Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433670 | XP_003603604.1 | 98.007 | 301 | 6 | 0 | 1 | 301 | 1 | 301 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433670 | sp|O81004|Y2287_ARATH | 58.974 | 234 | 93 | 2 | 66 | 298 | 67 | 298 | 1.09e-100 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433670 | G7J3E8 | 98.007 | 301 | 6 | 0 | 1 | 301 | 1 | 301 | 0.0 | 610 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012380 | Msa0433670 | 0.817261 | 3.614563e-52 | -8.615850e-47 |
| Msa0019570 | Msa0433670 | -0.802386 | 5.749745e-49 | -8.615850e-47 |
| Msa0046050 | Msa0433670 | 0.832849 | 7.476154e-56 | -8.615850e-47 |
| Msa0096020 | Msa0433670 | 0.800466 | 1.422591e-48 | -8.615850e-47 |
| Msa0137010 | Msa0433670 | 0.805838 | 1.100051e-49 | -8.615850e-47 |
| Msa0140290 | Msa0433670 | 0.826004 | 3.441947e-54 | -8.615850e-47 |
| Msa0187980 | Msa0433670 | 0.812425 | 4.267447e-51 | -8.615850e-47 |
| Msa0233200 | Msa0433670 | 0.813473 | 2.514413e-51 | -8.615850e-47 |
| Msa0373220 | Msa0433670 | 0.824871 | 6.382064e-54 | -8.615850e-47 |
| Msa0378390 | Msa0433670 | -0.820088 | 8.251129e-53 | -8.615850e-47 |
| Msa0380520 | Msa0433670 | 0.810946 | 8.951606e-51 | -8.615850e-47 |
| Msa0388200 | Msa0433670 | 0.971545 | 2.477095e-133 | -8.615850e-47 |
| Msa0392050 | Msa0433670 | 0.809067 | 2.272496e-50 | -8.615850e-47 |
| Msa0404070 | Msa0433670 | 0.828720 | 7.684145e-55 | -8.615850e-47 |
| Msa0415200 | Msa0433670 | 0.801817 | 7.527038e-49 | -8.615850e-47 |
| Msa0421720 | Msa0433670 | 0.805801 | 1.120325e-49 | -8.615850e-47 |
| Msa0427740 | Msa0433670 | -0.835703 | 1.438310e-56 | -8.615850e-47 |
| Msa0427970 | Msa0433670 | -0.833841 | 4.229542e-56 | -8.615850e-47 |
| Msa0430020 | Msa0433670 | 0.811205 | 7.865555e-51 | -8.615850e-47 |
| Msa0433670 | Msa0437550 | 0.806215 | 9.165835e-50 | -8.615850e-47 |
| Msa0433670 | Msa0437790 | 0.840197 | 1.005121e-57 | -8.615850e-47 |
| Msa0433670 | Msa0468020 | 0.816330 | 5.845735e-52 | -8.615850e-47 |
| Msa0433670 | Msa0469950 | 0.811059 | 8.458666e-51 | -8.615850e-47 |
| Msa0433670 | Msa0477550 | 0.987379 | 4.788068e-170 | -8.615850e-47 |
| Msa0433670 | Msa0480430 | 0.816134 | 6.465766e-52 | -8.615850e-47 |
| Msa0433670 | Msa0485210 | 0.803374 | 3.594780e-49 | -8.615850e-47 |
| Msa0433670 | Msa0518570 | -0.836433 | 9.384726e-57 | -8.615850e-47 |
| Msa0433670 | Msa0521570 | 0.971273 | 6.632336e-133 | -8.615850e-47 |
| Msa0433670 | Msa0524960 | 0.816304 | 5.923952e-52 | -8.615850e-47 |
| Msa0433670 | Msa0552660 | 0.800317 | 1.525280e-48 | -8.615850e-47 |
| Msa0433670 | Msa0577050 | 0.813848 | 2.079375e-51 | -8.615850e-47 |
| Msa0433670 | Msa0598470 | 0.801834 | 7.468892e-49 | -8.615850e-47 |
| Msa0433670 | Msa0610360 | 0.800762 | 1.237621e-48 | -8.615850e-47 |
| Msa0433670 | Msa0610810 | 0.821961 | 3.055812e-53 | -8.615850e-47 |
| Msa0433670 | Msa0614980 | 0.815218 | 1.034921e-51 | -8.615850e-47 |
| Msa0433670 | Msa0617120 | 0.810092 | 1.368813e-50 | -8.615850e-47 |
| Msa0433670 | Msa0619390 | 0.802109 | 6.556568e-49 | -8.615850e-47 |
| Msa0433670 | Msa0621870 | 0.800299 | 1.538086e-48 | -8.615850e-47 |
| Msa0433670 | Msa0622250 | 0.810427 | 1.159237e-50 | -8.615850e-47 |
| Msa0433670 | Msa0645410 | 0.802308 | 5.968140e-49 | -8.615850e-47 |
| Msa0433670 | Msa0650890 | 0.800334 | 1.513109e-48 | -8.615850e-47 |
| Msa0433670 | Msa0651310 | 0.818603 | 1.798590e-52 | -8.615850e-47 |
| Msa0433670 | Msa0677250 | 0.801464 | 8.895064e-49 | -8.615850e-47 |
| Msa0433670 | Msa0679780 | 0.815768 | 7.806695e-52 | -8.615850e-47 |
| Msa0433670 | Msa0693400 | 0.810156 | 1.326080e-50 | -8.615850e-47 |
| Msa0433670 | Msa0693500 | 0.825659 | 4.155384e-54 | -8.615850e-47 |
| Msa0433670 | Msa0702360 | 0.801467 | 8.879623e-49 | -8.615850e-47 |
| Msa0433670 | Msa0702560 | 0.810929 | 9.024709e-51 | -8.615850e-47 |
| Msa0433670 | Msa0705810 | 0.842817 | 2.050751e-58 | -8.615850e-47 |
| Msa0433670 | Msa0713220 | 0.801017 | 1.098056e-48 | -8.615850e-47 |
| Msa0433670 | Msa0742090 | 0.810556 | 1.086901e-50 | -8.615850e-47 |
| Msa0433670 | Msa0747900 | 0.817482 | 3.223154e-52 | -8.615850e-47 |
| Msa0433670 | Msa0748330 | 0.804560 | 2.037276e-49 | -8.615850e-47 |
| Msa0433670 | Msa0748980 | 0.833769 | 4.408012e-56 | -8.615850e-47 |
| Msa0433670 | Msa0790640 | 0.845019 | 5.271396e-59 | -8.615850e-47 |
| Msa0433670 | Msa0793100 | 0.835211 | 1.914461e-56 | -8.615850e-47 |
| Msa0433670 | Msa0817100 | -0.804609 | 1.989411e-49 | -8.615850e-47 |
| Msa0433670 | Msa0825520 | 0.837507 | 4.989340e-57 | -8.615850e-47 |
| Msa0433670 | Msa0864730 | 0.843839 | 1.094844e-58 | -8.615850e-47 |
