Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035970 | XP_024625946.1 | 98.025 | 405 | 8 | 0 | 1 | 405 | 1 | 405 | 0.0 | 829 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035970 | sp|Q94K49|ALP1_ARATH | 70.492 | 366 | 104 | 2 | 22 | 386 | 32 | 394 | 0.0 | 550 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035970 | A0A396HAZ6 | 98.025 | 405 | 8 | 0 | 1 | 405 | 1 | 405 | 0.0 | 829 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa1035970 | 0.823013 | 1.740827e-53 | -8.615850e-47 |
| Msa0047030 | Msa1035970 | 0.824594 | 7.417681e-54 | -8.615850e-47 |
| Msa0047070 | Msa1035970 | 0.814318 | 1.638069e-51 | -8.615850e-47 |
| Msa0075220 | Msa1035970 | 0.802475 | 5.512773e-49 | -8.615850e-47 |
| Msa0110970 | Msa1035970 | 0.829382 | 5.311763e-55 | -8.615850e-47 |
| Msa0658240 | Msa1035970 | 0.803593 | 3.237160e-49 | -8.615850e-47 |
| Msa0662330 | Msa1035970 | 0.927854 | 6.573995e-92 | -8.615850e-47 |
| Msa0664060 | Msa1035970 | 0.800179 | 1.627507e-48 | -8.615850e-47 |
| Msa0683570 | Msa1035970 | 0.807857 | 4.118886e-50 | -8.615850e-47 |
| Msa0730430 | Msa1035970 | 0.810211 | 1.290243e-50 | -8.615850e-47 |
| Msa0738040 | Msa1035970 | 0.806869 | 6.670195e-50 | -8.615850e-47 |
| Msa0751570 | Msa1035970 | 0.824511 | 7.758853e-54 | -8.615850e-47 |
| Msa0134610 | Msa1035970 | 0.809345 | 1.980914e-50 | -8.615850e-47 |
| Msa0146260 | Msa1035970 | 0.820334 | 7.246653e-53 | -8.615850e-47 |
| Msa0422850 | Msa1035970 | 0.817507 | 3.181009e-52 | -8.615850e-47 |
| Msa0422930 | Msa1035970 | 0.816191 | 6.279220e-52 | -8.615850e-47 |
| Msa0428150 | Msa1035970 | 0.833080 | 6.549786e-56 | -8.615850e-47 |
| Msa0461720 | Msa1035970 | 0.808012 | 3.817266e-50 | -8.615850e-47 |
| Msa0462500 | Msa1035970 | 0.839287 | 1.734527e-57 | -8.615850e-47 |
| Msa0475790 | Msa1035970 | 0.826768 | 2.263319e-54 | -8.615850e-47 |
| Msa1020670 | Msa1035970 | 0.802380 | 5.767582e-49 | -8.615850e-47 |
| Msa1029250 | Msa1035970 | 0.819387 | 1.192836e-52 | -8.615850e-47 |
| Msa1035970 | Msa1045140 | 0.805971 | 1.031751e-49 | -8.615850e-47 |
| Msa1035970 | Msa1065390 | 0.807183 | 5.724350e-50 | -8.615850e-47 |
| Msa1035970 | Msa1084960 | 0.822912 | 1.837743e-53 | -8.615850e-47 |
| Msa1035970 | Msa1097980 | 0.804279 | 2.331429e-49 | -8.615850e-47 |
| Msa1035970 | Msa1111090 | 0.820906 | 5.356049e-53 | -8.615850e-47 |
| Msa1035970 | Msa1111130 | 0.811901 | 5.550867e-51 | -8.615850e-47 |
| Msa1035970 | Msa1157870 | 0.804732 | 1.875800e-49 | -8.615850e-47 |
| Msa1035970 | Msa1165020 | 0.804794 | 1.820898e-49 | -8.615850e-47 |
| Msa1035970 | Msa1183120 | 0.818391 | 2.008930e-52 | -8.615850e-47 |
| Msa1035970 | Msa1200020 | 0.819200 | 1.315726e-52 | -8.615850e-47 |
| Msa1035970 | Msa1209460 | 0.808344 | 3.243546e-50 | -8.615850e-47 |
| Msa1035970 | Msa1225700 | 0.818784 | 1.635738e-52 | -8.615850e-47 |
| Msa1035970 | Msa1229500 | 0.808134 | 3.595305e-50 | -8.615850e-47 |
| Msa1035970 | Msa1236100 | 0.805384 | 1.370351e-49 | -8.615850e-47 |
| Msa1035970 | Msa1252190 | 0.800047 | 1.730843e-48 | -8.615850e-47 |
| Msa1035970 | Msa1271990 | 0.817123 | 3.882757e-52 | -8.615850e-47 |
| Msa1035970 | Msa1279380 | 0.801845 | 7.427695e-49 | -8.615850e-47 |
| Msa1035970 | Msa1309790 | 0.806500 | 7.981013e-50 | -8.615850e-47 |
| Msa1035970 | Msa1374040 | 0.825404 | 4.775264e-54 | -8.615850e-47 |
| Msa1035970 | Msa1374550 | 0.817290 | 3.560222e-52 | -8.615850e-47 |
| Msa1035970 | Msa1387870 | 0.801125 | 1.043540e-48 | -8.615850e-47 |
| Msa1035970 | Msa1393940 | 0.804628 | 1.972214e-49 | -8.615850e-47 |
| Msa1035970 | Msa1418090 | 0.802118 | 6.530391e-49 | -8.615850e-47 |
