AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0160380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160380 MtrunA17_Chr1g0193371 97.568 370 6 3 1 368 1 369 0.0 733
Msa0160380 MtrunA17_Chr7g0271241 57.072 403 115 21 1 368 1 380 3.44e-117 345
Msa0160380 MtrunA17_Chr7g0270891 48.312 385 163 8 1 367 1 367 4.38e-103 308
Msa0160380 MtrunA17_Chr1g0193801 50.372 403 145 17 1 365 1 386 1.48e-102 308
Msa0160380 MtrunA17_Chr4g0058631 71.951 164 44 1 1 162 1 164 1.43e-82 256
Msa0160380 MtrunA17_Chr1g0211161 60.680 206 68 4 3 204 4 200 9.87e-78 238
Msa0160380 MtrunA17_Chr3g0117091 82.946 129 22 0 1 129 1 129 8.04e-77 240
Msa0160380 MtrunA17_Chr2g0330041 72.180 133 37 0 1 133 1 133 3.41e-69 222
Msa0160380 MtrunA17_Chr8g0342521 76.423 123 29 0 1 123 1 123 2.26e-68 219
Msa0160380 MtrunA17_Chr8g0342541 75.610 123 30 0 1 123 1 123 9.74e-68 217
Msa0160380 MtrunA17_Chr2g0309911 70.769 130 37 1 1 130 1 129 1.59e-67 215
Msa0160380 MtrunA17_Chr4g0037141 53.039 181 81 1 1 181 1 177 8.43e-64 205
Msa0160380 MtrunA17_Chr8g0387421 72.034 118 33 0 1 118 1 118 8.03e-63 203
Msa0160380 MtrunA17_Chr6g0453471 62.987 154 50 2 1 154 1 147 9.15e-63 204
Msa0160380 MtrunA17_Chr8g0385321 68.217 129 41 0 1 129 1 129 1.46e-62 202
Msa0160380 MtrunA17_Chr4g0039971 67.969 128 41 0 1 128 2 129 1.53e-62 204
Msa0160380 MtrunA17_Chr3g0115821 64.394 132 47 0 1 132 1 132 2.04e-62 203
Msa0160380 MtrunA17_Chr7g0217741 68.939 132 41 0 1 132 1 132 3.33e-62 201
Msa0160380 MtrunA17_Chr3g0131121 65.649 131 45 0 1 131 1 131 3.47e-62 201
Msa0160380 MtrunA17_Chr8g0342481 76.068 117 27 1 1 116 1 117 4.89e-62 204
Msa0160380 MtrunA17_Chr4g0042671 70.312 128 38 0 1 128 1 128 2.88e-61 202
Msa0160380 MtrunA17_Chr8g0349261 68.182 132 40 2 1 130 1 132 5.02e-61 198
Msa0160380 MtrunA17_Chr5g0435101 65.600 125 43 0 3 127 2 126 5.57e-61 195
Msa0160380 MtrunA17_Chr5g0434571 53.125 192 62 3 1 169 37 223 6.07e-61 199
Msa0160380 MtrunA17_Chr3g0110351 66.923 130 43 0 1 130 1 130 1.95e-60 197
Msa0160380 MtrunA17_Chr7g0228891 55.357 168 72 2 1 165 1 168 1.98e-60 196
Msa0160380 MtrunA17_Chr5g0410961 64.122 131 47 0 1 131 1 131 2.04e-60 198
Msa0160380 MtrunA17_Chr5g0397231 74.545 110 28 0 1 110 1 110 3.11e-60 197
Msa0160380 MtrunA17_Chr1g0203411 69.748 119 36 0 1 119 1 119 1.02e-59 194
Msa0160380 MtrunA17_Chr4g0032401 80.374 107 21 0 11 117 16 122 1.14e-59 196
