Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309790 | sp|O80506|FLZ3_ARATH | 54.878 | 82 | 37 | 0 | 34 | 115 | 12 | 93 | 2.68e-28 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309790 | G7LCJ1 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 9.60e-79 | 236 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008110 | Msa1309790 | 0.801717 | 7.892160e-49 | -8.615850e-47 |
| Msa0017510 | Msa1309790 | 0.831891 | 1.291090e-55 | -8.615850e-47 |
| Msa0028420 | Msa1309790 | 0.816075 | 6.666752e-52 | -8.615850e-47 |
| Msa0032430 | Msa1309790 | 0.800890 | 1.165641e-48 | -8.615850e-47 |
| Msa0032920 | Msa1309790 | -0.803815 | 2.910791e-49 | -8.615850e-47 |
| Msa0032960 | Msa1309790 | -0.802732 | 4.877957e-49 | -8.615850e-47 |
| Msa0036850 | Msa1309790 | 0.805493 | 1.299962e-49 | -8.615850e-47 |
| Msa0047030 | Msa1309790 | 0.816496 | 5.368100e-52 | -8.615850e-47 |
| Msa0078650 | Msa1309790 | 0.804219 | 2.399452e-49 | -8.615850e-47 |
| Msa0089630 | Msa1309790 | 0.832841 | 7.509292e-56 | -8.615850e-47 |
| Msa0092790 | Msa1309790 | 0.824616 | 7.327331e-54 | -8.615850e-47 |
| Msa0110970 | Msa1309790 | 0.834162 | 3.514579e-56 | -8.615850e-47 |
| Msa0608320 | Msa1309790 | 0.812107 | 5.007488e-51 | -8.615850e-47 |
| Msa0615710 | Msa1309790 | 0.816907 | 4.341160e-52 | -8.615850e-47 |
| Msa0626450 | Msa1309790 | 0.818107 | 2.329463e-52 | -8.615850e-47 |
| Msa0626490 | Msa1309790 | 0.817187 | 3.756408e-52 | -8.615850e-47 |
| Msa0650020 | Msa1309790 | 0.806278 | 8.890470e-50 | -8.615850e-47 |
| Msa0657970 | Msa1309790 | 0.801411 | 9.118445e-49 | -8.615850e-47 |
| Msa0664600 | Msa1309790 | 0.814786 | 1.290495e-51 | -8.615850e-47 |
| Msa0677410 | Msa1309790 | 0.800788 | 1.222742e-48 | -8.615850e-47 |
| Msa0682330 | Msa1309790 | 0.830130 | 3.493189e-55 | -8.615850e-47 |
| Msa0689520 | Msa1309790 | 0.813125 | 2.998130e-51 | -8.615850e-47 |
| Msa0708520 | Msa1309790 | 0.810581 | 1.073614e-50 | -8.615850e-47 |
| Msa0730430 | Msa1309790 | 0.841806 | 3.801212e-58 | -8.615850e-47 |
| Msa0754520 | Msa1309790 | 0.805820 | 1.109675e-49 | -8.615850e-47 |
| Msa0770720 | Msa1309790 | 0.827685 | 1.364610e-54 | -8.615850e-47 |
| Msa0806790 | Msa1309790 | 0.813276 | 2.777603e-51 | -8.615850e-47 |
| Msa0828560 | Msa1309790 | 0.808253 | 3.391553e-50 | -8.615850e-47 |
| Msa0833220 | Msa1309790 | 0.806791 | 6.929046e-50 | -8.615850e-47 |
| Msa0124060 | Msa1309790 | 0.836809 | 7.525883e-57 | -8.615850e-47 |
| Msa0157290 | Msa1309790 | 0.831561 | 1.556590e-55 | -8.615850e-47 |
| Msa0168500 | Msa1309790 | 0.840726 | 7.307597e-58 | -8.615850e-47 |
| Msa0175780 | Msa1309790 | 0.825915 | 3.611848e-54 | -8.615850e-47 |
| Msa0189290 | Msa1309790 | 0.824934 | 6.168107e-54 | -8.615850e-47 |
| Msa0211150 | Msa1309790 | 0.813307 | 2.735346e-51 | -8.615850e-47 |
| Msa0213280 | Msa1309790 | 0.807077 | 6.028797e-50 | -8.615850e-47 |
| Msa0225320 | Msa1309790 | 0.808355 | 3.225490e-50 | -8.615850e-47 |
| Msa0231650 | Msa1309790 | 0.829894 | 3.987354e-55 | -8.615850e-47 |
| Msa1225700 | Msa1309790 | 0.836561 | 8.708907e-57 | -8.615850e-47 |
| Msa1229500 | Msa1309790 | 0.910050 | 2.889840e-82 | -8.615850e-47 |
| Msa1269480 | Msa1309790 | 0.808237 | 3.418532e-50 | -8.615850e-47 |
| Msa1271990 | Msa1309790 | 0.917591 | 4.407600e-86 | -8.615850e-47 |