| Msa1035970 | Msa1419370 | 0.800629 | 1.317599e-48 | -8.615850e-47 |
| Msa1035970 | Msa1459380 | 0.805128 | 1.550036e-49 | -8.615850e-47 |
| Msa0255090 | Msa1035970 | 0.847788 | 9.263803e-60 | -8.615850e-47 |
| Msa0259380 | Msa1035970 | 0.842560 | 2.399987e-58 | -8.615850e-47 |
| Msa0292400 | Msa1035970 | 0.822869 | 1.880761e-53 | -8.615850e-47 |
| Msa0294160 | Msa1035970 | 0.819109 | 1.380402e-52 | -8.615850e-47 |
| Msa0316810 | Msa1035970 | 0.801867 | 7.350832e-49 | -8.615850e-47 |
| Msa0318700 | Msa1035970 | 0.802354 | 5.838152e-49 | -8.615850e-47 |
| Msa0582450 | Msa1035970 | 0.802065 | 6.694094e-49 | -8.615850e-47 |
| Msa0586190 | Msa1035970 | 0.802383 | 5.757542e-49 | -8.615850e-47 |
| Msa0869780 | Msa1035970 | 0.815147 | 1.072746e-51 | -8.615850e-47 |
| Msa0896970 | Msa1035970 | 0.809964 | 1.458453e-50 | -8.615850e-47 |
| Msa0919770 | Msa1035970 | 0.818392 | 2.008054e-52 | -8.615850e-47 |
| Msa0945110 | Msa1035970 | 0.840903 | 6.568252e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035970 | MtrunA17_Chr7g0260171 | 98.025 | 405 | 8 | 0 | 1 | 405 | 1 | 405 | 0.0 | 829 |
| Msa1035970 | MtrunA17_Chr2g0327831 | 45.707 | 396 | 193 | 9 | 1 | 387 | 1 | 383 | 3.05e-110 | 328 |
| Msa1035970 | MtrunA17_Chr1g0212591 | 44.330 | 388 | 204 | 7 | 7 | 386 | 8 | 391 | 2.24e-109 | 327 |
| Msa1035970 | MtrunA17_Chr2g0327851 | 50.000 | 330 | 157 | 6 | 64 | 386 | 2 | 330 | 5.80e-108 | 321 |
| Msa1035970 | MtrunA17_Chr1g0150771 | 29.041 | 365 | 210 | 10 | 51 | 401 | 204 | 533 | 2.33e-40 | 150 |
| Msa1035970 | MtrunA17_Chr4g0070891 | 27.473 | 364 | 225 | 9 | 33 | 388 | 144 | 476 | 4.21e-38 | 143 |
| Msa1035970 | MtrunA17_Chr4g0045251 | 31.599 | 269 | 176 | 5 | 89 | 354 | 136 | 399 | 2.11e-31 | 124 |
| Msa1035970 | MtrunA17_Chr4g0064951 | 30.060 | 336 | 204 | 11 | 62 | 388 | 103 | 416 | 7.25e-30 | 119 |
| Msa1035970 | MtrunA17_Chr4g0044711 | 28.041 | 296 | 192 | 8 | 50 | 343 | 74 | 350 | 1.63e-25 | 107 |
| Msa1035970 | MtrunA17_Chr2g0299751 | 31.210 | 157 | 92 | 5 | 33 | 188 | 171 | 312 | 2.45e-16 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035970 | AT3G63270.1 | 70.492 | 366 | 104 | 2 | 22 | 386 | 32 | 394 | 0.0 | 550 |
| Msa1035970 | AT3G55350.1 | 47.222 | 360 | 173 | 6 | 32 | 386 | 52 | 399 | 3.65e-114 | 340 |
| Msa1035970 | AT5G12010.1 | 27.887 | 355 | 220 | 9 | 56 | 401 | 173 | 500 | 4.91e-40 | 149 |
| Msa1035970 | AT4G29780.1 | 25.946 | 370 | 234 | 13 | 28 | 388 | 193 | 531 | 4.10e-30 | 122 |
| Msa1035970 | AT3G19120.1 | 29.043 | 303 | 202 | 8 | 96 | 390 | 146 | 443 | 2.25e-27 | 113 |
| Msa1035970 | AT1G72275.1 | 26.804 | 291 | 170 | 10 | 61 | 347 | 100 | 351 | 3.32e-20 | 92.4 |
| Msa1035970 | AT1G72275.2 | 26.804 | 291 | 170 | 10 | 61 | 347 | 100 | 351 | 3.65e-20 | 92.0 |
Find 103 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTGGTGGGAATCTTTC+TGG | 0.139911 | 7_1:-72083879 | Msa1035970:CDS |
| AATGGAAATGTTAGAAATTT+AGG | 0.151189 | 7_1:-72082786 | Msa1035970:CDS |
| CCAATCAACTTCATTGGTTT+TGG | 0.153961 | 7_1:+72083894 | None:intergenic |
| CAATGCAACCTCTGGATTTA+AGG | 0.161356 | 7_1:+72082485 | None:intergenic |
| TCTTCTTCTTTGGTTTCTTC+TGG | 0.190103 | 7_1:+72083962 | None:intergenic |
| CGTCTCAGCTGAAGCTGGTC+TGG | 0.256990 | 7_1:-72084014 | Msa1035970:five_prime_UTR |
| AAGGGTTTAAGTACTTCTTT+AGG | 0.258988 | 7_1:-72083361 | Msa1035970:CDS |
| AAGGACCGTGCGAGAAAATT+TGG | 0.269963 | 7_1:-72082403 | Msa1035970:CDS |
| GTCTCGGTTGGAGCTTCTTT+TGG | 0.280937 | 7_1:-72083182 | Msa1035970:CDS |
| CTTATTTAGAATTTGACTTT+TGG | 0.318338 | 7_1:-72082318 | Msa1035970:exon |
| CTTCTTTGGTTTCTTCTGGA+TGG | 0.323168 | 7_1:+72083966 | None:intergenic |
