Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477550 | XP_003603604.1 | 98.339 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477550 | sp|O81004|Y2287_ARATH | 59.402 | 234 | 92 | 2 | 66 | 298 | 67 | 298 | 3.46e-102 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477550 | G7J3E8 | 98.339 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 0.0 | 613 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046050 | Msa0477550 | 0.825743 | 3.969202e-54 | -8.615850e-47 |
| Msa0096020 | Msa0477550 | 0.801684 | 8.016570e-49 | -8.615850e-47 |
| Msa0140290 | Msa0477550 | 0.825930 | 3.582270e-54 | -8.615850e-47 |
| Msa0373220 | Msa0477550 | 0.805428 | 1.341364e-49 | -8.615850e-47 |
| Msa0388200 | Msa0477550 | 0.971391 | 4.325484e-133 | -8.615850e-47 |
| Msa0404070 | Msa0477550 | 0.806677 | 7.323462e-50 | -8.615850e-47 |
| Msa0427740 | Msa0477550 | -0.803152 | 3.995434e-49 | -8.615850e-47 |
| Msa0427970 | Msa0477550 | -0.801129 | 1.041447e-48 | -8.615850e-47 |
| Msa0430020 | Msa0477550 | 0.803535 | 3.328539e-49 | -8.615850e-47 |
| Msa0433670 | Msa0477550 | 0.987379 | 4.788068e-170 | -8.615850e-47 |
| Msa0437550 | Msa0477550 | 0.803087 | 4.119984e-49 | -8.615850e-47 |
| Msa0437790 | Msa0477550 | 0.835936 | 1.255417e-56 | -8.615850e-47 |
| Msa0477550 | Msa0480430 | 0.810120 | 1.349533e-50 | -8.615850e-47 |
| Msa0477550 | Msa0518570 | -0.804250 | 2.363838e-49 | -8.615850e-47 |
| Msa0477550 | Msa0519060 | 0.800158 | 1.643168e-48 | -8.615850e-47 |
| Msa0477550 | Msa0521570 | 0.970204 | 2.910283e-131 | -8.615850e-47 |
| Msa0477550 | Msa0524960 | 0.812263 | 4.629875e-51 | -8.615850e-47 |
| Msa0477550 | Msa0577050 | 0.801416 | 9.098859e-49 | -8.615850e-47 |
| Msa0477550 | Msa0614980 | 0.822114 | 2.816130e-53 | -8.615850e-47 |
| Msa0477550 | Msa0617120 | 0.812446 | 4.223062e-51 | -8.615850e-47 |
| Msa0477550 | Msa0677250 | 0.801541 | 8.578190e-49 | -8.615850e-47 |
| Msa0477550 | Msa0693500 | 0.800698 | 1.275344e-48 | -8.615850e-47 |
| Msa0477550 | Msa0705810 | 0.825405 | 4.773840e-54 | -8.615850e-47 |
| Msa0477550 | Msa0713220 | 0.802774 | 4.783685e-49 | -8.615850e-47 |
| Msa0477550 | Msa0747900 | 0.803725 | 3.039514e-49 | -8.615850e-47 |
| Msa0477550 | Msa0748980 | 0.812933 | 3.303943e-51 | -8.615850e-47 |
| Msa0477550 | Msa0790640 | 0.831087 | 2.035711e-55 | -8.615850e-47 |
| Msa0477550 | Msa0793100 | 0.821771 | 3.382714e-53 | -8.615850e-47 |
| Msa0477550 | Msa0825520 | 0.819937 | 8.935039e-53 | -8.615850e-47 |
| Msa0477550 | Msa0864730 | 0.825273 | 5.128395e-54 | -8.615850e-47 |
| Msa0477550 | Msa0864750 | 0.823550 | 1.303972e-53 | -8.615850e-47 |
| Msa0477550 | Msa0973890 | 0.806941 | 6.440045e-50 | -8.615850e-47 |
| Msa0477550 | Msa0975550 | 0.801217 | 9.991553e-49 | -8.615850e-47 |
| Msa0477550 | Msa0999480 | 0.803875 | 2.829636e-49 | -8.615850e-47 |
| Msa0477550 | Msa1019220 | -0.812672 | 3.768076e-51 | -8.615850e-47 |
| Msa0477550 | Msa1019230 | -0.817588 | 3.050987e-52 | -8.615850e-47 |
| Msa0477550 | Msa1036020 | -0.802449 | 5.580516e-49 | -8.615850e-47 |
| Msa0477550 | Msa1067910 | 0.830201 | 3.355102e-55 | -8.615850e-47 |
| Msa0477550 | Msa1177960 | 0.804410 | 2.189250e-49 | -8.615850e-47 |
| Msa0477550 | Msa1219780 | -0.845049 | 5.174307e-59 | -8.615850e-47 |
| Msa0477550 | Msa1220680 | 0.818275 | 2.133935e-52 | -8.615850e-47 |
| Msa0477550 | Msa1222030 | -0.802508 | 5.425932e-49 | -8.615850e-47 |
| Msa0477550 | Msa1228350 | 0.808666 | 2.769249e-50 | -8.615850e-47 |
| Msa0477550 | Msa1255020 | 0.815704 | 8.066960e-52 | -8.615850e-47 |
| Msa0477550 | Msa1263590 | 0.840767 | 7.130254e-58 | -8.615850e-47 |
| Msa0477550 | Msa1263670 | 0.835841 | 1.327081e-56 | -8.615850e-47 |
| Msa0477550 | Msa1266710 | -0.844985 | 5.385133e-59 | -8.615850e-47 |
| Msa0477550 | Msa1295470 | 0.813342 | 2.686606e-51 | -8.615850e-47 |
| Msa0477550 | Msa1349810 | 0.804926 | 1.708295e-49 | -8.615850e-47 |
| Msa0477550 | Msa1363690 | -0.853803 | 1.876155e-61 | -8.615850e-47 |
| Msa0477550 | Msa1369180 | 0.828512 | 8.625758e-55 | -8.615850e-47 |
