Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164530 | AES81593.2 | 90.385 | 364 | 23 | 4 | 1 | 363 | 24 | 376 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164530 | G7KXF9 | 90.385 | 364 | 23 | 4 | 1 | 363 | 24 | 376 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa1164530 | -0.825777 | 3.896147e-54 | -8.615850e-47 |
| Msa0002800 | Msa1164530 | 0.810039 | 1.405289e-50 | -8.615850e-47 |
| Msa0003560 | Msa1164530 | 0.803477 | 3.421932e-49 | -8.615850e-47 |
| Msa0032610 | Msa1164530 | 0.806124 | 9.580834e-50 | -8.615850e-47 |
| Msa0055280 | Msa1164530 | 0.806295 | 8.818011e-50 | -8.615850e-47 |
| Msa0101060 | Msa1164530 | 0.821267 | 4.421532e-53 | -8.615850e-47 |
| Msa0620640 | Msa1164530 | 0.808859 | 2.517365e-50 | -8.615850e-47 |
| Msa0638280 | Msa1164530 | 0.801889 | 7.277424e-49 | -8.615850e-47 |
| Msa0638320 | Msa1164530 | 0.802874 | 4.561414e-49 | -8.615850e-47 |
| Msa0677270 | Msa1164530 | 0.802494 | 5.461687e-49 | -8.615850e-47 |
| Msa0713230 | Msa1164530 | 0.801652 | 8.140102e-49 | -8.615850e-47 |
| Msa0724560 | Msa1164530 | 0.806508 | 7.949457e-50 | -8.615850e-47 |
| Msa0743650 | Msa1164530 | 0.820172 | 7.893921e-53 | -8.615850e-47 |
| Msa0755080 | Msa1164530 | 0.825240 | 5.221750e-54 | -8.615850e-47 |
| Msa0755090 | Msa1164530 | 0.815857 | 7.458328e-52 | -8.615850e-47 |
| Msa0787730 | Msa1164530 | 0.814394 | 1.575554e-51 | -8.615850e-47 |
| Msa0789270 | Msa1164530 | 0.822529 | 2.255846e-53 | -8.615850e-47 |
| Msa0789280 | Msa1164530 | 0.818456 | 1.941655e-52 | -8.615850e-47 |
| Msa0789290 | Msa1164530 | 0.816739 | 4.733438e-52 | -8.615850e-47 |
| Msa0789300 | Msa1164530 | 0.814558 | 1.449219e-51 | -8.615850e-47 |
| Msa0796950 | Msa1164530 | 0.817023 | 4.088498e-52 | -8.615850e-47 |
| Msa0797000 | Msa1164530 | 0.806454 | 8.163818e-50 | -8.615850e-47 |
| Msa0828570 | Msa1164530 | 0.804746 | 1.862724e-49 | -8.615850e-47 |
| Msa0834450 | Msa1164530 | 0.836077 | 1.156033e-56 | -8.615850e-47 |
| Msa0834460 | Msa1164530 | 0.839711 | 1.345443e-57 | -8.615850e-47 |
| Msa0148120 | Msa1164530 | 0.811384 | 7.192584e-51 | -8.615850e-47 |
| Msa0196020 | Msa1164530 | -0.803783 | 2.956486e-49 | -8.615850e-47 |
| Msa0223100 | Msa1164530 | 0.853534 | 2.243203e-61 | -8.615850e-47 |
| Msa0223290 | Msa1164530 | 0.870511 | 1.380442e-66 | -8.615850e-47 |
| Msa0223380 | Msa1164530 | 0.849941 | 2.340481e-60 | -8.615850e-47 |
| Msa0370870 | Msa1164530 | 0.803230 | 3.849500e-49 | -8.615850e-47 |
| Msa0377280 | Msa1164530 | 0.810639 | 1.042779e-50 | -8.615850e-47 |
| Msa0377530 | Msa1164530 | 0.884695 | 1.538689e-71 | -8.615850e-47 |
| Msa0379540 | Msa1164530 | 0.814643 | 1.387679e-51 | -8.615850e-47 |
| Msa0380040 | Msa1164530 | 0.826376 | 2.806157e-54 | -8.615850e-47 |
| Msa0404220 | Msa1164530 | 0.833078 | 6.556706e-56 | -8.615850e-47 |
| Msa0404700 | Msa1164530 | 0.829431 | 5.167168e-55 | -8.615850e-47 |
| Msa0412760 | Msa1164530 | 0.801941 | 7.101008e-49 | -8.615850e-47 |
| Msa0416320 | Msa1164530 | 0.809576 | 1.767020e-50 | -8.615850e-47 |
| Msa0426810 | Msa1164530 | 0.890450 | 9.746509e-74 | -8.615850e-47 |
| Msa0429290 | Msa1164530 | 0.822370 | 2.456572e-53 | -8.615850e-47 |
| Msa0462540 | Msa1164530 | 0.828215 | 1.017598e-54 | -8.615850e-47 |
| Msa0462590 | Msa1164530 | 0.802196 | 6.292194e-49 | -8.615850e-47 |
| Msa0467920 | Msa1164530 | -0.841980 | 3.419255e-58 | -8.615850e-47 |
| Msa0473240 | Msa1164530 | 0.824898 | 6.287794e-54 | -8.615850e-47 |
| Msa0475580 | Msa1164530 | 0.824128 | 9.545027e-54 | -8.615850e-47 |
| Msa1037020 | Msa1164530 | 0.997069 | 2.068824e-236 | -8.615850e-47 |
| Msa1075590 | Msa1164530 | 0.861828 | 7.798572e-64 | -8.615850e-47 |
| Msa1077670 | Msa1164530 | 0.902322 | 1.091855e-78 | -8.615850e-47 |
| Msa0253370 | Msa1164530 | 0.821029 | 5.016849e-53 | -8.615850e-47 |
| Msa0268090 | Msa1164530 | 0.821473 | 3.962611e-53 | -8.615850e-47 |
| Msa0275400 | Msa1164530 | -0.802056 | 6.722901e-49 | -8.615850e-47 |
| Msa0287670 | Msa1164530 | 0.801699 | 7.960829e-49 | -8.615850e-47 |
| Msa0292180 | Msa1164530 | 0.828301 | 9.702503e-55 | -8.615850e-47 |
| Msa0302650 | Msa1164530 | 0.861562 | 9.405758e-64 | -8.615850e-47 |
| Msa0330400 | Msa1164530 | 0.806390 | 8.418361e-50 | -8.615850e-47 |
| Msa0339870 | Msa1164530 | 0.804550 | 2.047130e-49 | -8.615850e-47 |
| Msa0362060 | Msa1164530 | 0.840693 | 7.458492e-58 | -8.615850e-47 |
| Msa0363100 | Msa1164530 | 0.826816 | 2.204544e-54 | -8.615850e-47 |
| Msa0363170 | Msa1164530 | 0.839683 | 1.368640e-57 | -8.615850e-47 |
| Msa1137090 | Msa1164530 | 0.863378 | 2.597970e-64 | -8.615850e-47 |
| Msa1162980 | Msa1164530 | 0.882708 | 8.305236e-71 | -8.615850e-47 |
| Msa1164530 | Msa1168040 | -0.811126 | 8.183797e-51 | -8.615850e-47 |
| Msa1164530 | Msa1174870 | 0.815651 | 8.287055e-52 | -8.615850e-47 |
| Msa1164530 | Msa1213020 | 0.810181 | 1.309646e-50 | -8.615850e-47 |
| Msa1164530 | Msa1215830 | 0.807818 | 4.196593e-50 | -8.615850e-47 |
| Msa1164530 | Msa1219810 | 0.823789 | 1.146153e-53 | -8.615850e-47 |
| Msa1164530 | Msa1234690 | 0.802158 | 6.405588e-49 | -8.615850e-47 |