| TTGTCTGATCATCATGATTC+AGG | 0.330253 | 7_1:-72082465 | Msa1035970:CDS |
| TTCTTTGGTTTCTTCTGGAT+GGG | 0.350645 | 7_1:+72083967 | None:intergenic |
| CGGCATTCTATTGTTCAACT+TGG | 0.364932 | 7_1:-72082038 | Msa1035970:three_prime_UTR |
| AAGTTGCTATTGCTCTTAGA+AGG | 0.366769 | 7_1:-72083226 | Msa1035970:CDS |
| TCCTGCATTCTATCGGAATC+AGG | 0.375908 | 7_1:+72083077 | None:intergenic |
| CTTGCTTGCAATACTGTTCT+CGG | 0.380182 | 7_1:+72082439 | None:intergenic |
| TGCAAGCAAGTTGATCCTTC+AGG | 0.383951 | 7_1:-72082426 | Msa1035970:CDS |
| GATATTGTGACAGGTTTGCC+TGG | 0.385360 | 7_1:-72082879 | Msa1035970:CDS |
| TTCCCACCAATCAACTTCAT+TGG | 0.388446 | 7_1:+72083888 | None:intergenic |
| GCAATAATAATGAAGACATT+AGG | 0.401588 | 7_1:+72082125 | None:intergenic |
| AACCCTTGTGACTCATCATT+AGG | 0.406907 | 7_1:+72083377 | None:intergenic |
| GCGCTAAACGTCATCTGAAT+TGG | 0.409730 | 7_1:-72083100 | Msa1035970:CDS |
| AGGGTTTAAGTACTTCTTTA+GGG | 0.410115 | 7_1:-72083360 | Msa1035970:CDS |
| GTCTCAGCTGAAGCTGGTCT+GGG | 0.422629 | 7_1:-72084013 | Msa1035970:five_prime_UTR |
| GAGGGCACTTTCACTGTTGA+AGG | 0.440423 | 7_1:-72082619 | Msa1035970:CDS |
| TCAATAGCTCCACAGCAATT+AGG | 0.444465 | 7_1:+72083020 | None:intergenic |
| CAAAACGGGGAGCGTTTGAA+TGG | 0.450386 | 7_1:-72082804 | Msa1035970:CDS |
| GCTCTTAGAAGGTTGGCATC+TGG | 0.451342 | 7_1:-72083215 | Msa1035970:CDS |
| GACATTAGGATTCATTGAGC+TGG | 0.455254 | 7_1:+72082139 | None:intergenic |
| ACAGTTATCCTCTTCTTCCA+TGG | 0.457258 | 7_1:-72082728 | Msa1035970:CDS |
| TTTCACTGTTGAAGGGGAGT+TGG | 0.458436 | 7_1:-72082611 | Msa1035970:CDS |
| CGACGGTTTCACAGGTGACT+TGG | 0.459760 | 7_1:-72083148 | Msa1035970:CDS |
| CTTAATTTCCTGCATTCTAT+CGG | 0.462253 | 7_1:+72083070 | None:intergenic |
| TGCTATTGCTCTTAGAAGGT+TGG | 0.463845 | 7_1:-72083222 | Msa1035970:CDS |
| CATTCCATGTTGTATATGCT+TGG | 0.469743 | 7_1:+72082380 | None:intergenic |
| AGCTTGACTTCACTGTTCAC+TGG | 0.470417 | 7_1:-72084040 | Msa1035970:five_prime_UTR |
| AGATTCATTGATATTGTGAC+AGG | 0.471542 | 7_1:-72082888 | Msa1035970:CDS |
| TGATCAGACAATGCAACCTC+TGG | 0.476463 | 7_1:+72082477 | None:intergenic |
| AGAATGCAGGAAATTAAGTC+TGG | 0.479770 | 7_1:-72083065 | Msa1035970:CDS |
| TTCGTGTTTGTGATTAAAAG+TGG | 0.489358 | 7_1:+72082662 | None:intergenic |
| CCAAAACCAATGAAGTTGAT+TGG | 0.489737 | 7_1:-72083894 | Msa1035970:CDS |
| AATACATATGTTCTCTTGTG+AGG | 0.490441 | 7_1:-72083319 | Msa1035970:CDS |
| TCATCTGAGGTTTGAACAGC+CGG | 0.490914 | 7_1:+72082972 | None:intergenic |
| AAGTCAAATTCTAAATAAGA+TGG | 0.492131 | 7_1:+72082322 | None:intergenic |
| GAGTTGGAAAATCCTTAGTA+AGG | 0.496899 | 7_1:-72082595 | Msa1035970:CDS |
| AATTACAGCATGTTGTTACA+AGG | 0.500789 | 7_1:-72082930 | Msa1035970:CDS |
| GATCCAACACTAGTTTCATA+AGG | 0.505076 | 7_1:+72082696 | None:intergenic |
| ATCTGGCGAATCTCAAGTCT+CGG | 0.506199 | 7_1:-72083198 | Msa1035970:CDS |
| CAACATGTCAAGATAATGCT+TGG | 0.509028 | 7_1:+72082543 | None:intergenic |
| GGCGAATCTCAAGTCTCGGT+TGG | 0.515282 | 7_1:-72083194 | Msa1035970:CDS |
| CATAATATAATTATTGATTG+TGG | 0.515654 | 7_1:-72082513 | Msa1035970:CDS |
| TCTCGCACGGTCCTTCCTGA+AGG | 0.518419 | 7_1:+72082411 | None:intergenic |
| TGGCCAGTCGACGGTTTCAC+AGG | 0.522158 | 7_1:-72083156 | Msa1035970:CDS |
| CGGTTTCACAGGTGACTTGG+AGG | 0.522564 | 7_1:-72083145 | Msa1035970:CDS |
| CTGTTCAAACCTCAGATGAT+TGG | 0.525541 | 7_1:-72082968 | Msa1035970:CDS |
| CTCATATCAAGACCTCCATC+AGG | 0.527080 | 7_1:-72083290 | Msa1035970:CDS |
| GGCATTCTATTGTTCAACTT+GGG | 0.527630 | 7_1:-72082037 | Msa1035970:three_prime_UTR |
| GGTCTCGTCTCAGCTGAAGC+TGG | 0.529882 | 7_1:-72084019 | Msa1035970:five_prime_UTR |