| Msa0433670 | Msa0864750 | 0.842555 | 2.407054e-58 | -8.615850e-47 |
| Msa0433670 | Msa0876030 | 0.800461 | 1.425905e-48 | -8.615850e-47 |
| Msa0433670 | Msa0879650 | 0.807044 | 6.124778e-50 | -8.615850e-47 |
| Msa0433670 | Msa0964650 | 0.809372 | 1.954468e-50 | -8.615850e-47 |
| Msa0433670 | Msa0968960 | 0.800785 | 1.224284e-48 | -8.615850e-47 |
| Msa0433670 | Msa0973890 | 0.816667 | 4.915164e-52 | -8.615850e-47 |
| Msa0433670 | Msa0975550 | 0.803851 | 2.861505e-49 | -8.615850e-47 |
| Msa0433670 | Msa0999480 | 0.806001 | 1.016967e-49 | -8.615850e-47 |
| Msa0433670 | Msa1019220 | -0.817419 | 3.330157e-52 | -8.615850e-47 |
| Msa0433670 | Msa1019230 | -0.819777 | 9.719895e-53 | -8.615850e-47 |
| Msa0433670 | Msa1036020 | -0.825145 | 5.499883e-54 | -8.615850e-47 |
| Msa0433670 | Msa1067910 | 0.834643 | 2.661435e-56 | -8.615850e-47 |
| Msa0433670 | Msa1076280 | -0.808789 | 2.606221e-50 | -8.615850e-47 |
| Msa0433670 | Msa1077940 | -0.805215 | 1.486382e-49 | -8.615850e-47 |
| Msa0433670 | Msa1078600 | 0.807609 | 4.649100e-50 | -8.615850e-47 |
| Msa0433670 | Msa1078770 | 0.800919 | 1.150017e-48 | -8.615850e-47 |
| Msa0433670 | Msa1085370 | 0.807928 | 3.977863e-50 | -8.615850e-47 |
| Msa0433670 | Msa1122550 | -0.800327 | 1.518240e-48 | -8.615850e-47 |
| Msa0433670 | Msa1124880 | -0.801096 | 1.057630e-48 | -8.615850e-47 |
| Msa0433670 | Msa1144730 | 0.809190 | 2.138783e-50 | -8.615850e-47 |
| Msa0433670 | Msa1157030 | 0.800518 | 1.388269e-48 | -8.615850e-47 |
| Msa0433670 | Msa1165810 | 0.809784 | 1.594323e-50 | -8.615850e-47 |
| Msa0433670 | Msa1177960 | 0.811361 | 7.275359e-51 | -8.615850e-47 |
| Msa0433670 | Msa1184010 | 0.812274 | 4.604121e-51 | -8.615850e-47 |
| Msa0433670 | Msa1219780 | -0.851940 | 6.398300e-61 | -8.615850e-47 |
| Msa0433670 | Msa1220680 | 0.821183 | 4.624257e-53 | -8.615850e-47 |
| Msa0433670 | Msa1222030 | -0.819677 | 1.024209e-52 | -8.615850e-47 |
| Msa0433670 | Msa1224820 | 0.814410 | 1.562737e-51 | -8.615850e-47 |
| Msa0433670 | Msa1226880 | 0.806436 | 8.231949e-50 | -8.615850e-47 |
| Msa0433670 | Msa1228350 | 0.836095 | 1.143587e-56 | -8.615850e-47 |
| Msa0433670 | Msa1228460 | 0.817569 | 3.081417e-52 | -8.615850e-47 |
| Msa0433670 | Msa1237750 | 0.811636 | 6.341690e-51 | -8.615850e-47 |
| Msa0433670 | Msa1255020 | 0.837917 | 3.916646e-57 | -8.615850e-47 |
| Msa0433670 | Msa1258100 | 0.808022 | 3.797962e-50 | -8.615850e-47 |
| Msa0433670 | Msa1263590 | 0.838334 | 3.059276e-57 | -8.615850e-47 |
| Msa0433670 | Msa1263670 | 0.834789 | 2.446320e-56 | -8.615850e-47 |
| Msa0433670 | Msa1265990 | 0.803444 | 3.475830e-49 | -8.615850e-47 |
| Msa0433670 | Msa1266710 | -0.852496 | 4.443403e-61 | -8.615850e-47 |
| Msa0433670 | Msa1295470 | 0.835515 | 1.604300e-56 | -8.615850e-47 |
| Msa0433670 | Msa1317240 | 0.800677 | 1.288187e-48 | -8.615850e-47 |
| Msa0433670 | Msa1349810 | 0.828406 | 9.153280e-55 | -8.615850e-47 |
| Msa0433670 | Msa1356730 | 0.804614 | 1.984668e-49 | -8.615850e-47 |
| Msa0433670 | Msa1363690 | -0.850728 | 1.407573e-60 | -8.615850e-47 |
| Msa0433670 | Msa1369180 | 0.840745 | 7.225500e-58 | -8.615850e-47 |
| Msa0433670 | Msa1373390 | 0.843382 | 1.450484e-58 | -8.615850e-47 |
| Msa0433670 | Msa1375780 | 0.804389 | 2.211873e-49 | -8.615850e-47 |
| Msa0433670 | Msa1378950 | -0.801571 | 8.454748e-49 | -8.615850e-47 |
| Msa0433670 | Msa1384620 | 0.834675 | 2.613355e-56 | -8.615850e-47 |
| Msa0433670 | Msa1387520 | 0.971350 | 5.026804e-133 | -8.615850e-47 |
| Msa0433670 | Msa1388610 | 0.810022 | 1.417093e-50 | -8.615850e-47 |
| Msa0433670 | Msa1395580 | 0.834827 | 2.392512e-56 | -8.615850e-47 |
| Msa0433670 | Msa1396550 | -0.847948 | 8.368880e-60 | -8.615850e-47 |
| Msa0433670 | Msa1404690 | 0.800375 | 1.484553e-48 | -8.615850e-47 |
| Msa0433670 | Msa1405380 | 0.824116 | 9.606576e-54 | -8.615850e-47 |
| Msa0433670 | Msa1407210 | -0.850877 | 1.278305e-60 | -8.615850e-47 |
| Msa0433670 | Msa1420600 | 0.811297 | 7.512832e-51 | -8.615850e-47 |
| Msa0433670 | Msa1423660 | -0.803420 | 3.515746e-49 | -8.615850e-47 |
| Msa0433670 | Msa1425540 | 0.806891 | 6.598953e-50 | -8.615850e-47 |
| Msa0433670 | Msa1427600 | 0.810506 | 1.114394e-50 | -8.615850e-47 |
| Msa0433670 | Msa1430630 | 0.811237 | 7.740125e-51 | -8.615850e-47 |
| Msa0433670 | Msa1439070 | 0.803398 | 3.553116e-49 | -8.615850e-47 |
| Msa0433670 | Msa1445780 | -0.802828 | 4.660910e-49 | -8.615850e-47 |
| Msa0433670 | Msa1453540 | 0.812010 | 5.255605e-51 | -8.615850e-47 |
| Msa0433670 | Msa1462600 | 0.825931 | 3.581419e-54 | -8.615850e-47 |
