AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0004610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004610 MtrunA17_Chr1g0157081 88.787 767 43 4 23 747 23 788 0.0 1394
Msa0004610 MtrunA17_Chr1g0210801 25.067 371 260 8 135 502 123 478 9.47e-23 103
Msa0004610 MtrunA17_Chr1g0210801 23.588 301 218 5 219 517 133 423 1.54e-14 77.4
Msa0004610 MtrunA17_Chr3g0136851 22.923 349 253 6 159 505 280 614 9.21e-17 85.1
Msa0004610 MtrunA17_Chr3g0136851 23.864 352 254 6 140 490 331 669 1.07e-12 72.0
Msa0004610 MtrunA17_Chr3g0143411 23.026 304 220 6 155 457 149 439 1.04e-15 80.9
Msa0004610 MtrunA17_Chr3g0126821 26.333 300 203 7 182 474 204 492 2.39e-15 80.1
Msa0004610 MtrunA17_Chr4g0038401 22.449 343 248 7 171 510 310 637 6.27e-15 79.0
Msa0004610 MtrunA17_Chr1g0211881 27.273 198 131 5 140 337 306 490 3.76e-14 75.9
Msa0004610 MtrunA17_Chr8g0375231 23.697 422 271 12 158 537 263 675 6.44e-14 75.5
Msa0004610 MtrunA17_Chr8g0375231 22.857 280 173 6 273 513 226 501 8.57e-12 68.9
Msa0004610 MtrunA17_Chr3g0099661 22.924 301 219 6 171 470 509 797 6.83e-14 75.5
Msa0004610 MtrunA17_Chr6g0482571 22.112 303 215 6 203 490 58 354 6.88e-14 74.3
Msa0004610 MtrunA17_Chr6g0473351 23.636 330 227 8 178 502 86 395 1.01e-13 74.7
Msa0004610 MtrunA17_Chr3g0091741 21.429 350 220 7 165 466 139 481 1.03e-13 74.7
Msa0004610 MtrunA17_Chr1g0160881 22.086 326 240 7 161 485 289 601 1.24e-13 74.7
Msa0004610 MtrunA17_Chr1g0160881 21.448 373 240 7 170 504 193 550 3.06e-11 67.0
Msa0004610 MtrunA17_Chr6g0473331 23.939 330 229 8 178 502 124 436 1.28e-13 74.3
Msa0004610 MtrunA17_Chr7g0218641 22.857 350 252 7 203 550 215 548 1.29e-13 74.3
Msa0004610 MtrunA17_Chr2g0304071 22.039 363 245 8 171 502 213 568 1.31e-13 74.7
Msa0004610 MtrunA17_Chr2g0304071 23.773 387 254 12 132 504 491 850 1.47e-13 74.7
Msa0004610 MtrunA17_Chr2g0292711 23.389 419 246 14 140 494 214 621 1.53e-13 74.3
Msa0004610 MtrunA17_Chr1g0147171 23.547 327 233 8 179 502 174 486 1.59e-13 74.3
Msa0004610 MtrunA17_Chr1g0211431 25.938 320 218 8 163 474 182 490 2.28e-13 73.6
Msa0004610 MtrunA17_Chr6g0473431 22.492 329 232 8 178 502 89 398 2.72e-13 73.2
Msa0004610 MtrunA17_Chr6g0482541 21.379 290 215 6 203 490 58 336 3.24e-13 72.0
Msa0004610 MtrunA17_Chr4g0037841 23.611 360 204 12 123 467 242 545 3.59e-13 72.8
Msa0004610 MtrunA17_Chr4g0037841 22.400 375 269 11 128 495 142 501 4.85e-11 66.2
Msa0004610 MtrunA17_Chr6g0473251 21.053 304 225 6 203 502 36 328 3.70e-13 72.8
Msa0004610 MtrunA17_Chr6g0473251 22.531 324 202 7 178 466 86 395 1.55e-11 67.8
Msa0004610 MtrunA17_Chr6g0478551 20.755 318 222 9 193 500 29 326 4.07e-13 72.8
Msa0004610 MtrunA17_Chr2g0285331 22.321 336 233 9 129 455 177 493 4.21e-13 73.2
Msa0004610 MtrunA17_Chr8g0369641 23.662 355 246 10 155 502 321 657 4.91e-13 72.8
Msa0004610 MtrunA17_Chr6g0473491 23.810 294 203 7 178 466 86 363 4.92e-13 72.4
Msa0004610 MtrunA17_Chr5g0396041 22.222 306 223 5 165 467 280 573 7.55e-13 72.4
Msa0004610 MtrunA17_Chr7g0257371 22.572 381 267 8 140 511 176 537 1.01e-12 72.0
Msa0004610 MtrunA17_Chr2g0297991 24.561 228 149 5 246 463 254 468 2.13e-12 70.9
Msa0004610 MtrunA17_Chr8g0390501 22.084 403 275 11 149 546 123 491 2.46e-12 70.5
Msa0004610 MtrunA17_Chr7g0241721 22.687 335 237 10 182 511 20 337 3.02e-12 70.1
Msa0004610 MtrunA17_Chr7g0241721 22.312 372 257 14 126 486 67 417 6.84e-11 65.9
Msa0004610 MtrunA17_Chr4g0060341 23.333 360 205 12 123 467 242 545 3.41e-12 69.7
Msa0004610 MtrunA17_Chr4g0060341 22.400 375 269 11 128 495 142 501 9.52e-11 65.1
Msa0004610 MtrunA17_Chr8g0391651 24.554 224 161 4 283 502 294 513 3.82e-12 70.1
Msa0004610 MtrunA17_Chr1g0182521 24.925 333 228 8 175 502 158 473 4.16e-12 69.7
Msa0004610 MtrunA17_Chr8g0392911 21.287 404 248 10 171 510 77 474 4.35e-12 69.7
Msa0004610 MtrunA17_Chr1g0193151 22.878 271 192 7 217 484 158 414 4.39e-12 69.7
Msa0004610 MtrunA17_Chr6g0478691 23.467 375 253 15 176 544 95 441 4.50e-12 69.7
Msa0004610 MtrunA17_Chr6g0473481 22.789 294 206 7 178 466 86 363 4.51e-12 69.3
Msa0004610 MtrunA17_Chr6g0473511 22.789 294 206 7 178 466 86 363 4.51e-12 69.3
Msa0004610 MtrunA17_Chr6g0473441 23.154 298 200 8 178 466 86 363 5.06e-12 69.3
Msa0004610 MtrunA17_Chr6g0473261 22.789 294 206 7 178 466 134 411 5.43e-12 69.3
Msa0004610 MtrunA17_Chr5g0395201 20.968 372 264 9 114 466 457 817 6.00e-12 69.3
Msa0004610 MtrunA17_Chr7g0215561 23.667 300 213 8 170 466 296 582 6.69e-12 68.9
Msa0004610 MtrunA17_Chr1g0148281 24.399 291 174 7 218 505 160 407 1.01e-11 68.2
Msa0004610 MtrunA17_Chr6g0482971 24.161 298 198 9 178 466 82 360 1.01e-11 68.2
Msa0004610 MtrunA17_Chr7g0214351 22.742 299 217 6 170 466 297 583 1.08e-11 68.6
Msa0004610 MtrunA17_Chr1g0190191 22.626 358 257 10 132 485 141 482 1.62e-11 67.8
Msa0004610 MtrunA17_Chr6g0482771 22.491 289 214 5 203 490 107 386 1.73e-11 67.4
Msa0004610 MtrunA17_Chr1g0200211 21.652 351 261 7 161 510 258 595 1.91e-11 67.8
Msa0004610 MtrunA17_Chr6g0471531 22.468 316 234 5 203 517 235 540 1.92e-11 67.4
Msa0004610 MtrunA17_Chr4g0048611 23.077 351 240 11 171 511 138 468 1.93e-11 67.8
Msa0004610 MtrunA17_Chr7g0246931 23.948 309 225 6 200 507 223 522 1.97e-11 67.4
Msa0004610 MtrunA17_Chr6g0482751 21.951 328 242 6 178 504 91 405 1.99e-11 67.4
Msa0004610 MtrunA17_Chr8g0381361 20.513 351 252 9 159 502 125 455 2.05e-11 67.0
Msa0004610 MtrunA17_Chr1g0170071 21.970 396 277 8 109 502 279 644 2.59e-11 67.4
Msa0004610 MtrunA17_Chr1g0168761 23.292 322 225 9 186 502 86 390 2.65e-11 67.0
Msa0004610 MtrunA17_Chr8g0368891 20.732 328 201 10 155 476 387 661 3.27e-11 66.6
Msa0004610 MtrunA17_Chr4g0033981 21.039 385 275 9 122 502 199 558 3.99e-11 66.6
Msa0004610 MtrunA17_Chr4g0033981 21.131 336 251 6 132 466 271 593 4.02e-11 66.6
Msa0004610 MtrunA17_Chr4g0033981 22.846 267 189 7 162 427 370 620 6.57e-11 65.9
Msa0004610 MtrunA17_Chr3g0085871 21.667 300 217 6 132 429 137 420 4.78e-11 66.2
Msa0004610 MtrunA17_Chr3g0102961 24.658 219 155 5 291 504 129 342 5.29e-11 65.9
Msa0004610 MtrunA17_Chr6g0481621 20.402 348 257 8 155 498 231 562 6.09e-11 65.9
Msa0004610 MtrunA17_Chr4g0039041 21.250 320 227 8 155 467 435 736 6.66e-11 65.9
Msa0004610 MtrunA17_Chr6g0481751 22.156 334 240 9 170 499 143 460 6.83e-11 65.5
Msa0004610 MtrunA17_Chr4g0052491 20.942 382 281 8 92 466 121 488 7.34e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004610 AT2G15820.1 50.374 802 319 9 20 746 39 836 0.0 780
