661:227084-227103 | Msa1368980:three_prime_UTR | 50.0% |
CAGTGCAAACAAGACCGTGA+AGG | - | tig0018661:227357-227376 | Msa1368980:CDS | 50.0% | |
TGGATCTGCTAGTATGGCTC+TGG | + | tig0018661:227400-227419 | None:intergenic | 50.0% | |
CCGCGTATGCAAGTTTCCTT+TGG | - | tig0018661:227662-227681 | Msa1368980:CDS | 50.0% | |
! | GAAACCCGGCTTGTGATTTC+TGG | + | tig0018661:227877-227896 | None:intergenic | 50.0% |
ACAAGACCGTGAAGGAGCAG+AGG | - | tig0018661:227365-227384 | Msa1368980:CDS | 55.0% | |
CGTCTTCCTCTGTGTCCCAA+AGG | + | tig0018661:227681-227700 | None:intergenic | 55.0% | |
TTGGGACACAGAGGAAGACG+AGG | - | tig0018661:227681-227700 | Msa1368980:CDS | 55.0% | |
ACAGAGGAAGACGAGGATGC+AGG | - | tig0018661:227688-227707 | Msa1368980:intron | 55.0% | |
CCGACACTGCAACAGAAACC+CGG | + | tig0018661:227891-227910 | None:intergenic | 55.0% | |
CCGGGTTTCTGTTGCAGTGT+CGG | - | tig0018661:227888-227907 | Msa1368980:intron | 55.0% | |
ACAAGACCGTGAAGGAGCAG+AGG | - | tig0018661:227365-227384 | Msa1368980:CDS | 55.0% | |
CGTCTTCCTCTGTGTCCCAA+AGG | + | tig0018661:227681-227700 | None:intergenic | 55.0% | |
TTGGGACACAGAGGAAGACG+AGG | - | tig0018661:227681-227700 | Msa1368980:CDS | 55.0% | |
ACAGAGGAAGACGAGGATGC+AGG | - | tig0018661:227688-227707 | Msa1368980:intron | 55.0% | |
CCGACACTGCAACAGAAACC+CGG | + | tig0018661:227891-227910 | None:intergenic | 55.0% | |
CCGGGTTTCTGTTGCAGTGT+CGG | - | tig0018661:227888-227907 | Msa1368980:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0018661 | gene | 227012 | 228052 | 227012 | ID=Msa1368980;Name=Msa1368980 |
tig0018661 | mRNA | 227012 | 228052 | 227012 | ID=Msa1368980-mRNA-1;Parent=Msa1368980;Name=Msa1368980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=56|1|1|1|1|1|3|275|120 |
tig0018661 | exon | 227012 | 227413 | 227012 | ID=Msa1368980-mRNA-1:exon:809;Parent=Msa1368980-mRNA-1 |
tig0018661 | exon | 227532 | 227704 | 227532 | ID=Msa1368980-mRNA-1:exon:808;Parent=Msa1368980-mRNA-1 |
tig0018661 | exon | 227934 | 228052 | 227934 | ID=Msa1368980-mRNA-1:exon:807;Parent=Msa1368980-mRNA-1 |
tig0018661 | five_prime_UTR | 227997 | 228052 | 227997 | ID=Msa1368980-mRNA-1:five_prime_utr;Parent=Msa1368980-mRNA-1 |
tig0018661 | CDS | 227934 | 227996 | 227934 | ID=Msa1368980-mRNA-1:cds;Parent=Msa1368980-mRNA-1 |
tig0018661 | CDS | 227532 | 227704 | 227532 | ID=Msa1368980-mRNA-1:cds;Parent=Msa1368980-mRNA-1 |
tig0018661 | CDS | 227287 | 227413 | 227287 | ID=Msa1368980-mRNA-1:cds;Parent=Msa1368980-mRNA-1 |
tig0018661 | three_prime_UTR | 227012 | 227286 | 227012 | ID=Msa1368980-mRNA-1:three_prime_utr;Parent=Msa1368980-mRNA-1 |
Gene Sequence |
Protein sequence |