Msa0160380 MtrunA17_Chr2g0328771 79.245 106 22 0 12 117 20 125 1.41e-59 195
Msa0160380 MtrunA17_Chr4g0057031 64.122 131 47 0 1 131 1 131 5.11e-59 192
Msa0160380 MtrunA17_Chr5g0395281 68.333 120 38 0 12 131 12 131 1.04e-58 192
Msa0160380 MtrunA17_Chr2g0281071 65.891 129 43 1 1 128 1 129 1.31e-58 193
Msa0160380 MtrunA17_Chr3g0088461 78.899 109 23 0 9 117 19 127 1.54e-58 193
Msa0160380 MtrunA17_Chr2g0323411 67.969 128 41 0 1 128 1 128 1.64e-58 192
Msa0160380 MtrunA17_Chr6g0452271 52.047 171 78 2 1 169 1 169 2.55e-58 192
Msa0160380 MtrunA17_Chr3g0103281 54.878 164 70 1 1 160 1 164 6.66e-58 191
Msa0160380 MtrunA17_Chr4g0048511 65.116 129 44 1 1 128 1 129 6.94e-58 192
Msa0160380 MtrunA17_Chr4g0044421 64.286 126 45 0 1 126 1 126 1.25e-56 183
Msa0160380 MtrunA17_Chr1g0203441 72.269 119 32 1 9 127 10 127 9.67e-56 183
Msa0160380 MtrunA17_Chr1g0187761 68.067 119 38 0 1 119 1 119 1.55e-55 182
Msa0160380 MtrunA17_Chr6g0470971 64.444 135 47 1 9 142 11 145 4.47e-54 179
Msa0160380 MtrunA17_Chr1g0167661 67.241 116 38 0 1 116 1 116 3.53e-53 176
Msa0160380 MtrunA17_Chr3g0121241 62.903 124 46 0 6 129 36 159 1.18e-52 176
Msa0160380 MtrunA17_Chr7g0274581 60.331 121 48 0 1 121 1 121 1.28e-52 173
Msa0160380 MtrunA17_Chr1g0167691 66.379 116 39 0 1 116 1 116 1.59e-52 174
Msa0160380 MtrunA17_Chr5g0417821 65.546 119 41 0 12 130 7 125 5.31e-52 174
Msa0160380 MtrunA17_Chr7g0261281 64.407 118 42 0 1 118 1 118 8.16e-52 174
Msa0160380 MtrunA17_Chr8g0342511 81.609 87 16 0 1 87 1 87 2.13e-50 164
Msa0160380 MtrunA17_Chr4g0070611 61.864 118 45 0 1 118 1 118 3.39e-50 170
Msa0160380 MtrunA17_Chr2g0323351 62.931 116 43 0 1 116 1 116 3.83e-50 168
Msa0160380 MtrunA17_Chr8g0342531 79.775 89 18 0 1 89 1 89 5.01e-50 165
Msa0160380 MtrunA17_Chr4g0068061 65.517 116 40 0 1 116 1 116 6.74e-50 170
Msa0160380 MtrunA17_Chr4g0022931 61.538 117 45 0 5 121 6 122 7.35e-50 168
Msa0160380 MtrunA17_Chr4g0070641 62.393 117 44 0 1 117 1 117 1.59e-49 164
Msa0160380 MtrunA17_Chr8g0346561 61.345 119 46 0 1 119 1 119 5.75e-49 167
Msa0160380 MtrunA17_Chr4g0022901 63.964 111 40 0 5 115 6 116 1.10e-48 165
Msa0160380 MtrunA17_Chr1g0151941 51.852 135 61 2 1 134 1 132 2.09e-48 164
Msa0160380 MtrunA17_Chr2g0311221 64.220 109 39 0 2 110 4 112 2.52e-48 166
Msa0160380 MtrunA17_Chr1g0152011 46.512 172 83 2 1 163 1 172 4.11e-48 166