| Msa1279380 | Msa1309790 | 0.802588 | 5.223912e-49 | -8.615850e-47 |
| Msa1283860 | Msa1309790 | 0.806013 | 1.010789e-49 | -8.615850e-47 |
| Msa1298820 | Msa1309790 | 0.800512 | 1.392286e-48 | -8.615850e-47 |
| Msa1309790 | Msa1367370 | 0.808163 | 3.544344e-50 | -8.615850e-47 |
| Msa1309790 | Msa1375560 | 0.800997 | 1.108415e-48 | -8.615850e-47 |
| Msa1309790 | Msa1382620 | 0.800784 | 1.224916e-48 | -8.615850e-47 |
| Msa1309790 | Msa1417420 | 0.816562 | 5.188101e-52 | -8.615850e-47 |
| Msa1309790 | Msa1418090 | 0.800669 | 1.293388e-48 | -8.615850e-47 |
| Msa1309790 | Msa1432950 | 0.807683 | 4.484232e-50 | -8.615850e-47 |
| Msa1309790 | Msa1440960 | 0.806123 | 9.583737e-50 | -8.615850e-47 |
| Msa1309790 | Msa1443110 | 0.806427 | 8.268719e-50 | -8.615850e-47 |
| Msa1309790 | Msa1457910 | 0.832969 | 6.979085e-56 | -8.615850e-47 |
| Msa1309790 | Msa1464810 | 0.814154 | 1.779709e-51 | -8.615850e-47 |
| Msa0379770 | Msa1309790 | 0.815290 | 9.971977e-52 | -8.615850e-47 |
| Msa0386850 | Msa1309790 | 0.827483 | 1.526124e-54 | -8.615850e-47 |
| Msa0392510 | Msa1309790 | 0.801904 | 7.225864e-49 | -8.615850e-47 |
| Msa0402650 | Msa1309790 | 0.802365 | 5.808719e-49 | -8.615850e-47 |
| Msa0417270 | Msa1309790 | 0.802491 | 5.471734e-49 | -8.615850e-47 |
| Msa0428150 | Msa1309790 | 0.818837 | 1.591463e-52 | -8.615850e-47 |
| Msa0428590 | Msa1309790 | 0.801332 | 9.467224e-49 | -8.615850e-47 |
| Msa0462500 | Msa1309790 | 0.819673 | 1.026681e-52 | -8.615850e-47 |
| Msa0467490 | Msa1309790 | 0.809330 | 1.995879e-50 | -8.615850e-47 |
| Msa0479170 | Msa1309790 | 0.801738 | 7.815025e-49 | -8.615850e-47 |
| Msa0979730 | Msa1309790 | 0.810205 | 1.294383e-50 | -8.615850e-47 |
| Msa0994950 | Msa1309790 | 0.810976 | 8.816006e-51 | -8.615850e-47 |
| Msa1018690 | Msa1309790 | 0.800099 | 1.689368e-48 | -8.615850e-47 |
| Msa1020670 | Msa1309790 | 0.819178 | 1.331327e-52 | -8.615850e-47 |
| Msa1029250 | Msa1309790 | 0.800825 | 1.201879e-48 | -8.615850e-47 |
| Msa1035970 | Msa1309790 | 0.806500 | 7.981013e-50 | -8.615850e-47 |
| Msa1045140 | Msa1309790 | 0.816781 | 4.633584e-52 | -8.615850e-47 |
| Msa1051830 | Msa1309790 | 0.810073 | 1.381683e-50 | -8.615850e-47 |
| Msa1084960 | Msa1309790 | 0.819474 | 1.139494e-52 | -8.615850e-47 |
| Msa0248970 | Msa1309790 | 0.802607 | 5.176529e-49 | -8.615850e-47 |
| Msa0253700 | Msa1309790 | 0.815166 | 1.062450e-51 | -8.615850e-47 |
| Msa0255090 | Msa1309790 | 0.815349 | 9.674545e-52 | -8.615850e-47 |
| Msa0258330 | Msa1309790 | 0.800336 | 1.511914e-48 | -8.615850e-47 |
| Msa0259380 | Msa1309790 | 0.806227 | 9.113223e-50 | -8.615850e-47 |
| Msa0287740 | Msa1309790 | 0.806233 | 9.085941e-50 | -8.615850e-47 |
| Msa0292330 | Msa1309790 | 0.807688 | 4.472657e-50 | -8.615850e-47 |
| Msa0292400 | Msa1309790 | 0.809536 | 1.802587e-50 | -8.615850e-47 |
| Msa0295070 | Msa1309790 | 0.818470 | 1.927315e-52 | -8.615850e-47 |
| Msa0297740 | Msa1309790 | 0.813576 | 2.387325e-51 | -8.615850e-47 |
| Msa0306300 | Msa1309790 | 0.804606 | 1.992784e-49 | -8.615850e-47 |
| Msa0349710 | Msa1309790 | 0.801752 | 7.764016e-49 | -8.615850e-47 |
| Msa1111090 | Msa1309790 | 0.808607 | 2.849880e-50 | -8.615850e-47 |
| Msa1151910 | Msa1309790 | 0.822886 | 1.863794e-53 | -8.615850e-47 |