| TGCAAGACTACTTGCAGTGA+GGG | 0.530387 | 7_1:-72082637 | Msa1035970:CDS |
| TCAGGACTTATCAACATTGA+AGG | 0.531009 | 7_1:-72083272 | Msa1035970:CDS |
| GTGATAAGAGAATATGTAGT+TGG | 0.536303 | 7_1:-72082756 | Msa1035970:CDS |
| GTCTCCACATAACCTTACTA+AGG | 0.538553 | 7_1:+72082583 | None:intergenic |
| TCACCTGTGAAACCGTCGAC+TGG | 0.539753 | 7_1:+72083153 | None:intergenic |
| ACATGTCGTGATGACACTTC+CGG | 0.548584 | 7_1:-72082991 | Msa1035970:CDS |
| TATGGTTTGCCTAATTGCTG+TGG | 0.550020 | 7_1:-72083029 | Msa1035970:CDS |
| AACCAATGAAGTTGATTGGT+GGG | 0.551092 | 7_1:-72083890 | Msa1035970:CDS |
| AAATCCTTAGTAAGGTTATG+TGG | 0.551795 | 7_1:-72082587 | Msa1035970:CDS |
| GCCTGATTCCGATAGAATGC+AGG | 0.554122 | 7_1:-72083078 | Msa1035970:CDS |
| GGAACAACCGAGTCAATCAA+TGG | 0.556579 | 7_1:-72083992 | Msa1035970:exon |
| ACGCCTTATGAAACTAGTGT+TGG | 0.566953 | 7_1:-72082699 | Msa1035970:CDS |
| ATACATATGTTCTCTTGTGA+GGG | 0.574807 | 7_1:-72083318 | Msa1035970:CDS |
| AGGGCACTTTCACTGTTGAA+GGG | 0.575665 | 7_1:-72082618 | Msa1035970:CDS |
| GAGGTTTGTTGAGGCGCTTG+AGG | 0.580047 | 7_1:-72083126 | Msa1035970:CDS |
| GGTGACTTGGAGGTTTGTTG+AGG | 0.580262 | 7_1:-72083135 | Msa1035970:CDS |
| CATATGTTCTCTTGTGAGGG+AGG | 0.581427 | 7_1:-72083315 | Msa1035970:CDS |
| AAACCAATGAAGTTGATTGG+TGG | 0.581459 | 7_1:-72083891 | Msa1035970:CDS |
| GACTTATCAACATTGAAGGA+AGG | 0.586003 | 7_1:-72083268 | Msa1035970:CDS |
| GGAAATGTTAGAAATTTAGG+TGG | 0.586192 | 7_1:-72082783 | Msa1035970:CDS |
| ATATTGTGACAGGTTTGCCT+GGG | 0.589924 | 7_1:-72082878 | Msa1035970:CDS |
| TCAATGTTGATAAGTCCTGA+TGG | 0.594934 | 7_1:+72083275 | None:intergenic |
| GTCATAAGCCATGGAAGAAG+AGG | 0.595419 | 7_1:+72082720 | None:intergenic |
| TTGATCACACCAATCATCTG+AGG | 0.598185 | 7_1:+72082959 | None:intergenic |
| GGGCACTTTCACTGTTGAAG+GGG | 0.601744 | 7_1:-72082617 | Msa1035970:CDS |
| ATGGGTGCCATTGATTGACT+CGG | 0.605252 | 7_1:+72083985 | None:intergenic |
| TAAGAGAATATGTAGTTGGT+GGG | 0.609887 | 7_1:-72082752 | Msa1035970:CDS |
| TCATAAGGCGTCATAAGCCA+TGG | 0.610829 | 7_1:+72082711 | None:intergenic |
| GTACCTAATGATGAGTCACA+AGG | 0.636305 | 7_1:-72083380 | Msa1035970:CDS |
| TTTCAAGCTCTCACAAAACG+GGG | 0.644673 | 7_1:-72082817 | Msa1035970:CDS |
| TGGGTTCAACAGGAACAACA+AGG | 0.649619 | 7_1:+72083914 | None:intergenic |
| ATAAGAGAATATGTAGTTGG+TGG | 0.654010 | 7_1:-72082753 | Msa1035970:CDS |
| TTGGCCAAGCATATACAACA+TGG | 0.657249 | 7_1:-72082384 | Msa1035970:CDS |
| GGAATGCAATTAGATGCTCA+TGG | 0.658512 | 7_1:-72082363 | Msa1035970:CDS |
| ATTCTAAATAAGATGGACAG+AGG | 0.659752 | 7_1:+72082329 | None:intergenic |
| TGGAGACACCTTAAATCCAG+AGG | 0.660988 | 7_1:-72082493 | Msa1035970:CDS |
| AGCAAGTTGATCCTTCAGGA+AGG | 0.663505 | 7_1:-72082422 | Msa1035970:CDS |
| TACCTAATGATGAGTCACAA+GGG | 0.675869 | 7_1:-72083379 | Msa1035970:CDS |
| CTGCAAGACTACTTGCAGTG+AGG | 0.676253 | 7_1:-72082638 | Msa1035970:CDS |
| AGTTGAACAATAGAATGCCG+AGG | 0.689789 | 7_1:+72082041 | None:intergenic |
| TATTGTGACAGGTTTGCCTG+GGG | 0.690512 | 7_1:-72082877 | Msa1035970:CDS |
| ATGTTGATAAGTCCTGATGG+AGG | 0.717185 | 7_1:+72083278 | None:intergenic |
| ATTGTGACAGGTTTGCCTGG+GGG | 0.725993 | 7_1:-72082876 | Msa1035970:CDS |
| AGTTGAACAACAAAATCCTG+AGG | 0.726146 | 7_1:+72082295 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACTCATTAATTAATTTT+TGG | - | chr7_1:72082630-72082649 | Msa1035970:CDS | 10.0% |
| !! | AGATGATAATATAATACAAA+GGG | + | chr7_1:72082347-72082366 | None:intergenic | 15.0% |
| !!! | CATAATATAATTATTGATTG+TGG | - | chr7_1:72083575-72083594 | Msa1035970:intron | 15.0% |
| !! | ACAAAGATTGAAAATTTGAA+GGG | + | chr7_1:72082294-72082313 | None:intergenic | 20.0% |