| Msa1164530 | Msa1234730 | 0.810904 | 9.140092e-51 | -8.615850e-47 |
| Msa1164530 | Msa1272950 | 0.812039 | 5.180894e-51 | -8.615850e-47 |
| Msa1164530 | Msa1300090 | 0.805063 | 1.599844e-49 | -8.615850e-47 |
| Msa1164530 | Msa1301650 | 0.806321 | 8.707726e-50 | -8.615850e-47 |
| Msa1164530 | Msa1315110 | 0.814425 | 1.550973e-51 | -8.615850e-47 |
| Msa1164530 | Msa1368980 | 0.936304 | 2.150068e-97 | -8.615850e-47 |
| Msa1164530 | Msa1383480 | 0.810707 | 1.008065e-50 | -8.615850e-47 |
| Msa1164530 | Msa1427830 | 0.818664 | 1.742301e-52 | -8.615850e-47 |
| Msa1164530 | Msa1454110 | 0.831500 | 1.611280e-55 | -8.615850e-47 |
| Msa1164530 | Msa1456650 | 0.808463 | 3.059191e-50 | -8.615850e-47 |
| Msa0490300 | Msa1164530 | 0.818256 | 2.155122e-52 | -8.615850e-47 |
| Msa0504410 | Msa1164530 | 0.845837 | 3.164579e-59 | -8.615850e-47 |
| Msa0517490 | Msa1164530 | 0.878234 | 3.311455e-69 | -8.615850e-47 |
| Msa0519220 | Msa1164530 | 0.845986 | 2.883570e-59 | -8.615850e-47 |
| Msa0530380 | Msa1164530 | 0.814298 | 1.654602e-51 | -8.615850e-47 |
| Msa0532100 | Msa1164530 | -0.800782 | 1.226474e-48 | -8.615850e-47 |
| Msa0579340 | Msa1164530 | 0.804351 | 2.252417e-49 | -8.615850e-47 |
| Msa0848900 | Msa1164530 | 0.804913 | 1.719559e-49 | -8.615850e-47 |
| Msa0863770 | Msa1164530 | 0.819238 | 1.289604e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164530 | MtrunA17_Chr7g0262061 | 90.385 | 364 | 23 | 4 | 1 | 363 | 1 | 353 | 0.0 | 603 |
| Msa1164530 | MtrunA17_Chr7g0262541 | 76.330 | 376 | 63 | 11 | 1 | 363 | 1 | 363 | 2.31e-163 | 461 |
| Msa1164530 | MtrunA17_Chr1g0186111 | 51.908 | 131 | 58 | 2 | 209 | 339 | 250 | 375 | 8.04e-40 | 144 |
| Msa1164530 | MtrunA17_Chr1g0186111 | 40.517 | 232 | 97 | 7 | 120 | 344 | 38 | 235 | 1.05e-39 | 144 |
| Msa1164530 | MtrunA17_Chr4g0063891 | 57.547 | 106 | 42 | 1 | 231 | 333 | 153 | 258 | 1.17e-36 | 134 |
| Msa1164530 | MtrunA17_Chr5g0411051 | 52.083 | 96 | 46 | 0 | 240 | 335 | 125 | 220 | 2.62e-32 | 121 |
| Msa1164530 | MtrunA17_Chr2g0333081 | 50.000 | 104 | 52 | 0 | 237 | 340 | 139 | 242 | 3.82e-31 | 119 |
| Msa1164530 | MtrunA17_Chr3g0104511 | 38.776 | 98 | 60 | 0 | 238 | 335 | 400 | 497 | 2.41e-17 | 83.2 |
| Msa1164530 | MtrunA17_Chr3g0104511 | 28.834 | 163 | 88 | 6 | 204 | 338 | 303 | 465 | 9.49e-11 | 63.2 |
| Msa1164530 | MtrunA17_Chr5g0436741 | 34.259 | 108 | 71 | 0 | 228 | 335 | 289 | 396 | 2.07e-16 | 80.1 |
| Msa1164530 | MtrunA17_Chr4g0003301 | 43.548 | 62 | 35 | 0 | 263 | 324 | 5 | 66 | 2.45e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164530 | AT4G17940.1 | 53.535 | 99 | 46 | 0 | 237 | 335 | 150 | 248 | 2.50e-34 | 128 |
| Msa1164530 | AT5G20190.1 | 55.789 | 95 | 42 | 0 | 240 | 334 | 159 | 253 | 2.17e-33 | 125 |
| Msa1164530 | AT1G04530.1 | 57.692 | 104 | 41 | 2 | 232 | 335 | 118 | 218 | 5.09e-31 | 120 |
| Msa1164530 | AT1G04530.1 | 33.898 | 118 | 58 | 2 | 240 | 337 | 193 | 310 | 2.96e-14 | 73.2 |
| Msa1164530 | AT4G32340.1 | 53.535 | 99 | 45 | 1 | 237 | 334 | 110 | 208 | 3.10e-28 | 110 |
| Msa1164530 | AT1G80130.1 | 50.495 | 101 | 50 | 0 | 233 | 333 | 161 | 261 | 1.24e-27 | 110 |
| Msa1164530 | AT2G29670.1 | 42.857 | 98 | 56 | 0 | 238 | 335 | 421 | 518 | 6.10e-20 | 91.7 |
| Msa1164530 | AT2G29670.2 | 42.857 | 98 | 56 | 0 | 238 | 335 | 421 | 518 | 6.10e-20 | 91.7 |
| Msa1164530 | AT1G07280.3 | 40.351 | 114 | 61 | 1 | 237 | 350 | 435 | 541 | 4.82e-19 | 89.0 |
| Msa1164530 | AT1G07280.1 | 40.351 | 114 | 61 | 1 | 237 | 350 | 435 | 541 | 4.82e-19 | 89.0 |
| Msa1164530 | AT1G07280.2 | 40.351 | 114 | 61 | 1 | 237 | 350 | 435 | 541 | 4.82e-19 | 89.0 |
| Msa1164530 | AT3G47080.1 | 41.414 | 99 | 58 | 0 | 237 | 335 | 400 | 498 | 3.43e-16 | 80.1 |
Find 162 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTCGTTTATGTCTCTTTA+AGG | 0.121559 | 7_4:+56234482 | None:intergenic |
| GAAACCCGGCTTGTGATTTC+TGG | 0.126802 | 7_4:+56234918 | None:intergenic |
| CCAAGGTTAACTGGCTTAAT+TGG | 0.183967 | 7_4:+56234434 | None:intergenic |
| GTCCTTTGATACTTTACTTT+TGG | 0.211606 | 7_4:+56236526 | None:intergenic |
| CAGTTCGTTGACTACTTAAA+TGG | 0.212815 | 7_4:+56234837 | None:intergenic |
| GTGGCAAGTGGTTGATTATT+TGG | 0.253972 | 7_4:+56236816 | None:intergenic |
| TCCTTGTGTTTAATTACTTC+AGG | 0.267734 | 7_4:+56234673 | None:intergenic |
| AGCTCTTCAACACCAGTTCT+TGG | 0.272535 | 7_4:-56236441 | Msa1164530:CDS |
| TTATGCTCAGTTTCTGTATA+AGG | 0.290532 | 7_4:-56235683 | Msa1164530:intron |
| AGGATTCAGGATGAAGACTA+TGG | 0.297329 | 7_4:+56236364 | None:intergenic |
| GATTATAGTTCCATGGGTTC+TGG | 0.300216 | 7_4:-56235796 | Msa1164530:CDS |
| CAATTCTCTTCCTTATATAA+AGG | 0.301517 | 7_4:-56236791 | Msa1164530:five_prime_UTR |
| CACAGTATGGGAAGCTGGTT+TGG | 0.310028 | 7_4:-56235353 | Msa1164530:CDS |
| ACGCGTAGCTTACAAAGTTT+TGG | 0.321115 | 7_4:+56234614 | None:intergenic |
| GTCATTTGGATCTGCTAGTA+TGG | 0.327394 | 7_4:+56235389 | None:intergenic |
| TGAAGAGAGATTCAATTATA+TGG | 0.329630 | 7_4:-56236142 | Msa1164530:CDS |
| CCTCGTTTATGTCTCTTTAA+GGG | 0.333533 | 7_4:+56234483 | None:intergenic |
| CTTGTTCTTATCCGTTCATT+TGG | 0.335935 | 7_4:-56234791 | Msa1164530:three_prime_UTR |