| Msa1182860 | Msa1309790 | 0.800882 | 1.169921e-48 | -8.615850e-47 |
| Msa1183120 | Msa1309790 | 0.926197 | 6.522931e-91 | -8.615850e-47 |
| Msa1209460 | Msa1309790 | 0.835907 | 1.276560e-56 | -8.615850e-47 |
| Msa0498060 | Msa1309790 | 0.803162 | 3.976669e-49 | -8.615850e-47 |
| Msa0507680 | Msa1309790 | 0.808122 | 3.617391e-50 | -8.615850e-47 |
| Msa0524190 | Msa1309790 | 0.807516 | 4.866344e-50 | -8.615850e-47 |
| Msa0532070 | Msa1309790 | 0.823034 | 1.721464e-53 | -8.615850e-47 |
| Msa0546680 | Msa1309790 | 0.819294 | 1.252825e-52 | -8.615850e-47 |
| Msa0569200 | Msa1309790 | 0.827183 | 1.801182e-54 | -8.615850e-47 |
| Msa0861870 | Msa1309790 | 0.807599 | 4.672921e-50 | -8.615850e-47 |
| Msa0866270 | Msa1309790 | 0.810438 | 1.152386e-50 | -8.615850e-47 |
| Msa0880140 | Msa1309790 | 0.833362 | 5.571771e-56 | -8.615850e-47 |
| Msa0909120 | Msa1309790 | 0.802798 | 4.728926e-49 | -8.615850e-47 |
| Msa0945110 | Msa1309790 | 0.808951 | 2.406039e-50 | -8.615850e-47 |
| Msa0959140 | Msa1309790 | 0.812958 | 3.262376e-51 | -8.615850e-47 |
| Msa0966400 | Msa1309790 | 0.818421 | 1.977528e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309790 | MtrunA17_Chr8g0336591 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 1.85e-82 | 236 |
| Msa1309790 | MtrunA17_Chr4g0055191 | 52.830 | 106 | 47 | 2 | 1 | 105 | 38 | 141 | 8.80e-32 | 109 |
| Msa1309790 | MtrunA17_Chr5g0400051 | 57.447 | 94 | 29 | 3 | 32 | 115 | 73 | 165 | 1.24e-30 | 107 |
| Msa1309790 | MtrunA17_Chr3g0124361 | 53.571 | 56 | 25 | 1 | 32 | 87 | 118 | 172 | 1.06e-15 | 69.3 |
| Msa1309790 | MtrunA17_Chr8g0344991 | 57.143 | 56 | 22 | 1 | 38 | 93 | 39 | 92 | 2.37e-15 | 66.6 |
| Msa1309790 | MtrunA17_Chr3g0115551 | 48.148 | 54 | 28 | 0 | 29 | 82 | 81 | 134 | 2.54e-14 | 65.1 |
| Msa1309790 | MtrunA17_Chr2g0301141 | 57.407 | 54 | 22 | 1 | 29 | 82 | 177 | 229 | 1.25e-13 | 64.7 |
| Msa1309790 | MtrunA17_Chr2g0295651 | 43.056 | 72 | 32 | 2 | 14 | 78 | 35 | 104 | 1.23e-11 | 57.8 |
| Msa1309790 | MtrunA17_Chr7g0260011 | 53.659 | 41 | 19 | 0 | 37 | 77 | 214 | 254 | 6.12e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309790 | AT2G44670.1 | 54.878 | 82 | 37 | 0 | 34 | 115 | 12 | 93 | 2.72e-29 | 101 |
| Msa1309790 | AT4G17670.1 | 47.368 | 114 | 41 | 4 | 16 | 115 | 51 | 159 | 1.57e-26 | 96.7 |
| Msa1309790 | AT5G47060.2 | 53.571 | 84 | 36 | 2 | 35 | 115 | 94 | 177 | 1.32e-25 | 94.7 |
| Msa1309790 | AT5G47060.1 | 53.571 | 84 | 36 | 2 | 35 | 115 | 94 | 177 | 1.32e-25 | 94.7 |
| Msa1309790 | AT1G78020.1 | 48.529 | 68 | 33 | 1 | 15 | 82 | 68 | 133 | 2.20e-17 | 73.6 |
| Msa1309790 | AT5G65040.1 | 47.541 | 61 | 30 | 1 | 33 | 93 | 54 | 112 | 2.42e-16 | 69.3 |
| Msa1309790 | AT1G22160.1 | 57.778 | 45 | 19 | 0 | 38 | 82 | 78 | 122 | 1.03e-14 | 66.2 |
| Msa1309790 | AT1G53885.1 | 55.319 | 47 | 21 | 0 | 35 | 81 | 39 | 85 | 3.67e-14 | 64.3 |
| Msa1309790 | AT1G53903.1 | 55.319 | 47 | 21 | 0 | 35 | 81 | 39 | 85 | 3.67e-14 | 64.3 |
| Msa1309790 | AT5G49120.1 | 50.000 | 46 | 23 | 0 | 33 | 78 | 63 | 108 | 3.86e-11 | 57.0 |
| Msa1309790 | AT5G20700.1 | 57.778 | 45 | 18 | 1 | 38 | 82 | 182 | 225 | 6.03e-11 | 57.8 |
Find 37 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATAAAACATGCGAGATTT+TGG | 0.201303 | 8_4:+6284760 | None:intergenic |