| Msa0477550 | Msa1373390 | 0.832353 | 9.922299e-56 | -8.615850e-47 |
| Msa0477550 | Msa1384620 | 0.817384 | 3.391604e-52 | -8.615850e-47 |
| Msa0477550 | Msa1387520 | 0.970799 | 3.601720e-132 | -8.615850e-47 |
| Msa0477550 | Msa1395580 | 0.831269 | 1.836648e-55 | -8.615850e-47 |
| Msa0477550 | Msa1396550 | -0.844598 | 6.845977e-59 | -8.615850e-47 |
| Msa0477550 | Msa1407210 | -0.842214 | 2.964555e-58 | -8.615850e-47 |
| Msa0477550 | Msa1420600 | 0.812287 | 4.574524e-51 | -8.615850e-47 |
| Msa0477550 | Msa1425540 | 0.807449 | 5.027066e-50 | -8.615850e-47 |
| Msa0477550 | Msa1427600 | 0.806181 | 9.318648e-50 | -8.615850e-47 |
| Msa0477550 | Msa1453540 | 0.806578 | 7.684175e-50 | -8.615850e-47 |
| Msa0477550 | Msa1462600 | 0.803209 | 3.888124e-49 | -8.615850e-47 |
| Msa0253160 | Msa0477550 | 0.800585 | 1.345051e-48 | -8.615850e-47 |
| Msa0291940 | Msa0477550 | 0.806439 | 8.221440e-50 | -8.615850e-47 |
| Msa0303440 | Msa0477550 | 0.800227 | 1.590708e-48 | -8.615850e-47 |
| Msa0303500 | Msa0477550 | 0.804668 | 1.933972e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477550 | MtrunA17_Chr3g0139461 | 98.339 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 0.0 | 613 |
| Msa0477550 | MtrunA17_Chr4g0047261 | 61.538 | 234 | 87 | 2 | 66 | 298 | 64 | 295 | 5.13e-104 | 305 |
| Msa0477550 | MtrunA17_Chr3g0107041 | 39.355 | 155 | 89 | 1 | 86 | 240 | 461 | 610 | 1.15e-23 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477550 | AT5G11480.1 | 66.458 | 319 | 88 | 4 | 1 | 301 | 1 | 318 | 1.82e-137 | 391 |
| Msa0477550 | AT2G22870.1 | 59.402 | 234 | 92 | 2 | 66 | 298 | 67 | 298 | 3.52e-103 | 304 |
| Msa0477550 | AT5G58370.1 | 38.849 | 139 | 85 | 0 | 102 | 240 | 272 | 410 | 5.24e-23 | 98.6 |
| Msa0477550 | AT5G58370.3 | 38.849 | 139 | 85 | 0 | 102 | 240 | 272 | 410 | 6.62e-23 | 98.6 |
| Msa0477550 | AT5G58370.2 | 38.849 | 139 | 85 | 0 | 102 | 240 | 272 | 410 | 6.62e-23 | 98.6 |
Find 81 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATTATGGGTTCTAGATT+TGG | 0.286082 | 3_3:+81789433 | None:intergenic |
| CTGGTTGATTTGCCTGGATA+TGG | 0.290721 | 3_3:-81788973 | Msa0477550:CDS |
| TTGTCCATCTTGAATACTTA+AGG | 0.298374 | 3_3:-81786840 | Msa0477550:three_prime_UTR |
| CCGGTTAAGGAAATAGTCTT+TGG | 0.322070 | 3_3:+81788130 | None:intergenic |
| CTTCCTGAGTTCGCTCTTGT+TGG | 0.347167 | 3_3:-81789223 | Msa0477550:CDS |
| CCAAAGACTATTTCCTTAAC+CGG | 0.351830 | 3_3:-81788130 | Msa0477550:CDS |
| GAATTTAGAATTTGAATCAT+TGG | 0.361774 | 3_3:+81786753 | None:intergenic |
| TAACCGGTCAACATTGGTTT+CGG | 0.367527 | 3_3:-81788114 | Msa0477550:CDS |
| AAACCAATGTTGACCGGTTA+AGG | 0.367559 | 3_3:+81788117 | None:intergenic |
| TTGGTGAAGATTAATGTCAT+TGG | 0.374167 | 3_3:+81787084 | None:intergenic |
| CGGCATTATGTTGTCGGAGT+TGG | 0.377561 | 3_3:-81786864 | Msa0477550:three_prime_UTR |
| TGAGCCAGTAGTTCCGGAGC+TGG | 0.377582 | 3_3:+81786899 | None:intergenic |
| CTTGTTGGTCGTTCCAATGT+TGG | 0.388640 | 3_3:-81789208 | Msa0477550:CDS |
| GGAAGATGAAATTGTGAAAA+GGG | 0.394291 | 3_3:+81789540 | None:intergenic |
| AGTGCTTGAGCCAGTAGTTC+CGG | 0.398592 | 3_3:+81786893 | None:intergenic |
| CTTGAGTATGCTGCTTGGTT+GGG | 0.404038 | 3_3:-81788047 | Msa0477550:CDS |
| TGCTTGGTTGGGTGAGAATA+AGG | 0.405086 | 3_3:-81788036 | Msa0477550:intron |
| GAAGTTGTGAGAGATGATTT+TGG | 0.405539 | 3_3:+81789460 | None:intergenic |
| TTGTATAATTTGAGCATCAT+TGG | 0.415529 | 3_3:+81789297 | None:intergenic |
| TTTGTTTAAGAGTGTGGTTA+AGG | 0.415649 | 3_3:+81789486 | None:intergenic |
| TGGTGAAGATTAATGTCATT+GGG | 0.416483 | 3_3:+81787085 | None:intergenic |
| AGGAAGATGAAATTGTGAAA+AGG | 0.418757 | 3_3:+81789539 | None:intergenic |
| TTGTTGGTCGTTCCAATGTT+GGG | 0.429746 | 3_3:-81789207 | Msa0477550:CDS |
| TCTTGAGTATGCTGCTTGGT+TGG | 0.431152 | 3_3:-81788048 | Msa0477550:CDS |
| TGTCCATCTTGAATACTTAA+GGG | 0.437140 | 3_3:-81786839 | Msa0477550:three_prime_UTR |
| TGGTACCTGGTTGATTTGCC+TGG | 0.439670 | 3_3:-81788979 | Msa0477550:CDS |
| AGTTCCGGAGCTGGGCCATA+TGG | 0.447478 | 3_3:+81786908 | None:intergenic |