| Msa0253160 | Msa0433670 | 0.818943 | 1.505481e-52 | -8.615850e-47 |
| Msa0291940 | Msa0433670 | 0.824665 | 7.138098e-54 | -8.615850e-47 |
| Msa0297950 | Msa0433670 | -0.816564 | 5.182477e-52 | -8.615850e-47 |
| Msa0303440 | Msa0433670 | 0.818496 | 1.901814e-52 | -8.615850e-47 |
| Msa0303500 | Msa0433670 | 0.820569 | 6.400403e-53 | -8.615850e-47 |
| Msa0344680 | Msa0433670 | 0.810065 | 1.387375e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433670 | MtrunA17_Chr3g0139461 | 98.007 | 301 | 6 | 0 | 1 | 301 | 1 | 301 | 0.0 | 610 |
| Msa0433670 | MtrunA17_Chr4g0047261 | 61.111 | 234 | 88 | 2 | 66 | 298 | 64 | 295 | 1.13e-102 | 302 |
| Msa0433670 | MtrunA17_Chr3g0107041 | 38.710 | 155 | 90 | 1 | 86 | 240 | 461 | 610 | 3.01e-22 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433670 | AT5G11480.1 | 66.144 | 319 | 89 | 4 | 1 | 301 | 1 | 318 | 3.98e-136 | 388 |
| Msa0433670 | AT2G22870.1 | 58.974 | 234 | 93 | 2 | 66 | 298 | 67 | 298 | 1.10e-101 | 300 |
| Msa0433670 | AT5G58370.1 | 38.312 | 154 | 90 | 1 | 87 | 240 | 262 | 410 | 5.08e-22 | 95.9 |
| Msa0433670 | AT5G58370.3 | 38.312 | 154 | 90 | 1 | 87 | 240 | 262 | 410 | 5.87e-22 | 95.9 |
| Msa0433670 | AT5G58370.2 | 38.312 | 154 | 90 | 1 | 87 | 240 | 262 | 410 | 5.87e-22 | 95.9 |
Find 80 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATTATGGGTTCTAGATT+TGG | 0.286082 | 3_2:+86174092 | None:intergenic |
| CTGGTTGATTTGCCTGGATA+TGG | 0.290721 | 3_2:-86173632 | Msa0433670:CDS |
| TTGTCCATCTTGAATACTTA+AGG | 0.298374 | 3_2:-86171502 | Msa0433670:three_prime_UTR |
| CCGGTTAAGGAAATAGTCTT+TGG | 0.322070 | 3_2:+86172786 | None:intergenic |
| CTTCTTGAGTTCGCTCTTGT+TGG | 0.332816 | 3_2:-86173882 | Msa0433670:CDS |
| CCAAAGACTATTTCCTTAAC+CGG | 0.351830 | 3_2:-86172786 | Msa0433670:CDS |
| GAATTTAGAATTTGAATCAT+TGG | 0.361774 | 3_2:+86171415 | None:intergenic |
| TAACCGGTCAACATTGGTTT+CGG | 0.367527 | 3_2:-86172770 | Msa0433670:CDS |
| AAACCAATGTTGACCGGTTA+AGG | 0.367559 | 3_2:+86172773 | None:intergenic |
| TTGGTGAAGATTAATGTCAT+TGG | 0.374167 | 3_2:+86171746 | None:intergenic |
| CGGCATTATGTTGTCGGAGT+TGG | 0.377561 | 3_2:-86171526 | Msa0433670:three_prime_UTR |
| TGAGCCAGTAGTTCCGGAGC+TGG | 0.377582 | 3_2:+86171561 | None:intergenic |
| CTTGTTGGTCGTTCCAATGT+TGG | 0.388640 | 3_2:-86173867 | Msa0433670:CDS |
| GGAAGATGAAATTGTGAAAA+GGG | 0.394291 | 3_2:+86174199 | None:intergenic |
| AGTGCTTGAGCCAGTAGTTC+CGG | 0.398592 | 3_2:+86171555 | None:intergenic |
| CTTGAGTATGCTGCTTGGTT+GGG | 0.404038 | 3_2:-86172703 | Msa0433670:CDS |
| TGCTTGGTTGGGTGAGAATA+AGG | 0.405086 | 3_2:-86172692 | Msa0433670:intron |
| GAAGTTGTGAGAGATGATTT+TGG | 0.405539 | 3_2:+86174119 | None:intergenic |
| TTGTATAATTTGAGCATCAT+TGG | 0.415529 | 3_2:+86173956 | None:intergenic |
| TTTGTTTAAGAGTGTGGTTA+AGG | 0.415649 | 3_2:+86174145 | None:intergenic |
| TGGTGAAGATTAATGTCATT+GGG | 0.416483 | 3_2:+86171747 | None:intergenic |
| AGGAAGATGAAATTGTGAAA+AGG | 0.418757 | 3_2:+86174198 | None:intergenic |
| TTGTTGGTCGTTCCAATGTT+GGG | 0.429746 | 3_2:-86173866 | Msa0433670:CDS |
| TCTTGAGTATGCTGCTTGGT+TGG | 0.431152 | 3_2:-86172704 | Msa0433670:CDS |
| TGTCCATCTTGAATACTTAA+GGG | 0.437140 | 3_2:-86171501 | Msa0433670:three_prime_UTR |
| TGGTACCTGGTTGATTTGCC+TGG | 0.439670 | 3_2:-86173638 | Msa0433670:CDS |
| AGTTCCGGAGCTGGGCCATA+TGG | 0.447478 | 3_2:+86171570 | None:intergenic |
| TTTCTCAATAGAGTGTGATA+TGG | 0.453137 | 3_2:-86174252 | Msa0433670:exon |
| CGCAGGAACTTAGAATGGAT+TGG | 0.455183 | 3_2:-86172819 | Msa0433670:CDS |
| GTATCTCATCACGGCCTTGA+TGG | 0.455440 | 3_2:+86171597 | None:intergenic |
| TGGCCCAGCTCCGGAACTAC+TGG | 0.455693 | 3_2:-86171565 | Msa0433670:CDS |
| TGAAATTGTGAAAAGGGAAA+AGG | 0.458557 | 3_2:+86174205 | None:intergenic |
| AGTTTGCGGCATTATGTTGT+CGG | 0.461219 | 3_2:-86171532 | Msa0433670:three_prime_UTR |
| AAATCATTGACATTATCTTC+AGG | 0.464209 | 3_2:+86171683 | None:intergenic |
| TTAGAATTTGAATCATTGGC+TGG | 0.467238 | 3_2:+86171419 | None:intergenic |
| GCAGGAACTTAGAATGGATT+GGG | 0.476083 | 3_2:-86172818 | Msa0433670:CDS |
| TGGTGGTTTGTTTAAGAGTG+TGG | 0.483129 | 3_2:+86174139 | None:intergenic |
| CATTCGAAACCGTGCCTCCA+TGG | 0.490848 | 3_2:-86171640 | Msa0433670:CDS |
| TAGGTATGCATCTGCGCCGC+AGG | 0.492153 | 3_2:-86172836 | Msa0433670:CDS |
| TCGTGAGTGACATGAGTGTT+TGG | 0.492368 | 3_2:+86174026 | None:intergenic |
| TGATGAGATACTACTCCATA+TGG | 0.496687 | 3_2:-86171585 | Msa0433670:CDS |
| ACCATCGGAAGGACAATCTT+CGG | 0.508376 | 3_2:+86173905 | None:intergenic |
| TCTTCACCAAATGTGACAAA+AGG | 0.508839 | 3_2:-86171733 | Msa0433670:CDS |