| AAAGTATCGAAGATACTTTA+TGG | 0.257914 | 8_4:-6283785 | Msa1309790:three_prime_UTR |
| AGAATTTCTAACACCTCTTT+TGG | 0.295222 | 8_4:+6284219 | None:intergenic |
| ACATAAAGATGTCTTTGTTT+TGG | 0.307802 | 8_4:+6284665 | None:intergenic |
| GAGAAGGAGTTGGGAAAAGC+AGG | 0.309590 | 8_4:+6284857 | None:intergenic |
| TCAGAATTCTTCAAACAATA+AGG | 0.335402 | 8_4:-6284188 | Msa1309790:CDS |
| TACTTTATGGAGAATCTAGA+TGG | 0.388164 | 8_4:-6283772 | Msa1309790:three_prime_UTR |
| AGAGATGGAGAGAAGGAGTT+GGG | 0.420733 | 8_4:+6284848 | None:intergenic |
| GAGAGATGGAGAGAAGGAGT+TGG | 0.427645 | 8_4:+6284847 | None:intergenic |
| ATTGTTTGAAGAATTCTGAT+TGG | 0.437983 | 8_4:+6284192 | None:intergenic |
| ATGAATCCAAAGAGAAAAGT+TGG | 0.445108 | 8_4:-6284252 | Msa1309790:CDS |
| TTCTACAAAGATAACAAGCT+TGG | 0.448464 | 8_4:+6284698 | None:intergenic |
| AATGGATCATAAATATTATG+AGG | 0.452370 | 8_4:-6283845 | Msa1309790:three_prime_UTR |
| ATCCTTTCATGTGGTGTCCA+TGG | 0.453453 | 8_4:-6283733 | Msa1309790:three_prime_UTR |
| GGAGAAGGGATTGAAGAAGA+TGG | 0.454187 | 8_4:+6284781 | None:intergenic |
| TGAGTTGAGAGATGGAGAGA+AGG | 0.480551 | 8_4:+6284841 | None:intergenic |
| TGGAAGATTTCAACCAAAAG+AGG | 0.483181 | 8_4:-6284232 | Msa1309790:CDS |
| AAAGAATAGTTAGCAGCCAT+TGG | 0.486211 | 8_4:+6284817 | None:intergenic |
| ACAAAGACATCTTTATGTAC+AGG | 0.489194 | 8_4:-6284660 | Msa1309790:intron |
| TACAAAGATAACAAGCTTGG+AGG | 0.501824 | 8_4:+6284701 | None:intergenic |
| TATCTTTGTAGAAAACCTCT+TGG | 0.507181 | 8_4:-6284688 | Msa1309790:CDS |
| CCATTGGTTGAGTTGAGAGA+TGG | 0.527760 | 8_4:+6284833 | None:intergenic |
| TTCCATGGACACCACATGAA+AGG | 0.529033 | 8_4:+6283731 | None:intergenic |
| ACTTTATGGAGAATCTAGAT+GGG | 0.558477 | 8_4:-6283771 | Msa1309790:three_prime_UTR |
| CCATCTCTCAACTCAACCAA+TGG | 0.563428 | 8_4:-6284833 | Msa1309790:exon |
| CTTTGTTACATCCTTTCATG+TGG | 0.579864 | 8_4:-6283742 | Msa1309790:three_prime_UTR |
| CTGCACTCATTGCTACAGAA+TGG | 0.599412 | 8_4:+6284295 | None:intergenic |
| CATTCTGTAGCAATGAGTGC+AGG | 0.607408 | 8_4:-6284294 | Msa1309790:CDS |
| AGAAGGAGTTGGGAAAAGCA+GGG | 0.626374 | 8_4:+6284858 | None:intergenic |
| GGATCATAAATATTATGAGG+CGG | 0.629799 | 8_4:-6283842 | Msa1309790:three_prime_UTR |
| AAGATCAGAATCAGTTGCAG+TGG | 0.640103 | 8_4:-6284161 | Msa1309790:CDS |
| TAGAATCTAGAATAGATACA+TGG | 0.642392 | 8_4:-6283649 | Msa1309790:three_prime_UTR |
| TAACAAGCTTGGAGGAAGTG+AGG | 0.645660 | 8_4:+6284709 | None:intergenic |
| ATGAAGATTCTGATAAAACA+AGG | 0.650615 | 8_4:-6284039 | Msa1309790:three_prime_UTR |
| AAAATCACATGACATATGAG+TGG | 0.652107 | 8_4:-6284131 | Msa1309790:three_prime_UTR |
| AGATACATGGAATTATGACA+TGG | 0.682329 | 8_4:-6283636 | Msa1309790:three_prime_UTR |
| CTTTATGGAGAATCTAGATG+GGG | 0.689450 | 8_4:-6283770 | Msa1309790:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGATGTAAAATAATTATT+TGG | - | chr8_4:6284088-6284107 | Msa1309790:three_prime_UTR | 10.0% |
| !! | ATGAGAAAAAAATAATAAAA+AGG | + | chr8_4:6284606-6284625 | None:intergenic | 10.0% |
| !! | TTTGATGTAAAATAATTATT+TGG | - | chr8_4:6284088-6284107 | Msa1309790:three_prime_UTR | 10.0% |
| !! | ATGAGAAAAAAATAATAAAA+AGG | + | chr8_4:6284606-6284625 | None:intergenic | 10.0% |
| !!! | AGAGAACTTTTTTAATTATT+TGG | - | chr8_4:6284117-6284136 | Msa1309790:three_prime_UTR | 15.0% |