| CCGCGTATGCAAGTTTCCTT+TGG | 0.343155 | 7_4:-56235130 | Msa1164530:CDS |
| TAAACCAGATCCTTTATATA+AGG | 0.343497 | 7_4:+56236781 | None:intergenic |
| GACAGAACTTCTCCGTCATT+TGG | 0.350188 | 7_4:+56235375 | None:intergenic |
| GGAGAAGTTCTGTCACAGTA+TGG | 0.354968 | 7_4:-56235366 | Msa1164530:CDS |
| GGAAGAATATTACAAGAAAA+TGG | 0.355814 | 7_4:-56235743 | Msa1164530:CDS |
| GGTTCTCTCCTATCTTCTTC+CGG | 0.364585 | 7_4:-56236420 | Msa1164530:CDS |
| AAGAGATATATTCCATCATC+AGG | 0.373387 | 7_4:-56234710 | Msa1164530:three_prime_UTR |
| CAAGATCAGGTGATGAGAAT+TGG | 0.375406 | 7_4:+56236693 | None:intergenic |
| TATTCATATATCATGCATTA+AGG | 0.379109 | 7_4:-56236840 | Msa1164530:five_prime_UTR |
| TTCTCTCTTTCAAAGCAAAC+AGG | 0.386547 | 7_4:-56236057 | Msa1164530:CDS |
| GTAATGGTTGTGGATGGTTT+AGG | 0.389844 | 7_4:-56234545 | Msa1164530:three_prime_UTR |
| TTAAGTGCATGAAAGGATTC+AGG | 0.398047 | 7_4:+56236351 | None:intergenic |
| CATCACCTGATCTTGCTTCA+AGG | 0.401878 | 7_4:-56236685 | Msa1164530:five_prime_UTR |
| CGTCAAATTGTCTACAAGAT+AGG | 0.402681 | 7_4:-56234236 | Msa1164530:three_prime_UTR |
| AATGATGGAGATAGTAATCA+TGG | 0.406178 | 7_4:-56235769 | Msa1164530:CDS |
| CTATGGGAATGATGATGAAT+AGG | 0.407108 | 7_4:+56236381 | None:intergenic |
| CTCAGAAACAATGGGTTCCC+AGG | 0.407926 | 7_4:+56235709 | None:intergenic |
| CGCGTATGCAAGTTTCCTTT+GGG | 0.410780 | 7_4:-56235129 | Msa1164530:CDS |
| ACGTGATTGTTACAGATTGT+AGG | 0.411205 | 7_4:+56234256 | None:intergenic |
| TCTTCCTTATATAAAGGATC+TGG | 0.415688 | 7_4:-56236785 | Msa1164530:five_prime_UTR |
| TCAGCAATGGAAGGAGAGAT+TGG | 0.418500 | 7_4:+56236255 | None:intergenic |
| CTACTTAAATGGTTACAAAC+TGG | 0.423507 | 7_4:+56234848 | None:intergenic |
| CTCCAGTACAACACAGAACT+AGG | 0.426451 | 7_4:-56234329 | Msa1164530:three_prime_UTR |
| CCTTGTGTTTAATTACTTCA+GGG | 0.432857 | 7_4:+56234674 | None:intergenic |
| AGTTCAATCTGAAGGGAACT+TGG | 0.434632 | 7_4:-56236199 | Msa1164530:CDS |
| AGCATATTCTGATGCACATA+AGG | 0.436021 | 7_4:-56234976 | Msa1164530:three_prime_UTR |
| CCGGGTTTCTGTTGCAGTGT+CGG | 0.438004 | 7_4:-56234904 | Msa1164530:three_prime_UTR |
| TTGTATTTGTACCTGTCATC+AGG | 0.438683 | 7_4:+56235270 | None:intergenic |
| TACTGCTCGTTCAAAATAGC+TGG | 0.441969 | 7_4:+56235302 | None:intergenic |
| TTCAGTGAGACAAAGATGTT+TGG | 0.449053 | 7_4:-56236100 | Msa1164530:CDS |
| TCCCTAGTTCTGTGTTGTAC+TGG | 0.451277 | 7_4:+56234327 | None:intergenic |
| TGAAGGAACCGGAAGAAGAT+AGG | 0.454703 | 7_4:+56236412 | None:intergenic |
| GGTCAAATTGAACTAGTAGT+TGG | 0.454946 | 7_4:+56234277 | None:intergenic |
| GGACTCATCAGAATCTGAAA+AGG | 0.461980 | 7_4:-56236663 | Msa1164530:five_prime_UTR |
| ATTGAAATGTATCTTGCAAA+GGG | 0.463349 | 7_4:-56235880 | Msa1164530:CDS |
| GGTGTTGATGTGAGTGGTGA+TGG | 0.469703 | 7_4:-56235853 | Msa1164530:CDS |
| AGGACTATCTGTGAAGGAAC+CGG | 0.472882 | 7_4:+56236401 | None:intergenic |
| AATATTCCTCTGCTCCTTCA+CGG | 0.473833 | 7_4:+56235421 | None:intergenic |
| ATATGGACTCTTCTTCTAAG+AGG | 0.475130 | 7_4:-56236125 | Msa1164530:CDS |
| ACAGTATGGGAAGCTGGTTT+GGG | 0.478494 | 7_4:-56235352 | Msa1164530:CDS |
| TGCTTTGAAAGAGAGAAAGA+TGG | 0.480264 | 7_4:+56236063 | None:intergenic |
| AAGAGAAAATAATGTATTCA+AGG | 0.483105 | 7_4:+56234352 | None:intergenic |
| TGGATCTGCTAGTATGGCTC+TGG | 0.483784 | 7_4:+56235395 | None:intergenic |
| CCAATTAAGCCAGTTAACCT+TGG | 0.489049 | 7_4:-56234434 | Msa1164530:three_prime_UTR |
| ATGGGTTCTGGAGGGAATGA+TGG | 0.489888 | 7_4:-56235784 | Msa1164530:CDS |
| TTTGCTAAAAGCATTGCAAT+GGG | 0.494903 | 7_4:-56234397 | Msa1164530:three_prime_UTR |
| AGGTGGTGATTATAGTTCCA+TGG | 0.497150 | 7_4:-56235803 | Msa1164530:CDS |
| TTTGATGAGGAGGGACAGGT+TGG | 0.498943 | 7_4:-56235907 | Msa1164530:CDS |
| GGTGGCTGCAGAGGAGGGAA+TGG | 0.499605 | 7_4:-56235826 | Msa1164530:CDS |
| GATAGGAGAGAACCAAGAAC+TGG | 0.506501 | 7_4:+56236429 | None:intergenic |
| TCTGTCACAGTATGGGAAGC+TGG | 0.506983 | 7_4:-56235358 | Msa1164530:CDS |
| ATTTGCTAAAAGCATTGCAA+TGG | 0.507222 | 7_4:-56234398 | Msa1164530:three_prime_UTR |
| ATACATTACAACCCTGATGA+TGG | 0.509796 | 7_4:+56234698 | None:intergenic |
| ATAAAAGCACCAACTTATGA+AGG | 0.514128 | 7_4:-56234766 | Msa1164530:three_prime_UTR |
| TCAGGTGATGAGAATTGGAC+AGG | 0.515437 | 7_4:+56236698 | None:intergenic |
| TTCAACTCAAGTTGGAGCAA+AGG | 0.516481 | 7_4:+56236964 | None:intergenic |
| GATTGTGATGATGATGATGT+TGG | 0.516587 | 7_4:+56236301 | None:intergenic |
| AGTAGTGTGCTGAATAGTAC+TGG | 0.517028 | 7_4:-56235982 | Msa1164530:CDS |
| GGTGGTGATTATAGTTCCAT+GGG | 0.517897 | 7_4:-56235802 | Msa1164530:CDS |
| ATTAGAAGAGTTCAATCTGA+AGG | 0.520058 | 7_4:-56236207 | Msa1164530:CDS |
| TTTGGAGCTATGGCAACTAC+AGG | 0.520195 | 7_4:-56235044 | Msa1164530:CDS |
| CATAATTCCTCAGAAACAAT+GGG | 0.520475 | 7_4:+56235701 | None:intergenic |
| GAGTCCCTTGAAGCAAGATC+AGG | 0.521924 | 7_4:+56236680 | None:intergenic |
| AGTAATTAAACACAAGGATG+TGG | 0.524529 | 7_4:-56234668 | Msa1164530:three_prime_UTR |
| ATCACCTGATCTTGCTTCAA+GGG | 0.524561 | 7_4:-56236684 | Msa1164530:five_prime_UTR |
| ATGTATCTTGCAAAGGGACT+TGG | 0.525659 | 7_4:-56235874 | Msa1164530:CDS |