| TTTCTCAATAGAGTGTGATA+TGG | 0.453137 | 3_3:-81789593 | Msa0477550:exon |
| CGCAGGAACTTAGAATGGAT+TGG | 0.455183 | 3_3:-81788163 | Msa0477550:CDS |
| GTATCTCATCACGGCCTTGA+TGG | 0.455440 | 3_3:+81786935 | None:intergenic |
| TGGCCCAGCTCCGGAACTAC+TGG | 0.455693 | 3_3:-81786903 | Msa0477550:CDS |
| TGAAATTGTGAAAAGGGAAA+AGG | 0.458557 | 3_3:+81789546 | None:intergenic |
| AGTTTGCGGCATTATGTTGT+CGG | 0.461219 | 3_3:-81786870 | Msa0477550:three_prime_UTR |
| AAATCATTGACATTATCTTC+AGG | 0.464209 | 3_3:+81787021 | None:intergenic |
| TTAGAATTTGAATCATTGGC+TGG | 0.467238 | 3_3:+81786757 | None:intergenic |
| GCAGGAACTTAGAATGGATT+GGG | 0.476083 | 3_3:-81788162 | Msa0477550:CDS |
| TGGTGGTTTGTTTAAGAGTG+TGG | 0.483129 | 3_3:+81789480 | None:intergenic |
| CATTCGAAACCGTGCCTCCA+TGG | 0.490848 | 3_3:-81786978 | Msa0477550:CDS |
| TAGGTATGCATCTGCGCCGC+AGG | 0.492153 | 3_3:-81788180 | Msa0477550:CDS |
| TCGTGAGTGACATGAGTGTT+TGG | 0.492368 | 3_3:+81789367 | None:intergenic |
| TGATGAGATACTACTCCATA+TGG | 0.496687 | 3_3:-81786923 | Msa0477550:CDS |
| ACCATCGGAAGGACAATCTT+CGG | 0.508376 | 3_3:+81789246 | None:intergenic |
| TCTTCACCAAATGTGACAAA+AGG | 0.508839 | 3_3:-81787071 | Msa0477550:CDS |
| TATCTCATCACGGCCTTGAT+GGG | 0.511175 | 3_3:+81786936 | None:intergenic |
| TGGTTGATTTGCCTGGATAT+GGG | 0.512221 | 3_3:-81788972 | Msa0477550:intron |
| TGCGCCGCAGGAACTTAGAA+TGG | 0.519575 | 3_3:-81788168 | Msa0477550:CDS |
| TACTCCATATGGCCCAGCTC+CGG | 0.520727 | 3_3:-81786912 | Msa0477550:CDS |
| AGGATAACCTTGGTAGATGA+AGG | 0.521781 | 3_3:+81789566 | None:intergenic |
| AAGCGATGATTTCCCAACAT+TGG | 0.526481 | 3_3:+81789195 | None:intergenic |
| AAGTTAAAGCGAGTTTCTTG+CGG | 0.528038 | 3_3:+81789155 | None:intergenic |
| ACTAGTAATGTCACCCATCA+AGG | 0.529857 | 3_3:-81786949 | Msa0477550:CDS |
| AACCATACATACCCATATCC+AGG | 0.530783 | 3_3:+81788961 | None:intergenic |
| AACACGCGGACGCGGTGTTG+TGG | 0.534481 | 3_3:+81789614 | None:intergenic |
| CTGGCTCAAGCACTAGTTTG+CGG | 0.535588 | 3_3:-81786884 | Msa0477550:exon |
| GACAACGCAAGAATCTTAAA+CGG | 0.544090 | 3_3:-81789346 | Msa0477550:CDS |
| AGTTAATGATAGTTGGTACC+TGG | 0.544396 | 3_3:-81788992 | Msa0477550:CDS |
| ATAGAGTCTGCGAGAAAATG+AGG | 0.546270 | 3_3:+81789519 | None:intergenic |
| TTTCCTTAACCGGTCAACAT+TGG | 0.555418 | 3_3:-81788120 | Msa0477550:CDS |
| GAGCCAGTAGTTCCGGAGCT+GGG | 0.563845 | 3_3:+81786900 | None:intergenic |
| AGTAAAACATAAAGTAACTC+AGG | 0.583673 | 3_3:+81786812 | None:intergenic |
| TTGATCTTGAGTATGCTGCT+TGG | 0.585806 | 3_3:-81788052 | Msa0477550:CDS |
| ACATTACTAGTCATGATCCA+TGG | 0.586698 | 3_3:+81786961 | None:intergenic |
| AAAAGGGAAAAGGATAACCT+TGG | 0.589953 | 3_3:+81789556 | None:intergenic |
| CATATCCAGGCAAATCAACC+AGG | 0.592486 | 3_3:+81788974 | None:intergenic |
| GCGATACGGTCGGTTTCTCA+AGG | 0.593271 | 3_3:+81789666 | None:intergenic |
| ACCGAAGATTGTCCTTCCGA+TGG | 0.599185 | 3_3:-81789247 | Msa0477550:CDS |
| CGACCAACAAGAGCGAACTC+AGG | 0.603551 | 3_3:+81789220 | None:intergenic |
| GCTTTAACTTCAAAGAAACC+TGG | 0.605040 | 3_3:-81789142 | Msa0477550:intron |
| TATTGAGAAACACGCGGACG+CGG | 0.608258 | 3_3:+81789606 | None:intergenic |
| AGACCGAAACCAATGTTGAC+CGG | 0.614690 | 3_3:+81788111 | None:intergenic |
| TGGTTGTCCTTCATCTACCA+AGG | 0.620273 | 3_3:-81789573 | Msa0477550:CDS |
| ATACCCTTAAGTATTCAAGA+TGG | 0.623327 | 3_3:+81786836 | None:intergenic |
| AGCGAACTCAGGAAGACCAT+CGG | 0.623377 | 3_3:+81789231 | None:intergenic |
| CAATCCATTCTAAGTTCCTG+CGG | 0.623495 | 3_3:+81788164 | None:intergenic |
| AGTCATGATCCATGGAGGCA+CGG | 0.640377 | 3_3:+81786969 | None:intergenic |
| TGAGTGACATGAGTGTTTGG+AGG | 0.643541 | 3_3:+81789370 | None:intergenic |
| AACTCAGGAAGACCATCGGA+AGG | 0.685453 | 3_3:+81789235 | None:intergenic |
| TATGGAGTAGTATCTCATCA+CGG | 0.704699 | 3_3:+81786926 | None:intergenic |
| ACACTCTATTGAGAAACACG+CGG | 0.774669 | 3_3:+81789600 | None:intergenic |
| TTACTAGTCATGATCCATGG+AGG | 0.783256 | 3_3:+81786964 | None:intergenic |
| GTGTTGTGGAAATATCTCAG+CGG | 0.800177 | 3_3:+81789628 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTTCGCAAATTATA+AGG | + | chr3_3:81787262-81787281 | None:intergenic | 15.0% |