| !! | AACAAAGATTGAAAATTTGA+AGG | + | chr7_1:72082295-72082314 | None:intergenic | 20.0% |
| !! | GAGATGATAATATAATACAA+AGG | + | chr7_1:72082348-72082367 | None:intergenic | 20.0% |
| !! | ATGTCATTCAATTCAATATA+TGG | - | chr7_1:72082376-72082395 | Msa1035970:CDS | 20.0% |
| !!! | CATTAATTAATTTTTGGAGA+CGG | - | chr7_1:72082636-72082655 | Msa1035970:CDS | 20.0% |
| !! | AATGGAAATGTTAGAAATTT+AGG | - | chr7_1:72083302-72083321 | Msa1035970:CDS | 20.0% |
| !! | AAGTCAAATTCTAAATAAGA+TGG | + | chr7_1:72083769-72083788 | None:intergenic | 20.0% |
| !!! | CTTATTTAGAATTTGACTTT+TGG | - | chr7_1:72083770-72083789 | Msa1035970:intron | 20.0% |
| ! | ATTGAAAATTTGAAGGGAAA+TGG | + | chr7_1:72082288-72082307 | None:intergenic | 25.0% |
| !! | TTTTTGTCGAAGTCTAAATT+GGG | + | chr7_1:72082490-72082509 | None:intergenic | 25.0% |
| !!! | TTTTTTGTCGAAGTCTAAAT+TGG | + | chr7_1:72082491-72082510 | None:intergenic | 25.0% |
| !!! | TTGTTTCTGACATTTTCATT+AGG | - | chr7_1:72082523-72082542 | Msa1035970:CDS | 25.0% |
| ! | TAATCTCTGGCATTTATATA+TGG | + | chr7_1:72082570-72082589 | None:intergenic | 25.0% |
| ! | ATAAATGCCAGAGATTAAAT+TGG | - | chr7_1:72082573-72082592 | Msa1035970:CDS | 25.0% |
| ! | TAACATTCACCAAAAACAAT+GGG | + | chr7_1:72083868-72083887 | None:intergenic | 25.0% |
| ! | TTAACATTCACCAAAAACAA+TGG | + | chr7_1:72083869-72083888 | None:intergenic | 25.0% |
| ! | GCAATAATAATGAAGACATT+AGG | + | chr7_1:72083966-72083985 | None:intergenic | 25.0% |
| !! | TTCTTTTTGGTCTTCTTCTT+TGG | + | chr7_1:72082139-72082158 | None:intergenic | 30.0% |
| ! | CACTTGTTTGTGTTTCTTTT+TGG | + | chr7_1:72082152-72082171 | None:intergenic | 30.0% |
| !!! | CAATCAACTTCATTGGTTTT+GGG | + | chr7_1:72082196-72082215 | None:intergenic | 30.0% |
| !! | TTCATTCTAGAACAACAACA+TGG | + | chr7_1:72082323-72082342 | None:intergenic | 30.0% |
| TTACCACACCTCATTATTAA+AGG | - | chr7_1:72082405-72082424 | Msa1035970:CDS | 30.0% | |
| TACCACACCTCATTATTAAA+GGG | - | chr7_1:72082406-72082425 | Msa1035970:CDS | 30.0% | |
| ATCAATGCCCTTTAATAATG+AGG | + | chr7_1:72082416-72082435 | None:intergenic | 30.0% | |
| ATTGTTGCAAAAATGTACAC+AGG | - | chr7_1:72082678-72082697 | Msa1035970:CDS | 30.0% | |
| AAGGGTTTAAGTACTTCTTT+AGG | - | chr7_1:72082727-72082746 | Msa1035970:CDS | 30.0% | |
| AGGGTTTAAGTACTTCTTTA+GGG | - | chr7_1:72082728-72082747 | Msa1035970:CDS | 30.0% | |
| AATACATATGTTCTCTTGTG+AGG | - | chr7_1:72082769-72082788 | Msa1035970:CDS | 30.0% | |
| ATACATATGTTCTCTTGTGA+GGG | - | chr7_1:72082770-72082789 | Msa1035970:CDS | 30.0% | |
| CTTAATTTCCTGCATTCTAT+CGG | + | chr7_1:72083021-72083040 | None:intergenic | 30.0% | |
| AATTACAGCATGTTGTTACA+AGG | - | chr7_1:72083158-72083177 | Msa1035970:CDS | 30.0% | |
| AGATTCATTGATATTGTGAC+AGG | - | chr7_1:72083200-72083219 | Msa1035970:CDS | 30.0% | |
| !!! | TTTTTCAAGCTCTCACAAAA+CGG | - | chr7_1:72083269-72083288 | Msa1035970:CDS | 30.0% |
| GGAAATGTTAGAAATTTAGG+TGG | - | chr7_1:72083305-72083324 | Msa1035970:CDS | 30.0% | |
| GTGATAAGAGAATATGTAGT+TGG | - | chr7_1:72083332-72083351 | Msa1035970:CDS | 30.0% | |
| ATAAGAGAATATGTAGTTGG+TGG | - | chr7_1:72083335-72083354 | Msa1035970:CDS | 30.0% | |
| TAAGAGAATATGTAGTTGGT+GGG | - | chr7_1:72083336-72083355 | Msa1035970:CDS | 30.0% | |
| TTCGTGTTTGTGATTAAAAG+TGG | + | chr7_1:72083429-72083448 | None:intergenic | 30.0% | |
| AAATCCTTAGTAAGGTTATG+TGG | - | chr7_1:72083501-72083520 | Msa1035970:intron | 30.0% | |
| ! | CTTGGCAATTTCTTTTTATC+AGG | + | chr7_1:72083530-72083549 | None:intergenic | 30.0% |
| ATTCTAAATAAGATGGACAG+AGG | + | chr7_1:72083762-72083781 | None:intergenic | 30.0% | |