| TATCTCATCACGGCCTTGAT+GGG | 0.511175 | 3_2:+86171598 | None:intergenic |
| TGGTTGATTTGCCTGGATAT+GGG | 0.512221 | 3_2:-86173631 | Msa0433670:intron |
| TGCGCCGCAGGAACTTAGAA+TGG | 0.519575 | 3_2:-86172824 | Msa0433670:CDS |
| TACTCCATATGGCCCAGCTC+CGG | 0.520727 | 3_2:-86171574 | Msa0433670:CDS |
| AGGATAACCTTGGTAGATGA+AGG | 0.521781 | 3_2:+86174225 | None:intergenic |
| AAGCGATGATTTCCCAACAT+TGG | 0.526481 | 3_2:+86173854 | None:intergenic |
| AAGTTAAAGCGAGTTTCTTG+CGG | 0.528038 | 3_2:+86173814 | None:intergenic |
| ACTAGTAATGTCACCCATCA+AGG | 0.529857 | 3_2:-86171611 | Msa0433670:CDS |
| AACCATACATACCCATATCC+AGG | 0.530783 | 3_2:+86173620 | None:intergenic |
| AACACGCGGACGCGGTGTTG+TGG | 0.534481 | 3_2:+86174273 | None:intergenic |
| CTGGCTCAAGCACTAGTTTG+CGG | 0.535588 | 3_2:-86171546 | Msa0433670:exon |
| GACAACGCAAGAATCTTAAA+CGG | 0.544090 | 3_2:-86174005 | Msa0433670:CDS |
| AGTTAATGATAGTTGGTACC+TGG | 0.544396 | 3_2:-86173651 | Msa0433670:CDS |
| ATAGAGTCTGCGAGAAAATG+AGG | 0.546270 | 3_2:+86174178 | None:intergenic |
| TTTCCTTAACCGGTCAACAT+TGG | 0.555418 | 3_2:-86172776 | Msa0433670:CDS |
| GAGCCAGTAGTTCCGGAGCT+GGG | 0.563845 | 3_2:+86171562 | None:intergenic |
| AGTAAAACATAAAGTAACTC+AGG | 0.583673 | 3_2:+86171474 | None:intergenic |
| TTGATCTTGAGTATGCTGCT+TGG | 0.585806 | 3_2:-86172708 | Msa0433670:CDS |
| ACATTACTAGTCATGATCCA+TGG | 0.586698 | 3_2:+86171623 | None:intergenic |
| AAAAGGGAAAAGGATAACCT+TGG | 0.589953 | 3_2:+86174215 | None:intergenic |
| CATATCCAGGCAAATCAACC+AGG | 0.592486 | 3_2:+86173633 | None:intergenic |
| GCGATACGGTCGGTTTCTCA+AGG | 0.593271 | 3_2:+86174325 | None:intergenic |
| AGCGAACTCAAGAAGACCAT+CGG | 0.594655 | 3_2:+86173890 | None:intergenic |
| ACCGAAGATTGTCCTTCCGA+TGG | 0.599185 | 3_2:-86173906 | Msa0433670:CDS |
| GCTTTAACTTCAAAGAAACC+TGG | 0.605040 | 3_2:-86173801 | Msa0433670:intron |
| TATTGAGAAACACGCGGACG+CGG | 0.608258 | 3_2:+86174265 | None:intergenic |
| AGACCGAAACCAATGTTGAC+CGG | 0.614690 | 3_2:+86172767 | None:intergenic |
| TGGTTGTCCTTCATCTACCA+AGG | 0.620273 | 3_2:-86174232 | Msa0433670:CDS |
| ATACCCTTAAGTATTCAAGA+TGG | 0.623327 | 3_2:+86171498 | None:intergenic |
| CAATCCATTCTAAGTTCCTG+CGG | 0.623495 | 3_2:+86172820 | None:intergenic |
| AGTCATGATCCATGGAGGCA+CGG | 0.640377 | 3_2:+86171631 | None:intergenic |
| TGAGTGACATGAGTGTTTGG+AGG | 0.643541 | 3_2:+86174029 | None:intergenic |
| AACTCAAGAAGACCATCGGA+AGG | 0.685453 | 3_2:+86173894 | None:intergenic |
| TATGGAGTAGTATCTCATCA+CGG | 0.704699 | 3_2:+86171588 | None:intergenic |
| ACACTCTATTGAGAAACACG+CGG | 0.774669 | 3_2:+86174259 | None:intergenic |
| TTACTAGTCATGATCCATGG+AGG | 0.783256 | 3_2:+86171626 | None:intergenic |
| GTGTTGTGGAAATATCTCAG+CGG | 0.800177 | 3_2:+86174287 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTTCGCAAATTATA+AGG | + | chr3_2:86171924-86171943 | None:intergenic | 15.0% |
| !!! | TTGTATATTTTTTTGTTTGT+AGG | - | chr3_2:86171949-86171968 | Msa0433670:intron | 15.0% |
| !!! | TGTATATTTTTTTGTTTGTA+GGG | - | chr3_2:86171950-86171969 | Msa0433670:intron | 15.0% |
| !!! | TTGTTTTATGTTACAAATTT+GGG | - | chr3_2:86172079-86172098 | Msa0433670:intron | 15.0% |
| !! | TTATTAAAAAATACCATTCT+CGG | + | chr3_2:86173129-86173148 | None:intergenic | 15.0% |
| !! | AATTTAAATATTATGAACCA+AGG | - | chr3_2:86173352-86173371 | Msa0433670:intron | 15.0% |
| !!! | CTTGTTTTATGTTACAAATT+TGG | - | chr3_2:86172078-86172097 | Msa0433670:intron | 20.0% |
| !!! | TGTTTTATGTTACAAATTTG+GGG | - | chr3_2:86172080-86172099 | Msa0433670:intron | 20.0% |
| !! | ATACTAACATGTTTGTATAT+TGG | + | chr3_2:86172126-86172145 | None:intergenic | 20.0% |
| !! | AATATACAAACATGTTAGTA+TGG | - | chr3_2:86172125-86172144 | Msa0433670:intron | 20.0% |
| !! | AGGATTCCATTATTTATAAA+AGG | - | chr3_2:86172195-86172214 | Msa0433670:intron | 20.0% |
| !! | TTCCATTATTTATAAAAGGT+TGG | - | chr3_2:86172199-86172218 | Msa0433670:intron | 20.0% |
| !!! | TTCCAACCTTTTATAAATAA+TGG | + | chr3_2:86172204-86172223 | None:intergenic | 20.0% |
| !!! | ATTTTAGTCTCATATTGTTA+AGG | - | chr3_2:86172429-86172448 | Msa0433670:intron | 20.0% |
| !! | GAAATTAACTCATAAAATGA+GGG | + | chr3_2:86172491-86172510 | None:intergenic | 20.0% |
| !! | ATATAAATTACAATCGTCAT+CGG | + | chr3_2:86172775-86172794 | None:intergenic | 20.0% |
| !! | TTATGATATATGAACAGATA+AGG | - | chr3_2:86173300-86173319 | Msa0433670:intron | 20.0% |
| !! | TATGATATATGAACAGATAA+GGG | - | chr3_2:86173301-86173320 | Msa0433670:intron | 20.0% |
| !!! | TCAAAATTAACTTTTCTTCA+AGG | + | chr3_2:86173388-86173407 | None:intergenic | 20.0% |
| !! | AGGAAAATTAAATTATACCA+GGG | + | chr3_2:86173876-86173895 | None:intergenic | 20.0% |