| !!! | TTGTATATTTTTTTGTTTGT+AGG | - | chr3_3:81787287-81787306 | Msa0477550:intron | 15.0% |
| !!! | TGTATATTTTTTTGTTTGTA+GGG | - | chr3_3:81787288-81787307 | Msa0477550:intron | 15.0% |
| !!! | TTGTTTTATGTTACAAATTT+GGG | - | chr3_3:81787417-81787436 | Msa0477550:intron | 15.0% |
| !! | AATTTAAATATTATGAACCA+AGG | - | chr3_3:81788687-81788706 | Msa0477550:intron | 15.0% |
| !!! | CTTGTTTTATGTTACAAATT+TGG | - | chr3_3:81787416-81787435 | Msa0477550:intron | 20.0% |
| !!! | TGTTTTATGTTACAAATTTG+GGG | - | chr3_3:81787418-81787437 | Msa0477550:intron | 20.0% |
| !! | ATACTAACATGTTTGTATAT+TGG | + | chr3_3:81787464-81787483 | None:intergenic | 20.0% |
| !! | AATATACAAACATGTTAGTA+TGG | - | chr3_3:81787463-81787482 | Msa0477550:intron | 20.0% |
| !! | AGGATTCCATTATTTATAAA+AGG | - | chr3_3:81787533-81787552 | Msa0477550:intron | 20.0% |
| !! | TTCCATTATTTATAAAAGGT+TGG | - | chr3_3:81787537-81787556 | Msa0477550:intron | 20.0% |
| !!! | TTCCAACCTTTTATAAATAA+TGG | + | chr3_3:81787542-81787561 | None:intergenic | 20.0% |
| !!! | ATTTTAGTCTCATATTGTTA+AGG | - | chr3_3:81787767-81787786 | Msa0477550:intron | 20.0% |
| !! | GAAATTAACTCATAAAATGA+GGG | + | chr3_3:81787829-81787848 | None:intergenic | 20.0% |
| !! | ATATAAATTACAATCGTCAT+CGG | + | chr3_3:81788110-81788129 | None:intergenic | 20.0% |
| !!! | TTATTAAAAAGTACCATTCT+CGG | + | chr3_3:81788464-81788483 | None:intergenic | 20.0% |
| !! | TTATGATATATGAACAGATA+AGG | - | chr3_3:81788635-81788654 | Msa0477550:intron | 20.0% |
| !! | TATGATATATGAACAGATAA+GGG | - | chr3_3:81788636-81788655 | Msa0477550:intron | 20.0% |
| !!! | TCAAAATTAACTTTTCTTCA+AGG | + | chr3_3:81788723-81788742 | None:intergenic | 20.0% |
| !! | AGGAAAATTAAATTATACCA+GGG | + | chr3_3:81789217-81789236 | None:intergenic | 20.0% |
| !! | AAGGAAAATTAAATTATACC+AGG | + | chr3_3:81789218-81789237 | None:intergenic | 20.0% |
| !!! | GAATTTAGAATTTGAATCAT+TGG | + | chr3_3:81789579-81789598 | None:intergenic | 20.0% |
| !!! | AATGCATTTCATTTGATTTT+TGG | + | chr3_3:81789666-81789685 | None:intergenic | 20.0% |
| ! | TTGTATAATTTGAGCATCAT+TGG | + | chr3_3:81787035-81787054 | None:intergenic | 25.0% |
| ! | TGTAATAATAATAAGAGACC+AGG | + | chr3_3:81787208-81787227 | None:intergenic | 25.0% |
| !!! | ATTTTCGAGTTAATGATAGT+TGG | - | chr3_3:81787330-81787349 | Msa0477550:intron | 25.0% |
| ! | TAAAACAAGATTGCTTTGTA+AGG | + | chr3_3:81787405-81787424 | None:intergenic | 25.0% |
| ! | AATACATATATGCATTCCAT+TGG | + | chr3_3:81787610-81787629 | None:intergenic | 25.0% |
| ! | ATGGAATGCATATATGTATT+TGG | - | chr3_3:81787610-81787629 | Msa0477550:intron | 25.0% |
| ! | TATTTATGCCCTACAAAATT+CGG | + | chr3_3:81787706-81787725 | None:intergenic | 25.0% |
| ! | CGAAATTAACTCATAAAATG+AGG | + | chr3_3:81787830-81787849 | None:intergenic | 25.0% |
| ! | ACCTAATGAAAAGAACATAA+AGG | + | chr3_3:81788134-81788153 | None:intergenic | 25.0% |
| ! | TTCTTCATTAGAAAATCTGA+TGG | - | chr3_3:81788331-81788350 | Msa0477550:intron | 25.0% |
| ! | ACATTGTTACATTGTTTACA+GGG | + | chr3_3:81788434-81788453 | None:intergenic | 25.0% |
| !! | TTCTTATTTAAAGTAGAGGA+GGG | + | chr3_3:81788919-81788938 | None:intergenic | 25.0% |
| !! | GAAGTTCTTATTTAAAGTAG+AGG | + | chr3_3:81788923-81788942 | None:intergenic | 25.0% |
| !! | TTGGGGTTAACAATTTATTT+TGG | - | chr3_3:81789184-81789203 | Msa0477550:CDS | 25.0% |
| ! | AAAAGGAAGAAGAAAAAGAA+TGG | - | chr3_3:81789275-81789294 | Msa0477550:CDS | 25.0% |
| ! | AAATCATTGACATTATCTTC+AGG | + | chr3_3:81789311-81789330 | None:intergenic | 25.0% |
| !! | AGATAATGTCAATGATTTTC+AGG | - | chr3_3:81789313-81789332 | Msa0477550:CDS | 25.0% |
| ! | AGTAAAACATAAAGTAACTC+AGG | + | chr3_3:81789520-81789539 | None:intergenic | 25.0% |
| TTTCTCAATAGAGTGTGATA+TGG | - | chr3_3:81786736-81786755 | Msa0477550:three_prime_UTR | 30.0% | |
| TGAAATTGTGAAAAGGGAAA+AGG | + | chr3_3:81786786-81786805 | None:intergenic | 30.0% | |
| GGAAGATGAAATTGTGAAAA+GGG | + | chr3_3:81786792-81786811 | None:intergenic | 30.0% | |