Msa0160380 MtrunA17_Chr7g0275911 60.684 117 46 0 1 117 1 117 6.11e-48 163
Msa0160380 MtrunA17_Chr5g0400821 44.809 183 96 3 1 182 1 179 1.25e-47 164
Msa0160380 MtrunA17_Chr4g0028311 62.393 117 43 1 1 116 1 117 2.91e-47 163
Msa0160380 MtrunA17_Chr7g0217221 59.664 119 48 0 1 119 1 119 2.91e-47 161
Msa0160380 MtrunA17_Chr3g0135311 59.829 117 46 1 1 116 1 117 7.31e-47 162
Msa0160380 MtrunA17_Chr4g0022911 59.483 116 46 1 1 115 1 116 8.38e-47 161
Msa0160380 MtrunA17_Chr1g0194951 63.793 116 42 0 1 116 1 116 9.74e-47 163
Msa0160380 MtrunA17_Chr2g0327351 63.964 111 39 1 1 110 1 111 6.67e-46 159
Msa0160380 MtrunA17_Chr7g0254411 48.466 163 73 2 1 161 1 154 1.45e-45 159
Msa0160380 MtrunA17_Chr4g0060721 47.059 170 81 3 1 164 2 168 1.64e-45 159
Msa0160380 MtrunA17_Chr8g0342461 74.444 90 22 1 1 89 1 90 2.19e-45 152
Msa0160380 MtrunA17_Chr4g0054391 62.727 110 40 1 1 109 1 110 6.15e-45 156
Msa0160380 MtrunA17_Chr7g0264641 58.974 117 47 1 1 116 1 117 7.06e-45 155
Msa0160380 MtrunA17_Chr3g0092401 58.475 118 49 0 1 118 2 119 7.07e-45 156
Msa0160380 MtrunA17_Chr8g0342471 74.444 90 22 1 1 89 1 90 7.98e-45 151
Msa0160380 MtrunA17_Chr3g0099131 63.551 107 39 0 12 118 41 147 2.66e-44 160
Msa0160380 MtrunA17_Chr7g0247131 63.889 108 38 1 43 149 9 116 4.24e-44 153
Msa0160380 MtrunA17_Chr6g0453211 60.909 110 43 0 1 110 1 110 9.90e-44 154
Msa0160380 MtrunA17_Chr7g0228231 57.025 121 50 1 1 119 1 121 9.90e-44 150
Msa0160380 MtrunA17_Chr1g0186061 61.261 111 43 0 5 115 13 123 1.05e-43 152
Msa0160380 MtrunA17_Chr4g0022881 61.321 106 41 0 9 114 9 114 1.30e-43 150
Msa0160380 MtrunA17_Chr1g0168661 58.772 114 47 0 4 117 13 126 2.57e-43 150
Msa0160380 MtrunA17_Chr1g0209661 53.659 123 57 0 11 133 26 148 4.19e-43 152
Msa0160380 MtrunA17_Chr6g0450101 60.185 108 43 0 11 118 13 120 4.81e-43 149
Msa0160380 MtrunA17_Chr4g0022891 61.905 105 40 0 9 113 9 113 5.27e-43 149
Msa0160380 MtrunA17_Chr4g0055981 47.403 154 78 1 9 159 52 205 1.86e-42 147
Msa0160380 MtrunA17_Chr7g0269831 63.793 116 42 0 1 116 1 116 2.03e-42 151
Msa0160380 MtrunA17_Chr4g0072751 58.559 111 45 1 1 110 1 111 4.60e-42 150
Msa0160380 MtrunA17_Chr1g0194301 55.172 116 52 0 12 127 33 148 1.00e-41 147
Msa0160380 MtrunA17_Chr6g0487491 54.839 124 47 2 1 115 1 124 1.39e-41 146
Msa0160380 MtrunA17_Chr8g0354661 61.321 106 41 0 12 117 37 142 1.58e-41 152
Msa0160380 MtrunA17_Chr3g0080861 59.434 106 43 0 12 117 37 142 3.22e-41 151