| ! | TTCTCTTATCCCATTGTTTT+TGG | - | chr7_1:72083856-72083875 | Msa1035970:intron | 30.0% |
| ! | TTCTTTGGTTTCTTCTGGAT+GGG | + | chr7_1:72082124-72082143 | None:intergenic | 35.0% |
| ! | TCTTCTTCTTTGGTTTCTTC+TGG | + | chr7_1:72082129-72082148 | None:intergenic | 35.0% |
| !!! | CCAATCAACTTCATTGGTTT+TGG | + | chr7_1:72082197-72082216 | None:intergenic | 35.0% |
| ! | CCAAAACCAATGAAGTTGAT+TGG | - | chr7_1:72082194-72082213 | Msa1035970:three_prime_UTR | 35.0% |
| ! | AAACCAATGAAGTTGATTGG+TGG | - | chr7_1:72082197-72082216 | Msa1035970:three_prime_UTR | 35.0% |
| ! | AACCAATGAAGTTGATTGGT+GGG | - | chr7_1:72082198-72082217 | Msa1035970:three_prime_UTR | 35.0% |
| AAAGAGAAGAAACCAAACCT+GGG | + | chr7_1:72082252-72082271 | None:intergenic | 35.0% | |
| AAAAGAGAAGAAACCAAACC+TGG | + | chr7_1:72082253-72082272 | None:intergenic | 35.0% | |
| ! | AAAGACCCATGATTTTCTCA+CGG | - | chr7_1:72082464-72082483 | Msa1035970:CDS | 35.0% |
| TACCTAATGATGAGTCACAA+GGG | - | chr7_1:72082709-72082728 | Msa1035970:CDS | 35.0% | |
| ! | TCAATGTTGATAAGTCCTGA+TGG | + | chr7_1:72082816-72082835 | None:intergenic | 35.0% |
| TCAGGACTTATCAACATTGA+AGG | - | chr7_1:72082816-72082835 | Msa1035970:CDS | 35.0% | |
| GACTTATCAACATTGAAGGA+AGG | - | chr7_1:72082820-72082839 | Msa1035970:CDS | 35.0% | |
| ! | AAGTTGCTATTGCTCTTAGA+AGG | - | chr7_1:72082862-72082881 | Msa1035970:CDS | 35.0% |
| AGAATGCAGGAAATTAAGTC+TGG | - | chr7_1:72083023-72083042 | Msa1035970:CDS | 35.0% | |
| !! | TTTTCAAGCTCTCACAAAAC+GGG | - | chr7_1:72083270-72083289 | Msa1035970:CDS | 35.0% |
| ! | GATCCAACACTAGTTTCATA+AGG | + | chr7_1:72083395-72083414 | None:intergenic | 35.0% |
| GAGTTGGAAAATCCTTAGTA+AGG | - | chr7_1:72083493-72083512 | Msa1035970:intron | 35.0% | |
| CAACATGTCAAGATAATGCT+TGG | + | chr7_1:72083548-72083567 | None:intergenic | 35.0% | |
| TTGTCTGATCATCATGATTC+AGG | - | chr7_1:72083623-72083642 | Msa1035970:intron | 35.0% | |
| CATTCCATGTTGTATATGCT+TGG | + | chr7_1:72083711-72083730 | None:intergenic | 35.0% | |
| AGTTGAACAACAAAATCCTG+AGG | + | chr7_1:72083796-72083815 | None:intergenic | 35.0% | |
| ! | TAGAATTCGACTTTTTGCCT+CGG | - | chr7_1:72084030-72084049 | Msa1035970:five_prime_UTR | 35.0% |
| GGCATTCTATTGTTCAACTT+GGG | - | chr7_1:72084051-72084070 | Msa1035970:five_prime_UTR | 35.0% | |
| ! | TTGGGCAGAGTTTCTATTTT+TGG | - | chr7_1:72084069-72084088 | Msa1035970:five_prime_UTR | 35.0% |
| ! | CTTCTTTGGTTTCTTCTGGA+TGG | + | chr7_1:72082125-72082144 | None:intergenic | 40.0% |
| !!! | TCATTGGTTTTGGGTTCAAC+AGG | + | chr7_1:72082187-72082206 | None:intergenic | 40.0% |
| TTCCCACCAATCAACTTCAT+TGG | + | chr7_1:72082203-72082222 | None:intergenic | 40.0% | |
| TTGATTGGTGGGAATCTTTC+TGG | - | chr7_1:72082209-72082228 | Msa1035970:three_prime_UTR | 40.0% | |
| AAGAGAAGAAACCAAACCTG+GGG | + | chr7_1:72082251-72082270 | None:intergenic | 40.0% | |
| TGCCCTTTAATAATGAGGTG+TGG | + | chr7_1:72082411-72082430 | None:intergenic | 40.0% | |
| TCGTGGTCCAATTTAATCTC+TGG | + | chr7_1:72082583-72082602 | None:intergenic | 40.0% | |
| !! | TGGAGACGGTGTTATTGATA+TGG | - | chr7_1:72082650-72082669 | Msa1035970:CDS | 40.0% |
| GTACCTAATGATGAGTCACA+AGG | - | chr7_1:72082708-72082727 | Msa1035970:CDS | 40.0% | |
| AACCCTTGTGACTCATCATT+AGG | + | chr7_1:72082714-72082733 | None:intergenic | 40.0% | |
| ! | ATGTTGATAAGTCCTGATGG+AGG | + | chr7_1:72082813-72082832 | None:intergenic | 40.0% |
| TGCTATTGCTCTTAGAAGGT+TGG | - | chr7_1:72082866-72082885 | Msa1035970:CDS | 40.0% | |
| !!! | TCTGGTTTTGAAGCGTTGTA+TGG | - | chr7_1:72083041-72083060 | Msa1035970:CDS | 40.0% |
| ! | TATGGTTTGCCTAATTGCTG+TGG | - | chr7_1:72083059-72083078 | Msa1035970:CDS | 40.0% |