| !! | AAGGAAAATTAAATTATACC+AGG | + | chr3_2:86173877-86173896 | None:intergenic | 20.0% |
| !!! | GAATTTAGAATTTGAATCAT+TGG | + | chr3_2:86174238-86174257 | None:intergenic | 20.0% |
| !!! | AATGCATTTCATTTGATTTT+TGG | + | chr3_2:86174325-86174344 | None:intergenic | 20.0% |
| ! | TTGTATAATTTGAGCATCAT+TGG | + | chr3_2:86171697-86171716 | None:intergenic | 25.0% |
| ! | TGTAATAATAATAAGAGACC+AGG | + | chr3_2:86171870-86171889 | None:intergenic | 25.0% |
| !!! | ATTTTCGAGTTAATGATAGT+TGG | - | chr3_2:86171992-86172011 | Msa0433670:intron | 25.0% |
| ! | TAAAACAAGATTGCTTTGTA+AGG | + | chr3_2:86172067-86172086 | None:intergenic | 25.0% |
| ! | AATACATATATGCATTCCAT+TGG | + | chr3_2:86172272-86172291 | None:intergenic | 25.0% |
| ! | ATGGAATGCATATATGTATT+TGG | - | chr3_2:86172272-86172291 | Msa0433670:intron | 25.0% |
| ! | TATTTATGCCCTACAAAATT+CGG | + | chr3_2:86172368-86172387 | None:intergenic | 25.0% |
| ! | CGAAATTAACTCATAAAATG+AGG | + | chr3_2:86172492-86172511 | None:intergenic | 25.0% |
| ! | ACCTAATGAAAAGAACATAA+AGG | + | chr3_2:86172799-86172818 | None:intergenic | 25.0% |
| ! | TTCTTCATTAGAAAATCTGA+TGG | - | chr3_2:86172996-86173015 | Msa0433670:intron | 25.0% |
| ! | ACATTGTTACATTGTTTACA+GGG | + | chr3_2:86173099-86173118 | None:intergenic | 25.0% |
| !! | TTCTTATTTAAAGTAGAGGA+GGG | + | chr3_2:86173584-86173603 | None:intergenic | 25.0% |
| !! | GAAGTTCTTATTTAAAGTAG+AGG | + | chr3_2:86173588-86173607 | None:intergenic | 25.0% |
| !! | TTGGGGTTAACAATTTATTT+TGG | - | chr3_2:86173843-86173862 | Msa0433670:CDS | 25.0% |
| ! | AAAAGGAAGAAGAAAAAGAA+TGG | - | chr3_2:86173934-86173953 | Msa0433670:CDS | 25.0% |
| ! | AAATCATTGACATTATCTTC+AGG | + | chr3_2:86173970-86173989 | None:intergenic | 25.0% |
| !! | AGATAATGTCAATGATTTTC+AGG | - | chr3_2:86173972-86173991 | Msa0433670:CDS | 25.0% |
| ! | AGTAAAACATAAAGTAACTC+AGG | + | chr3_2:86174179-86174198 | None:intergenic | 25.0% |
| TTTCTCAATAGAGTGTGATA+TGG | - | chr3_2:86171398-86171417 | Msa0433670:three_prime_UTR | 30.0% | |
| TGAAATTGTGAAAAGGGAAA+AGG | + | chr3_2:86171448-86171467 | None:intergenic | 30.0% | |
| GGAAGATGAAATTGTGAAAA+GGG | + | chr3_2:86171454-86171473 | None:intergenic | 30.0% | |
| AGGAAGATGAAATTGTGAAA+AGG | + | chr3_2:86171455-86171474 | None:intergenic | 30.0% | |
| ! | TTTGTTTAAGAGTGTGGTTA+AGG | + | chr3_2:86171508-86171527 | None:intergenic | 30.0% |
| !! | GTTATTATGGGTTCTAGATT+TGG | + | chr3_2:86171561-86171580 | None:intergenic | 30.0% |
| !!! | AAGAGTTTTTCGAGTGATAA+GGG | + | chr3_2:86171597-86171616 | None:intergenic | 30.0% |
| !! | TATGGGTATGTATGGTTTTA+AGG | - | chr3_2:86172036-86172055 | Msa0433670:intron | 30.0% |
| ACAAATTTGGGGATTAACAT+TGG | - | chr3_2:86172091-86172110 | Msa0433670:intron | 30.0% | |
| TCACATTGCCAAAAATTCTT+GGG | - | chr3_2:86172246-86172265 | Msa0433670:intron | 30.0% | |
| ! | TATTGGAACCGAATTTTGTA+GGG | - | chr3_2:86172357-86172376 | Msa0433670:intron | 30.0% |
| !! | GAGTGAAATTCTAGTTCATA+TGG | - | chr3_2:86172513-86172532 | Msa0433670:intron | 30.0% |
| !! | TCTGACATTTAATTTGTCTC+TGG | - | chr3_2:86172626-86172645 | Msa0433670:intron | 30.0% |
| GTAATCATACAAACTAGCAT+TGG | + | chr3_2:86172676-86172695 | None:intergenic | 30.0% | |
| TTGTAGTTATGCTGAAGAAA+AGG | + | chr3_2:86172717-86172736 | None:intergenic | 30.0% | |
| ! | GCCTTTATGTTCTTTTCATT+AGG | - | chr3_2:86172795-86172814 | Msa0433670:CDS | 30.0% |
| !! | TCAAGATCAATCTTTTTAGC+AGG | + | chr3_2:86172932-86172951 | None:intergenic | 30.0% |
| CACATTGTTACATTGTTTAC+AGG | + | chr3_2:86173100-86173119 | None:intergenic | 30.0% | |
| GTCAACTTAAAATCAAGTGA+GGG | + | chr3_2:86173180-86173199 | None:intergenic | 30.0% | |
| CGTTTCTCTTCTATATAGAT+GGG | + | chr3_2:86173247-86173266 | None:intergenic | 30.0% | |
| TCGTTTCTCTTCTATATAGA+TGG | + | chr3_2:86173248-86173267 | None:intergenic | 30.0% | |
| ATACTGTCATAGCACATATT+AGG | - | chr3_2:86173269-86173288 | Msa0433670:intron | 30.0% | |
| TAGCACTTGATATACTCTAA+AGG | - | chr3_2:86173522-86173541 | Msa0433670:intron | 30.0% | |
| TAAAGGTCAGATCATAAAGA+AGG | - | chr3_2:86173539-86173558 | Msa0433670:intron | 30.0% | |
| ! | TCTTATTTAAAGTAGAGGAG+GGG | + | chr3_2:86173583-86173602 | None:intergenic | 30.0% |
| ! | GTTCTTATTTAAAGTAGAGG+AGG | + | chr3_2:86173585-86173604 | None:intergenic | 30.0% |
| ! | ATGTAGCACATATACACTTT+TGG | - | chr3_2:86173642-86173661 | Msa0433670:CDS | 30.0% |
| !! | TTTTGGTTGAAGTTGTGTTT+GGG | - | chr3_2:86173659-86173678 | Msa0433670:CDS | 30.0% |
| TCTACTAAGTAGTTAGACAT+CGG | + | chr3_2:86173823-86173842 | None:intergenic | 30.0% | |