| AGGAAGATGAAATTGTGAAA+AGG | + | chr3_3:81786793-81786812 | None:intergenic | 30.0% | |
| ! | TTTGTTTAAGAGTGTGGTTA+AGG | + | chr3_3:81786846-81786865 | None:intergenic | 30.0% |
| !! | GTTATTATGGGTTCTAGATT+TGG | + | chr3_3:81786899-81786918 | None:intergenic | 30.0% |
| !!! | AAGAGTTTTTCGAGTGATAA+GGG | + | chr3_3:81786935-81786954 | None:intergenic | 30.0% |
| !! | TATGGGTATGTATGGTTTTA+AGG | - | chr3_3:81787374-81787393 | Msa0477550:intron | 30.0% |
| ACAAATTTGGGGATTAACAT+TGG | - | chr3_3:81787429-81787448 | Msa0477550:intron | 30.0% | |
| TCACATTGCCAAAAATTCTT+GGG | - | chr3_3:81787584-81787603 | Msa0477550:intron | 30.0% | |
| ! | TATTGGAACCGAATTTTGTA+GGG | - | chr3_3:81787695-81787714 | Msa0477550:intron | 30.0% |
| !! | GAGTGAAATTCTAGTTCATA+TGG | - | chr3_3:81787851-81787870 | Msa0477550:intron | 30.0% |
| !! | TCTGACATTTAATTTGTCTC+TGG | - | chr3_3:81787960-81787979 | Msa0477550:intron | 30.0% |
| GTAATCATACAAACTAGCAT+TGG | + | chr3_3:81788010-81788029 | None:intergenic | 30.0% | |
| TTGTAGTTATGCTGAAGAAA+AGG | + | chr3_3:81788052-81788071 | None:intergenic | 30.0% | |
| ! | GCCTTTATGTTCTTTTCATT+AGG | - | chr3_3:81788130-81788149 | Msa0477550:CDS | 30.0% |
| !! | TCAAGATCAATCTTTTTAGC+AGG | + | chr3_3:81788267-81788286 | None:intergenic | 30.0% |
| CACATTGTTACATTGTTTAC+AGG | + | chr3_3:81788435-81788454 | None:intergenic | 30.0% | |
| GTCAACTTAAAATCAAGTGA+GGG | + | chr3_3:81788515-81788534 | None:intergenic | 30.0% | |
| CGTTTCTCTTCTATATAGAT+GGG | + | chr3_3:81788582-81788601 | None:intergenic | 30.0% | |
| TCGTTTCTCTTCTATATAGA+TGG | + | chr3_3:81788583-81788602 | None:intergenic | 30.0% | |
| ATACTGTCATAGCACATATT+AGG | - | chr3_3:81788604-81788623 | Msa0477550:intron | 30.0% | |
| TAGCACTTGATATACTCTAA+AGG | - | chr3_3:81788857-81788876 | Msa0477550:intron | 30.0% | |
| TAAAGGTCAGATCATAAAGA+AGG | - | chr3_3:81788874-81788893 | Msa0477550:intron | 30.0% | |
| ! | TCTTATTTAAAGTAGAGGAG+GGG | + | chr3_3:81788918-81788937 | None:intergenic | 30.0% |
| ! | GTTCTTATTTAAAGTAGAGG+AGG | + | chr3_3:81788920-81788939 | None:intergenic | 30.0% |
| ! | ATGTAGCACATATACACTTT+TGG | - | chr3_3:81788977-81788996 | Msa0477550:CDS | 30.0% |
| TCTACTAAGTAGTTAGACAT+CGG | + | chr3_3:81789164-81789183 | None:intergenic | 30.0% | |
| TGTCTAACTACTTAGTAGAT+TGG | - | chr3_3:81789165-81789184 | Msa0477550:CDS | 30.0% | |
| GTCTAACTACTTAGTAGATT+GGG | - | chr3_3:81789166-81789185 | Msa0477550:CDS | 30.0% | |
| TCTAACTACTTAGTAGATTG+GGG | - | chr3_3:81789167-81789186 | Msa0477550:CDS | 30.0% | |
| !!! | TTTATTTTGGTAATTGACCC+TGG | - | chr3_3:81789197-81789216 | Msa0477550:CDS | 30.0% |
| TGGTGAAGATTAATGTCATT+GGG | + | chr3_3:81789247-81789266 | None:intergenic | 30.0% | |
| TTGGTGAAGATTAATGTCAT+TGG | + | chr3_3:81789248-81789267 | None:intergenic | 30.0% | |
| TTGTCCATCTTGAATACTTA+AGG | - | chr3_3:81789489-81789508 | Msa0477550:CDS | 30.0% | |
| TGTCCATCTTGAATACTTAA+GGG | - | chr3_3:81789490-81789509 | Msa0477550:CDS | 30.0% | |
| ATACCCTTAAGTATTCAAGA+TGG | + | chr3_3:81789496-81789515 | None:intergenic | 30.0% | |
| TTAGAATTTGAATCATTGGC+TGG | + | chr3_3:81789575-81789594 | None:intergenic | 30.0% | |
| AAAAGGGAAAAGGATAACCT+TGG | + | chr3_3:81786776-81786795 | None:intergenic | 35.0% | |
| ! | GAAGTTGTGAGAGATGATTT+TGG | + | chr3_3:81786872-81786891 | None:intergenic | 35.0% |
| !!! | TCGGTTTTAGGGGTTATTAT+GGG | + | chr3_3:81786911-81786930 | None:intergenic | 35.0% |
| !!! | TTCGGTTTTAGGGGTTATTA+TGG | + | chr3_3:81786912-81786931 | None:intergenic | 35.0% |
| !!! | TTTTTCGAGTGATAAGGGTT+CGG | + | chr3_3:81786930-81786949 | None:intergenic | 35.0% |
| !!! | GAAGAGTTTTTCGAGTGATA+AGG | + | chr3_3:81786936-81786955 | None:intergenic | 35.0% |
| GACAACGCAAGAATCTTAAA+CGG | - | chr3_3:81786983-81787002 | Msa0477550:CDS | 35.0% | |
| AAGTTAAAGCGAGTTTCTTG+CGG | + | chr3_3:81787177-81787196 | None:intergenic | 35.0% | |
| ! | GCTTTAACTTCAAAGAAACC+TGG | - | chr3_3:81787187-81787206 | Msa0477550:intron | 35.0% |
| ! | AGTTAATGATAGTTGGTACC+TGG | - | chr3_3:81787337-81787356 | Msa0477550:intron | 35.0% |