| CTCCAAAAGTAAAGTATCAA+AGG | 0.525663 | 7_4:-56236528 | Msa1164530:five_prime_UTR |
| GACTCATCAGAATCTGAAAA+GGG | 0.526066 | 7_4:-56236662 | Msa1164530:intron |
| TATTGAAATGTATCTTGCAA+AGG | 0.532810 | 7_4:-56235881 | Msa1164530:CDS |
| GACATTCAAGATCAAAGTAA+TGG | 0.533871 | 7_4:-56234561 | Msa1164530:three_prime_UTR |
| TGCAGAGGAGGGAATGGAGG+TGG | 0.534796 | 7_4:-56235820 | Msa1164530:CDS |
| ATCATTCCCTCCAGAACCCA+TGG | 0.538649 | 7_4:+56235786 | None:intergenic |
| GTTGTTACAACTAGTAGCAT+AGG | 0.539151 | 7_4:+56236167 | None:intergenic |
| GCAACTAAACAATGCTCTGA+TGG | 0.539446 | 7_4:-56234637 | Msa1164530:three_prime_UTR |
| AGAACCAGAAATCACAAGCC+GGG | 0.539619 | 7_4:-56234922 | Msa1164530:three_prime_UTR |
| TGATTGGTTGATGATGATTG+AGG | 0.540528 | 7_4:+56236482 | None:intergenic |
| GGCTGCAGAGGAGGGAATGG+AGG | 0.542066 | 7_4:-56235823 | Msa1164530:CDS |
| GGTATAGGTGGCTGCAGAGG+AGG | 0.542557 | 7_4:-56235832 | Msa1164530:CDS |
| ATGATGGAGATAGTAATCAT+GGG | 0.542937 | 7_4:-56235768 | Msa1164530:CDS |
| ATCTTGAAAGACAAAACAAA+GGG | 0.547476 | 7_4:-56236233 | Msa1164530:CDS |
| CAAGATCAAAGTAATGGTTG+TGG | 0.548382 | 7_4:-56234555 | Msa1164530:three_prime_UTR |
| TCAGAAACAATGGGTTCCCA+GGG | 0.550997 | 7_4:+56235710 | None:intergenic |
| CTGGGAACCCATTGTTTCTG+AGG | 0.551696 | 7_4:-56235708 | Msa1164530:CDS |
| TTATTTAGGTATTGAATGAG+TGG | 0.558343 | 7_4:+56236905 | None:intergenic |
| TGGTTGATGATGATTGAGGA+TGG | 0.561065 | 7_4:+56236486 | None:intergenic |
| GCATAATTCCTCAGAAACAA+TGG | 0.561255 | 7_4:+56235700 | None:intergenic |
| AGAAAGATGGAATGGTCTCA+AGG | 0.561384 | 7_4:+56236076 | None:intergenic |
| TGAAAGAGAGAAAGATGGAA+TGG | 0.562440 | 7_4:+56236068 | None:intergenic |
| TATAGTTCCATGGGTTCTGG+AGG | 0.562677 | 7_4:-56235793 | Msa1164530:CDS |
| CCCTGAAGTAATTAAACACA+AGG | 0.563988 | 7_4:-56234674 | Msa1164530:three_prime_UTR |
| AAATTGTCTACAAGATAGGC+TGG | 0.565762 | 7_4:-56234232 | Msa1164530:three_prime_UTR |
| TTTAGGTATTGAATGAGTGG+TGG | 0.566079 | 7_4:+56236908 | None:intergenic |
| GATGTGAGTGGTGATGGTAT+AGG | 0.566548 | 7_4:-56235847 | Msa1164530:CDS |
| TGGAGCGAAGTGGTTGGTGG+TGG | 0.569007 | 7_4:+56236321 | None:intergenic |
| TTGTCTTTCAAGATCAGCAA+TGG | 0.569009 | 7_4:+56236242 | None:intergenic |
| GAGAAGTTCTGTCACAGTAT+GGG | 0.569625 | 7_4:-56235365 | Msa1164530:CDS |
| ATCAAAGTAATGGTTGTGGA+TGG | 0.572140 | 7_4:-56234551 | Msa1164530:three_prime_UTR |
| TACAAGCTTCTCCTGATGAC+AGG | 0.573449 | 7_4:-56235281 | Msa1164530:intron |
| AGGAAGACTATTGTCTATGT+CGG | 0.574637 | 7_4:-56234514 | Msa1164530:three_prime_UTR |
| GGATGGTTTAGGATCAGAGC+AGG | 0.574666 | 7_4:-56234534 | Msa1164530:three_prime_UTR |
| TATAAGGAAGAGAATTGTAG+TGG | 0.575151 | 7_4:+56236797 | None:intergenic |
| ACAGAGGAAGACGAGGATGC+AGG | 0.575261 | 7_4:-56235104 | Msa1164530:CDS |
| CCAAAGGAAACTTGCATACG+CGG | 0.576728 | 7_4:+56235130 | None:intergenic |
| TAGATGCTTAAGTGCATGAA+AGG | 0.576922 | 7_4:+56236344 | None:intergenic |
| CGTCTTCCTCTGTGTCCCAA+AGG | 0.579496 | 7_4:+56235114 | None:intergenic |
| CTTTCAAGATCAGCAATGGA+AGG | 0.579663 | 7_4:+56236246 | None:intergenic |
| GTGAGTGGTGATGGTATAGG+TGG | 0.580814 | 7_4:-56235844 | Msa1164530:CDS |
| AAAATGGTTCAGCAAAACCC+TGG | 0.581315 | 7_4:-56235727 | Msa1164530:CDS |
| AATGTTGAGGCAAACATTGT+GGG | 0.586251 | 7_4:+56235072 | None:intergenic |
| TGTTGGAGCGAAGTGGTTGG+TGG | 0.586507 | 7_4:+56236318 | None:intergenic |
| TGGAGATAGTAATCATGGGG+TGG | 0.587358 | 7_4:-56235764 | Msa1164530:CDS |
| AAGAGAATTGTAGTGGCAAG+TGG | 0.588566 | 7_4:+56236804 | None:intergenic |
| GGATTCAGGATGAAGACTAT+GGG | 0.588650 | 7_4:+56236365 | None:intergenic |
| TATTGAATGAGTGGTGGACA+AGG | 0.592452 | 7_4:+56236914 | None:intergenic |
| TCCAGTACAACACAGAACTA+GGG | 0.596520 | 7_4:-56234328 | Msa1164530:three_prime_UTR |
| AGCTGATATATTCGATAGAG+CGG | 0.596561 | 7_4:+56234304 | None:intergenic |
| TTAGAAGAGTTCAATCTGAA+GGG | 0.596938 | 7_4:-56236206 | Msa1164530:CDS |
| GTATAGGTGGCTGCAGAGGA+GGG | 0.597903 | 7_4:-56235831 | Msa1164530:CDS |
| GAGAACCAGAAATCACAAGC+CGG | 0.603281 | 7_4:-56234923 | Msa1164530:three_prime_UTR |
| GATTGTTTATATTCTTGCAA+AGG | 0.604248 | 7_4:-56234206 | Msa1164530:three_prime_UTR |
| CCGACACTGCAACAGAAACC+CGG | 0.605455 | 7_4:+56234904 | None:intergenic |
| GAAAGATGGAATGGTCTCAA+GGG | 0.610385 | 7_4:+56236077 | None:intergenic |
| GCTCCAAAATGAAAATGTTG+AGG | 0.611118 | 7_4:+56235059 | None:intergenic |
| GATCTTGAAAGACAAAACAA+AGG | 0.612241 | 7_4:-56236234 | Msa1164530:CDS |
| GAATAGTACTGGCAGTGGTG+TGG | 0.617162 | 7_4:-56235971 | Msa1164530:CDS |
| AAATGGTTCAGCAAAACCCT+GGG | 0.619938 | 7_4:-56235726 | Msa1164530:CDS |
| AGAGATATATTCCATCATCA+GGG | 0.621833 | 7_4:-56234709 | Msa1164530:three_prime_UTR |
| ATGAATAGGACTATCTGTGA+AGG | 0.622956 | 7_4:+56236395 | None:intergenic |
| GGTGGTAAATGATGAAGTGA+AGG | 0.634203 | 7_4:-56235950 | Msa1164530:CDS |
| AAATGTTGAGGCAAACATTG+TGG | 0.636468 | 7_4:+56235071 | None:intergenic |
| ACAAGACCGTGAAGGAGCAG+AGG | 0.636751 | 7_4:-56235427 | Msa1164530:CDS |
| TGATGGAGATAGTAATCATG+GGG | 0.637625 | 7_4:-56235767 | Msa1164530:CDS |
| GATGGTATAGGTGGCTGCAG+AGG | 0.639534 | 7_4:-56235835 | Msa1164530:CDS |