Msa0004610 AT2G35130.3 21.585 366 274 6 135 499 141 494 3.36e-16 83.2
Msa0004610 AT5G61990.1 23.239 426 297 12 108 517 545 956 1.48e-15 81.6
Msa0004610 AT2G35130.2 21.409 369 274 7 135 499 163 519 4.32e-15 79.7
Msa0004610 AT1G09680.1 24.188 277 198 4 137 413 298 562 4.70e-15 79.3
Msa0004610 AT1G09680.1 21.068 337 248 7 161 494 252 573 1.09e-12 72.0
Msa0004610 AT1G09680.1 20.681 382 259 7 136 510 105 449 1.24e-11 68.6
Msa0004610 AT2G35130.1 21.409 369 274 7 135 499 141 497 5.76e-15 79.3
Msa0004610 AT5G64320.1 21.884 329 238 8 164 490 302 613 1.50e-14 78.2
Msa0004610 AT1G63400.1 21.892 370 264 10 140 504 181 530 1.76e-14 77.4
Msa0004610 AT5G04810.1 21.448 359 263 8 146 502 309 650 5.77e-14 76.3
Msa0004610 AT5G04810.2 21.448 359 263 8 146 502 309 650 7.57e-14 75.9
Msa0004610 AT4G20090.2 22.156 334 243 7 155 484 263 583 1.32e-13 75.1
Msa0004610 AT4G20090.1 22.156 334 243 7 155 484 263 583 1.32e-13 75.1
Msa0004610 AT1G63130.1 23.460 341 232 11 171 504 208 526 1.33e-13 74.7
Msa0004610 AT1G63130.2 23.460 341 232 11 171 504 208 526 1.33e-13 74.7
Msa0004610 AT3G54980.1 22.691 379 258 11 131 505 266 613 1.58e-13 75.1
Msa0004610 AT3G54980.2 22.691 379 258 11 131 505 266 613 1.58e-13 75.1
Msa0004610 AT3G16710.1 22.078 308 214 9 203 503 169 457 1.71e-13 74.3
Msa0004610 AT2G17140.1 23.120 359 252 9 161 511 124 466 3.07e-13 73.9
Msa0004610 AT2G17140.1 22.552 337 247 7 169 502 167 492 5.60e-13 73.2
Msa0004610 AT2G17140.2 23.120 359 252 9 161 511 124 466 3.07e-13 73.9
Msa0004610 AT2G17140.2 22.552 337 247 7 169 502 167 492 5.60e-13 73.2
Msa0004610 AT1G20300.1 23.138 376 265 11 155 525 157 513 3.77e-13 73.2
Msa0004610 AT1G31840.1 22.812 320 228 8 203 517 512 817 3.82e-13 73.6
Msa0004610 AT3G18110.1 23.301 309 225 5 164 470 240 538 5.21e-13 73.6
Msa0004610 AT5G55840.2 22.306 399 275 11 114 504 310 681 5.65e-13 73.2
Msa0004610 AT5G55840.1 22.306 399 275 11 114 504 310 681 5.65e-13 73.2
Msa0004610 AT5G55840.3 22.306 399 275 11 114 504 270 641 5.87e-13 73.2
Msa0004610 AT3G48810.1 26.119 268 170 9 246 502 128 378 6.47e-13 72.8
Msa0004610 AT5G02860.1 23.028 317 230 7 171 486 476 779 8.30e-13 72.4
Msa0004610 AT5G02860.4 23.028 317 230 7 171 486 476 779 8.30e-13 72.4
Msa0004610 AT5G02860.2 23.028 317 230 7 171 486 476 779 8.30e-13 72.4
Msa0004610 AT5G02860.5 23.028 317 230 7 171 486 476 779 8.30e-13 72.4
Msa0004610 AT5G02860.3 23.028 317 230 7 171 486 476 779 8.30e-13 72.4
Msa0004610 AT1G06710.7 23.200 375 214 9 152 502 341 665 1.22e-12 72.0
Msa0004610 AT1G06710.7 22.287 341 233 10 164 486 463 789 7.23e-12 69.7
Msa0004610 AT1G06710.1 23.200 375 214 9 152 502 341 665 1.22e-12 72.0
Msa0004610 AT1G06710.1 22.287 341 233 10 164 486 463 789 7.23e-12 69.7
Msa0004610 AT1G06710.9 23.200 375 214 9 152 502 341 665 1.22e-12 72.0
Msa0004610 AT1G06710.9 22.287 341 233 10 164 486 463 789 7.23e-12 69.7
Msa0004610 AT1G06710.4 23.200 375 214 9 152 502 341 665 1.22e-12 72.0
Msa0004610 AT1G06710.4 22.287 341 233 10 164 486 463 789 7.23e-12 69.7
Msa0004610 AT1G06710.13 23.200 375 214 9 152 502 341 665 1.22e-12 72.0
Msa0004610 AT1G06710.13 22.287 341 233 10 164 486 463 789 7.23e-12 69.7
Msa0004610 AT1G06710.3 23.200 375 214 9 152 502 341 665 1.22e-12 72.0
Msa0004610 AT1G06710.3 22.287 341 233 10 164 486 463 789 7.23e-12 69.7
Msa0004610 AT1G06710.8 23.200 375 214 9 152 502 341 665 1.22e-12 72.0
Msa0004610 AT1G06710.8 22.287 341 233 10 164 486 463 789 7.23e-12 69.7
Msa0004610 AT1G06710.2 23.200 375 214 9 152 502 341 665 1.22e-12 72.0
Msa0004610 AT1G06710.2 22.287 341 233 10 164 486 463 789 7.23e-12 69.7
Msa0004610 AT1G06710.19 23.200 375 214 9 152 502 341 665 1.22e-12 72.0
Msa0004610 AT1G06710.19 22.287 341 233 10 164 486 463 789 7.23e-12 69.7
Msa0004610 AT1G06710.5 23.200 375 214 9 152 502 341 665 1.22e-12 72.0
Msa0004610 AT1G06710.5 22.287 341 233 10 164 486 463 789 7.23e-12 69.7
Msa0004610 AT1G06710.6 23.200 375 214 9 152 502 341 665 1.22e-12 72.0
Msa0004610 AT1G06710.6 22.287 341 233 10 164 486 463 789 7.23e-12 69.7
Msa0004610 AT1G06710.12 23.200 375 214 9 152 502 341 665 1.22e-12 72.0
Msa0004610 AT1G06710.12 22.287 341 233 10 164 486 463 789 7.23e-12 69.7
Msa0004610 AT1G06710.15 23.200 375 214 9 152 502 341 665 1.51e-12 72.0
Msa0004610 AT1G06710.15 22.287 341 233 10 164 486 463 789 7.85e-12 69.7
Msa0004610 AT1G06710.18 23.200 375 214 9 152 502 341 665 1.51e-12 72.0
Msa0004610 AT1G06710.18 22.287 341 233 10 164 486 463 789 7.85e-12 69.7
Msa0004610 AT1G06710.17 23.200 375 214 9 152 502 341 665 1.51e-12 72.0
Msa0004610 AT1G06710.17 22.287 341 233 10 164 486 463 789 7.85e-12 69.7
Msa0004610 AT1G06710.14 23.200 375 214 9 152 502 341 665 1.51e-12 72.0
Msa0004610 AT1G06710.14 22.287 341 233 10 164 486 463 789 7.85e-12 69.7
Msa0004610 AT1G06710.16 23.200 375 214 9 152 502 341 665 1.51e-12 72.0
Msa0004610 AT1G06710.16 22.287 341 233 10 164 486 463 789 7.85e-12 69.7
Msa0004610 AT1G06710.10 23.200 375 214 9 152 502 341 665 1.51e-12 72.0
Msa0004610 AT1G06710.10 22.287 341 233 10 164 486 463 789 7.85e-12 69.7
Msa0004610 AT1G06710.11 23.200 375 214 9 152 502 341 665 1.51e-12 72.0
Msa0004610 AT1G06710.11 22.287 341 233 10 164 486 463 789 7.85e-12 69.7
Msa0004610 AT2G31400.1 22.910 323 236 7 151 472 235 545 2.61e-12 71.2
Msa0004610 AT2G31400.2 22.910 323 236 7 151 472 235 545 3.02e-12 70.9
Msa0004610 AT1G62590.2 22.581 372 259 11 140 504 181 530 3.12e-12 70.5
Msa0004610 AT1G62590.1 22.581 372 259 11 140 504 181 530 3.12e-12 70.5
Msa0004610 AT1G12775.1 21.222 311 234 5 201 510 277 577 3.72e-12 70.1
Msa0004610 AT5G41170.2 21.726 336 244 8 179 510 137 457 5.18e-12 69.3
Msa0004610 AT5G41170.3 21.726 336 244 8 179 510 37 357 5.32e-12 68.9
Msa0004610 AT1G13040.2 22.414 348 255 8 157 502 122 456 5.73e-12 69.3
Msa0004610 AT1G13040.1 22.414 348 255 8 157 502 122 456 5.73e-12 69.3
Msa0004610 AT5G41170.1 21.726 336 244 8 179 510 137 457 5.75e-12 69.3
Msa0004610 AT1G12620.1 20.130 308 227 6 200 502 260 553 6.73e-12 69.3
Msa0004610 AT1G63330.3 22.312 372 260 11 140 504 106 455 7.67e-12 68.9
Msa0004610 AT1G63330.1 22.312 372 260 11 140 504 106 455 7.67e-12 68.9
Msa0004610 AT1G63330.2 22.312 372 260 11 140 504 106 455 7.67e-12 68.9
Msa0004610 AT3G16710.2 21.379 290 205 8 203 485 169 442 9.79e-12 68.6
Msa0004610 AT3G53700.1 21.471 340 240 7 171 502 211 531 1.06e-11 68.9
Msa0004610 AT4G19440.4 22.316 354 257 7 150 500 484 822 1.13e-11 68.9
Msa0004610 AT4G19440.2 22.316 354 257 7 150 500 484 822 1.13e-11 68.9