| TGTCTAACTACTTAGTAGAT+TGG | - | chr3_2:86173824-86173843 | Msa0433670:CDS | 30.0% | |
| GTCTAACTACTTAGTAGATT+GGG | - | chr3_2:86173825-86173844 | Msa0433670:CDS | 30.0% | |
| TCTAACTACTTAGTAGATTG+GGG | - | chr3_2:86173826-86173845 | Msa0433670:CDS | 30.0% | |
| !!! | TTTATTTTGGTAATTGACCC+TGG | - | chr3_2:86173856-86173875 | Msa0433670:CDS | 30.0% |
| TGGTGAAGATTAATGTCATT+GGG | + | chr3_2:86173906-86173925 | None:intergenic | 30.0% | |
| TTGGTGAAGATTAATGTCAT+TGG | + | chr3_2:86173907-86173926 | None:intergenic | 30.0% | |
| TTGTCCATCTTGAATACTTA+AGG | - | chr3_2:86174148-86174167 | Msa0433670:CDS | 30.0% | |
| TGTCCATCTTGAATACTTAA+GGG | - | chr3_2:86174149-86174168 | Msa0433670:CDS | 30.0% | |
| ATACCCTTAAGTATTCAAGA+TGG | + | chr3_2:86174155-86174174 | None:intergenic | 30.0% | |
| TTAGAATTTGAATCATTGGC+TGG | + | chr3_2:86174234-86174253 | None:intergenic | 30.0% | |
| AAAAGGGAAAAGGATAACCT+TGG | + | chr3_2:86171438-86171457 | None:intergenic | 35.0% | |
| ! | GAAGTTGTGAGAGATGATTT+TGG | + | chr3_2:86171534-86171553 | None:intergenic | 35.0% |
| !!! | TCGGTTTTAGGGGTTATTAT+GGG | + | chr3_2:86171573-86171592 | None:intergenic | 35.0% |
| !!! | TTCGGTTTTAGGGGTTATTA+TGG | + | chr3_2:86171574-86171593 | None:intergenic | 35.0% |
| !!! | TTTTTCGAGTGATAAGGGTT+CGG | + | chr3_2:86171592-86171611 | None:intergenic | 35.0% |
| !!! | GAAGAGTTTTTCGAGTGATA+AGG | + | chr3_2:86171598-86171617 | None:intergenic | 35.0% |
| GACAACGCAAGAATCTTAAA+CGG | - | chr3_2:86171645-86171664 | Msa0433670:CDS | 35.0% | |
| AAGTTAAAGCGAGTTTCTTG+CGG | + | chr3_2:86171839-86171858 | None:intergenic | 35.0% | |
| ! | GCTTTAACTTCAAAGAAACC+TGG | - | chr3_2:86171849-86171868 | Msa0433670:intron | 35.0% |
| ! | AGTTAATGATAGTTGGTACC+TGG | - | chr3_2:86171999-86172018 | Msa0433670:intron | 35.0% |
| GTGTCAAACATCATAACAGT+AGG | - | chr3_2:86172175-86172194 | Msa0433670:intron | 35.0% | |
| CTCACATTGCCAAAAATTCT+TGG | - | chr3_2:86172245-86172264 | Msa0433670:intron | 35.0% | |
| AAACCCGTTTAGCATAGTAT+TGG | - | chr3_2:86172340-86172359 | Msa0433670:intron | 35.0% | |
| GTTCCAATACTATGCTAAAC+GGG | + | chr3_2:86172346-86172365 | None:intergenic | 35.0% | |
| GGTTCCAATACTATGCTAAA+CGG | + | chr3_2:86172347-86172366 | None:intergenic | 35.0% | |
| ! | GTATTGGAACCGAATTTTGT+AGG | - | chr3_2:86172356-86172375 | Msa0433670:intron | 35.0% |
| CTCATATTGTTAAGGTTCCT+TGG | - | chr3_2:86172437-86172456 | Msa0433670:intron | 35.0% | |
| CCAAAGACTATTTCCTTAAC+CGG | - | chr3_2:86172864-86172883 | Msa0433670:intron | 35.0% | |
| !! | AATCTTTTTAGCAGGAATGC+TGG | + | chr3_2:86172924-86172943 | None:intergenic | 35.0% |
| CAGGGCATGTAAAGATAAAA+TGG | + | chr3_2:86173081-86173100 | None:intergenic | 35.0% | |
| CGTCAACTTAAAATCAAGTG+AGG | + | chr3_2:86173181-86173200 | None:intergenic | 35.0% | |
| !!! | TTTTAAGTTGACGACATCTG+TGG | - | chr3_2:86173188-86173207 | Msa0433670:intron | 35.0% |
| !! | CTTCTATATAGATGGGTTGT+AGG | + | chr3_2:86173240-86173259 | None:intergenic | 35.0% |
| !! | CTTTTGGTTGAAGTTGTGTT+TGG | - | chr3_2:86173658-86173677 | Msa0433670:CDS | 35.0% |
| ATAGACACTGGTAGTAATTG+AGG | + | chr3_2:86173749-86173768 | None:intergenic | 35.0% | |
| ! | AACAATTGACTCATAGACAC+TGG | + | chr3_2:86173761-86173780 | None:intergenic | 35.0% |
| TAATGTCATTGGGATCTGAA+AGG | + | chr3_2:86173896-86173915 | None:intergenic | 35.0% | |
| TCTTCACCAAATGTGACAAA+AGG | - | chr3_2:86173917-86173936 | Msa0433670:CDS | 35.0% | |
| ! | CTTCTTCCTTTTGTCACATT+TGG | + | chr3_2:86173926-86173945 | None:intergenic | 35.0% |
| AGGAAGAAGAAAAAGAATGG+AGG | - | chr3_2:86173937-86173956 | Msa0433670:CDS | 35.0% | |
| ACATTACTAGTCATGATCCA+TGG | + | chr3_2:86174030-86174049 | None:intergenic | 35.0% | |
| TATGGAGTAGTATCTCATCA+CGG | + | chr3_2:86174065-86174084 | None:intergenic | 35.0% | |
| TGATGAGATACTACTCCATA+TGG | - | chr3_2:86174065-86174084 | Msa0433670:CDS | 35.0% | |
| GTGTTGTGGAAATATCTCAG+CGG | + | chr3_2:86171366-86171385 | None:intergenic | 40.0% | |
| ACACTCTATTGAGAAACACG+CGG | + | chr3_2:86171394-86171413 | None:intergenic | 40.0% | |
| AGGATAACCTTGGTAGATGA+AGG | + | chr3_2:86171428-86171447 | None:intergenic | 40.0% | |
| ATAGAGTCTGCGAGAAAATG+AGG | + | chr3_2:86171475-86171494 | None:intergenic | 40.0% | |
| !! | TGGTGGTTTGTTTAAGAGTG+TGG | + | chr3_2:86171514-86171533 | None:intergenic | 40.0% |
| ! | GTTGTGAGAGATGATTTTGG+TGG | + | chr3_2:86171531-86171550 | None:intergenic | 40.0% |
| !! | TGATAAGGGTTCGGTTTTAG+GGG | + | chr3_2:86171583-86171602 | None:intergenic | 40.0% |
| !! | GTGATAAGGGTTCGGTTTTA+GGG | + | chr3_2:86171584-86171603 | None:intergenic | 40.0% |