Msa0160380 MtrunA17_Chr1g0154031 61.321 106 41 0 12 117 76 181 5.86e-41 149
Msa0160380 MtrunA17_Chr1g0180391 47.853 163 69 4 12 173 19 166 1.36e-40 143
Msa0160380 MtrunA17_Chr8g0343831 58.716 109 45 0 10 118 6 114 1.41e-40 143
Msa0160380 MtrunA17_Chr1g0194291 57.018 114 49 0 12 125 21 134 7.29e-40 142
Msa0160380 MtrunA17_Chr4g0042611 65.909 88 30 0 1 88 1 88 9.88e-40 135
Msa0160380 MtrunA17_Chr2g0322521 62.264 106 40 0 12 117 29 134 6.14e-39 143
Msa0160380 MtrunA17_Chr7g0240821 58.000 100 42 0 17 116 6 105 4.82e-37 133
Msa0160380 MtrunA17_Chr5g0434831 57.143 105 45 0 12 116 7 111 7.74e-37 132
Msa0160380 MtrunA17_Chr5g0434931 54.286 105 48 0 12 116 35 139 2.99e-36 133
Msa0160380 MtrunA17_Chr5g0434911 52.727 110 52 0 7 116 16 125 3.23e-36 132
Msa0160380 MtrunA17_Chr1g0192411 47.368 152 67 3 11 156 11 155 8.60e-36 134
Msa0160380 MtrunA17_Chr2g0327821 51.402 107 52 0 9 115 3 109 8.87e-36 130
Msa0160380 MtrunA17_Chr2g0294811 62.500 88 33 0 1 88 1 88 9.74e-36 126
Msa0160380 MtrunA17_Chr5g0440781 51.786 112 52 2 13 123 13 123 2.10e-35 128
Msa0160380 MtrunA17_Chr2g0293911 54.310 116 53 0 12 127 24 139 2.56e-35 132
Msa0160380 MtrunA17_Chr4g0030881 52.212 113 47 1 13 118 8 120 3.10e-35 129
Msa0160380 MtrunA17_Chr4g0068921 55.263 114 51 0 12 125 24 137 3.76e-35 127
Msa0160380 MtrunA17_Chr7g0220341 46.377 138 60 2 12 147 25 150 4.27e-35 129
Msa0160380 MtrunA17_Chr5g0441141 51.786 112 52 2 13 123 13 123 1.16e-34 128
Msa0160380 MtrunA17_Chr5g0440761 51.786 112 52 2 13 123 13 123 1.18e-34 128
Msa0160380 MtrunA17_Chr5g0434841 54.286 105 48 0 12 116 20 124 1.77e-34 129
Msa0160380 MtrunA17_Chr8g0360111 56.436 101 44 0 12 112 25 125 2.27e-34 127
Msa0160380 MtrunA17_Chr7g0228991 53.333 105 49 0 12 116 29 133 7.30e-34 126
Msa0160380 MtrunA17_Chr2g0323321 61.628 86 33 0 7 92 6 91 1.70e-33 120
Msa0160380 MtrunA17_Chr5g0441131 50.000 112 54 2 13 123 10 120 9.67e-33 120
Msa0160380 MtrunA17_Chr8g0334881 51.818 110 52 1 9 117 7 116 1.23e-32 124
Msa0160380 MtrunA17_Chr3g0099141 60.241 83 33 0 12 94 40 122 1.48e-32 119
Msa0160380 MtrunA17_Chr4g0013361 42.581 155 84 3 12 164 10 161 1.62e-32 123
Msa0160380 MtrunA17_Chr5g0395221 65.000 80 28 0 9 88 9 88 2.67e-32 116
Msa0160380 MtrunA17_Chr3g0093811 58.889 90 37 0 43 132 13 102 7.08e-31 118
Msa0160380 MtrunA17_Chr4g0008551 44.667 150 64 5 14 158 38 173 9.62e-30 117