| ATAGTTCCATGGGTTCTGGA+GGG | 0.645436 | 7_4:-56235792 | Msa1164530:CDS |
| TGATGTTGGAGCGAAGTGGT+TGG | 0.647415 | 7_4:+56236315 | None:intergenic |
| ATACTAGCAGATCCAAATGA+CGG | 0.662236 | 7_4:-56235387 | Msa1164530:CDS |
| CAGTGCAAACAAGACCGTGA+AGG | 0.662241 | 7_4:-56235435 | Msa1164530:CDS |
| TAGTACTGGCAGTGGTGTGG+TGG | 0.662574 | 7_4:-56235968 | Msa1164530:CDS |
| GGACTTGGTGTTGATGTGAG+TGG | 0.667908 | 7_4:-56235859 | Msa1164530:CDS |
| TTGGGACACAGAGGAAGACG+AGG | 0.672619 | 7_4:-56235111 | Msa1164530:CDS |
| GTGCTGAATAGTACTGGCAG+TGG | 0.681444 | 7_4:-56235976 | Msa1164530:CDS |
| ATGATGATGTTGGAGCGAAG+TGG | 0.693701 | 7_4:+56236311 | None:intergenic |
| AAGTTTCCTTTGGGACACAG+AGG | 0.726292 | 7_4:-56235120 | Msa1164530:CDS |
| CCCTTAAAGAGACATAAACG+AGG | 0.759862 | 7_4:-56234483 | Msa1164530:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAGGTTTATTTTATTT+AGG | + | chr7_4:56234221-56234240 | None:intergenic | 10.0% |
| !!! | AAATAAACCTTTTATTTTTT+TGG | - | chr7_4:56234226-56234245 | Msa1164530:three_prime_UTR | 10.0% |
| !!! | AATAAACCTTTTATTTTTTT+GGG | - | chr7_4:56234227-56234246 | Msa1164530:three_prime_UTR | 10.0% |
| !!! | TCTAGATTAAAATTTTGATA+TGG | + | chr7_4:56234173-56234192 | None:intergenic | 15.0% |
| !!! | TTTTCACCCAAAAAAATAAA+AGG | + | chr7_4:56234236-56234255 | None:intergenic | 20.0% |
| !! | TATTCATATATCATGCATTA+AGG | - | chr7_4:56234269-56234288 | Msa1164530:three_prime_UTR | 20.0% |
| !!! | TAAAAGAATTTTCAACAAGT+TGG | + | chr7_4:56235519-56235538 | None:intergenic | 20.0% |
| !! | AAGAGAAAATAATGTATTCA+AGG | + | chr7_4:56236760-56236779 | None:intergenic | 20.0% |
| !!! | TTATTTAGGTATTGAATGAG+TGG | + | chr7_4:56234207-56234226 | None:intergenic | 25.0% |
| ! | CAATTCTCTTCCTTATATAA+AGG | - | chr7_4:56234318-56234337 | Msa1164530:three_prime_UTR | 25.0% |
| ! | TAAACCAGATCCTTTATATA+AGG | + | chr7_4:56234331-56234350 | None:intergenic | 25.0% |
| ! | ATCTTGAAAGACAAAACAAA+GGG | - | chr7_4:56234876-56234895 | Msa1164530:three_prime_UTR | 25.0% |
| ! | TGAAGAGAGATTCAATTATA+TGG | - | chr7_4:56234967-56234986 | Msa1164530:three_prime_UTR | 25.0% |
| ! | TATTGAAATGTATCTTGCAA+AGG | - | chr7_4:56235228-56235247 | Msa1164530:intron | 25.0% |
| ! | ATTGAAATGTATCTTGCAAA+GGG | - | chr7_4:56235229-56235248 | Msa1164530:intron | 25.0% |
| ! | GGAAGAATATTACAAGAAAA+TGG | - | chr7_4:56235366-56235385 | Msa1164530:CDS | 25.0% |
| ! | ATTAGTGCATACAAAACTAT+TGG | - | chr7_4:56235616-56235635 | Msa1164530:intron | 25.0% |
| ! | GATTGTTTATATTCTTGCAA+AGG | - | chr7_4:56236903-56236922 | Msa1164530:five_prime_UTR | 25.0% |
| ! | ATATGGTTTTCAACTCAAGT+TGG | + | chr7_4:56234156-56234175 | None:intergenic | 30.0% |
| TATAAGGAAGAGAATTGTAG+TGG | + | chr7_4:56234315-56234334 | None:intergenic | 30.0% | |
| TCTTCCTTATATAAAGGATC+TGG | - | chr7_4:56234324-56234343 | Msa1164530:three_prime_UTR | 30.0% | |
| TGTGAGAAAAACATTAGTGA+TGG | + | chr7_4:56234503-56234522 | None:intergenic | 30.0% | |
| TACTGCAAGGAAAAAAAACT+TGG | + | chr7_4:56234552-56234571 | None:intergenic | 30.0% | |
| ! | CTCCAAAAGTAAAGTATCAA+AGG | - | chr7_4:56234581-56234600 | Msa1164530:three_prime_UTR | 30.0% |
| ! | GTCCTTTGATACTTTACTTT+TGG | + | chr7_4:56234586-56234605 | None:intergenic | 30.0% |
| ! | TTAGCAACATGTTTTCTGAT+TGG | + | chr7_4:56234646-56234665 | None:intergenic | 30.0% |
| GATCTTGAAAGACAAAACAA+AGG | - | chr7_4:56234875-56234894 | Msa1164530:three_prime_UTR | 30.0% | |
| ATTAGAAGAGTTCAATCTGA+AGG | - | chr7_4:56234902-56234921 | Msa1164530:three_prime_UTR | 30.0% | |
| TTAGAAGAGTTCAATCTGAA+GGG | - | chr7_4:56234903-56234922 | Msa1164530:three_prime_UTR | 30.0% | |
| !! | GAAACTGATTTTGAAGATGA+AGG | - | chr7_4:56235088-56235107 | Msa1164530:CDS | 30.0% |
| ! | AATGATGGAGATAGTAATCA+TGG | - | chr7_4:56235340-56235359 | Msa1164530:CDS | 30.0% |
| ! | ATGATGGAGATAGTAATCAT+GGG | - | chr7_4:56235341-56235360 | Msa1164530:CDS | 30.0% |
| CATAATTCCTCAGAAACAAT+GGG | + | chr7_4:56235411-56235430 | None:intergenic | 30.0% | |
| TTATGCTCAGTTTCTGTATA+AGG | - | chr7_4:56235426-56235445 | Msa1164530:CDS | 30.0% | |
| ! | TCATTTTCAACTCCAAAACT+TGG | - | chr7_4:56235589-56235608 | Msa1164530:intron | 30.0% |
| ! | GCACTAATAAAACCAAGTTT+TGG | + | chr7_4:56235604-56235623 | None:intergenic | 30.0% |
| ! | TTGCCTCAACATTTTCATTT+TGG | - | chr7_4:56236047-56236066 | Msa1164530:CDS | 30.0% |
| !!! | ACATTTTCATTTTGGAGCTA+TGG | - | chr7_4:56236055-56236074 | Msa1164530:CDS | 30.0% |
| CTACTTAAATGGTTACAAAC+TGG | + | chr7_4:56236264-56236283 | None:intergenic | 30.0% | |
| ! | TGCTTTTATTGCCAAATGAA+CGG | + | chr7_4:56236332-56236351 | None:intergenic | 30.0% |
| !! | ATAAAAGCACCAACTTATGA+AGG | - | chr7_4:56236343-56236362 | Msa1164530:CDS | 30.0% |
| AAGGAAAAACGAGATTACAA+GGG | - | chr7_4:56236362-56236381 | Msa1164530:CDS | 30.0% | |
| AAGAGATATATTCCATCATC+AGG | - | chr7_4:56236399-56236418 | Msa1164530:CDS | 30.0% | |
| AGAGATATATTCCATCATCA+GGG | - | chr7_4:56236400-56236419 | Msa1164530:CDS | 30.0% | |
| CCTTGTGTTTAATTACTTCA+GGG | + | chr7_4:56236438-56236457 | None:intergenic | 30.0% | |
| TCCTTGTGTTTAATTACTTC+AGG | + | chr7_4:56236439-56236458 | None:intergenic | 30.0% | |