| !! | AGTGATAAGGGTTCGGTTTT+AGG | + | chr3_2:86171585-86171604 | None:intergenic | 40.0% |
| TTGTTGGTCGTTCCAATGTT+GGG | - | chr3_2:86171784-86171803 | Msa0433670:intron | 40.0% | |
| AAGCGATGATTTCCCAACAT+TGG | + | chr3_2:86171799-86171818 | None:intergenic | 40.0% | |
| !! | TGGTTGATTTGCCTGGATAT+GGG | - | chr3_2:86172019-86172038 | Msa0433670:intron | 40.0% |
| AACCATACATACCCATATCC+AGG | + | chr3_2:86172033-86172052 | None:intergenic | 40.0% | |
| ! | TCCATTGGCCCAAGAATTTT+TGG | + | chr3_2:86172257-86172276 | None:intergenic | 40.0% |
| TCGATCTCACTCTCAAAAGT+TGG | + | chr3_2:86172321-86172340 | None:intergenic | 40.0% | |
| ATGTATACATTGCACAGCCA+AGG | + | chr3_2:86172457-86172476 | None:intergenic | 40.0% | |
| GGCTTTCTACAAAACTGAAC+AGG | + | chr3_2:86172754-86172773 | None:intergenic | 40.0% | |
| CAATCCATTCTAAGTTCCTG+CGG | + | chr3_2:86172833-86172852 | None:intergenic | 40.0% | |
| ! | GCAGGAACTTAGAATGGATT+GGG | - | chr3_2:86172832-86172851 | Msa0433670:CDS | 40.0% |
| CCGGTTAAGGAAATAGTCTT+TGG | + | chr3_2:86172867-86172886 | None:intergenic | 40.0% | |
| TTTCCTTAACCGGTCAACAT+TGG | - | chr3_2:86172874-86172893 | Msa0433670:intron | 40.0% | |
| AAACCAATGTTGACCGGTTA+AGG | + | chr3_2:86172880-86172899 | None:intergenic | 40.0% | |
| !! | TAACCGGTCAACATTGGTTT+CGG | - | chr3_2:86172880-86172899 | Msa0433670:intron | 40.0% |
| TTGATCTTGAGTATGCTGCT+TGG | - | chr3_2:86172942-86172961 | Msa0433670:intron | 40.0% | |
| ! | TGGTTATGTTGTGACTTGTG+TGG | - | chr3_2:86173016-86173035 | Msa0433670:intron | 40.0% |
| AAGAATCGATAAGAGCTGAG+CGG | - | chr3_2:86173039-86173058 | Msa0433670:intron | 40.0% | |
| CAATGTGTATGTACCGAGAA+TGG | - | chr3_2:86173113-86173132 | Msa0433670:intron | 40.0% | |
| ATTATGAACCAAGGTAAGCG+TGG | - | chr3_2:86173361-86173380 | Msa0433670:intron | 40.0% | |
| CGTGGCTTCTATTTAGATAG+AGG | + | chr3_2:86173423-86173442 | None:intergenic | 40.0% | |
| AAGAGTAGTTCATCTACACC+AGG | - | chr3_2:86173480-86173499 | Msa0433670:intron | 40.0% | |
| TAAAGAAGGAAAGCCTCTAG+CGG | - | chr3_2:86173553-86173572 | Msa0433670:intron | 40.0% | |
| CATGGAAAGTGGATCACTTA+AGG | + | chr3_2:86173610-86173629 | None:intergenic | 40.0% | |
| CTACATATACTGCCTAAGCA+TGG | + | chr3_2:86173628-86173647 | None:intergenic | 40.0% | |
| TGCGAGACAATGATATGTGT+CGG | + | chr3_2:86173688-86173707 | None:intergenic | 40.0% | |
| TTAGACATCGGACATAGTAG+TGG | + | chr3_2:86173811-86173830 | None:intergenic | 40.0% | |
| !!! | GATTTTCAGGAGTTGATACG+TGG | - | chr3_2:86173985-86174004 | Msa0433670:CDS | 40.0% |
| TTACTAGTCATGATCCATGG+AGG | + | chr3_2:86174027-86174046 | None:intergenic | 40.0% | |
| ACTAGTAATGTCACCCATCA+AGG | - | chr3_2:86174039-86174058 | Msa0433670:CDS | 40.0% | |
| AGTTTGCGGCATTATGTTGT+CGG | - | chr3_2:86174118-86174137 | Msa0433670:CDS | 40.0% | |
| !! | GAGTGTTTTTGCTCGCGATA+CGG | + | chr3_2:86171342-86171361 | None:intergenic | 45.0% |
| TGGTTGTCCTTCATCTACCA+AGG | - | chr3_2:86171418-86171437 | Msa0433670:three_prime_UTR | 45.0% | |
| TGAGTGACATGAGTGTTTGG+AGG | + | chr3_2:86171624-86171643 | None:intergenic | 45.0% | |
| TCGTGAGTGACATGAGTGTT+TGG | + | chr3_2:86171627-86171646 | None:intergenic | 45.0% | |
| ACCATCGGAAGGACAATCTT+CGG | + | chr3_2:86171748-86171767 | None:intergenic | 45.0% | |
| AACTCAAGAAGACCATCGGA+AGG | + | chr3_2:86171759-86171778 | None:intergenic | 45.0% | |
| AGCGAACTCAAGAAGACCAT+CGG | + | chr3_2:86171763-86171782 | None:intergenic | 45.0% | |
| CTTCTTGAGTTCGCTCTTGT+TGG | - | chr3_2:86171768-86171787 | Msa0433670:intron | 45.0% | |
| CTTGTTGGTCGTTCCAATGT+TGG | - | chr3_2:86171783-86171802 | Msa0433670:intron | 45.0% | |
| CATATCCAGGCAAATCAACC+AGG | + | chr3_2:86172020-86172039 | None:intergenic | 45.0% | |
| !! | CTGGTTGATTTGCCTGGATA+TGG | - | chr3_2:86172018-86172037 | Msa0433670:intron | 45.0% |
| TGCCTGGATATGGGTATGTA+TGG | - | chr3_2:86172028-86172047 | Msa0433670:intron | 45.0% | |
| GCCAAAAATTCTTGGGCCAA+TGG | - | chr3_2:86172253-86172272 | Msa0433670:intron | 45.0% | |
| CGCAGGAACTTAGAATGGAT+TGG | - | chr3_2:86172831-86172850 | Msa0433670:CDS | 45.0% | |
| AGACCGAAACCAATGTTGAC+CGG | + | chr3_2:86172886-86172905 | None:intergenic | 45.0% | |
| ! | TCTTGAGTATGCTGCTTGGT+TGG | - | chr3_2:86172946-86172965 | Msa0433670:intron | 45.0% |
| ! | CTTGAGTATGCTGCTTGGTT+GGG | - | chr3_2:86172947-86172966 | Msa0433670:intron | 45.0% |
| TGCTTGGTTGGGTGAGAATA+AGG | - | chr3_2:86172958-86172977 | Msa0433670:intron | 45.0% | |
| AGTTGACGACATCTGTGGAT+CGG | - | chr3_2:86173193-86173212 | Msa0433670:intron | 45.0% | |
| CACAGGTTTGATGTTAGACG+TGG | + | chr3_2:86173441-86173460 | None:intergenic | 45.0% | |