Msa0004610 AT4G19440.3 22.316 354 257 7 150 500 484 822 1.13e-11 68.9
Msa0004610 AT4G19440.1 22.316 354 257 7 150 500 484 822 1.13e-11 68.9
Msa0004610 AT4G39620.2 22.333 300 218 7 206 499 116 406 1.43e-11 68.2
Msa0004610 AT2G15630.1 21.914 324 226 6 167 482 310 614 1.78e-11 68.2
Msa0004610 AT1G03560.1 21.480 419 304 9 146 551 180 586 1.88e-11 68.2
Msa0004610 AT5G01110.1 22.419 339 243 8 161 495 317 639 1.89e-11 68.2
Msa0004610 AT5G01110.2 22.419 339 243 8 161 495 345 667 2.09e-11 68.2
Msa0004610 AT4G39620.1 22.581 279 205 6 227 499 133 406 2.40e-11 67.4
Msa0004610 AT1G66345.1 20.120 333 252 6 171 502 221 540 2.47e-11 67.4
Msa0004610 AT1G09820.1 22.071 367 254 10 135 490 210 555 3.43e-11 67.0
Msa0004610 AT5G28370.1 21.212 231 175 2 266 495 447 671 4.06e-11 67.0
Msa0004610 AT3G61520.1 21.212 231 175 2 266 495 447 671 4.88e-11 67.0
Msa0004610 AT1G62670.2 20.317 379 245 11 164 502 201 562 5.22e-11 66.6
Msa0004610 AT1G62670.1 20.317 379 245 11 164 502 201 562 5.22e-11 66.6
Msa0004610 AT3G22470.2 21.785 381 266 11 139 504 127 490 5.87e-11 66.2
Msa0004610 AT5G28460.1 21.212 231 175 2 266 495 447 671 5.94e-11 66.6
Msa0004610 AT4G31850.1 23.099 355 253 8 140 490 319 657 6.75e-11 66.6
Msa0004610 AT1G62680.1 21.498 307 219 9 203 504 171 460 8.45e-11 65.9
Msa0004610 AT1G62680.2 21.498 307 219 9 203 504 171 460 8.45e-11 65.9
Msa0004610 AT1G74900.1 24.340 341 220 13 182 505 124 443 8.50e-11 65.5

Find 195 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGAGAGGTTAGGGTTTA+AGG 0.082041 1_1:-7092923 None:intergenic
CATCAATTTCATACTTATTT+TGG 0.134963 1_1:-7095238 None:intergenic
GGTATTCTGGATTGGTATTC+TGG 0.195897 1_1:+7095805 Msa0004610:CDS
ATATTTATGGTGGCCTAATT+TGG 0.196709 1_1:+7094523 Msa0004610:CDS
TACAACTTGGTTCTGGAAAT+TGG 0.196797 1_1:+7095835 Msa0004610:CDS
ACCATTGCAAGCTCTCATTT+TGG 0.235787 1_1:+7095557 Msa0004610:CDS
AGAGAAATGAAGTTGAAATT+AGG 0.236285 1_1:+7094807 Msa0004610:CDS
TGAAATTGATGCCCCATTAA+TGG 0.248077 1_1:+7095250 Msa0004610:CDS
TTCTATTCTTTCTTTGTCTA+TGG 0.251309 1_1:-7094565 None:intergenic
TATGGAATCACATGATAAAT+TGG 0.256096 1_1:+7094983 Msa0004610:CDS
CATGATTGATTCTGCAAATT+CGG 0.273446 1_1:-7094889 None:intergenic
ACTAAACATGTACTTCAATA+TGG 0.284965 1_1:+7094965 Msa0004610:CDS
CACCTTGTGTTCTTGCATAC+TGG 0.289141 1_1:+7095648 Msa0004610:CDS
GATAGCTATGCAGCCAAATT+AGG 0.290210 1_1:-7094536 None:intergenic
TAGTATATATTTAGATTCTT+TGG 0.296485 1_1:+7095058 Msa0004610:CDS
GCTTTCAAACTGCAAAAGTT+TGG 0.303946 1_1:-7094703 None:intergenic
TTCTTCTGTTCAAGGTTGTT+TGG 0.305268 1_1:+7094317 Msa0004610:CDS
AACCACCTATGAACAAGTTT+TGG 0.306684 1_1:-7095623 None:intergenic
CTTACATCTTCAAGAATATA+TGG 0.308293 1_1:-7095863 None:intergenic
ATACTATATATAACACTATT+AGG 0.314376 1_1:-7095041 None:intergenic
AAGGGAGGGTGCGAGGTAGG+TGG 0.317009 1_1:-7092993 None:intergenic
AATTTGGCTGCATAGCTATC+AGG 0.319175 1_1:+7094539 Msa0004610:CDS
GGAGGTGGAGGAGGGAAGGG+AGG 0.326279 1_1:-7093008 None:intergenic
TACCTTAGTTCTTCTGTTCA+AGG 0.335736 1_1:+7094309 Msa0004610:CDS
TCCCTTGACTTTACAATCAA+TGG 0.337999 1_1:-7095774 None:intergenic
TCTGTTCTTTATTTAACTTC+AGG 0.342578 1_1:-7095328 None:intergenic
AGGGAAAGGGAAAGGTATTC+TGG 0.343457 1_1:+7095792 Msa0004610:CDS
CTGGCTTTGTAAGGAGTTAC+CGG 0.345149 1_1:+7093221 Msa0004610:CDS
ATATTCAGGAAATCACTTAA+AGG 0.349756 1_1:+7095190 Msa0004610:CDS
TGAGGGCCTGCGCAAGGGAG+GGG 0.351418 1_1:+7094652 Msa0004610:CDS
GGTAAGCCACAATCAATATA+TGG 0.352346 1_1:-7094290 None:intergenic
AGGAGGGAAGGGAGGGTGCG+AGG 0.357265 1_1:-7093000 None:intergenic
GGGAAGGGAGGGTGCGAGGT+AGG 0.358497 1_1:-7092996 None:intergenic
GAGGGCCTGCGCAAGGGAGG+GGG 0.359066 1_1:+7094653 Msa0004610:CDS
TTAAGTGATTTCCTGAATAT+AGG 0.360058 1_1:-7095187 None:intergenic
TGGCGGAGGTGGAGGAGGGA+AGG 0.365571 1_1:-7093012 None:intergenic
GCAATGGTGCAAAACTTATC+TGG 0.373004 1_1:-7095542 None:intergenic
CAATTCCAAAACTTGTTCAT+AGG 0.373747 1_1:+7095618 Msa0004610:CDS
TTATTTAACTTCAGGCTCAT+TGG 0.384361 1_1:-7095320 None:intergenic
GGAATTGTAGGTTGACCATT+TGG 0.387144 1_1:-7095602 None:intergenic
CAGAGTTGCCTGGCTTTGTA+AGG 0.392853 1_1:+7093212 Msa0004610:CDS
TTACATGGATACCTATATTC+AGG 0.393280 1_1:+7095176 Msa0004610:CDS
TTAGATTCTTTGGTGAAAGT+TGG 0.397946 1_1:+7095068 Msa0004610:CDS
GAAGCAATACAACTTGGTTC+TGG 0.398600 1_1:+7095828 Msa0004610:CDS
GGCGGAGGTGGAGGAGGGAA+GGG 0.399441 1_1:-7093011 None:intergenic
AATAAACATATGATGGTGTA+AGG 0.401918 1_1:-7094941 None:intergenic
AATTTCCATCAAAATTGAAA+TGG 0.402162 1_1:-7095424 None:intergenic
ATTCCACCGAATGATTCAAT+TGG 0.404834 1_1:+7094356 Msa0004610:CDS
GAACGCATTGAAGAGAGGTT+AGG 0.409774 1_1:-7092931 None:intergenic
TAAGGAGTTACCGGCGCATA+AGG 0.411126 1_1:+7093230 Msa0004610:CDS
TGAGTTTATATATCATCGTT+TGG 0.412181 1_1:+7094473 Msa0004610:CDS
TGTTGTCAGGAAGGTCTTGA+TGG 0.413959 1_1:-7093077 None:intergenic
GAACAGAGAGAAATACTGAT+TGG 0.415232 1_1:+7095344 Msa0004610:CDS
CTTGAGGGCCTGCGCAAGGG+AGG 0.416299 1_1:+7094650 Msa0004610:CDS
CAAAATGGAAGTCCACTCTA+AGG 0.416614 1_1:+7094752 Msa0004610:CDS
ATATAAACTCAGCTTGCTTA+AGG 0.416737 1_1:-7094461 None:intergenic
GAAAGTGGCGGAGGTGGAGG+AGG 0.422461 1_1:-7093017 None:intergenic
AATATCTCCAAGGACTTCAT+AGG 0.423483 1_1:-7094783 None:intergenic
AAACAAGCGGCTGCCGCGTC+CGG 0.426245 1_1:+7093140 Msa0004610:CDS
TGCGCGGAAAGTGGCGGAGG+TGG 0.428693 1_1:-7093023 None:intergenic
TAAGGGAAGTCGTGAGGGTG+TGG 0.438002 1_1:+7095721 Msa0004610:CDS
CTTACAAAGCCAGGCAACTC+TGG 0.438168 1_1:-7093211 None:intergenic
CCGTTTCGCAGGGGTGGAGG+AGG 0.438291 1_1:+7093110 Msa0004610:CDS
TTTGATGATATTATCAATCA+AGG 0.443335 1_1:+7094243 Msa0004610:CDS
TATATGGAACGTGGACTCGC+TGG 0.444107 1_1:-7094274 None:intergenic
GCGGAAAGTGGCGGAGGTGG+AGG 0.445632 1_1:-7093020 None:intergenic
TATCATCGTTTGGTTACAAA+TGG 0.445733 1_1:+7094483 Msa0004610:CDS
GTATTCTGGATTGGTATTCT+GGG 0.446524 1_1:+7095806 Msa0004610:CDS
TAAGATGATGTTACATGATC+GGG 0.446858 1_1:-7095156 None:intergenic
AACTCCTTCACCTCAACCTC+CGG 0.449790 1_1:-7093159 None:intergenic
GATGTAGCCACTCATAAAAC+TGG 0.455806 1_1:-7095484 None:intergenic
GAAACTGAAGCAGAAGCAAC+AGG 0.459992 1_1:-7092880 None:intergenic
TGGAGGAAGCAGAGAAAACT+TGG 0.461017 1_1:+7094679 Msa0004610:CDS
CACTTTCCGCGCAACTGCGT+TGG 0.461992 1_1:+7093033 Msa0004610:CDS
CCTGCTTAAAGGTATACAAA+TGG 0.463097 1_1:+7094121 Msa0004610:intron
AACGCATTGAAGAGAGGTTA+GGG 0.465533 1_1:-7092930 None:intergenic
GATGTGCATAAAGATATTTA+TGG 0.465782 1_1:+7094510 Msa0004610:CDS