| AGTAATTAAACACAAGGATG+TGG | - | chr7_4:56236441-56236460 | Msa1164530:CDS | 30.0% | |
| GACATTCAAGATCAAAGTAA+TGG | - | chr7_4:56236548-56236567 | Msa1164530:intron | 30.0% | |
| !! | AAATCTTGGTAACTTTTCCA+AGG | + | chr7_4:56236695-56236714 | None:intergenic | 30.0% |
| !! | ATTTGCTAAAAGCATTGCAA+TGG | - | chr7_4:56236711-56236730 | Msa1164530:five_prime_UTR | 30.0% |
| !! | TTTGCTAAAAGCATTGCAAT+GGG | - | chr7_4:56236712-56236731 | Msa1164530:five_prime_UTR | 30.0% |
| !! | TTTAGGTATTGAATGAGTGG+TGG | + | chr7_4:56234204-56234223 | None:intergenic | 35.0% |
| GACTCATCAGAATCTGAAAA+GGG | - | chr7_4:56234447-56234466 | Msa1164530:three_prime_UTR | 35.0% | |
| ! | AAAACATTAGTGATGGAGAG+AGG | + | chr7_4:56234496-56234515 | None:intergenic | 35.0% |
| GGAGTACAAATATTACTGCA+AGG | + | chr7_4:56234565-56234584 | None:intergenic | 35.0% | |
| !! | GAGGATGGATCAGTTTTATA+TGG | + | chr7_4:56234611-56234630 | None:intergenic | 35.0% |
| !! | TGATTGGTTGATGATGATTG+AGG | + | chr7_4:56234630-56234649 | None:intergenic | 35.0% |
| ATGAATAGGACTATCTGTGA+AGG | + | chr7_4:56234717-56234736 | None:intergenic | 35.0% | |
| ! | CTATGGGAATGATGATGAAT+AGG | + | chr7_4:56234731-56234750 | None:intergenic | 35.0% |
| TTAAGTGCATGAAAGGATTC+AGG | + | chr7_4:56234761-56234780 | None:intergenic | 35.0% | |
| TAGATGCTTAAGTGCATGAA+AGG | + | chr7_4:56234768-56234787 | None:intergenic | 35.0% | |
| ! | GATTGTGATGATGATGATGT+TGG | + | chr7_4:56234811-56234830 | None:intergenic | 35.0% |
| TTGTCTTTCAAGATCAGCAA+TGG | + | chr7_4:56234870-56234889 | None:intergenic | 35.0% | |
| GTTGTTACAACTAGTAGCAT+AGG | + | chr7_4:56234945-56234964 | None:intergenic | 35.0% | |
| ATATGGACTCTTCTTCTAAG+AGG | - | chr7_4:56234984-56235003 | Msa1164530:three_prime_UTR | 35.0% | |
| TTCAGTGAGACAAAGATGTT+TGG | - | chr7_4:56235009-56235028 | Msa1164530:three_prime_UTR | 35.0% | |
| TGAAAGAGAGAAAGATGGAA+TGG | + | chr7_4:56235044-56235063 | None:intergenic | 35.0% | |
| !! | TGCTTTGAAAGAGAGAAAGA+TGG | + | chr7_4:56235049-56235068 | None:intergenic | 35.0% |
| TTCTCTCTTTCAAAGCAAAC+AGG | - | chr7_4:56235052-56235071 | Msa1164530:CDS | 35.0% | |
| ! | AAGTGAAGGATAGAGTTTTC+AGG | - | chr7_4:56235173-56235192 | Msa1164530:intron | 35.0% |
| ! | AGTGAAGGATAGAGTTTTCA+GGG | - | chr7_4:56235174-56235193 | Msa1164530:intron | 35.0% |
| TGATGGAGATAGTAATCATG+GGG | - | chr7_4:56235342-56235361 | Msa1164530:CDS | 35.0% | |
| GCATAATTCCTCAGAAACAA+TGG | + | chr7_4:56235412-56235431 | None:intergenic | 35.0% | |
| GAGCTATACATTGAAACAGA+AGG | + | chr7_4:56235464-56235483 | None:intergenic | 35.0% | |
| ATACTAGCAGATCCAAATGA+CGG | - | chr7_4:56235722-56235741 | Msa1164530:CDS | 35.0% | |
| TTGTATTTGTACCTGTCATC+AGG | + | chr7_4:56235842-56235861 | None:intergenic | 35.0% | |
| ! | TTTAGATCGAGTTGCATACT+TGG | - | chr7_4:56235907-56235926 | Msa1164530:CDS | 35.0% |
| AATGTTGAGGCAAACATTGT+GGG | + | chr7_4:56236040-56236059 | None:intergenic | 35.0% | |
| AAATGTTGAGGCAAACATTG+TGG | + | chr7_4:56236041-56236060 | None:intergenic | 35.0% | |
| GCTCCAAAATGAAAATGTTG+AGG | + | chr7_4:56236053-56236072 | None:intergenic | 35.0% | |
| !!! | GCTATCAGCATTTTTTTCTC+AGG | + | chr7_4:56236116-56236135 | None:intergenic | 35.0% |
| AGCATATTCTGATGCACATA+AGG | - | chr7_4:56236133-56236152 | Msa1164530:CDS | 35.0% | |
| ! | CAGTTCGTTGACTACTTAAA+TGG | + | chr7_4:56236275-56236294 | None:intergenic | 35.0% |
| CTTGTTCTTATCCGTTCATT+TGG | - | chr7_4:56236318-56236337 | Msa1164530:CDS | 35.0% | |
| !! | CTCGTTTTTCCTTCATAAGT+TGG | + | chr7_4:56236355-56236374 | None:intergenic | 35.0% |
| GAAGGAAAAACGAGATTACA+AGG | - | chr7_4:56236361-56236380 | Msa1164530:CDS | 35.0% | |
| ATACATTACAACCCTGATGA+TGG | + | chr7_4:56236414-56236433 | None:intergenic | 35.0% | |
| CCCTGAAGTAATTAAACACA+AGG | - | chr7_4:56236435-56236454 | Msa1164530:CDS | 35.0% | |
| CAAGATCAAAGTAATGGTTG+TGG | - | chr7_4:56236554-56236573 | Msa1164530:intron | 35.0% | |
| ATCAAAGTAATGGTTGTGGA+TGG | - | chr7_4:56236558-56236577 | Msa1164530:intron | 35.0% | |
| AGGAAGACTATTGTCTATGT+CGG | - | chr7_4:56236595-56236614 | Msa1164530:intron | 35.0% | |
| CCTCGTTTATGTCTCTTTAA+GGG | + | chr7_4:56236629-56236648 | None:intergenic | 35.0% | |
| ACCTCGTTTATGTCTCTTTA+AGG | + | chr7_4:56236630-56236649 | None:intergenic | 35.0% | |
| ! | GTAACTTTTCCAAGGTTAAC+TGG | + | chr7_4:56236687-56236706 | None:intergenic | 35.0% |
| ! | GCAATGCTTTTAGCAAATCT+TGG | + | chr7_4:56236709-56236728 | None:intergenic | 35.0% |
| AGCTGATATATTCGATAGAG+CGG | + | chr7_4:56236808-56236827 | None:intergenic | 35.0% | |
| GGTCAAATTGAACTAGTAGT+TGG | + | chr7_4:56236835-56236854 | None:intergenic | 35.0% | |
| ACGTGATTGTTACAGATTGT+AGG | + | chr7_4:56236856-56236875 | None:intergenic | 35.0% | |
| CGTCAAATTGTCTACAAGAT+AGG | - | chr7_4:56236873-56236892 | Msa1164530:five_prime_UTR | 35.0% | |
| AAATTGTCTACAAGATAGGC+TGG | - | chr7_4:56236877-56236896 | Msa1164530:five_prime_UTR | 35.0% | |
| !! | TTCAACTCAAGTTGGAGCAA+AGG | + | chr7_4:56234148-56234167 | None:intergenic | 40.0% |