| !! | TGAAAAAAAAAATTATGAAG+TGG | - | chr8_4:6284413-6284432 | Msa1309790:intron | 15.0% |
| !!! | AGAGAACTTTTTTAATTATT+TGG | - | chr8_4:6284117-6284136 | Msa1309790:three_prime_UTR | 15.0% |
| !! | TGAAAAAAAAAATTATGAAG+TGG | - | chr8_4:6284413-6284432 | Msa1309790:intron | 15.0% |
| !! | AAAGTATAAATATTCATCTG+GGG | + | chr8_4:6283914-6283933 | None:intergenic | 20.0% |
| !! | CAAAGTATAAATATTCATCT+GGG | + | chr8_4:6283915-6283934 | None:intergenic | 20.0% |
| !! | ACAAAGTATAAATATTCATC+TGG | + | chr8_4:6283916-6283935 | None:intergenic | 20.0% |
| !!! | TTTACACTTAATTTTCATGT+AGG | - | chr8_4:6283936-6283955 | Msa1309790:three_prime_UTR | 20.0% |
| !!! | TTATAATTGTGATTTTTCAG+AGG | - | chr8_4:6284176-6284195 | Msa1309790:CDS | 20.0% |
| !!! | TATAATTGTGATTTTTCAGA+GGG | - | chr8_4:6284177-6284196 | Msa1309790:CDS | 20.0% |
| !!! | TATGTCATGTGATTTTAATT+AGG | + | chr8_4:6284366-6284385 | None:intergenic | 20.0% |
| !! | ATAGAAAAAAAAACTCAACA+AGG | - | chr8_4:6284535-6284554 | Msa1309790:intron | 20.0% |
| !!! | ATTTTTTTTCCCATAGAATT+TGG | + | chr8_4:6284639-6284658 | None:intergenic | 20.0% |
| !! | AAATTCTATGGGAAAAAAAA+TGG | - | chr8_4:6284638-6284657 | Msa1309790:intron | 20.0% |
| !! | AATGGATCATAAATATTATG+AGG | - | chr8_4:6284656-6284675 | Msa1309790:intron | 20.0% |
| !!! | TTTTTGTTGTCTCAATTTTA+TGG | + | chr8_4:6284694-6284713 | None:intergenic | 20.0% |
| !!! | ATTCAAAGATAATTTTTCCA+TGG | + | chr8_4:6284788-6284807 | None:intergenic | 20.0% |
| !!! | ATAGATTGAGAATTTTTCTA+CGG | + | chr8_4:6284826-6284845 | None:intergenic | 20.0% |
| !! | AAAGTATAAATATTCATCTG+GGG | + | chr8_4:6283914-6283933 | None:intergenic | 20.0% |
| !! | CAAAGTATAAATATTCATCT+GGG | + | chr8_4:6283915-6283934 | None:intergenic | 20.0% |
| !! | ACAAAGTATAAATATTCATC+TGG | + | chr8_4:6283916-6283935 | None:intergenic | 20.0% |
| !!! | TTTACACTTAATTTTCATGT+AGG | - | chr8_4:6283936-6283955 | Msa1309790:three_prime_UTR | 20.0% |
| !!! | TTATAATTGTGATTTTTCAG+AGG | - | chr8_4:6284176-6284195 | Msa1309790:CDS | 20.0% |
| !!! | TATAATTGTGATTTTTCAGA+GGG | - | chr8_4:6284177-6284196 | Msa1309790:CDS | 20.0% |
| !!! | TATGTCATGTGATTTTAATT+AGG | + | chr8_4:6284366-6284385 | None:intergenic | 20.0% |
| !! | ATAGAAAAAAAAACTCAACA+AGG | - | chr8_4:6284535-6284554 | Msa1309790:intron | 20.0% |
| !!! | ATTTTTTTTCCCATAGAATT+TGG | + | chr8_4:6284639-6284658 | None:intergenic | 20.0% |
| !! | AAATTCTATGGGAAAAAAAA+TGG | - | chr8_4:6284638-6284657 | Msa1309790:intron | 20.0% |
| !! | AATGGATCATAAATATTATG+AGG | - | chr8_4:6284656-6284675 | Msa1309790:intron | 20.0% |
| !!! | TTTTTGTTGTCTCAATTTTA+TGG | + | chr8_4:6284694-6284713 | None:intergenic | 20.0% |
| !!! | ATTCAAAGATAATTTTTCCA+TGG | + | chr8_4:6284788-6284807 | None:intergenic | 20.0% |
| !!! | ATAGATTGAGAATTTTTCTA+CGG | + | chr8_4:6284826-6284845 | None:intergenic | 20.0% |
| !! | TAATAAAACATGCGAGATTT+TGG | + | chr8_4:6283744-6283763 | None:intergenic | 25.0% |
| !!! | AAATCTCGCATGTTTTATTA+TGG | - | chr8_4:6283744-6283763 | Msa1309790:three_prime_UTR | 25.0% |
| !!! | ACATAAAGATGTCTTTGTTT+TGG | + | chr8_4:6283839-6283858 | None:intergenic | 25.0% |
| ! | AAAAAGATGAAGGAAAATTG+AGG | + | chr8_4:6283885-6283904 | None:intergenic | 25.0% |