| GTGTCAAACATCATAACAGT+AGG | - | chr3_3:81787513-81787532 | Msa0477550:intron | 35.0% | |
| CTCACATTGCCAAAAATTCT+TGG | - | chr3_3:81787583-81787602 | Msa0477550:intron | 35.0% | |
| AAACCCGTTTAGCATAGTAT+TGG | - | chr3_3:81787678-81787697 | Msa0477550:intron | 35.0% | |
| GTTCCAATACTATGCTAAAC+GGG | + | chr3_3:81787684-81787703 | None:intergenic | 35.0% | |
| GGTTCCAATACTATGCTAAA+CGG | + | chr3_3:81787685-81787704 | None:intergenic | 35.0% | |
| ! | GTATTGGAACCGAATTTTGT+AGG | - | chr3_3:81787694-81787713 | Msa0477550:intron | 35.0% |
| CTCATATTGTTAAGGTTCCT+TGG | - | chr3_3:81787775-81787794 | Msa0477550:intron | 35.0% | |
| CCAAAGACTATTTCCTTAAC+CGG | - | chr3_3:81788199-81788218 | Msa0477550:intron | 35.0% | |
| !! | AATCTTTTTAGCAGGAATGC+TGG | + | chr3_3:81788259-81788278 | None:intergenic | 35.0% |
| CAGGGCATGTAAAGATAAAA+TGG | + | chr3_3:81788416-81788435 | None:intergenic | 35.0% | |
| CGTCAACTTAAAATCAAGTG+AGG | + | chr3_3:81788516-81788535 | None:intergenic | 35.0% | |
| !!! | TTTTAAGTTGACGACATCTG+TGG | - | chr3_3:81788523-81788542 | Msa0477550:intron | 35.0% |
| !! | CTTCTATATAGATGGGTTGT+AGG | + | chr3_3:81788575-81788594 | None:intergenic | 35.0% |
| !! | TTTTGGTTGAAGTTGCGTTT+GGG | - | chr3_3:81788994-81789013 | Msa0477550:CDS | 35.0% |
| ATAGACACTGGTAGTAATTG+AGG | + | chr3_3:81789090-81789109 | None:intergenic | 35.0% | |
| ! | AACAATTGACTCATAGACAC+TGG | + | chr3_3:81789102-81789121 | None:intergenic | 35.0% |
| TAATGTCATTGGGATCTGAA+AGG | + | chr3_3:81789237-81789256 | None:intergenic | 35.0% | |
| TCTTCACCAAATGTGACAAA+AGG | - | chr3_3:81789258-81789277 | Msa0477550:CDS | 35.0% | |
| ! | CTTCTTCCTTTTGTCACATT+TGG | + | chr3_3:81789267-81789286 | None:intergenic | 35.0% |
| AGGAAGAAGAAAAAGAATGG+AGG | - | chr3_3:81789278-81789297 | Msa0477550:CDS | 35.0% | |
| ACATTACTAGTCATGATCCA+TGG | + | chr3_3:81789371-81789390 | None:intergenic | 35.0% | |
| TATGGAGTAGTATCTCATCA+CGG | + | chr3_3:81789406-81789425 | None:intergenic | 35.0% | |
| TGATGAGATACTACTCCATA+TGG | - | chr3_3:81789406-81789425 | Msa0477550:CDS | 35.0% | |
| GTGTTGTGGAAATATCTCAG+CGG | + | chr3_3:81786704-81786723 | None:intergenic | 40.0% | |
| ACACTCTATTGAGAAACACG+CGG | + | chr3_3:81786732-81786751 | None:intergenic | 40.0% | |
| AGGATAACCTTGGTAGATGA+AGG | + | chr3_3:81786766-81786785 | None:intergenic | 40.0% | |
| ATAGAGTCTGCGAGAAAATG+AGG | + | chr3_3:81786813-81786832 | None:intergenic | 40.0% | |
| !! | TGGTGGTTTGTTTAAGAGTG+TGG | + | chr3_3:81786852-81786871 | None:intergenic | 40.0% |
| ! | GTTGTGAGAGATGATTTTGG+TGG | + | chr3_3:81786869-81786888 | None:intergenic | 40.0% |
| !! | TGATAAGGGTTCGGTTTTAG+GGG | + | chr3_3:81786921-81786940 | None:intergenic | 40.0% |
| !! | GTGATAAGGGTTCGGTTTTA+GGG | + | chr3_3:81786922-81786941 | None:intergenic | 40.0% |
| !! | AGTGATAAGGGTTCGGTTTT+AGG | + | chr3_3:81786923-81786942 | None:intergenic | 40.0% |
| TTGTTGGTCGTTCCAATGTT+GGG | - | chr3_3:81787122-81787141 | Msa0477550:intron | 40.0% | |
| AAGCGATGATTTCCCAACAT+TGG | + | chr3_3:81787137-81787156 | None:intergenic | 40.0% | |
| !! | TGGTTGATTTGCCTGGATAT+GGG | - | chr3_3:81787357-81787376 | Msa0477550:intron | 40.0% |
| AACCATACATACCCATATCC+AGG | + | chr3_3:81787371-81787390 | None:intergenic | 40.0% | |
| ! | TCCATTGGCCCAAGAATTTT+TGG | + | chr3_3:81787595-81787614 | None:intergenic | 40.0% |
| TCGATCTCACTCTCAAAAGT+TGG | + | chr3_3:81787659-81787678 | None:intergenic | 40.0% | |
| ATGTATACATTGCACAGCCA+AGG | + | chr3_3:81787795-81787814 | None:intergenic | 40.0% | |
| GGCTTTCTACAAAACTGAAC+AGG | + | chr3_3:81788089-81788108 | None:intergenic | 40.0% | |
| CAATCCATTCTAAGTTCCTG+CGG | + | chr3_3:81788168-81788187 | None:intergenic | 40.0% | |
| ! | GCAGGAACTTAGAATGGATT+GGG | - | chr3_3:81788167-81788186 | Msa0477550:CDS | 40.0% |
| CCGGTTAAGGAAATAGTCTT+TGG | + | chr3_3:81788202-81788221 | None:intergenic | 40.0% | |
| TTTCCTTAACCGGTCAACAT+TGG | - | chr3_3:81788209-81788228 | Msa0477550:intron | 40.0% | |
| AAACCAATGTTGACCGGTTA+AGG | + | chr3_3:81788215-81788234 | None:intergenic | 40.0% | |