| !! | TATTGAATGAGTGGTGGACA+AGG | + | chr7_4:56234198-56234217 | None:intergenic | 40.0% |
| GTGGCAAGTGGTTGATTATT+TGG | + | chr7_4:56234296-56234315 | None:intergenic | 40.0% | |
| AAGAGAATTGTAGTGGCAAG+TGG | + | chr7_4:56234308-56234327 | None:intergenic | 40.0% | |
| CAAGATCAGGTGATGAGAAT+TGG | + | chr7_4:56234419-56234438 | None:intergenic | 40.0% | |
| ATCACCTGATCTTGCTTCAA+GGG | - | chr7_4:56234425-56234444 | Msa1164530:three_prime_UTR | 40.0% | |
| GGACTCATCAGAATCTGAAA+AGG | - | chr7_4:56234446-56234465 | Msa1164530:three_prime_UTR | 40.0% | |
| ! | TTAGTGATGGAGAGAGGTAA+AGG | + | chr7_4:56234490-56234509 | None:intergenic | 40.0% |
| !! | TGGTTGATGATGATTGAGGA+TGG | + | chr7_4:56234626-56234645 | None:intergenic | 40.0% |
| GGATTCAGGATGAAGACTAT+GGG | + | chr7_4:56234747-56234766 | None:intergenic | 40.0% | |
| AGGATTCAGGATGAAGACTA+TGG | + | chr7_4:56234748-56234767 | None:intergenic | 40.0% | |
| CTTTCAAGATCAGCAATGGA+AGG | + | chr7_4:56234866-56234885 | None:intergenic | 40.0% | |
| AGTTCAATCTGAAGGGAACT+TGG | - | chr7_4:56234910-56234929 | Msa1164530:three_prime_UTR | 40.0% | |
| GAAAGATGGAATGGTCTCAA+GGG | + | chr7_4:56235035-56235054 | None:intergenic | 40.0% | |
| AGAAAGATGGAATGGTCTCA+AGG | + | chr7_4:56235036-56235055 | None:intergenic | 40.0% | |
| AGTAGTGTGCTGAATAGTAC+TGG | - | chr7_4:56235127-56235146 | Msa1164530:CDS | 40.0% | |
| GGTGGTAAATGATGAAGTGA+AGG | - | chr7_4:56235159-56235178 | Msa1164530:intron | 40.0% | |
| !! | TTTCAGGGTGAGTTTTGATG+AGG | - | chr7_4:56235189-56235208 | Msa1164530:intron | 40.0% |
| ATGTATCTTGCAAAGGGACT+TGG | - | chr7_4:56235235-56235254 | Msa1164530:intron | 40.0% | |
| AGGTGGTGATTATAGTTCCA+TGG | - | chr7_4:56235306-56235325 | Msa1164530:CDS | 40.0% | |
| GGTGGTGATTATAGTTCCAT+GGG | - | chr7_4:56235307-56235326 | Msa1164530:CDS | 40.0% | |
| GATTATAGTTCCATGGGTTC+TGG | - | chr7_4:56235313-56235332 | Msa1164530:CDS | 40.0% | |
| AAAATGGTTCAGCAAAACCC+TGG | - | chr7_4:56235382-56235401 | Msa1164530:CDS | 40.0% | |
| AAATGGTTCAGCAAAACCCT+GGG | - | chr7_4:56235383-56235402 | Msa1164530:CDS | 40.0% | |
| AATATTCCTCTGCTCCTTCA+CGG | + | chr7_4:56235691-56235710 | None:intergenic | 40.0% | |
| GTCATTTGGATCTGCTAGTA+TGG | + | chr7_4:56235723-56235742 | None:intergenic | 40.0% | |
| GAGAAGTTCTGTCACAGTAT+GGG | - | chr7_4:56235744-56235763 | Msa1164530:CDS | 40.0% | |
| TACTGCTCGTTCAAAATAGC+TGG | + | chr7_4:56235810-56235829 | None:intergenic | 40.0% | |
| GCAACTAAACAATGCTCTGA+TGG | - | chr7_4:56236472-56236491 | Msa1164530:exon | 40.0% | |
| ! | ACGCGTAGCTTACAAAGTTT+TGG | + | chr7_4:56236498-56236517 | None:intergenic | 40.0% |
| GTAATGGTTGTGGATGGTTT+AGG | - | chr7_4:56236564-56236583 | Msa1164530:intron | 40.0% | |
| CCCTTAAAGAGACATAAACG+AGG | - | chr7_4:56236626-56236645 | Msa1164530:intron | 40.0% | |
| ! | CCAAGGTTAACTGGCTTAAT+TGG | + | chr7_4:56236678-56236697 | None:intergenic | 40.0% |
| CCAATTAAGCCAGTTAACCT+TGG | - | chr7_4:56236675-56236694 | Msa1164530:five_prime_UTR | 40.0% | |
| TCCAGTACAACACAGAACTA+GGG | - | chr7_4:56236781-56236800 | Msa1164530:five_prime_UTR | 40.0% | |
| TCAGGTGATGAGAATTGGAC+AGG | + | chr7_4:56234414-56234433 | None:intergenic | 45.0% | |
| CATCACCTGATCTTGCTTCA+AGG | - | chr7_4:56234424-56234443 | Msa1164530:three_prime_UTR | 45.0% | |
| AGCTCTTCAACACCAGTTCT+TGG | - | chr7_4:56234668-56234687 | Msa1164530:three_prime_UTR | 45.0% | |
| GATAGGAGAGAACCAAGAAC+TGG | + | chr7_4:56234683-56234702 | None:intergenic | 45.0% | |
| GGTTCTCTCCTATCTTCTTC+CGG | - | chr7_4:56234689-56234708 | Msa1164530:three_prime_UTR | 45.0% | |
| TGAAGGAACCGGAAGAAGAT+AGG | + | chr7_4:56234700-56234719 | None:intergenic | 45.0% | |
| AGGACTATCTGTGAAGGAAC+CGG | + | chr7_4:56234711-56234730 | None:intergenic | 45.0% | |
| ! | ATGATGATGTTGGAGCGAAG+TGG | + | chr7_4:56234801-56234820 | None:intergenic | 45.0% |
| TCAGCAATGGAAGGAGAGAT+TGG | + | chr7_4:56234857-56234876 | None:intergenic | 45.0% | |
| !! | AGGGTGAGTTTTGATGAGGA+GGG | - | chr7_4:56235193-56235212 | Msa1164530:intron | 45.0% |
| !! | GATGTGAGTGGTGATGGTAT+AGG | - | chr7_4:56235262-56235281 | Msa1164530:intron | 45.0% |
| ! | TATAGTTCCATGGGTTCTGG+AGG | - | chr7_4:56235316-56235335 | Msa1164530:CDS | 45.0% |
| !! | ATAGTTCCATGGGTTCTGGA+GGG | - | chr7_4:56235317-56235336 | Msa1164530:CDS | 45.0% |
| TGGAGATAGTAATCATGGGG+TGG | - | chr7_4:56235345-56235364 | Msa1164530:CDS | 45.0% | |
| ! | TCAGAAACAATGGGTTCCCA+GGG | + | chr7_4:56235402-56235421 | None:intergenic | 45.0% |
| GACAGAACTTCTCCGTCATT+TGG | + | chr7_4:56235737-56235756 | None:intergenic | 45.0% | |
| GGAGAAGTTCTGTCACAGTA+TGG | - | chr7_4:56235743-56235762 | Msa1164530:CDS | 45.0% | |
| ! | ACAGTATGGGAAGCTGGTTT+GGG | - | chr7_4:56235757-56235776 | Msa1164530:CDS | 45.0% |
| TACAAGCTTCTCCTGATGAC+AGG | - | chr7_4:56235828-56235847 | Msa1164530:CDS | 45.0% | |
| CCAAAGGAAACTTGCATACG+CGG | + | chr7_4:56235982-56236001 | None:intergenic | 45.0% | |
| CGCGTATGCAAGTTTCCTTT+GGG | - | chr7_4:56235980-56235999 | Msa1164530:CDS | 45.0% | |
| !! | AAGTTTCCTTTGGGACACAG+AGG | - | chr7_4:56235989-56236008 | Msa1164530:CDS | 45.0% |
| ! | TTTGGAGCTATGGCAACTAC+AGG | - | chr7_4:56236065-56236084 | Msa1164530:CDS | 45.0% |