| ! | ATTGTTTGAAGAATTCTGAT+TGG | + | chr8_4:6284312-6284331 | None:intergenic | 25.0% |
| ! | TCAGAATTCTTCAAACAATA+AGG | - | chr8_4:6284313-6284332 | Msa1309790:intron | 25.0% |
| !! | TTTTATCAGAATCTTCATGA+TGG | + | chr8_4:6284460-6284479 | None:intergenic | 25.0% |
| ! | ATGAAGATTCTGATAAAACA+AGG | - | chr8_4:6284462-6284481 | Msa1309790:intron | 25.0% |
| !!! | CCAACAATTTTTTTTACAAG+AGG | + | chr8_4:6284502-6284521 | None:intergenic | 25.0% |
| ! | CCTCTTGTAAAAAAAATTGT+TGG | - | chr8_4:6284499-6284518 | Msa1309790:intron | 25.0% |
| !! | AAAAACTCAACAAGGAATTT+TGG | - | chr8_4:6284543-6284562 | Msa1309790:intron | 25.0% |
| !! | ATTTTCTCTTCCAAATTCTA+TGG | - | chr8_4:6284626-6284645 | Msa1309790:intron | 25.0% |
| !! | TTTTCTCTTCCAAATTCTAT+GGG | - | chr8_4:6284627-6284646 | Msa1309790:intron | 25.0% |
| !!! | AAAGTATCGAAGATACTTTA+TGG | - | chr8_4:6284716-6284735 | Msa1309790:CDS | 25.0% |
| !! | TAGAATCTAGAATAGATACA+TGG | - | chr8_4:6284852-6284871 | Msa1309790:five_prime_UTR | 25.0% |
| !! | TAATAAAACATGCGAGATTT+TGG | + | chr8_4:6283744-6283763 | None:intergenic | 25.0% |
| !!! | AAATCTCGCATGTTTTATTA+TGG | - | chr8_4:6283744-6283763 | Msa1309790:three_prime_UTR | 25.0% |
| !!! | ACATAAAGATGTCTTTGTTT+TGG | + | chr8_4:6283839-6283858 | None:intergenic | 25.0% |
| ! | AAAAAGATGAAGGAAAATTG+AGG | + | chr8_4:6283885-6283904 | None:intergenic | 25.0% |
| ! | ATTGTTTGAAGAATTCTGAT+TGG | + | chr8_4:6284312-6284331 | None:intergenic | 25.0% |
| ! | TCAGAATTCTTCAAACAATA+AGG | - | chr8_4:6284313-6284332 | Msa1309790:intron | 25.0% |
| !! | TTTTATCAGAATCTTCATGA+TGG | + | chr8_4:6284460-6284479 | None:intergenic | 25.0% |
| ! | ATGAAGATTCTGATAAAACA+AGG | - | chr8_4:6284462-6284481 | Msa1309790:intron | 25.0% |
| !!! | CCAACAATTTTTTTTACAAG+AGG | + | chr8_4:6284502-6284521 | None:intergenic | 25.0% |
| ! | CCTCTTGTAAAAAAAATTGT+TGG | - | chr8_4:6284499-6284518 | Msa1309790:intron | 25.0% |
| !! | AAAAACTCAACAAGGAATTT+TGG | - | chr8_4:6284543-6284562 | Msa1309790:intron | 25.0% |
| !! | ATTTTCTCTTCCAAATTCTA+TGG | - | chr8_4:6284626-6284645 | Msa1309790:intron | 25.0% |
| !! | TTTTCTCTTCCAAATTCTAT+GGG | - | chr8_4:6284627-6284646 | Msa1309790:intron | 25.0% |
| !!! | AAAGTATCGAAGATACTTTA+TGG | - | chr8_4:6284716-6284735 | Msa1309790:CDS | 25.0% |
| !! | TAGAATCTAGAATAGATACA+TGG | - | chr8_4:6284852-6284871 | Msa1309790:five_prime_UTR | 25.0% |
| TTCTACAAAGATAACAAGCT+TGG | + | chr8_4:6283806-6283825 | None:intergenic | 30.0% | |
| TATCTTTGTAGAAAACCTCT+TGG | - | chr8_4:6283813-6283832 | Msa1309790:three_prime_UTR | 30.0% | |
| ACAAAGACATCTTTATGTAC+AGG | - | chr8_4:6283841-6283860 | Msa1309790:three_prime_UTR | 30.0% | |
| GTAGGTCATAACTCATAATA+AGG | - | chr8_4:6283954-6283973 | Msa1309790:three_prime_UTR | 30.0% | |
| ATGAATCCAAAGAGAAAAGT+TGG | - | chr8_4:6284249-6284268 | Msa1309790:CDS | 30.0% | |
| ! | AATCTTCCAACTTTTCTCTT+TGG | + | chr8_4:6284258-6284277 | None:intergenic | 30.0% |
| ! | AGAATTTCTAACACCTCTTT+TGG | + | chr8_4:6284285-6284304 | None:intergenic | 30.0% |
| AAAATCACATGACATATGAG+TGG | - | chr8_4:6284370-6284389 | Msa1309790:intron | 30.0% | |
| GGATCATAAATATTATGAGG+CGG | - | chr8_4:6284659-6284678 | Msa1309790:intron | 30.0% | |
| TACTTTATGGAGAATCTAGA+TGG | - | chr8_4:6284729-6284748 | Msa1309790:CDS | 30.0% | |