| !! | TAACCGGTCAACATTGGTTT+CGG | - | chr3_3:81788215-81788234 | Msa0477550:intron | 40.0% |
| TTGATCTTGAGTATGCTGCT+TGG | - | chr3_3:81788277-81788296 | Msa0477550:intron | 40.0% | |
| ! | TGGTTATGTTGTGACTTGTG+TGG | - | chr3_3:81788351-81788370 | Msa0477550:intron | 40.0% |
| AAGAATCGATAAGAGCTGAG+CGG | - | chr3_3:81788374-81788393 | Msa0477550:intron | 40.0% | |
| CAATGTGTATGTACCGAGAA+TGG | - | chr3_3:81788448-81788467 | Msa0477550:intron | 40.0% | |
| ATTATGAACCAAGGTAAGCG+TGG | - | chr3_3:81788696-81788715 | Msa0477550:intron | 40.0% | |
| CGTGGCTTCTATTTAGATAG+AGG | + | chr3_3:81788758-81788777 | None:intergenic | 40.0% | |
| AAGAGTAGTTCATCTACACC+AGG | - | chr3_3:81788815-81788834 | Msa0477550:intron | 40.0% | |
| TAAAGAAGGAAAGCCTCTAG+CGG | - | chr3_3:81788888-81788907 | Msa0477550:intron | 40.0% | |
| CATGGAAAGTGGATCACTTA+AGG | + | chr3_3:81788945-81788964 | None:intergenic | 40.0% | |
| CTACATATACTGCCTAAGCA+TGG | + | chr3_3:81788963-81788982 | None:intergenic | 40.0% | |
| !! | CTTTTGGTTGAAGTTGCGTT+TGG | - | chr3_3:81788993-81789012 | Msa0477550:CDS | 40.0% |
| TGCGAGACAATGATATGTGT+CGG | + | chr3_3:81789023-81789042 | None:intergenic | 40.0% | |
| TTAGACATCGGACATAGTAG+TGG | + | chr3_3:81789152-81789171 | None:intergenic | 40.0% | |
| !!! | GATTTTCAGGAGTTGATACG+TGG | - | chr3_3:81789326-81789345 | Msa0477550:CDS | 40.0% |
| TTACTAGTCATGATCCATGG+AGG | + | chr3_3:81789368-81789387 | None:intergenic | 40.0% | |
| ACTAGTAATGTCACCCATCA+AGG | - | chr3_3:81789380-81789399 | Msa0477550:CDS | 40.0% | |
| AGTTTGCGGCATTATGTTGT+CGG | - | chr3_3:81789459-81789478 | Msa0477550:CDS | 40.0% | |
| !! | GAGTGTTTTTGCTCGCGATA+CGG | + | chr3_3:81786680-81786699 | None:intergenic | 45.0% |
| TGGTTGTCCTTCATCTACCA+AGG | - | chr3_3:81786756-81786775 | Msa0477550:three_prime_UTR | 45.0% | |
| TGAGTGACATGAGTGTTTGG+AGG | + | chr3_3:81786962-81786981 | None:intergenic | 45.0% | |
| TCGTGAGTGACATGAGTGTT+TGG | + | chr3_3:81786965-81786984 | None:intergenic | 45.0% | |
| ACCATCGGAAGGACAATCTT+CGG | + | chr3_3:81787086-81787105 | None:intergenic | 45.0% | |
| CTTGTTGGTCGTTCCAATGT+TGG | - | chr3_3:81787121-81787140 | Msa0477550:intron | 45.0% | |
| CATATCCAGGCAAATCAACC+AGG | + | chr3_3:81787358-81787377 | None:intergenic | 45.0% | |
| !! | CTGGTTGATTTGCCTGGATA+TGG | - | chr3_3:81787356-81787375 | Msa0477550:intron | 45.0% |
| TGCCTGGATATGGGTATGTA+TGG | - | chr3_3:81787366-81787385 | Msa0477550:intron | 45.0% | |
| GCCAAAAATTCTTGGGCCAA+TGG | - | chr3_3:81787591-81787610 | Msa0477550:intron | 45.0% | |
| CGCAGGAACTTAGAATGGAT+TGG | - | chr3_3:81788166-81788185 | Msa0477550:CDS | 45.0% | |
| AGACCGAAACCAATGTTGAC+CGG | + | chr3_3:81788221-81788240 | None:intergenic | 45.0% | |
| ! | TCTTGAGTATGCTGCTTGGT+TGG | - | chr3_3:81788281-81788300 | Msa0477550:intron | 45.0% |
| ! | CTTGAGTATGCTGCTTGGTT+GGG | - | chr3_3:81788282-81788301 | Msa0477550:intron | 45.0% |
| TGCTTGGTTGGGTGAGAATA+AGG | - | chr3_3:81788293-81788312 | Msa0477550:intron | 45.0% | |
| AGTTGACGACATCTGTGGAT+CGG | - | chr3_3:81788528-81788547 | Msa0477550:intron | 45.0% | |
| CACAGGTTTGATGTTAGACG+TGG | + | chr3_3:81788776-81788795 | None:intergenic | 45.0% | |
| CAATACAGCATGAGTGACAC+AGG | + | chr3_3:81788793-81788812 | None:intergenic | 45.0% | |
| GTAGTTCATCTACACCAGGT+TGG | - | chr3_3:81788819-81788838 | Msa0477550:intron | 45.0% | |
| GTGATCCACTTTCCATGCTT+AGG | - | chr3_3:81788948-81788967 | Msa0477550:intron | 45.0% | |
| TACTGCCTAAGCATGGAAAG+TGG | + | chr3_3:81788956-81788975 | None:intergenic | 45.0% | |
| TATCTCATCACGGCCTTGAT+GGG | + | chr3_3:81789396-81789415 | None:intergenic | 45.0% | |
| !!! | AATAATTTTTAATATAGTTA+TGG | - | chr3_3:81788479-81788498 | Msa0477550:intron | 5.0% |
| ! | GTTTTTGCTCGCGATACGGT+CGG | + | chr3_3:81786676-81786695 | None:intergenic | 50.0% |
| TATTGAGAAACACGCGGACG+CGG | + | chr3_3:81786726-81786745 | None:intergenic | 50.0% | |
| ACCGAAGATTGTCCTTCCGA+TGG | - | chr3_3:81787082-81787101 | Msa0477550:CDS | 50.0% | |
| AACTCAGGAAGACCATCGGA+AGG | + | chr3_3:81787097-81787116 | None:intergenic | 50.0% | |