| TCAATAGCTCCACAGCAATT+AGG | + | chr7_1:72083071-72083090 | None:intergenic | 40.0% | |
| CTGTTCAAACCTCAGATGAT+TGG | - | chr7_1:72083120-72083139 | Msa1035970:CDS | 40.0% | |
| TTGATCACACCAATCATCTG+AGG | + | chr7_1:72083132-72083151 | None:intergenic | 40.0% | |
| ATATTGTGACAGGTTTGCCT+GGG | - | chr7_1:72083210-72083229 | Msa1035970:CDS | 40.0% | |
| TTTCAAGCTCTCACAAAACG+GGG | - | chr7_1:72083271-72083290 | Msa1035970:CDS | 40.0% | |
| ACAGTTATCCTCTTCTTCCA+TGG | - | chr7_1:72083360-72083379 | Msa1035970:CDS | 40.0% | |
| ACGCCTTATGAAACTAGTGT+TGG | - | chr7_1:72083389-72083408 | Msa1035970:CDS | 40.0% | |
| GTCTCCACATAACCTTACTA+AGG | + | chr7_1:72083508-72083527 | None:intergenic | 40.0% | |
| CAATGCAACCTCTGGATTTA+AGG | + | chr7_1:72083606-72083625 | None:intergenic | 40.0% | |
| CTTGCTTGCAATACTGTTCT+CGG | + | chr7_1:72083652-72083671 | None:intergenic | 40.0% | |
| TTGGCCAAGCATATACAACA+TGG | - | chr7_1:72083704-72083723 | Msa1035970:intron | 40.0% | |
| GGAATGCAATTAGATGCTCA+TGG | - | chr7_1:72083725-72083744 | Msa1035970:intron | 40.0% | |
| !! | AGAATTTGACTTTTGGCCTC+AGG | - | chr7_1:72083777-72083796 | Msa1035970:intron | 40.0% |
| GACATTAGGATTCATTGAGC+TGG | + | chr7_1:72083952-72083971 | None:intergenic | 40.0% | |
| AGTTGAACAATAGAATGCCG+AGG | + | chr7_1:72084050-72084069 | None:intergenic | 40.0% | |
| CGGCATTCTATTGTTCAACT+TGG | - | chr7_1:72084050-72084069 | Msa1035970:five_prime_UTR | 40.0% | |
| AGCTTGACTTCACTGTTCAC+TGG | - | chr7_1:72082048-72082067 | Msa1035970:three_prime_UTR | 45.0% | |
| GGAACAACCGAGTCAATCAA+TGG | - | chr7_1:72082096-72082115 | Msa1035970:three_prime_UTR | 45.0% | |
| !! | ATGGGTGCCATTGATTGACT+CGG | + | chr7_1:72082106-72082125 | None:intergenic | 45.0% |
| TGGGTTCAACAGGAACAACA+AGG | + | chr7_1:72082177-72082196 | None:intergenic | 45.0% | |
| CACAAAAATTCTACTGCCCC+AGG | - | chr7_1:72082232-72082251 | Msa1035970:three_prime_UTR | 45.0% | |
| AAATTCTACTGCCCCAGGTT+TGG | - | chr7_1:72082237-72082256 | Msa1035970:three_prime_UTR | 45.0% | |
| TTGGGCCGTGAGAAAATCAT+GGG | + | chr7_1:72082472-72082491 | None:intergenic | 45.0% | |
| ATTGGGCCGTGAGAAAATCA+TGG | + | chr7_1:72082473-72082492 | None:intergenic | 45.0% | |
| TGGACCACGAGAAAATTGTG+AGG | - | chr7_1:72082593-72082612 | Msa1035970:CDS | 45.0% | |
| GGACCACGAGAAAATTGTGA+GGG | - | chr7_1:72082594-72082613 | Msa1035970:CDS | 45.0% | |
| ! | AGTCCCTCACAATTTTCTCG+TGG | + | chr7_1:72082600-72082619 | None:intergenic | 45.0% |
| CATATGTTCTCTTGTGAGGG+AGG | - | chr7_1:72082773-72082792 | Msa1035970:CDS | 45.0% | |
| CTCATATCAAGACCTCCATC+AGG | - | chr7_1:72082798-72082817 | Msa1035970:CDS | 45.0% | |
| ATCTGGCGAATCTCAAGTCT+CGG | - | chr7_1:72082890-72082909 | Msa1035970:CDS | 45.0% | |
| !! | GTTGGAGCTTCTTTTGGTGT+TGG | - | chr7_1:72082912-72082931 | Msa1035970:CDS | 45.0% |
| GCGCTAAACGTCATCTGAAT+TGG | - | chr7_1:72082988-72083007 | Msa1035970:CDS | 45.0% | |
| TCCTGCATTCTATCGGAATC+AGG | + | chr7_1:72083014-72083033 | None:intergenic | 45.0% | |
| ACATGTCGTGATGACACTTC+CGG | - | chr7_1:72083097-72083116 | Msa1035970:CDS | 45.0% | |
| ! | TCATCTGAGGTTTGAACAGC+CGG | + | chr7_1:72083119-72083138 | None:intergenic | 45.0% |
| GATATTGTGACAGGTTTGCC+TGG | - | chr7_1:72083209-72083228 | Msa1035970:CDS | 45.0% | |
| TATTGTGACAGGTTTGCCTG+GGG | - | chr7_1:72083211-72083230 | Msa1035970:CDS | 45.0% | |
| GTCATAAGCCATGGAAGAAG+AGG | + | chr7_1:72083371-72083390 | None:intergenic | 45.0% | |
| ! | TCATAAGGCGTCATAAGCCA+TGG | + | chr7_1:72083380-72083399 | None:intergenic | 45.0% |
| TGCAAGACTACTTGCAGTGA+GGG | - | chr7_1:72083451-72083470 | Msa1035970:intron | 45.0% | |