| ACTTTATGGAGAATCTAGAT+GGG | - | chr8_4:6284730-6284749 | Msa1309790:CDS | 30.0% | |
| AGATACATGGAATTATGACA+TGG | - | chr8_4:6284865-6284884 | Msa1309790:five_prime_UTR | 30.0% | |
| TTCTACAAAGATAACAAGCT+TGG | + | chr8_4:6283806-6283825 | None:intergenic | 30.0% | |
| TATCTTTGTAGAAAACCTCT+TGG | - | chr8_4:6283813-6283832 | Msa1309790:three_prime_UTR | 30.0% | |
| ACAAAGACATCTTTATGTAC+AGG | - | chr8_4:6283841-6283860 | Msa1309790:three_prime_UTR | 30.0% | |
| GTAGGTCATAACTCATAATA+AGG | - | chr8_4:6283954-6283973 | Msa1309790:three_prime_UTR | 30.0% | |
| ATGAATCCAAAGAGAAAAGT+TGG | - | chr8_4:6284249-6284268 | Msa1309790:CDS | 30.0% | |
| ! | AATCTTCCAACTTTTCTCTT+TGG | + | chr8_4:6284258-6284277 | None:intergenic | 30.0% |
| ! | AGAATTTCTAACACCTCTTT+TGG | + | chr8_4:6284285-6284304 | None:intergenic | 30.0% |
| AAAATCACATGACATATGAG+TGG | - | chr8_4:6284370-6284389 | Msa1309790:intron | 30.0% | |
| GGATCATAAATATTATGAGG+CGG | - | chr8_4:6284659-6284678 | Msa1309790:intron | 30.0% | |
| TACTTTATGGAGAATCTAGA+TGG | - | chr8_4:6284729-6284748 | Msa1309790:CDS | 30.0% | |
| ACTTTATGGAGAATCTAGAT+GGG | - | chr8_4:6284730-6284749 | Msa1309790:CDS | 30.0% | |
| AGATACATGGAATTATGACA+TGG | - | chr8_4:6284865-6284884 | Msa1309790:five_prime_UTR | 30.0% | |
| AAAGAATAGTTAGCAGCCAT+TGG | + | chr8_4:6283687-6283706 | None:intergenic | 35.0% | |
| !! | TCTCGCATGTTTTATTATGG+TGG | - | chr8_4:6283747-6283766 | Msa1309790:three_prime_UTR | 35.0% |
| TACAAAGATAACAAGCTTGG+AGG | + | chr8_4:6283803-6283822 | None:intergenic | 35.0% | |
| TGGAAGATTTCAACCAAAAG+AGG | - | chr8_4:6284269-6284288 | Msa1309790:CDS | 35.0% | |
| CTTTATGGAGAATCTAGATG+GGG | - | chr8_4:6284731-6284750 | Msa1309790:CDS | 35.0% | |
| CTTTGTTACATCCTTTCATG+TGG | - | chr8_4:6284759-6284778 | Msa1309790:CDS | 35.0% | |
| AAAGAATAGTTAGCAGCCAT+TGG | + | chr8_4:6283687-6283706 | None:intergenic | 35.0% | |
| !! | TCTCGCATGTTTTATTATGG+TGG | - | chr8_4:6283747-6283766 | Msa1309790:three_prime_UTR | 35.0% |
| TACAAAGATAACAAGCTTGG+AGG | + | chr8_4:6283803-6283822 | None:intergenic | 35.0% | |
| TGGAAGATTTCAACCAAAAG+AGG | - | chr8_4:6284269-6284288 | Msa1309790:CDS | 35.0% | |
| CTTTATGGAGAATCTAGATG+GGG | - | chr8_4:6284731-6284750 | Msa1309790:CDS | 35.0% | |
| CTTTGTTACATCCTTTCATG+TGG | - | chr8_4:6284759-6284778 | Msa1309790:CDS | 35.0% | |
| !! | ACATGCGAGATTTTGGAGAA+GGG | + | chr8_4:6283737-6283756 | None:intergenic | 40.0% |
| !! | AACATGCGAGATTTTGGAGA+AGG | + | chr8_4:6283738-6283757 | None:intergenic | 40.0% |
| !!! | ATGTCTTTGTTTTGGCCAAG+AGG | + | chr8_4:6283831-6283850 | None:intergenic | 40.0% |
| AAGATCAGAATCAGTTGCAG+TGG | - | chr8_4:6284340-6284359 | Msa1309790:intron | 40.0% | |
| !! | ACATGCGAGATTTTGGAGAA+GGG | + | chr8_4:6283737-6283756 | None:intergenic | 40.0% |
| !! | AACATGCGAGATTTTGGAGA+AGG | + | chr8_4:6283738-6283757 | None:intergenic | 40.0% |
| !!! | ATGTCTTTGTTTTGGCCAAG+AGG | + | chr8_4:6283831-6283850 | None:intergenic | 40.0% |
| AAGATCAGAATCAGTTGCAG+TGG | - | chr8_4:6284340-6284359 | Msa1309790:intron | 40.0% | |
| AGAAGGAGTTGGGAAAAGCA+GGG | + | chr8_4:6283646-6283665 | None:intergenic | 45.0% | |
| AGAGATGGAGAGAAGGAGTT+GGG | + | chr8_4:6283656-6283675 | None:intergenic | 45.0% | |