TACTTGCATCACGAAACATT+TGG 0.467025 1_1:-7095121 None:intergenic
CGGAAAATATCGTTGTTGTC+AGG 0.473397 1_1:-7093090 None:intergenic
TGAGTGAGGTGCCGGAGCTA+TGG 0.474011 1_1:+7093181 Msa0004610:CDS
TTTCCGTTTCGCAGGGGTGG+AGG 0.485521 1_1:+7093107 Msa0004610:CDS
GGAGGGCATCGAAATTCATC+GGG 0.486854 1_1:+7095680 Msa0004610:CDS
TGTACACAAAAGCCTGTGAT+GGG 0.487794 1_1:-7094731 None:intergenic
AACAGAGAGAAATACTGATT+GGG 0.489307 1_1:+7095345 Msa0004610:CDS
ATCCACCCAATTGAATCATT+CGG 0.490712 1_1:-7094362 None:intergenic
GTTGGTAAAATTGACAAGGC+TGG 0.491220 1_1:+7095086 Msa0004610:CDS
CCTCCTCCACCCCTGCGAAA+CGG 0.494210 1_1:-7093110 None:intergenic
CTGATTGGGATGCTTCTAGC+TGG 0.494346 1_1:+7095359 Msa0004610:CDS
TTCCACCGAATGATTCAATT+GGG 0.494453 1_1:+7094357 Msa0004610:CDS
TGTAAAAGCATAACCTAGTC+CGG 0.496618 1_1:-7096032 None:intergenic
TACTGCTTTGAAAAGTTCCC+TGG 0.496818 1_1:-7094438 None:intergenic
TTTAGTAAATAAACATATGA+TGG 0.501648 1_1:-7094948 None:intergenic
GTCCATTGATTGTAAAGTCA+AGG 0.503337 1_1:+7095772 Msa0004610:CDS
GGCGGAGGTCCAGAGTTGCC+TGG 0.503370 1_1:+7093202 Msa0004610:CDS
GAAGGAGTTGAGTGAGGTGC+CGG 0.507984 1_1:+7093173 Msa0004610:CDS
GCTGCCGCGTCCGGAGGTTG+AGG 0.508724 1_1:+7093149 Msa0004610:CDS
GCGTCCGGAGGTTGAGGTGA+AGG 0.508842 1_1:+7093155 Msa0004610:CDS
TACTAGGCTAGCAGATTACA+TGG 0.508890 1_1:+7094185 Msa0004610:CDS
CGATCTTGAGGGCCTGCGCA+AGG 0.509240 1_1:+7094646 Msa0004610:CDS
CGGTAACTCCTTACAAAGCC+AGG 0.511509 1_1:-7093220 None:intergenic
CTTGCATACTGGTACATGTA+TGG 0.514271 1_1:+7095659 Msa0004610:CDS
CAACGCAGTTGCGCGGAAAG+TGG 0.514878 1_1:-7093032 None:intergenic
GGTGCGAGGTAGGTGGAGAG+TGG 0.515397 1_1:-7092986 None:intergenic
TGATGCAACGCAGTTGGTAT+CGG 0.517096 1_1:+7094145 Msa0004610:CDS
TTGAGGGCCTGCGCAAGGGA+GGG 0.517464 1_1:+7094651 Msa0004610:CDS
AGGTAGGTGGAGAGTGGTGA+GGG 0.518168 1_1:-7092980 None:intergenic
AACCTTGAACAGAAGAACTA+AGG 0.520036 1_1:-7094311 None:intergenic
GATTGTAAAGTCAAGGGAAA+GGG 0.520477 1_1:+7095779 Msa0004610:CDS
CACGTTCCATATATTGATTG+TGG 0.521967 1_1:+7094284 Msa0004610:CDS
TTGTACACAAAAGCCTGTGA+TGG 0.523890 1_1:-7094732 None:intergenic
AGGTGTGAATATAATGAGAC+AGG 0.525973 1_1:+7095901 Msa0004610:CDS
GATCTTGAGGGCCTGCGCAA+GGG 0.528756 1_1:+7094647 Msa0004610:CDS
GTAAGATGATGTTACATGAT+CGG 0.529110 1_1:-7095157 None:intergenic
ACTGCAATGATGATCATAGT+TGG 0.532948 1_1:+7095986 Msa0004610:three_prime_UTR
TCATGTAACATCATCTTACA+TGG 0.535360 1_1:+7095161 Msa0004610:CDS
TGGAGGGCATCGAAATTCAT+CGG 0.541168 1_1:+7095679 Msa0004610:CDS
AAATATCTTTATGCACATCA+AGG 0.541678 1_1:-7094506 None:intergenic
AAGGGAAAGGTATTCTGGAT+TGG 0.541846 1_1:+7095797 Msa0004610:CDS
GTAAGAGATTTCACTAAGGC+AGG 0.542553 1_1:+7095881 Msa0004610:CDS
TGGTATGCCTATGAAGTCCT+TGG 0.542710 1_1:+7094776 Msa0004610:CDS
CGCTTATAAGAGCTTTGAAG+AGG 0.543004 1_1:-7094413 None:intergenic
ACCATTTGGCCAAAACTGAT+CGG 0.544895 1_1:-7095588 None:intergenic
TCACCACTTGGCTTAGAAGT+AGG 0.546193 1_1:-7095506 None:intergenic
AGGTGCTAGTATCGATCTTG+AGG 0.547318 1_1:+7094634 Msa0004610:CDS
CTGGACCTCCGCCATAGCTC+CGG 0.547816 1_1:-7093192 None:intergenic
ATGTTCTTACTGTCACCACT+TGG 0.551541 1_1:-7095518 None:intergenic
GACTTTACAATCAATGGACA+TGG 0.551655 1_1:-7095768 None:intergenic
ATCACATGATAAATTGGAAG+AGG 0.554760 1_1:+7094989 Msa0004610:CDS
GGTGCTAGTATCGATCTTGA+GGG 0.554891 1_1:+7094635 Msa0004610:CDS
ATATGGAACGTGGACTCGCT+GGG 0.555396 1_1:-7094273 None:intergenic
CACCGAATGATTCAATTGGG+TGG 0.555489 1_1:+7094360 Msa0004610:CDS
TTCTGGGAAGCAATACAACT+TGG 0.555919 1_1:+7095822 Msa0004610:CDS
TTCCAAAACTTGTTCATAGG+TGG 0.558137 1_1:+7095621 Msa0004610:CDS
TTCACCTCAACCTCCGGACG+CGG 0.561786 1_1:-7093153 None:intergenic
CGCAGTTGCGCGGAAAGTGG+CGG 0.563779 1_1:-7093029 None:intergenic
TCCATTGATTGTAAAGTCAA+GGG 0.563781 1_1:+7095773 Msa0004610:CDS
TAAACATATGATGGTGTAAG+GGG 0.566401 1_1:-7094939 None:intergenic
GAGGTGGAGGAGGGAAGGGA+GGG 0.570271 1_1:-7093007 None:intergenic
GAGTGGTGAGGGTAAGATTG+CGG 0.570839 1_1:-7092969 None:intergenic
TACACAAAAGCCTGTGATGG+GGG 0.572867 1_1:-7094729 None:intergenic
TAAAGTCAAGGGAAAGGGAA+AGG 0.573314 1_1:+7095784 Msa0004610:CDS
ATGGAAGTCCACTCTAAGGT+TGG 0.573408 1_1:+7094756 Msa0004610:CDS
ACGTGGACTCGCTGGGAACA+CGG 0.577330 1_1:-7094266 None:intergenic
CAAGCGGCTGCCGCGTCCGG+AGG 0.577693 1_1:+7093143 Msa0004610:CDS
GTGAGGTGCCGGAGCTATGG+CGG 0.580371 1_1:+7093184 Msa0004610:CDS
ATAAACATATGATGGTGTAA+GGG 0.580524 1_1:-7094940 None:intergenic
AATACATCCTGAGTTTGAGA+AGG 0.581619 1_1:+7095282 Msa0004610:CDS
AAAGTCCCCGCCTTATGCGC+CGG 0.582323 1_1:-7093240 None:intergenic
AGTTGCGCGGAAAGTGGCGG+AGG 0.583379 1_1:-7093026 None:intergenic
GAAGCAACAGGAAGAAGAAG+TGG 0.583833 1_1:-7092868 None:intergenic
AAAGTGGCGGAGGTGGAGGA+GGG 0.585991 1_1:-7093016 None:intergenic
AAAGCTCTTATAAGCGAACC+AGG 0.587841 1_1:+7094420 Msa0004610:CDS
GCCAAAATGAGAGCTTGCAA+TGG 0.588265 1_1:-7095558 None:intergenic
ATGTTTCGTGATGCAAGTAT+TGG 0.589456 1_1:+7095125 Msa0004610:CDS
AATGGATGATGCAACGCAGT+TGG 0.589865 1_1:+7094139 Msa0004610:CDS
TATATATAACACTATTAGGA+TGG 0.591675 1_1:-7095037 None:intergenic
TGATTGTAAAGTCAAGGGAA+AGG 0.594051 1_1:+7095778 Msa0004610:CDS
GAGGTAGGTGGAGAGTGGTG+AGG 0.594635 1_1:-7092981 None:intergenic
AGGTGCCGGAGCTATGGCGG+AGG 0.598308 1_1:+7093187 Msa0004610:CDS
TATGCAAGCTAAGACGCGGC+TGG 0.601478 1_1:-7094386 None:intergenic
GCATACTGGTACATGTATGG+AGG 0.605806 1_1:+7095662 Msa0004610:CDS
AAGAAAGAATAGAAGCATTG+AGG 0.611980 1_1:+7094574 Msa0004610:CDS
CATTTCTCTAAATATCTCCA+AGG 0.612521 1_1:-7094793 None:intergenic
AAGATTAAGGGAAGTCGTGA+GGG 0.613821 1_1:+7095716 Msa0004610:CDS
AAATATCGTTGTTGTCAGGA+AGG 0.616522 1_1:-7093086 None:intergenic
GTACACAAAAGCCTGTGATG+GGG 0.621853 1_1:-7094730 None:intergenic
CACCCAATTGAATCATTCGG+TGG 0.622335 1_1:-7094359 None:intergenic
GAAGATTAAGGGAAGTCGTG+AGG 0.622880 1_1:+7095715 Msa0004610:CDS
TGAGGTGAAGGAGTTGAGTG+AGG 0.623246 1_1:+7093167 Msa0004610:CDS
TATTAGGATGGCATTTCTCG+AGG 0.625254 1_1:-7095025 None:intergenic
GCGTTGGCAACGTCGAACAA+TGG 0.625359 1_1:+7093049 Msa0004610:CDS
GCTTATAAGAGCTTTGAAGA+GGG 0.626136 1_1:-7094412 None:intergenic
AGGCAAGAGATGCTACGCGC+TGG 0.626231 1_1:+7094594 Msa0004610:CDS
CATACTGGTACATGTATGGA+GGG 0.627303 1_1:+7095663 Msa0004610:CDS
TAATATCATCAAATACCTCA+CGG 0.632598 1_1:-7094233 None:intergenic
ACGTTGCCAACGCAGTTGCG+CGG 0.633535 1_1:-7093039 None:intergenic
TAGGCATACCAACCTTAGAG+TGG 0.638621 1_1:-7094764 None:intergenic
AGATGTAAGAGATTTCACTA+AGG 0.650087 1_1:+7095877 Msa0004610:CDS