| ! | AGGGCACTTTCACTGTTGAA+GGG | - | chr7_1:72083470-72083489 | Msa1035970:intron | 45.0% |
| TTTCACTGTTGAAGGGGAGT+TGG | - | chr7_1:72083477-72083496 | Msa1035970:intron | 45.0% | |
| TGGAGACACCTTAAATCCAG+AGG | - | chr7_1:72083595-72083614 | Msa1035970:intron | 45.0% | |
| TGATCAGACAATGCAACCTC+TGG | + | chr7_1:72083614-72083633 | None:intergenic | 45.0% | |
| !! | TGCAAGCAAGTTGATCCTTC+AGG | - | chr7_1:72083662-72083681 | Msa1035970:intron | 45.0% |
| !! | AGCAAGTTGATCCTTCAGGA+AGG | - | chr7_1:72083666-72083685 | Msa1035970:intron | 45.0% |
| AAGGACCGTGCGAGAAAATT+TGG | - | chr7_1:72083685-72083704 | Msa1035970:intron | 45.0% | |
| ! | CTTGGCCAAATTTTCTCGCA+CGG | + | chr7_1:72083693-72083712 | None:intergenic | 45.0% |
| GCTCTTAGAAGGTTGGCATC+TGG | - | chr7_1:72082873-72082892 | Msa1035970:CDS | 50.0% | |
| ! | GTCTCGGTTGGAGCTTCTTT+TGG | - | chr7_1:72082906-72082925 | Msa1035970:CDS | 50.0% |
| !!! | TTTTGGTGTTGGCCAGTCGA+CGG | - | chr7_1:72082923-72082942 | Msa1035970:CDS | 50.0% |
| !! | GGTGACTTGGAGGTTTGTTG+AGG | - | chr7_1:72082953-72082972 | Msa1035970:CDS | 50.0% |
| GCCTGATTCCGATAGAATGC+AGG | - | chr7_1:72083010-72083029 | Msa1035970:CDS | 50.0% | |
| ATTGTGACAGGTTTGCCTGG+GGG | - | chr7_1:72083212-72083231 | Msa1035970:CDS | 50.0% | |
| CGTGAAAATGTCATTCCCCC+AGG | + | chr7_1:72083230-72083249 | None:intergenic | 50.0% | |
| !! | CAAAACGGGGAGCGTTTGAA+TGG | - | chr7_1:72083284-72083303 | Msa1035970:CDS | 50.0% |
| CTGCAAGACTACTTGCAGTG+AGG | - | chr7_1:72083450-72083469 | Msa1035970:intron | 50.0% | |
| !! | GAGGGCACTTTCACTGTTGA+AGG | - | chr7_1:72083469-72083488 | Msa1035970:intron | 50.0% |
| GGGCACTTTCACTGTTGAAG+GGG | - | chr7_1:72083471-72083490 | Msa1035970:intron | 50.0% | |
| ! | GTCTCAGCTGAAGCTGGTCT+GGG | - | chr7_1:72082075-72082094 | Msa1035970:three_prime_UTR | 55.0% |
| GGCGAATCTCAAGTCTCGGT+TGG | - | chr7_1:72082894-72082913 | Msa1035970:CDS | 55.0% | |
| TCACCTGTGAAACCGTCGAC+TGG | + | chr7_1:72082938-72082957 | None:intergenic | 55.0% | |
| CGACGGTTTCACAGGTGACT+TGG | - | chr7_1:72082940-72082959 | Msa1035970:CDS | 55.0% | |
| ! | CGGTTTCACAGGTGACTTGG+AGG | - | chr7_1:72082943-72082962 | Msa1035970:CDS | 55.0% |
| !! | GAGGTTTGTTGAGGCGCTTG+AGG | - | chr7_1:72082962-72082981 | Msa1035970:CDS | 55.0% |
| GGTCTCGTCTCAGCTGAAGC+TGG | - | chr7_1:72082069-72082088 | Msa1035970:three_prime_UTR | 60.0% | |
| CGTCTCAGCTGAAGCTGGTC+TGG | - | chr7_1:72082074-72082093 | Msa1035970:three_prime_UTR | 60.0% | |
| TGGCCAGTCGACGGTTTCAC+AGG | - | chr7_1:72082932-72082951 | Msa1035970:CDS | 60.0% | |
| TCTCGCACGGTCCTTCCTGA+AGG | + | chr7_1:72083680-72083699 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 72082012 | 72084098 | 72082012 | ID=Msa1035970;Name=Msa1035970 |
| chr7_1 | mRNA | 72082012 | 72084098 | 72082012 | ID=Msa1035970-mRNA-1;Parent=Msa1035970;Name=Msa1035970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=103|1|1|1|1|1|2|320|405 |
| chr7_1 | exon | 72082012 | 72083410 | 72082012 | ID=Msa1035970-mRNA-1:exon:17546;Parent=Msa1035970-mRNA-1 |
| chr7_1 | exon | 72083857 | 72084098 | 72083857 | ID=Msa1035970-mRNA-1:exon:17545;Parent=Msa1035970-mRNA-1 |
| chr7_1 | five_prime_UTR | 72083996 | 72084098 | 72083996 | ID=Msa1035970-mRNA-1:five_prime_utr;Parent=Msa1035970-mRNA-1 |
| chr7_1 | CDS | 72083857 | 72083995 | 72083857 | ID=Msa1035970-mRNA-1:cds;Parent=Msa1035970-mRNA-1 |
| chr7_1 | CDS | 72082332 | 72083410 | 72082332 | ID=Msa1035970-mRNA-1:cds;Parent=Msa1035970-mRNA-1 |
| chr7_1 | three_prime_UTR | 72082012 | 72082331 | 72082012 | ID=Msa1035970-mRNA-1:three_prime_utr;Parent=Msa1035970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