Msa0160380 MtrunA17_Chr5g0401731 50.427 117 55 2 14 129 15 129 1.54e-29 116
Msa0160380 MtrunA17_Chr4g0053431 52.941 102 47 1 14 115 5 105 3.74e-28 111
Msa0160380 MtrunA17_Chr5g0429661 33.929 224 108 8 12 226 120 312 4.68e-28 112
Msa0160380 MtrunA17_Chr6g0454921 52.427 103 46 2 14 115 15 115 2.99e-27 107
Msa0160380 MtrunA17_Chr7g0238631 49.533 107 51 2 11 116 110 214 1.27e-26 110
Msa0160380 MtrunA17_Chr3g0133601 51.961 102 48 1 14 115 37 137 3.80e-26 104
Msa0160380 MtrunA17_Chr3g0139671 47.664 107 53 2 11 116 82 186 1.33e-25 108
Msa0160380 MtrunA17_Chr6g0453751 54.839 93 33 2 12 95 20 112 1.46e-25 100
Msa0160380 MtrunA17_Chr3g0117511 44.660 103 54 2 14 115 183 283 4.71e-25 105
Msa0160380 MtrunA17_Chr7g0229101 60.563 71 28 0 43 113 3 73 9.43e-25 100
Msa0160380 MtrunA17_Chr5g0434901 57.746 71 30 0 43 113 4 74 3.44e-24 95.9
Msa0160380 MtrunA17_Chr1g0157731 45.794 107 55 2 11 116 88 192 3.63e-24 104
Msa0160380 MtrunA17_Chr6g0480581 43.396 106 57 2 14 118 4 107 3.92e-24 99.4
Msa0160380 MtrunA17_Chr7g0229131 58.333 72 30 0 43 114 3 74 5.21e-24 97.4
Msa0160380 MtrunA17_Chr5g0417621 42.202 109 60 2 11 118 131 237 5.64e-24 102
Msa0160380 MtrunA17_Chr4g0042501 43.396 106 57 2 14 118 105 208 5.76e-24 102
Msa0160380 MtrunA17_Chr4g0058991 42.593 108 59 2 9 115 204 309 7.25e-24 102
Msa0160380 MtrunA17_Chr5g0437321 50.000 100 47 2 14 112 19 116 1.34e-23 99.0
Msa0160380 MtrunA17_Chr6g0460661 41.509 106 59 2 14 118 16 119 1.38e-23 95.9
Msa0160380 MtrunA17_Chr5g0425591 50.000 84 41 1 13 95 10 93 2.78e-23 92.8
Msa0160380 MtrunA17_Chr1g0177901 48.864 88 41 2 24 111 7 90 2.52e-22 93.6
Msa0160380 MtrunA17_Chr3g0125801 43.396 106 57 2 14 118 16 119 5.20e-22 94.7
Msa0160380 MtrunA17_Chr7g0228531 40.196 102 59 2 14 115 220 319 1.85e-21 95.1
Msa0160380 MtrunA17_Chr5g0397841 45.455 99 51 2 12 109 108 204 2.00e-21 95.5
Msa0160380 MtrunA17_Chr6g0460671 40.566 106 60 2 14 118 99 202 1.04e-20 92.0
Msa0160380 MtrunA17_Chr7g0228401 43.396 106 55 3 25 129 290 391 1.14e-20 93.2
Msa0160380 MtrunA17_Chr7g0254261 36.691 139 83 3 8 143 83 219 5.08e-20 90.1
Msa0160380 MtrunA17_Chr7g0228481 38.182 110 63 3 14 120 220 327 1.51e-19 89.7
Msa0160380 MtrunA17_Chr7g0238651 39.048 105 62 1 17 119 10 114 1.99e-18 85.5
Msa0160380 MtrunA17_Chr7g0233061 35.780 109 64 4 14 119 180 285 3.08e-17 82.0