TACCAGTATGCAAGAACACA+AGG 0.651343 1_1:-7095650 None:intergenic
AAGATTGCGGAAAAGTGTGA+AGG 0.663910 1_1:-7092956 None:intergenic
CACAATCAATATATGGAACG+TGG 0.669238 1_1:-7094283 None:intergenic
TGGTATTGATGAAAATCAAG+AGG 0.669406 1_1:+7094614 Msa0004610:CDS
AGGTAGAACGCATTGAAGAG+AGG 0.675671 1_1:-7092936 None:intergenic
CATCCTACTTCTAAGCCAAG+TGG 0.677886 1_1:+7095503 Msa0004610:CDS
TGATGATCATAGTTGGACTG+AGG 0.691050 1_1:+7095993 Msa0004610:three_prime_UTR
AGGAGGCTGAAGAAAACAAG+CGG 0.696169 1_1:+7093127 Msa0004610:CDS
GTGCATAAAGATATTTATGG+TGG 0.703198 1_1:+7094513 Msa0004610:CDS
GAATTATGCAAGCTAAGACG+CGG 0.705558 1_1:-7094390 None:intergenic
ACTAGGCTAGCAGATTACAT+GGG 0.706145 1_1:+7094186 Msa0004610:CDS
CAAGTTTACAAAGTGCCGTG+AGG 0.713955 1_1:+7094218 Msa0004610:CDS
GAGGGCATCGAAATTCATCG+GGG 0.720882 1_1:+7095681 Msa0004610:CDS
AAGCTCTTATAAGCGAACCA+GGG 0.725063 1_1:+7094421 Msa0004610:CDS
AGGGCATCGAAATTCATCGG+GGG 0.752383 1_1:+7095682 Msa0004610:CDS
GAAAGTTGGTAAAATTGACA+AGG 0.752517 1_1:+7095082 Msa0004610:CDS
ACACAAAAGCCTGTGATGGG+GGG 0.758936 1_1:-7094728 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAGGAAAAATAATTAAATTT+GGG - chr1_1:7094105-7094124 None:intergenic 15.0%
!! TTTAGTAAATAAACATATGA+TGG - chr1_1:7094951-7094970 None:intergenic 15.0%
!! ATACTATATATAACACTATT+AGG - chr1_1:7095044-7095063 None:intergenic 15.0%
!! TAGTATATATTTAGATTCTT+TGG + chr1_1:7095058-7095077 Msa0004610:CDS 15.0%
!! AAAAAAACTAAGTCTATGTT+TGG - chr1_1:7093605-7093624 None:intergenic 20.0%
!!! TCTTCAATTCAATTTGTTTT+AGG + chr1_1:7093652-7093671 Msa0004610:intron 20.0%
!!! CTTCAATTCAATTTGTTTTA+GGG + chr1_1:7093653-7093672 Msa0004610:intron 20.0%
!! TAGATATTCAAGAAAGAAAT+TGG + chr1_1:7093695-7093714 Msa0004610:intron 20.0%
!!! AAGGTTTTAGTTACTAATAT+CGG + chr1_1:7093809-7093828 Msa0004610:intron 20.0%
!! CTGATTTCATAATAAATTCA+AGG - chr1_1:7093937-7093956 None:intergenic 20.0%
!! GCAGGAAAAATAATTAAATT+TGG - chr1_1:7094106-7094125 None:intergenic 20.0%
!!! TAATTATTTTTCCTGCTTAA+AGG + chr1_1:7094110-7094129 Msa0004610:intron 20.0%
!!! TTTGATGATATTATCAATCA+AGG + chr1_1:7094243-7094262 Msa0004610:CDS 20.0%
!! TATATATAACACTATTAGGA+TGG - chr1_1:7095040-7095059 None:intergenic 20.0%
!!! CATCAATTTCATACTTATTT+TGG - chr1_1:7095241-7095260 None:intergenic 20.0%
!!! ATTCAAGTTTTTCCATTAAT+GGG - chr1_1:7095265-7095284 None:intergenic 20.0%
!!! TATTCAAGTTTTTCCATTAA+TGG - chr1_1:7095266-7095285 None:intergenic 20.0%
!!! ATTATCCATTTCAATTTTGA+TGG + chr1_1:7095419-7095438 Msa0004610:CDS 20.0%
!! AATTTCCATCAAAATTGAAA+TGG - chr1_1:7095427-7095446 None:intergenic 20.0%
! ATATCATTATGCATTGTTTG+CGG + chr1_1:7093416-7093435 Msa0004610:intron 25.0%
! TTTAGAGAAATGAAAGTGAA+GGG - chr1_1:7093485-7093504 None:intergenic 25.0%
! ATTTAGAGAAATGAAAGTGA+AGG - chr1_1:7093486-7093505 None:intergenic 25.0%
!! TACCAATTCTGAAAAAAGAA+AGG - chr1_1:7093854-7093873 None:intergenic 25.0%
!! TACTGATTGGAATTAGTATA+TGG + chr1_1:7094007-7094026 Msa0004610:intron 25.0%
! TAATATCATCAAATACCTCA+CGG - chr1_1:7094236-7094255 None:intergenic 25.0%
! TGAGTTTATATATCATCGTT+TGG + chr1_1:7094473-7094492 Msa0004610:CDS 25.0%
! AAATATCTTTATGCACATCA+AGG - chr1_1:7094509-7094528 None:intergenic 25.0%
! GATGTGCATAAAGATATTTA+TGG + chr1_1:7094510-7094529 Msa0004610:CDS 25.0%
! TTCTATTCTTTCTTTGTCTA+TGG - chr1_1:7094568-7094587 None:intergenic 25.0%
! AGAGAAATGAAGTTGAAATT+AGG + chr1_1:7094807-7094826 Msa0004610:CDS 25.0%
!! ATAAACATATGATGGTGTAA+GGG - chr1_1:7094943-7094962 None:intergenic 25.0%
!! AATAAACATATGATGGTGTA+AGG - chr1_1:7094944-7094963 None:intergenic 25.0%
! ACTAAACATGTACTTCAATA+TGG + chr1_1:7094965-7094984 Msa0004610:CDS 25.0%
! TATGGAATCACATGATAAAT+TGG + chr1_1:7094983-7095002 Msa0004610:CDS 25.0%
! TTAAGTGATTTCCTGAATAT+AGG - chr1_1:7095190-7095209 None:intergenic 25.0%
! ATATTCAGGAAATCACTTAA+AGG + chr1_1:7095190-7095209 Msa0004610:CDS 25.0%
!!! TTCAAGTTTTTCCATTAATG+GGG - chr1_1:7095264-7095283 None:intergenic 25.0%
!! TCTGTTCTTTATTTAACTTC+AGG - chr1_1:7095331-7095350 None:intergenic 25.0%
! CTTACATCTTCAAGAATATA+TGG - chr1_1:7095866-7095885 None:intergenic 25.0%
ACTTTGATTAGGATTCTGAA+TGG + chr1_1:7093258-7093277 Msa0004610:intron 30.0%
CTTTGATTAGGATTCTGAAT+GGG + chr1_1:7093259-7093278 Msa0004610:intron 30.0%
!! CTAAAATTGAGTTGAGTTGA+AGG + chr1_1:7093540-7093559 Msa0004610:intron 30.0%
!!! AGACTTAGTTTTTTTGCTTG+TGG + chr1_1:7093610-7093629 Msa0004610:intron 30.0%
!!! GACTTAGTTTTTTTGCTTGT+GGG + chr1_1:7093611-7093630 Msa0004610:intron 30.0%
AAGAACTATAAACCAAGACT+TGG - chr1_1:7093750-7093769 None:intergenic 30.0%
TTCTTTATGCTACAAAGCTT+AGG + chr1_1:7093765-7093784 Msa0004610:intron 30.0%
TCTTTATGCTACAAAGCTTA+GGG + chr1_1:7093766-7093785 Msa0004610:intron 30.0%
!! TAGGGAGGAATTTAAGTTTT+AGG + chr1_1:7093784-7093803 Msa0004610:intron 30.0%
!! AGGGAGGAATTTAAGTTTTA+GGG + chr1_1:7093785-7093804 Msa0004610:intron 30.0%
!!! GGAATTTAAGTTTTAGGGAA+AGG + chr1_1:7093790-7093809 Msa0004610:intron 30.0%
!!! TGCCTTTCTTTTTTCAGAAT+TGG + chr1_1:7093849-7093868 Msa0004610:intron 30.0%
TACTAATTCCAATCAGTAGA+AGG - chr1_1:7094005-7094024 None:intergenic 30.0%
! TTGATTTTGCTCTTTCTACT+AGG + chr1_1:7094169-7094188 Msa0004610:CDS 30.0%
! ATATAAACTCAGCTTGCTTA+AGG - chr1_1:7094464-7094483 None:intergenic 30.0%
TATCATCGTTTGGTTACAAA+TGG + chr1_1:7094483-7094502 Msa0004610:CDS 30.0%
GTGCATAAAGATATTTATGG+TGG + chr1_1:7094513-7094532 Msa0004610:CDS 30.0%
ATATTTATGGTGGCCTAATT+TGG + chr1_1:7094523-7094542 Msa0004610:CDS 30.0%
!! AAGAAAGAATAGAAGCATTG+AGG + chr1_1:7094574-7094593 Msa0004610:CDS 30.0%
!! TGGTATTGATGAAAATCAAG+AGG + chr1_1:7094614-7094633 Msa0004610:CDS 30.0%
CATTTCTCTAAATATCTCCA+AGG - chr1_1:7094796-7094815 None:intergenic 30.0%
! CATGATTGATTCTGCAAATT+CGG - chr1_1:7094892-7094911 None:intergenic 30.0%
! TAAACATATGATGGTGTAAG+GGG - chr1_1:7094942-7094961 None:intergenic 30.0%
ATCACATGATAAATTGGAAG+AGG + chr1_1:7094989-7095008 Msa0004610:CDS 30.0%
TTAGATTCTTTGGTGAAAGT+TGG + chr1_1:7095068-7095087 Msa0004610:CDS 30.0%
!! GAAAGTTGGTAAAATTGACA+AGG + chr1_1:7095082-7095101 Msa0004610:CDS 30.0%
TAAGATGATGTTACATGATC+GGG - chr1_1:7095159-7095178 None:intergenic 30.0%
GTAAGATGATGTTACATGAT+CGG - chr1_1:7095160-7095179 None:intergenic 30.0%
TCATGTAACATCATCTTACA+TGG + chr1_1:7095161-7095180 Msa0004610:CDS 30.0%
TTACATGGATACCTATATTC+AGG + chr1_1:7095176-7095195 Msa0004610:CDS 30.0%
! TAATTTTCCTTCTCAAACTC+AGG - chr1_1:7095292-7095311 None:intergenic 30.0%