| GAGAACCAGAAATCACAAGC+CGG | - | chr7_4:56236186-56236205 | Msa1164530:CDS | 45.0% | |
| AGAACCAGAAATCACAAGCC+GGG | - | chr7_4:56236187-56236206 | Msa1164530:CDS | 45.0% | |
| CTCCAGTACAACACAGAACT+AGG | - | chr7_4:56236780-56236799 | Msa1164530:five_prime_UTR | 45.0% | |
| !! | TCCCTAGTTCTGTGTTGTAC+TGG | + | chr7_4:56236785-56236804 | None:intergenic | 45.0% |
| GAGTCCCTTGAAGCAAGATC+AGG | + | chr7_4:56234432-56234451 | None:intergenic | 50.0% | |
| TGATGTTGGAGCGAAGTGGT+TGG | + | chr7_4:56234797-56234816 | None:intergenic | 50.0% | |
| !! | GTGCTGAATAGTACTGGCAG+TGG | - | chr7_4:56235133-56235152 | Msa1164530:CDS | 50.0% |
| !! | GAATAGTACTGGCAGTGGTG+TGG | - | chr7_4:56235138-56235157 | Msa1164530:CDS | 50.0% |
| !! | CAGGGTGAGTTTTGATGAGG+AGG | - | chr7_4:56235192-56235211 | Msa1164530:intron | 50.0% |
| !! | GAGTTTTGATGAGGAGGGAC+AGG | - | chr7_4:56235198-56235217 | Msa1164530:intron | 50.0% |
| TTTGATGAGGAGGGACAGGT+TGG | - | chr7_4:56235202-56235221 | Msa1164530:intron | 50.0% | |
| !! | GGACTTGGTGTTGATGTGAG+TGG | - | chr7_4:56235250-56235269 | Msa1164530:intron | 50.0% |
| !! | GGTGTTGATGTGAGTGGTGA+TGG | - | chr7_4:56235256-56235275 | Msa1164530:intron | 50.0% |
| !! | GTGAGTGGTGATGGTATAGG+TGG | - | chr7_4:56235265-56235284 | Msa1164530:intron | 50.0% |
| ATCATTCCCTCCAGAACCCA+TGG | + | chr7_4:56235326-56235345 | None:intergenic | 50.0% | |
| !! | ATGGGTTCTGGAGGGAATGA+TGG | - | chr7_4:56235325-56235344 | Msa1164530:CDS | 50.0% |
| ! | CTCAGAAACAATGGGTTCCC+AGG | + | chr7_4:56235403-56235422 | None:intergenic | 50.0% |
| !! | CTGGGAACCCATTGTTTCTG+AGG | - | chr7_4:56235401-56235420 | Msa1164530:CDS | 50.0% |
| CAGTGCAAACAAGACCGTGA+AGG | - | chr7_4:56235674-56235693 | Msa1164530:intron | 50.0% | |
| TGGATCTGCTAGTATGGCTC+TGG | + | chr7_4:56235717-56235736 | None:intergenic | 50.0% | |
| TCTGTCACAGTATGGGAAGC+TGG | - | chr7_4:56235751-56235770 | Msa1164530:CDS | 50.0% | |
| CACAGTATGGGAAGCTGGTT+TGG | - | chr7_4:56235756-56235775 | Msa1164530:CDS | 50.0% | |
| CCGCGTATGCAAGTTTCCTT+TGG | - | chr7_4:56235979-56235998 | Msa1164530:CDS | 50.0% | |
| ! | GAAACCCGGCTTGTGATTTC+TGG | + | chr7_4:56236194-56236213 | None:intergenic | 50.0% |
| ! | GGATGGTTTAGGATCAGAGC+AGG | - | chr7_4:56236575-56236594 | Msa1164530:intron | 50.0% |
| TGTTGGAGCGAAGTGGTTGG+TGG | + | chr7_4:56234794-56234813 | None:intergenic | 55.0% | |
| !! | TAGTACTGGCAGTGGTGTGG+TGG | - | chr7_4:56235141-56235160 | Msa1164530:CDS | 55.0% |
| GATGGTATAGGTGGCTGCAG+AGG | - | chr7_4:56235274-56235293 | Msa1164530:intron | 55.0% | |
| GTATAGGTGGCTGCAGAGGA+GGG | - | chr7_4:56235278-56235297 | Msa1164530:intron | 55.0% | |
| ACAAGACCGTGAAGGAGCAG+AGG | - | chr7_4:56235682-56235701 | Msa1164530:intron | 55.0% | |
| CGTCTTCCTCTGTGTCCCAA+AGG | + | chr7_4:56235998-56236017 | None:intergenic | 55.0% | |
| TTGGGACACAGAGGAAGACG+AGG | - | chr7_4:56235998-56236017 | Msa1164530:CDS | 55.0% | |
| ACAGAGGAAGACGAGGATGC+AGG | - | chr7_4:56236005-56236024 | Msa1164530:CDS | 55.0% | |
| CCGACACTGCAACAGAAACC+CGG | + | chr7_4:56236208-56236227 | None:intergenic | 55.0% | |
| CCGGGTTTCTGTTGCAGTGT+CGG | - | chr7_4:56236205-56236224 | Msa1164530:CDS | 55.0% | |
| !! | TGGAGCGAAGTGGTTGGTGG+TGG | + | chr7_4:56234791-56234810 | None:intergenic | 60.0% |
| GGTATAGGTGGCTGCAGAGG+AGG | - | chr7_4:56235277-56235296 | Msa1164530:intron | 60.0% | |
| TGCAGAGGAGGGAATGGAGG+TGG | - | chr7_4:56235289-56235308 | Msa1164530:CDS | 60.0% | |
| GGTGGCTGCAGAGGAGGGAA+TGG | - | chr7_4:56235283-56235302 | Msa1164530:CDS | 65.0% | |
| GGCTGCAGAGGAGGGAATGG+AGG | - | chr7_4:56235286-56235305 | Msa1164530:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 56234135 | 56236996 | 56234135 | ID=Msa1164530;Name=Msa1164530 |
| chr7_4 | mRNA | 56234135 | 56236996 | 56234135 | ID=Msa1164530-mRNA-1;Parent=Msa1164530;Name=Msa1164530-mRNA-1;_AED=0.00;_eAED=0.00;_QI=420|1|1|1|0.66|0.5|4|902|363 |
| chr7_4 | exon | 56234135 | 56235163 | 56234135 | ID=Msa1164530-mRNA-1:exon:16766;Parent=Msa1164530-mRNA-1 |
| chr7_4 | exon | 56235282 | 56235454 | 56235282 | ID=Msa1164530-mRNA-1:exon:16765;Parent=Msa1164530-mRNA-1 |
| chr7_4 | exon | 56235684 | 56236561 | 56235684 | ID=Msa1164530-mRNA-1:exon:16764;Parent=Msa1164530-mRNA-1 |
| chr7_4 | exon | 56236663 | 56236996 | 56236663 | ID=Msa1164530-mRNA-1:exon:16763;Parent=Msa1164530-mRNA-1 |
| chr7_4 | five_prime_UTR | 56236663 | 56236996 | 56236663 | ID=Msa1164530-mRNA-1:five_prime_utr;Parent=Msa1164530-mRNA-1 |
| chr7_4 | five_prime_UTR | 56236476 | 56236561 | 56236476 | ID=Msa1164530-mRNA-1:five_prime_utr;Parent=Msa1164530-mRNA-1 |
| chr7_4 | CDS | 56235684 | 56236475 | 56235684 | ID=Msa1164530-mRNA-1:cds;Parent=Msa1164530-mRNA-1 |
| chr7_4 | CDS | 56235282 | 56235454 | 56235282 | ID=Msa1164530-mRNA-1:cds;Parent=Msa1164530-mRNA-1 |
| chr7_4 | CDS | 56235037 | 56235163 | 56235037 | ID=Msa1164530-mRNA-1:cds;Parent=Msa1164530-mRNA-1 |
| chr7_4 | three_prime_UTR | 56234135 | 56235036 | 56234135 | ID=Msa1164530-mRNA-1:three_prime_utr;Parent=Msa1164530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