| CAATACAGCATGAGTGACAC+AGG | + | chr3_2:86173458-86173477 | None:intergenic | 45.0% | |
| GTAGTTCATCTACACCAGGT+TGG | - | chr3_2:86173484-86173503 | Msa0433670:intron | 45.0% | |
| GTGATCCACTTTCCATGCTT+AGG | - | chr3_2:86173613-86173632 | Msa0433670:intron | 45.0% | |
| TACTGCCTAAGCATGGAAAG+TGG | + | chr3_2:86173621-86173640 | None:intergenic | 45.0% | |
| TATCTCATCACGGCCTTGAT+GGG | + | chr3_2:86174055-86174074 | None:intergenic | 45.0% | |
| !!! | AATAATTTTTAATATAGTTA+TGG | - | chr3_2:86173144-86173163 | Msa0433670:intron | 5.0% |
| ! | GTTTTTGCTCGCGATACGGT+CGG | + | chr3_2:86171338-86171357 | None:intergenic | 50.0% |
| TATTGAGAAACACGCGGACG+CGG | + | chr3_2:86171388-86171407 | None:intergenic | 50.0% | |
| ACCGAAGATTGTCCTTCCGA+TGG | - | chr3_2:86171744-86171763 | Msa0433670:CDS | 50.0% | |
| !! | TGGTACCTGGTTGATTTGCC+TGG | - | chr3_2:86172012-86172031 | Msa0433670:intron | 50.0% |
| AAAATACCCATGCTCGCGTG+TGG | + | chr3_2:86172414-86172433 | None:intergenic | 50.0% | |
| GGCTTCTAGATGAGCAAAGC+CGG | + | chr3_2:86173219-86173238 | None:intergenic | 50.0% | |
| TTCAAGGTCCACGCTTACCT+TGG | + | chr3_2:86173372-86173391 | None:intergenic | 50.0% | |
| TGCAGCTTGATTGTCCAACC+TGG | + | chr3_2:86173501-86173520 | None:intergenic | 50.0% | |
| AGTCATGATCCATGGAGGCA+CGG | + | chr3_2:86174022-86174041 | None:intergenic | 50.0% | |
| GTATCTCATCACGGCCTTGA+TGG | + | chr3_2:86174056-86174075 | None:intergenic | 50.0% | |
| AGTGCTTGAGCCAGTAGTTC+CGG | + | chr3_2:86174098-86174117 | None:intergenic | 50.0% | |
| ! | CTGGCTCAAGCACTAGTTTG+CGG | - | chr3_2:86174104-86174123 | Msa0433670:CDS | 50.0% |
| CGGCATTATGTTGTCGGAGT+TGG | - | chr3_2:86174124-86174143 | Msa0433670:CDS | 50.0% | |
| TGCGCCGCAGGAACTTAGAA+TGG | - | chr3_2:86172826-86172845 | Msa0433670:CDS | 55.0% | |
| CATTCGAAACCGTGCCTCCA+TGG | - | chr3_2:86174010-86174029 | Msa0433670:CDS | 55.0% | |
| TACTCCATATGGCCCAGCTC+CGG | - | chr3_2:86174076-86174095 | Msa0433670:CDS | 55.0% | |
| CTCGCGTGTGGTGTGGGTTT+AGG | + | chr3_2:86172402-86172421 | None:intergenic | 60.0% | |
| TAGGTATGCATCTGCGCCGC+AGG | - | chr3_2:86172814-86172833 | Msa0433670:CDS | 60.0% | |
| GACGACATCTGTGGATCGGC+CGG | - | chr3_2:86173197-86173216 | Msa0433670:intron | 60.0% | |
| GAGGAGGGGTAAACCGCTAG+AGG | + | chr3_2:86173569-86173588 | None:intergenic | 60.0% | |
| AGTTCCGGAGCTGGGCCATA+TGG | + | chr3_2:86174083-86174102 | None:intergenic | 60.0% | |
| GAGCCAGTAGTTCCGGAGCT+GGG | + | chr3_2:86174091-86174110 | None:intergenic | 60.0% | |
| TGAGCCAGTAGTTCCGGAGC+TGG | + | chr3_2:86174092-86174111 | None:intergenic | 60.0% | |
| ! | AACACGCGGACGCGGTGTTG+TGG | + | chr3_2:86171380-86171399 | None:intergenic | 65.0% |
| ACCCACACCACACGCGAGCA+TGG | - | chr3_2:86172404-86172423 | Msa0433670:intron | 65.0% | |
| CCCATGCTCGCGTGTGGTGT+GGG | + | chr3_2:86172408-86172427 | None:intergenic | 65.0% | |
| CCCACACCACACGCGAGCAT+GGG | - | chr3_2:86172405-86172424 | Msa0433670:intron | 65.0% | |
| ACCCATGCTCGCGTGTGGTG+TGG | + | chr3_2:86172409-86172428 | None:intergenic | 65.0% | |
| TGGCCCAGCTCCGGAACTAC+TGG | - | chr3_2:86174085-86174104 | Msa0433670:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 86171326 | 86174346 | 86171326 | ID=Msa0433670;Name=Msa0433670 |
| chr3_2 | mRNA | 86171326 | 86174346 | 86171326 | ID=Msa0433670-mRNA-1;Parent=Msa0433670;Name=Msa0433670-mRNA-1;_AED=0.04;_eAED=0.04;_QI=91|1|1|1|1|1|4|227|301 |
| chr3_2 | exon | 86171326 | 86171771 | 86171326 | ID=Msa0433670-mRNA-1:exon:24844;Parent=Msa0433670-mRNA-1 |
| chr3_2 | exon | 86172693 | 86172855 | 86172693 | ID=Msa0433670-mRNA-1:exon:24843;Parent=Msa0433670-mRNA-1 |
| chr3_2 | exon | 86173632 | 86173701 | 86173632 | ID=Msa0433670-mRNA-1:exon:24842;Parent=Msa0433670-mRNA-1 |
| chr3_2 | exon | 86173802 | 86174346 | 86173802 | ID=Msa0433670-mRNA-1:exon:24841;Parent=Msa0433670-mRNA-1 |
| chr3_2 | five_prime_UTR | 86174256 | 86174346 | 86174256 | ID=Msa0433670-mRNA-1:five_prime_utr;Parent=Msa0433670-mRNA-1 |
| chr3_2 | CDS | 86173802 | 86174255 | 86173802 | ID=Msa0433670-mRNA-1:cds;Parent=Msa0433670-mRNA-1 |
| chr3_2 | CDS | 86173632 | 86173701 | 86173632 | ID=Msa0433670-mRNA-1:cds;Parent=Msa0433670-mRNA-1 |
| chr3_2 | CDS | 86172693 | 86172855 | 86172693 | ID=Msa0433670-mRNA-1:cds;Parent=Msa0433670-mRNA-1 |
| chr3_2 | CDS | 86171553 | 86171771 | 86171553 | ID=Msa0433670-mRNA-1:cds;Parent=Msa0433670-mRNA-1 |
| chr3_2 | three_prime_UTR | 86171326 | 86171552 | 86171326 | ID=Msa0433670-mRNA-1:three_prime_utr;Parent=Msa0433670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