! TTATTTAACTTCAGGCTCAT+TGG - chr1_1:7095323-7095342 None:intergenic 30.0%
! AACAGAGAGAAATACTGATT+GGG + chr1_1:7095345-7095364 Msa0004610:CDS 30.0%
!!! TGAACAAGTTTTGGAATTGT+AGG - chr1_1:7095617-7095636 None:intergenic 30.0%
! CAATTCCAAAACTTGTTCAT+AGG + chr1_1:7095618-7095637 Msa0004610:CDS 30.0%
! GATGTTTTGCTGAAGATTAA+GGG + chr1_1:7095704-7095723 Msa0004610:CDS 30.0%
! TCCATTGATTGTAAAGTCAA+GGG + chr1_1:7095773-7095792 Msa0004610:CDS 30.0%
AGATGTAAGAGATTTCACTA+AGG + chr1_1:7095877-7095896 Msa0004610:CDS 30.0%
GAATCAGACGAATGAAAAAA+AGG + chr1_1:7095959-7095978 Msa0004610:exon 30.0%
! AGGAAAATTTTTGCTTATGC+CGG + chr1_1:7096013-7096032 Msa0004610:three_prime_UTR 30.0%
AAATATCGTTGTTGTCAGGA+AGG - chr1_1:7093089-7093108 None:intergenic 35.0%
! TTTTGCTTGTGGGAATTGAT+TGG + chr1_1:7093621-7093640 Msa0004610:intron 35.0%
CTGATGTAAGACTAGCAATA+AGG - chr1_1:7093885-7093904 None:intergenic 35.0%
TAATCAACTAATACCTGACC+TGG - chr1_1:7093972-7093991 None:intergenic 35.0%
ATGTGTTTCCTTCTACTGAT+TGG + chr1_1:7093994-7094013 Msa0004610:intron 35.0%
TGGGAACAAATTACAGCTTA+AGG - chr1_1:7094086-7094105 None:intergenic 35.0%
CCATTTGTATACCTTTAAGC+AGG - chr1_1:7094124-7094143 None:intergenic 35.0%
! CCTGCTTAAAGGTATACAAA+TGG + chr1_1:7094121-7094140 Msa0004610:intron 35.0%
CACAATCAATATATGGAACG+TGG - chr1_1:7094286-7094305 None:intergenic 35.0%
! CACGTTCCATATATTGATTG+TGG + chr1_1:7094284-7094303 Msa0004610:CDS 35.0%
GGTAAGCCACAATCAATATA+TGG - chr1_1:7094293-7094312 None:intergenic 35.0%
! TACCTTAGTTCTTCTGTTCA+AGG + chr1_1:7094309-7094328 Msa0004610:CDS 35.0%
AACCTTGAACAGAAGAACTA+AGG - chr1_1:7094314-7094333 None:intergenic 35.0%
TTCTTCTGTTCAAGGTTGTT+TGG + chr1_1:7094317-7094336 Msa0004610:CDS 35.0%
ATTCCACCGAATGATTCAAT+TGG + chr1_1:7094356-7094375 Msa0004610:CDS 35.0%
TTCCACCGAATGATTCAATT+GGG + chr1_1:7094357-7094376 Msa0004610:CDS 35.0%
ATCCACCCAATTGAATCATT+CGG - chr1_1:7094365-7094384 None:intergenic 35.0%
!! GCTTATAAGAGCTTTGAAGA+GGG - chr1_1:7094415-7094434 None:intergenic 35.0%
GCTTTCAAACTGCAAAAGTT+TGG - chr1_1:7094706-7094725 None:intergenic 35.0%
! ACAGGCTTTTGTGTACAAAA+TGG + chr1_1:7094737-7094756 Msa0004610:CDS 35.0%
AATATCTCCAAGGACTTCAT+AGG - chr1_1:7094786-7094805 None:intergenic 35.0%
! ATGACAGATTTTGTCAAGAG+TGG + chr1_1:7094909-7094928 Msa0004610:CDS 35.0%
TACTTGCATCACGAAACATT+TGG - chr1_1:7095124-7095143 None:intergenic 35.0%
ATGTTTCGTGATGCAAGTAT+TGG + chr1_1:7095125-7095144 Msa0004610:CDS 35.0%
TGAAATTGATGCCCCATTAA+TGG + chr1_1:7095250-7095269 Msa0004610:CDS 35.0%
AATACATCCTGAGTTTGAGA+AGG + chr1_1:7095282-7095301 Msa0004610:CDS 35.0%
GAACAGAGAGAAATACTGAT+TGG + chr1_1:7095344-7095363 Msa0004610:CDS 35.0%
! TTCCAAAACTTGTTCATAGG+TGG + chr1_1:7095621-7095640 Msa0004610:CDS 35.0%
! AACCACCTATGAACAAGTTT+TGG - chr1_1:7095626-7095645 None:intergenic 35.0%
! GGATGTTTTGCTGAAGATTA+AGG + chr1_1:7095703-7095722 Msa0004610:CDS 35.0%
GACTTTACAATCAATGGACA+TGG - chr1_1:7095771-7095790 None:intergenic 35.0%
! GTCCATTGATTGTAAAGTCA+AGG + chr1_1:7095772-7095791 Msa0004610:CDS 35.0%
TCCCTTGACTTTACAATCAA+TGG - chr1_1:7095777-7095796 None:intergenic 35.0%
TGATTGTAAAGTCAAGGGAA+AGG + chr1_1:7095778-7095797 Msa0004610:CDS 35.0%
GATTGTAAAGTCAAGGGAAA+GGG + chr1_1:7095779-7095798 Msa0004610:CDS 35.0%
!! GTATTCTGGATTGGTATTCT+GGG + chr1_1:7095806-7095825 Msa0004610:CDS 35.0%
!! TACAACTTGGTTCTGGAAAT+TGG + chr1_1:7095835-7095854 Msa0004610:CDS 35.0%
AGGTGTGAATATAATGAGAC+AGG + chr1_1:7095901-7095920 Msa0004610:CDS 35.0%
ACTGCAATGATGATCATAGT+TGG + chr1_1:7095986-7096005 Msa0004610:three_prime_UTR 35.0%
! TGTAAAAGCATAACCTAGTC+CGG - chr1_1:7096035-7096054 None:intergenic 35.0%
! ACTAGGTTATGCTTTTACAC+TGG + chr1_1:7096036-7096055 Msa0004610:three_prime_UTR 35.0%
TGAAGAGAGGTTAGGGTTTA+AGG - chr1_1:7092926-7092945 None:intergenic 40.0%
AACGCATTGAAGAGAGGTTA+GGG - chr1_1:7092933-7092952 None:intergenic 40.0%
! AAGATTGCGGAAAAGTGTGA+AGG - chr1_1:7092959-7092978 None:intergenic 40.0%
CGGAAAATATCGTTGTTGTC+AGG - chr1_1:7093093-7093112 None:intergenic 40.0%
! AACGATATTTTCCGTTTCGC+AGG + chr1_1:7093099-7093118 Msa0004610:CDS 40.0%
! ACGATATTTTCCGTTTCGCA+GGG + chr1_1:7093100-7093119 Msa0004610:CDS 40.0%
! TCTATGTTTGGTTCCACCTT+TGG - chr1_1:7093593-7093612 None:intergenic 40.0%
TTATGCTACAAAGCTTAGGG+AGG + chr1_1:7093769-7093788 Msa0004610:intron 40.0%
TACTAGGCTAGCAGATTACA+TGG + chr1_1:7094185-7094204 Msa0004610:CDS 40.0%
ACTAGGCTAGCAGATTACAT+GGG + chr1_1:7094186-7094205 Msa0004610:CDS 40.0%
GAATTATGCAAGCTAAGACG+CGG - chr1_1:7094393-7094412 None:intergenic 40.0%
!! CGCTTATAAGAGCTTTGAAG+AGG - chr1_1:7094416-7094435 None:intergenic 40.0%
AAAGCTCTTATAAGCGAACC+AGG + chr1_1:7094420-7094439 Msa0004610:CDS 40.0%
AAGCTCTTATAAGCGAACCA+GGG + chr1_1:7094421-7094440 Msa0004610:CDS 40.0%
!! TACTGCTTTGAAAAGTTCCC+TGG - chr1_1:7094441-7094460 None:intergenic 40.0%
GATAGCTATGCAGCCAAATT+AGG - chr1_1:7094539-7094558 None:intergenic 40.0%
AATTTGGCTGCATAGCTATC+AGG + chr1_1:7094539-7094558 Msa0004610:CDS 40.0%
TGTACACAAAAGCCTGTGAT+GGG - chr1_1:7094734-7094753 None:intergenic 40.0%
TTGTACACAAAAGCCTGTGA+TGG - chr1_1:7094735-7094754 None:intergenic 40.0%
CAAAATGGAAGTCCACTCTA+AGG + chr1_1:7094752-7094771 Msa0004610:CDS 40.0%
TATTAGGATGGCATTTCTCG+AGG - chr1_1:7095028-7095047 None:intergenic 40.0%
! GTTGGTAAAATTGACAAGGC+TGG + chr1_1:7095086-7095105 Msa0004610:CDS 40.0%
!! TACATCGCCAGTTTTATGAG+TGG + chr1_1:7095477-7095496 Msa0004610:CDS 40.0%
GATGTAGCCACTCATAAAAC+TGG - chr1_1:7095487-7095506 None:intergenic 40.0%
ATGTTCTTACTGTCACCACT+TGG - chr1_1:7095521-7095540 None:intergenic 40.0%
GCAATGGTGCAAAACTTATC+TGG - chr1_1:7095545-7095564 None:intergenic 40.0%
! ACCATTGCAAGCTCTCATTT+TGG + chr1_1:7095557-7095576 Msa0004610:CDS 40.0%
! GCTTTTATGCCGATCAGTTT+TGG + chr1_1:7095579-7095598 Msa0004610:CDS 40.0%
ACCATTTGGCCAAAACTGAT+CGG - chr1_1:7095591-7095610 None:intergenic 40.0%
! GGAATTGTAGGTTGACCATT+TGG - chr1_1:7095605-7095624 None:intergenic 40.0%
TACCAGTATGCAAGAACACA+AGG - chr1_1:7095653-7095672 None:intergenic 40.0%
CTTGCATACTGGTACATGTA+TGG + chr1_1:7095659-7095678 Msa0004610:CDS 40.0%
CATACTGGTACATGTATGGA+GGG + chr1_1:7095663-7095682 Msa0004610:CDS 40.0%
AAGATTAAGGGAAGTCGTGA+GGG + chr1_1:7095716-7095735 Msa0004610:CDS 40.0%
TAAAGTCAAGGGAAAGGGAA+AGG + chr1_1:7095784-7095803 Msa0004610:CDS 40.0%
!! AAGGGAAAGGTATTCTGGAT+TGG + chr1_1:7095797-7095816 Msa0004610:CDS 40.0%
!! GGTATTCTGGATTGGTATTC+TGG + chr1_1:7095805-7095824 Msa0004610:CDS 40.0%