| AGCGAACTCAGGAAGACCAT+CGG | + | chr3_3:81787101-81787120 | None:intergenic | 50.0% | |
| CTTCCTGAGTTCGCTCTTGT+TGG | - | chr3_3:81787106-81787125 | Msa0477550:intron | 50.0% | |
| !! | TGGTACCTGGTTGATTTGCC+TGG | - | chr3_3:81787350-81787369 | Msa0477550:intron | 50.0% |
| AAAATACCCATGCTCGCGTG+TGG | + | chr3_3:81787752-81787771 | None:intergenic | 50.0% | |
| GGCTTCTAGATGAGCAAAGC+CGG | + | chr3_3:81788554-81788573 | None:intergenic | 50.0% | |
| TTCAAGGTCCACGCTTACCT+TGG | + | chr3_3:81788707-81788726 | None:intergenic | 50.0% | |
| TGCAGCTTGATTGTCCAACC+TGG | + | chr3_3:81788836-81788855 | None:intergenic | 50.0% | |
| AGTCATGATCCATGGAGGCA+CGG | + | chr3_3:81789363-81789382 | None:intergenic | 50.0% | |
| GTATCTCATCACGGCCTTGA+TGG | + | chr3_3:81789397-81789416 | None:intergenic | 50.0% | |
| AGTGCTTGAGCCAGTAGTTC+CGG | + | chr3_3:81789439-81789458 | None:intergenic | 50.0% | |
| ! | CTGGCTCAAGCACTAGTTTG+CGG | - | chr3_3:81789445-81789464 | Msa0477550:CDS | 50.0% |
| CGGCATTATGTTGTCGGAGT+TGG | - | chr3_3:81789465-81789484 | Msa0477550:CDS | 50.0% | |
| CGACCAACAAGAGCGAACTC+AGG | + | chr3_3:81787112-81787131 | None:intergenic | 55.0% | |
| TGCGCCGCAGGAACTTAGAA+TGG | - | chr3_3:81788161-81788180 | Msa0477550:CDS | 55.0% | |
| CATTCGAAACCGTGCCTCCA+TGG | - | chr3_3:81789351-81789370 | Msa0477550:CDS | 55.0% | |
| TACTCCATATGGCCCAGCTC+CGG | - | chr3_3:81789417-81789436 | Msa0477550:CDS | 55.0% | |
| CTCGCGTGTGGTGTGGGTTT+AGG | + | chr3_3:81787740-81787759 | None:intergenic | 60.0% | |
| TAGGTATGCATCTGCGCCGC+AGG | - | chr3_3:81788149-81788168 | Msa0477550:CDS | 60.0% | |
| GACGACATCTGTGGATCGGC+CGG | - | chr3_3:81788532-81788551 | Msa0477550:intron | 60.0% | |
| GAGGAGGGGTAAACCGCTAG+AGG | + | chr3_3:81788904-81788923 | None:intergenic | 60.0% | |
| AGTTCCGGAGCTGGGCCATA+TGG | + | chr3_3:81789424-81789443 | None:intergenic | 60.0% | |
| GAGCCAGTAGTTCCGGAGCT+GGG | + | chr3_3:81789432-81789451 | None:intergenic | 60.0% | |
| TGAGCCAGTAGTTCCGGAGC+TGG | + | chr3_3:81789433-81789452 | None:intergenic | 60.0% | |
| ! | AACACGCGGACGCGGTGTTG+TGG | + | chr3_3:81786718-81786737 | None:intergenic | 65.0% |
| ACCCACACCACACGCGAGCA+TGG | - | chr3_3:81787742-81787761 | Msa0477550:intron | 65.0% | |
| CCCATGCTCGCGTGTGGTGT+GGG | + | chr3_3:81787746-81787765 | None:intergenic | 65.0% | |
| CCCACACCACACGCGAGCAT+GGG | - | chr3_3:81787743-81787762 | Msa0477550:intron | 65.0% | |
| ACCCATGCTCGCGTGTGGTG+TGG | + | chr3_3:81787747-81787766 | None:intergenic | 65.0% | |
| TGGCCCAGCTCCGGAACTAC+TGG | - | chr3_3:81789426-81789445 | Msa0477550:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 81786664 | 81789687 | 81786664 | ID=Msa0477550;Name=Msa0477550 |
| chr3_3 | mRNA | 81786664 | 81789687 | 81786664 | ID=Msa0477550-mRNA-1;Parent=Msa0477550;Name=Msa0477550-mRNA-1;_AED=0.04;_eAED=0.04;_QI=91|1|1|1|1|1|4|227|301 |
| chr3_3 | exon | 81786664 | 81787109 | 81786664 | ID=Msa0477550-mRNA-1:exon:22665;Parent=Msa0477550-mRNA-1 |
| chr3_3 | exon | 81788037 | 81788199 | 81788037 | ID=Msa0477550-mRNA-1:exon:22664;Parent=Msa0477550-mRNA-1 |
| chr3_3 | exon | 81788973 | 81789042 | 81788973 | ID=Msa0477550-mRNA-1:exon:22663;Parent=Msa0477550-mRNA-1 |
| chr3_3 | exon | 81789143 | 81789687 | 81789143 | ID=Msa0477550-mRNA-1:exon:22662;Parent=Msa0477550-mRNA-1 |
| chr3_3 | five_prime_UTR | 81789597 | 81789687 | 81789597 | ID=Msa0477550-mRNA-1:five_prime_utr;Parent=Msa0477550-mRNA-1 |
| chr3_3 | CDS | 81789143 | 81789596 | 81789143 | ID=Msa0477550-mRNA-1:cds;Parent=Msa0477550-mRNA-1 |
| chr3_3 | CDS | 81788973 | 81789042 | 81788973 | ID=Msa0477550-mRNA-1:cds;Parent=Msa0477550-mRNA-1 |
| chr3_3 | CDS | 81788037 | 81788199 | 81788037 | ID=Msa0477550-mRNA-1:cds;Parent=Msa0477550-mRNA-1 |
| chr3_3 | CDS | 81786891 | 81787109 | 81786891 | ID=Msa0477550-mRNA-1:cds;Parent=Msa0477550-mRNA-1 |
| chr3_3 | three_prime_UTR | 81786664 | 81786890 | 81786664 | ID=Msa0477550-mRNA-1:three_prime_utr;Parent=Msa0477550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