Msa0160380 MtrunA17_Chr1g0193901 50.562 89 42 2 10 96 9 97 3.13e-17 77.0
Msa0160380 MtrunA17_Chr1g0193891 50.562 89 42 2 10 96 9 97 3.13e-17 77.0
Msa0160380 MtrunA17_Chr1g0193871 50.562 89 42 2 10 96 9 97 3.13e-17 77.0
Msa0160380 MtrunA17_Chr1g0193881 50.562 89 42 2 10 96 9 97 3.13e-17 77.0
Msa0160380 MtrunA17_Chr5g0416341 36.190 105 66 1 17 121 29 132 3.41e-17 82.8
Msa0160380 MtrunA17_Chr8g0362231 35.088 114 72 2 17 130 25 136 2.30e-16 80.1
Msa0160380 MtrunA17_Chr5g0395231 36.691 139 84 2 78 216 5 139 7.25e-14 70.9
Msa0160380 MtrunA17_Chr3g0104491 36.000 100 57 3 53 145 1 100 1.62e-13 70.5
Msa0160380 MtrunA17_Chr4g0042621 71.739 46 12 1 84 128 9 54 5.09e-13 69.3
Msa0160380 MtrunA17_Chr7g0247141 57.447 47 19 1 1 46 1 47 1.60e-12 62.0
Msa0160380 MtrunA17_Chr5g0434871 55.814 43 19 0 74 116 2 44 6.19e-12 60.8
Msa0160380 MtrunA17_Chr3g0145551 62.500 40 15 0 92 131 2 41 8.13e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160380 AT1G09540.1 47.188 409 132 11 1 368 1 366 1.25e-111 330
Msa0160380 AT1G57560.1 49.731 372 125 14 1 368 1 314 3.24e-98 294
Msa0160380 AT1G57560.2 69.430 193 46 2 1 187 1 186 1.41e-89 271
Msa0160380 AT4G01680.3 81.290 155 28 1 1 154 1 155 3.19e-89 269
Msa0160380 AT4G01680.1 46.556 363 142 8 1 343 1 331 3.84e-89 272
Msa0160380 AT5G26660.1 69.022 184 53 2 1 180 1 184 1.18e-87 268
Msa0160380 AT4G01680.2 45.067 375 142 9 1 343 1 343 8.60e-86 264
Msa0160380 AT3G12720.1 72.222 126 34 1 1 126 12 136 1.88e-68 218
Msa0160380 AT3G13890.2 79.310 116 24 0 1 116 1 116 2.92e-67 216
Msa0160380 AT3G61250.1 69.767 129 39 0 1 129 1 129 7.54e-65 208
Msa0160380 AT3G13890.1 73.600 125 24 1 1 116 1 125 4.80e-64 208
Msa0160380 AT4G12350.1 52.764 199 77 4 1 194 1 187 5.71e-64 206
Msa0160380 AT1G63910.1 68.750 128 40 0 1 128 1 128 1.04e-63 207
Msa0160380 AT1G66230.1 59.877 162 62 1 1 162 1 159 2.68e-63 204
Msa0160380 AT5G15310.1 62.338 154 52 1 1 154 1 148 8.02e-63 204
Msa0160380 AT5G15310.2 62.338 154 52 1 1 154 1 148 8.91e-63 203
Msa0160380 AT5G15310.4 62.338 154 52 1 1 154 1 148 2.04e-62 200
Msa0160380 AT5G16600.1 68.421 133 42 0 1 133 1 133 3.55e-62 202
Msa0160380 AT3G01140.2 68.939 132 41 0 1 132 1 132 1.25e-61 201
Msa0160380 AT4G22680.1 62.069 145 53 1 1 143 1 145 1.28e-61 199
Msa0160380 AT4G34990.1 61.268 142 55 0 1 142 1 142 2.15e-61 199
Msa0160380 AT3G02940.2 64.122 131 47 0 1 131 1 131 2.19e-61 200