! TTCTGGGAAGCAATACAACT+TGG + chr1_1:7095822-7095841 Msa0004610:CDS 40.0%
GAAGCAATACAACTTGGTTC+TGG + chr1_1:7095828-7095847 Msa0004610:CDS 40.0%
GTAAGAGATTTCACTAAGGC+AGG + chr1_1:7095881-7095900 Msa0004610:CDS 40.0%
TGATGATCATAGTTGGACTG+AGG + chr1_1:7095993-7096012 Msa0004610:three_prime_UTR 40.0%
! ATTTTTGCTTATGCCGGACT+AGG + chr1_1:7096019-7096038 Msa0004610:three_prime_UTR 40.0%
! AGGTTATGCTTTTACACTGG+TGG + chr1_1:7096039-7096058 Msa0004610:three_prime_UTR 40.0%
GAAGCAACAGGAAGAAGAAG+TGG - chr1_1:7092871-7092890 None:intergenic 45.0%
GAAACTGAAGCAGAAGCAAC+AGG - chr1_1:7092883-7092902 None:intergenic 45.0%
GAACGCATTGAAGAGAGGTT+AGG - chr1_1:7092934-7092953 None:intergenic 45.0%
AGGTAGAACGCATTGAAGAG+AGG - chr1_1:7092939-7092958 None:intergenic 45.0%
TGTTGTCAGGAAGGTCTTGA+TGG - chr1_1:7093080-7093099 None:intergenic 45.0%
! CGATATTTTCCGTTTCGCAG+GGG + chr1_1:7093101-7093120 Msa0004610:CDS 45.0%
AGGAGGCTGAAGAAAACAAG+CGG + chr1_1:7093127-7093146 Msa0004610:CDS 45.0%
!! CTGGCTTTGTAAGGAGTTAC+CGG + chr1_1:7093221-7093240 Msa0004610:CDS 45.0%
ATAAGGCGGGGACTTTGATT+AGG + chr1_1:7093247-7093266 Msa0004610:intron 45.0%
TTAGGATTCTGAATGGGCAG+AGG + chr1_1:7093265-7093284 Msa0004610:intron 45.0%
GAGAATACTGACCCTAAACG+CGG - chr1_1:7093458-7093477 None:intergenic 45.0%
! ATGTTTGGTTCCACCTTTGG+AGG - chr1_1:7093590-7093609 None:intergenic 45.0%
! CAAGACTTGGTTTCAACAGC+TGG - chr1_1:7093737-7093756 None:intergenic 45.0%
CAGCTGTTGAAACCAAGTCT+TGG + chr1_1:7093735-7093754 Msa0004610:intron 45.0%
! AATCAGTCTTTTGTCCCTCC+AGG + chr1_1:7093951-7093970 Msa0004610:intron 45.0%
CAACTAATACCTGACCTGGA+GGG - chr1_1:7093968-7093987 None:intergenic 45.0%
TCAACTAATACCTGACCTGG+AGG - chr1_1:7093969-7093988 None:intergenic 45.0%
AATGGATGATGCAACGCAGT+TGG + chr1_1:7094139-7094158 Msa0004610:CDS 45.0%
! TGATGCAACGCAGTTGGTAT+CGG + chr1_1:7094145-7094164 Msa0004610:CDS 45.0%
!! CAAGTTTACAAAGTGCCGTG+AGG + chr1_1:7094218-7094237 Msa0004610:CDS 45.0%
CACCCAATTGAATCATTCGG+TGG - chr1_1:7094362-7094381 None:intergenic 45.0%
CACCGAATGATTCAATTGGG+TGG + chr1_1:7094360-7094379 Msa0004610:CDS 45.0%
!! AGGTGCTAGTATCGATCTTG+AGG + chr1_1:7094634-7094653 Msa0004610:CDS 45.0%
!! GGTGCTAGTATCGATCTTGA+GGG + chr1_1:7094635-7094654 Msa0004610:CDS 45.0%
TGGAGGAAGCAGAGAAAACT+TGG + chr1_1:7094679-7094698 Msa0004610:CDS 45.0%
TACACAAAAGCCTGTGATGG+GGG - chr1_1:7094732-7094751 None:intergenic 45.0%
GTACACAAAAGCCTGTGATG+GGG - chr1_1:7094733-7094752 None:intergenic 45.0%
!! ATGGAAGTCCACTCTAAGGT+TGG + chr1_1:7094756-7094775 Msa0004610:CDS 45.0%
TAGGCATACCAACCTTAGAG+TGG - chr1_1:7094767-7094786 None:intergenic 45.0%
TGGTATGCCTATGAAGTCCT+TGG + chr1_1:7094776-7094795 Msa0004610:CDS 45.0%
CATCCTACTTCTAAGCCAAG+TGG + chr1_1:7095503-7095522 Msa0004610:CDS 45.0%
TCACCACTTGGCTTAGAAGT+AGG - chr1_1:7095509-7095528 None:intergenic 45.0%
GCCAAAATGAGAGCTTGCAA+TGG - chr1_1:7095561-7095580 None:intergenic 45.0%
CACCTTGTGTTCTTGCATAC+TGG + chr1_1:7095648-7095667 Msa0004610:CDS 45.0%
GCATACTGGTACATGTATGG+AGG + chr1_1:7095662-7095681 Msa0004610:CDS 45.0%
!! TGGAGGGCATCGAAATTCAT+CGG + chr1_1:7095679-7095698 Msa0004610:CDS 45.0%
GAAGATTAAGGGAAGTCGTG+AGG + chr1_1:7095715-7095734 Msa0004610:CDS 45.0%
!! AGGGAAAGGGAAAGGTATTC+TGG + chr1_1:7095792-7095811 Msa0004610:CDS 45.0%
GAGTGGTGAGGGTAAGATTG+CGG - chr1_1:7092972-7092991 None:intergenic 50.0%
! TATTTTCCGTTTCGCAGGGG+TGG + chr1_1:7093104-7093123 Msa0004610:CDS 50.0%
AACTCCTTCACCTCAACCTC+CGG - chr1_1:7093162-7093181 None:intergenic 50.0%
TGAGGTGAAGGAGTTGAGTG+AGG + chr1_1:7093167-7093186 Msa0004610:CDS 50.0%
CTTACAAAGCCAGGCAACTC+TGG - chr1_1:7093214-7093233 None:intergenic 50.0%
!! CAGAGTTGCCTGGCTTTGTA+AGG + chr1_1:7093212-7093231 Msa0004610:CDS 50.0%
CGGTAACTCCTTACAAAGCC+AGG - chr1_1:7093223-7093242 None:intergenic 50.0%
TAAGGAGTTACCGGCGCATA+AGG + chr1_1:7093230-7093249 Msa0004610:CDS 50.0%
TTCTGAATGGGCAGAGGAAG+TGG + chr1_1:7093271-7093290 Msa0004610:intron 50.0%
CGAGAACGAAACCGCGTTTA+GGG + chr1_1:7093444-7093463 Msa0004610:intron 50.0%
GCAAAAGCAAGTCTCACCTC+TGG + chr1_1:7093562-7093581 Msa0004610:intron 50.0%
ATATGGAACGTGGACTCGCT+GGG - chr1_1:7094276-7094295 None:intergenic 50.0%
TATATGGAACGTGGACTCGC+TGG - chr1_1:7094277-7094296 None:intergenic 50.0%
! ACACAAAAGCCTGTGATGGG+GGG - chr1_1:7094731-7094750 None:intergenic 50.0%
CTGATTGGGATGCTTCTAGC+TGG + chr1_1:7095359-7095378 Msa0004610:CDS 50.0%
!! GCCGATCAGTTTTGGCCAAA+TGG + chr1_1:7095587-7095606 Msa0004610:CDS 50.0%
!! GGAGGGCATCGAAATTCATC+GGG + chr1_1:7095680-7095699 Msa0004610:CDS 50.0%
!! GAGGGCATCGAAATTCATCG+GGG + chr1_1:7095681-7095700 Msa0004610:CDS 50.0%
!! AGGGCATCGAAATTCATCGG+GGG + chr1_1:7095682-7095701 Msa0004610:CDS 50.0%
AGGTAGGTGGAGAGTGGTGA+GGG - chr1_1:7092983-7093002 None:intergenic 55.0%
! GCGTTGGCAACGTCGAACAA+TGG + chr1_1:7093049-7093068 Msa0004610:CDS 55.0%
GAAGGAGTTGAGTGAGGTGC+CGG + chr1_1:7093173-7093192 Msa0004610:CDS 55.0%
GCGAGAACGAAACCGCGTTT+AGG + chr1_1:7093443-7093462 Msa0004610:intron 55.0%
! GTCTTTTGTCCCTCCAGGTC+AGG + chr1_1:7093956-7093975 Msa0004610:intron 55.0%
TATGCAAGCTAAGACGCGGC+TGG - chr1_1:7094389-7094408 None:intergenic 55.0%
TGAAAGCAACCCCCCATCAC+AGG + chr1_1:7094719-7094738 Msa0004610:CDS 55.0%
TAAGGGAAGTCGTGAGGGTG+TGG + chr1_1:7095721-7095740 Msa0004610:CDS 55.0%
GAGGTAGGTGGAGAGTGGTG+AGG - chr1_1:7092984-7093003 None:intergenic 60.0%
! AAAGTGGCGGAGGTGGAGGA+GGG - chr1_1:7093019-7093038 None:intergenic 60.0%
CAACGCAGTTGCGCGGAAAG+TGG - chr1_1:7093035-7093054 None:intergenic 60.0%
CACTTTCCGCGCAACTGCGT+TGG + chr1_1:7093033-7093052 Msa0004610:CDS 60.0%
ACGTTGCCAACGCAGTTGCG+CGG - chr1_1:7093042-7093061 None:intergenic 60.0%
TTTCCGTTTCGCAGGGGTGG+AGG + chr1_1:7093107-7093126 Msa0004610:CDS 60.0%
TTCACCTCAACCTCCGGACG+CGG - chr1_1:7093156-7093175 None:intergenic 60.0%
!! TGAGTGAGGTGCCGGAGCTA+TGG + chr1_1:7093181-7093200 Msa0004610:CDS 60.0%
GGAGTTACCGGCGCATAAGG+CGG + chr1_1:7093233-7093252 Msa0004610:intron 60.0%
GAGTTACCGGCGCATAAGGC+GGG + chr1_1:7093234-7093253 Msa0004610:intron 60.0%
AGTTACCGGCGCATAAGGCG+GGG + chr1_1:7093235-7093254 Msa0004610:intron 60.0%
AAAGTCCCCGCCTTATGCGC+CGG - chr1_1:7093243-7093262 None:intergenic 60.0%
! CTCACCTCTGGCTCCTCCAA+AGG + chr1_1:7093574-7093593 Msa0004610:intron 60.0%
! ACCTCTGGCTCCTCCAAAGG+TGG + chr1_1:7093577-7093596 Msa0004610:intron 60.0%
! TCCACCTTTGGAGGAGCCAG+AGG - chr1_1:7093581-7093600 None:intergenic 60.0%