| ! | TGAGTTGAGAGATGGAGAGA+AGG | + | chr8_4:6283663-6283682 | None:intergenic | 45.0% |
| !! | CCATTGGTTGAGTTGAGAGA+TGG | + | chr8_4:6283671-6283690 | None:intergenic | 45.0% |
| CCATCTCTCAACTCAACCAA+TGG | - | chr8_4:6283668-6283687 | Msa1309790:three_prime_UTR | 45.0% | |
| GGAGAAGGGATTGAAGAAGA+TGG | + | chr8_4:6283723-6283742 | None:intergenic | 45.0% | |
| TAACAAGCTTGGAGGAAGTG+AGG | + | chr8_4:6283795-6283814 | None:intergenic | 45.0% | |
| GGGGTGTGACAAAAAGATGA+AGG | + | chr8_4:6283895-6283914 | None:intergenic | 45.0% | |
| CTGCACTCATTGCTACAGAA+TGG | + | chr8_4:6284209-6284228 | None:intergenic | 45.0% | |
| CATTCTGTAGCAATGAGTGC+AGG | - | chr8_4:6284207-6284226 | Msa1309790:CDS | 45.0% | |
| ATCCTTTCATGTGGTGTCCA+TGG | - | chr8_4:6284768-6284787 | Msa1309790:CDS | 45.0% | |
| TTCCATGGACACCACATGAA+AGG | + | chr8_4:6284773-6284792 | None:intergenic | 45.0% | |
| AGAAGGAGTTGGGAAAAGCA+GGG | + | chr8_4:6283646-6283665 | None:intergenic | 45.0% | |
| AGAGATGGAGAGAAGGAGTT+GGG | + | chr8_4:6283656-6283675 | None:intergenic | 45.0% | |
| ! | TGAGTTGAGAGATGGAGAGA+AGG | + | chr8_4:6283663-6283682 | None:intergenic | 45.0% |
| !! | CCATTGGTTGAGTTGAGAGA+TGG | + | chr8_4:6283671-6283690 | None:intergenic | 45.0% |
| CCATCTCTCAACTCAACCAA+TGG | - | chr8_4:6283668-6283687 | Msa1309790:three_prime_UTR | 45.0% | |
| GGAGAAGGGATTGAAGAAGA+TGG | + | chr8_4:6283723-6283742 | None:intergenic | 45.0% | |
| TAACAAGCTTGGAGGAAGTG+AGG | + | chr8_4:6283795-6283814 | None:intergenic | 45.0% | |
| GGGGTGTGACAAAAAGATGA+AGG | + | chr8_4:6283895-6283914 | None:intergenic | 45.0% | |
| CTGCACTCATTGCTACAGAA+TGG | + | chr8_4:6284209-6284228 | None:intergenic | 45.0% | |
| CATTCTGTAGCAATGAGTGC+AGG | - | chr8_4:6284207-6284226 | Msa1309790:CDS | 45.0% | |
| ATCCTTTCATGTGGTGTCCA+TGG | - | chr8_4:6284768-6284787 | Msa1309790:CDS | 45.0% | |
| TTCCATGGACACCACATGAA+AGG | + | chr8_4:6284773-6284792 | None:intergenic | 45.0% | |
| GAGAAGGAGTTGGGAAAAGC+AGG | + | chr8_4:6283647-6283666 | None:intergenic | 50.0% | |
| GAGAGATGGAGAGAAGGAGT+TGG | + | chr8_4:6283657-6283676 | None:intergenic | 50.0% | |
| GAGAAGGAGTTGGGAAAAGC+AGG | + | chr8_4:6283647-6283666 | None:intergenic | 50.0% | |
| GAGAGATGGAGAGAAGGAGT+TGG | + | chr8_4:6283657-6283676 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 6283634 | 6284889 | 6283634 | ID=Msa1309790;Name=Msa1309790 |
| chr8_4 | mRNA | 6283634 | 6284889 | 6283634 | ID=Msa1309790-mRNA-1;Parent=Msa1309790;Name=Msa1309790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=53|1|1|1|1|1|2|522|115 |
| chr8_4 | exon | 6283634 | 6284327 | 6283634 | ID=Msa1309790-mRNA-1:exon:2109;Parent=Msa1309790-mRNA-1 |
| chr8_4 | exon | 6284661 | 6284889 | 6284661 | ID=Msa1309790-mRNA-1:exon:2108;Parent=Msa1309790-mRNA-1 |
| chr8_4 | five_prime_UTR | 6284837 | 6284889 | 6284837 | ID=Msa1309790-mRNA-1:five_prime_utr;Parent=Msa1309790-mRNA-1 |
| chr8_4 | CDS | 6284661 | 6284836 | 6284661 | ID=Msa1309790-mRNA-1:cds;Parent=Msa1309790-mRNA-1 |
| chr8_4 | CDS | 6284156 | 6284327 | 6284156 | ID=Msa1309790-mRNA-1:cds;Parent=Msa1309790-mRNA-1 |
| chr8_4 | three_prime_UTR | 6283634 | 6284155 | 6283634 | ID=Msa1309790-mRNA-1:three_prime_utr;Parent=Msa1309790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