Msa0160380 AT3G02940.1 64.122 131 47 0 1 131 1 131 4.80e-61 199
Msa0160380 AT3G02940.3 64.122 131 47 0 1 131 1 131 4.80e-61 199
Msa0160380 AT1G34670.1 64.394 132 47 0 1 132 1 132 5.74e-61 200
Msa0160380 AT5G10280.1 64.394 132 47 0 1 132 1 132 6.34e-61 199
Msa0160380 AT2G16720.1 63.158 133 49 0 1 133 1 133 6.51e-61 197
Msa0160380 AT5G65230.1 66.412 131 44 0 1 131 1 131 8.20e-61 198
Msa0160380 AT1G22640.1 63.359 131 48 0 1 131 1 131 1.05e-60 196
Msa0160380 AT5G16770.4 63.359 131 48 0 1 131 1 131 2.65e-60 197
Msa0160380 AT5G16770.3 63.359 131 48 0 1 131 1 131 2.65e-60 197
Msa0160380 AT4G38620.1 63.359 131 48 0 1 131 1 131 2.74e-60 196
Msa0160380 AT4G05100.1 65.891 129 43 1 1 128 1 129 6.07e-60 196
Msa0160380 AT5G16770.1 63.359 131 48 0 1 131 1 131 6.13e-60 197
Msa0160380 AT5G16770.2 63.359 131 48 0 1 131 1 131 6.13e-60 197
Msa0160380 AT4G21440.1 65.625 128 44 0 1 128 1 128 9.88e-60 197
Msa0160380 AT4G28110.1 65.625 128 44 0 1 128 1 128 1.02e-59 194
Msa0160380 AT4G09460.1 48.404 188 81 1 1 188 1 172 3.03e-59 192
Msa0160380 AT3G01140.1 71.311 122 35 0 6 127 49 170 9.56e-59 195
Msa0160380 AT5G56110.1 64.394 132 47 0 1 132 1 132 1.89e-58 192
Msa0160380 AT5G12870.1 76.147 109 26 0 10 118 16 124 4.36e-58 190
Msa0160380 AT4G17785.2 64.341 129 45 1 1 128 1 129 7.09e-58 192
Msa0160380 AT4G17785.1 64.341 129 45 1 1 128 1 129 8.98e-58 192
Msa0160380 AT5G60890.1 61.240 129 50 0 1 129 1 129 1.26e-57 189
Msa0160380 AT5G14340.1 61.364 132 51 0 1 132 13 144 2.68e-57 188
Msa0160380 AT5G61420.2 61.194 134 52 0 1 134 1 134 3.32e-57 191
Msa0160380 AT5G07690.1 60.432 139 55 0 1 139 1 139 3.80e-57 189
Msa0160380 AT1G74430.1 65.625 128 44 0 1 128 1 128 1.34e-56 186
Msa0160380 AT3G08500.1 71.795 117 30 1 4 117 19 135 3.23e-56 187
Msa0160380 AT1G35515.1 60.305 131 52 0 1 131 1 131 3.33e-56 183
Msa0160380 AT1G06180.1 68.908 119 37 0 1 119 1 119 1.60e-55 182
Msa0160380 AT5G62320.1 50.538 186 59 4 2 155 3 187 3.25e-55 182
Msa0160380 AT1G18570.1 61.832 131 49 1 1 130 1 131 6.56e-55 184
Msa0160380 AT3G28470.1 63.636 132 48 0 1 132 1 132 8.48e-55 183
Msa0160380 AT5G07700.1 60.769 130 51 0 1 130 1 130 1.01e-54 183
Msa0160380 AT5G07700.2 60.769 130 51 0 1 130 1 130 1.01e-54 183
Msa0160380 AT3G23250.1 43.318 217 101 3 1 199 1 213 1.16e-54 181
Msa0160380 AT5G54230.1 64.062 128 46 0 1 128 1 128 1.16e-54 182