ACGTGGACTCGCTGGGAACA+CGG - chr1_1:7094269-7094288 None:intergenic 60.0%
AGGCAAGAGATGCTACGCGC+TGG + chr1_1:7094594-7094613 Msa0004610:CDS 60.0%
GATCTTGAGGGCCTGCGCAA+GGG + chr1_1:7094647-7094666 Msa0004610:CDS 60.0%
GGTGCGAGGTAGGTGGAGAG+TGG - chr1_1:7092989-7093008 None:intergenic 65.0%
! AAGGGAGGGTGCGAGGTAGG+TGG - chr1_1:7092996-7093015 None:intergenic 65.0%
GAGGTGGAGGAGGGAAGGGA+GGG - chr1_1:7093010-7093029 None:intergenic 65.0%
! GAAAGTGGCGGAGGTGGAGG+AGG - chr1_1:7093020-7093039 None:intergenic 65.0%
AGTTGCGCGGAAAGTGGCGG+AGG - chr1_1:7093029-7093048 None:intergenic 65.0%
CGCAGTTGCGCGGAAAGTGG+CGG - chr1_1:7093032-7093051 None:intergenic 65.0%
CCTCCTCCACCCCTGCGAAA+CGG - chr1_1:7093113-7093132 None:intergenic 65.0%
AAACAAGCGGCTGCCGCGTC+CGG + chr1_1:7093140-7093159 Msa0004610:CDS 65.0%
GCGTCCGGAGGTTGAGGTGA+AGG + chr1_1:7093155-7093174 Msa0004610:CDS 65.0%
!! GTGAGGTGCCGGAGCTATGG+CGG + chr1_1:7093184-7093203 Msa0004610:CDS 65.0%
CTGGACCTCCGCCATAGCTC+CGG - chr1_1:7093195-7093214 None:intergenic 65.0%
CGATCTTGAGGGCCTGCGCA+AGG + chr1_1:7094646-7094665 Msa0004610:CDS 65.0%
TTGAGGGCCTGCGCAAGGGA+GGG + chr1_1:7094651-7094670 Msa0004610:CDS 65.0%
! GGGAAGGGAGGGTGCGAGGT+AGG - chr1_1:7092999-7093018 None:intergenic 70.0%
! AGGAGGGAAGGGAGGGTGCG+AGG - chr1_1:7093003-7093022 None:intergenic 70.0%
GGAGGTGGAGGAGGGAAGGG+AGG - chr1_1:7093011-7093030 None:intergenic 70.0%
GGCGGAGGTGGAGGAGGGAA+GGG - chr1_1:7093014-7093033 None:intergenic 70.0%
TGGCGGAGGTGGAGGAGGGA+AGG - chr1_1:7093015-7093034 None:intergenic 70.0%
! GCGGAAAGTGGCGGAGGTGG+AGG - chr1_1:7093023-7093042 None:intergenic 70.0%
! TGCGCGGAAAGTGGCGGAGG+TGG - chr1_1:7093026-7093045 None:intergenic 70.0%
CCGTTTCGCAGGGGTGGAGG+AGG + chr1_1:7093110-7093129 Msa0004610:CDS 70.0%
!! AGGTGCCGGAGCTATGGCGG+AGG + chr1_1:7093187-7093206 Msa0004610:CDS 70.0%
GGCGGAGGTCCAGAGTTGCC+TGG + chr1_1:7093202-7093221 Msa0004610:CDS 70.0%
CTTGAGGGCCTGCGCAAGGG+AGG + chr1_1:7094650-7094669 Msa0004610:CDS 70.0%
TGAGGGCCTGCGCAAGGGAG+GGG + chr1_1:7094652-7094671 Msa0004610:CDS 70.0%
GCTGCCGCGTCCGGAGGTTG+AGG + chr1_1:7093149-7093168 Msa0004610:CDS 75.0%
GAGGGCCTGCGCAAGGGAGG+GGG + chr1_1:7094653-7094672 Msa0004610:CDS 75.0%
CACCTCCCCCTCCCTTGCGC+AGG - chr1_1:7094661-7094680 None:intergenic 75.0%
CTGCGCAAGGGAGGGGGAGG+TGG + chr1_1:7094659-7094678 Msa0004610:CDS 75.0%
CGCAAGGGAGGGGGAGGTGG+AGG + chr1_1:7094662-7094681 Msa0004610:CDS 75.0%
! CAAGCGGCTGCCGCGTCCGG+AGG + chr1_1:7093143-7093162 Msa0004610:CDS 80.0%
! GGCCTGCGCAAGGGAGGGGG+AGG + chr1_1:7094656-7094675 Msa0004610:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 7092850 7096063 7092850 ID=Msa0004610;Name=Msa0004610
chr1_1 mRNA 7092850 7096063 7092850 ID=Msa0004610-mRNA-1;Parent=Msa0004610;Name=Msa0004610-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0.5|1|1|1|2|90|747
chr1_1 exon 7092850 7093251 7092850 ID=Msa0004610-mRNA-1:exon:2458;Parent=Msa0004610-mRNA-1
chr1_1 exon 7094132 7096063 7094132 ID=Msa0004610-mRNA-1:exon:2459;Parent=Msa0004610-mRNA-1
chr1_1 CDS 7092850 7093251 7092850 ID=Msa0004610-mRNA-1:cds;Parent=Msa0004610-mRNA-1
chr1_1 CDS 7094132 7095973 7094132 ID=Msa0004610-mRNA-1:cds;Parent=Msa0004610-mRNA-1
chr1_1 three_prime_UTR 7095974 7096063 7095974 ID=Msa0004610-mRNA-1:three_prime_utr;Parent=Msa0004610-mRNA-1
Gene Sequence

>Msa0004610

ATGTTGATGTTGAAAGCACCACTTCTTCTTCCTGTTGCTTCTGCTTCAGTTTCAACTTCAGTCATAACATTTTCCTTAAACCCTAACCTCTCTTCAATGCGTTCTACCTTCACACTTTTCCGCAATCTTACCCTCACCACTCTCCACCTACCTCGCACCCTCCCTTCCCTCCTCCACCTCCGCCACTTTCCGCGCAACTGCGTTGGCAACGTCGAACAATGGCTTCTCCATCAAGACCTTCCTGACAACAACGATATTTTCCGTTTCGCAGGGGTGGAGGAGGCTGAAGAAAACAAGCGGCTGCCGCGTCCGGAGGTTGAGGTGAAGGAGTTGAGTGAGGTGCCGGAGCTATGGCGGAGGTCCAGAGTTGCCTGGCTTTGTAAGGAGTTACCGGCGCATAAGGTATACAAATGGATGATGCAACGCAGTTGGTATCGGTTTGATTTTGCTCTTTCTACTAGGCTAGCAGATTACATGGGTAAAGAGCGCAAGTTTACAAAGTGCCGTGAGGTATTTGATGATATTATCAATCAAGGCCGTGTTCCCAGCGAGTCCACGTTCCATATATTGATTGTGGCTTACCTTAGTTCTTCTGTTCAAGGTTGTTTGGATGATGCATTTGACATATTCCACCGAATGATTCAATTGGGTGGATACCAGCCGCGTCTTAGCTTGCATAATTCCCTCTTCAAAGCTCTTATAAGCGAACCAGGGAACTTTTCAAAGCAGTACCTTAAGCAAGCTGAGTTTATATATCATCGTTTGGTTACAAATGGCCTTGATGTGCATAAAGATATTTATGGTGGCCTAATTTGGCTGCATAGCTATCAGGATTCCATAGACAAAGAAAGAATAGAAGCATTGAGGCAAGAGATGCTACGCGCTGGTATTGATGAAAATCAAGAGGTGCTAGTATCGATCTTGAGGGCCTGCGCAAGGGAGGGGGAGGTGGAGGAAGCAGAGAAAACTTGGTCCAAACTTTTGCAGTTTGAAAGCAACCCCCCATCACAGGCTTTTGTGTACAAAATGGAAGTCCACTCTAAGGTTGGTATGCCTATGAAGTCCTTGGAGATATTTAGAGAAATGAAGTTGAAATTAGGTAAGACAAGTGTTGCAGCATATAATAAAATAATTGAGATTCTATGCAAAGCACAAGAATCCGAATTTGCAGAATCAATCATGACAGATTTTGTCAAGAGTGGTCTGAAGCCCCTTACACCATCATATGTTTATTTACTAAACATGTACTTCAATATGGAATCACATGATAAATTGGAAGAGGCGTTCTCTCAATGCCTCGAGAAATGCCATCCTAATAGTGTTATATATAGTATATATTTAGATTCTTTGGTGAAAGTTGGTAAAATTGACAAGGCTGGAGATATCTTTAGCCAAATGTTTCGTGATGCAAGTATTGGTGTTAATGCCCGATCATGTAACATCATCTTACATGGATACCTATATTCAGGAAATCACTTAAAGGCAGAGAAGATCTATGACTTAATGTGCCAAAATAAGTATGAAATTGATGCCCCATTAATGGAAAAACTTGAATACATCCTGAGTTTGAGAAGGAAAATTATTAAAAAGCCAATGAGCCTGAAGTTAAATAAAGAACAGAGAGAAATACTGATTGGGATGCTTCTAGCTGGTTTGCAAATTGATTCTGATGACAAAAATAAGAACTATATTATCCATTTCAATTTTGATGGAAATTCTGTGAGTCATTACGTCTTGAAGAGTCATATACATCGCCAGTTTTATGAGTGGCTACATCCTACTTCTAAGCCAAGTGGTGACAGTAAGAACATACCAGATAAGTTTTGCACCATTGCAAGCTCTCATTTTGGCTTTTATGCCGATCAGTTTTGGCCAAATGGTCAACCTACAATTCCAAAACTTGTTCATAGGTGGTTGTCACCTTGTGTTCTTGCATACTGGTACATGTATGGAGGGCATCGAAATTCATCGGGGGATGTTTTGCTGAAGATTAAGGGAAGTCGTGAGGGTGTGGAGAACATTGTCAAAAAGTTCAAAGCCATGTCCATTGATTGTAAAGTCAAGGGAAAGGGAAAGGTATTCTGGATTGGTATTCTGGGAAGCAATACAACTTGGTTCTGGAAATTGGTTGAGCCATATATTCTTGAAGATGTAAGAGATTTCACTAAGGCAGGTGTGAATATAATGAGACAGGATTTAACAGAAACTCAAGATATTAACTTCTGTAGTGAATCAGACGAATGA
Protein sequence

>Msa0004610

MLMLKAPLLLPVASASVSTSVITFSLNPNLSSMRSTFTLFRNLTLTTLHLPRTLPSLLHLRHFPRNCVGNVEQWLLHQDLPDNNDIFRFAGVEEAEENKRLPRPEVEVKELSEVPELWRRSRVAWLCKELPAHKVYKWMMQRSWYRFDFALSTRLADYMGKERKFTKCREVFDDIINQGRVPSESTFHILIVAYLSSSVQGCLDDAFDIFHRMIQLGGYQPRLSLHNSLFKALISEPGNFSKQYLKQAEFIYHRLVTNGLDVHKDIYGGLIWLHSYQDSIDKERIEALRQEMLRAGIDENQEVLVSILRACAREGEVEEAEKTWSKLLQFESNPPSQAFVYKMEVHSKVGMPMKSLEIFREMKLKLGKTSVAAYNKIIEILCKAQESEFAESIMTDFVKSGLKPLTPSYVYLLNMYFNMESHDKLEEAFSQCLEKCHPNSVIYSIYLDSLVKVGKIDKAGDIFSQMFRDASIGVNARSCNIILHGYLYSGNHLKAEKIYDLMCQNKYEIDAPLMEKLEYILSLRRKIIKKPMSLKLNKEQREILIGMLLAGLQIDSDDKNKNYIIHFNFDGNSVSHYVLKSHIHRQFYEWLHPTSKPSGDSKNIPDKFCTIASSHFGFYADQFWPNGQPTIPKLVHRWLSPCVLAYWYMYGGHRNSSGDVLLKIKGSREGVENIVKKFKAMSIDCKVKGKGKVFWIGILGSNTTWFWKLVEPYILEDVRDFTKAGVNIMRQDLTETQDINFCSESDE*