Msa0160380 AT2G31180.1 58.042 143 57 1 1 140 1 143 5.93e-54 178
Msa0160380 AT3G13540.1 62.097 124 47 0 6 129 17 140 6.00e-54 178
Msa0160380 AT1G74080.1 61.240 129 50 0 1 129 1 129 1.11e-53 180
Msa0160380 AT1G56160.1 67.826 115 37 0 2 116 4 118 4.12e-53 178
Msa0160380 AT1G18710.1 57.534 146 55 1 1 146 1 139 6.64e-53 176
Msa0160380 AT1G79180.1 66.949 118 39 0 2 119 4 121 1.66e-52 176
Msa0160380 AT1G16490.1 52.532 158 71 1 2 155 4 161 6.58e-51 171
Msa0160380 AT5G26660.2 88.235 85 10 0 45 129 14 98 1.35e-50 172
Msa0160380 AT3G48920.1 67.925 106 34 0 9 114 15 120 4.02e-49 166
Msa0160380 AT5G52260.1 69.369 111 34 0 9 119 9 119 9.16e-49 166
Msa0160380 AT3G12820.1 64.035 114 41 0 3 116 5 118 3.26e-48 163
Msa0160380 AT2G47460.1 57.576 132 56 0 1 132 1 132 1.82e-47 165
Msa0160380 AT5G23000.1 61.538 117 44 1 1 116 1 117 2.15e-47 164
Msa0160380 AT5G62470.2 51.266 158 62 2 1 155 1 146 5.91e-47 163
Msa0160380 AT5G49330.1 62.931 116 43 0 1 116 1 116 8.05e-47 163
Msa0160380 AT4G25560.1 65.179 112 39 0 8 119 6 117 8.50e-47 161
Msa0160380 AT5G57620.1 60.684 117 45 1 1 116 1 117 1.03e-46 162
Msa0160380 AT3G47600.1 59.322 118 48 0 1 118 1 118 1.28e-46 162
Msa0160380 AT3G62610.1 61.207 116 45 0 1 116 1 116 1.37e-46 162
Msa0160380 AT3G49690.1 61.538 117 44 1 1 116 1 117 1.51e-46 161
Msa0160380 AT5G65790.1 60.684 117 45 1 1 116 1 117 2.14e-46 162
Msa0160380 AT1G74650.1 62.069 116 44 0 1 116 1 116 2.58e-46 161
Msa0160380 AT1G08810.1 51.220 164 73 3 1 162 1 159 3.43e-46 159
Msa0160380 AT1G79180.2 52.318 151 39 1 2 119 4 154 1.42e-45 159
Msa0160380 AT5G62470.1 51.266 158 61 3 1 155 1 145 4.05e-45 159
Msa0160380 AT2G36890.1 55.906 127 55 1 1 126 1 127 8.78e-45 156
Msa0160380 AT2G36890.2 55.906 127 55 1 1 126 42 168 1.09e-44 157
Msa0160380 AT5G14750.1 60.577 104 41 0 13 116 17 120 1.60e-44 152
Msa0160380 AT5G06100.1 64.151 106 38 0 12 117 32 137 1.93e-44 159
Msa0160380 AT4G37780.1 58.974 117 47 1 1 116 1 117 2.00e-44 155
Msa0160380 AT3G27810.1 58.559 111 46 0 11 121 19 129 2.10e-44 153
Msa0160380 AT5G35550.1 64.815 108 38 0 9 116 11 118 2.38e-44 154
Msa0160380 AT3G01530.1 60.185 108 43 0 12 119 25 132 3.72e-44 152
Msa0160380 AT3G28910.1 54.264 129 57 1 1 129 1 127 8.37e-44 154
Msa0160380 AT5G06100.5 64.151 106 38 0 12 117 32 137 9.93e-44 159
Msa0160380 AT5G06100.2 64.151 106 38 0 12 117 32 137 9.93e-44 159
Msa0160380 AT5G06100.3 64.151 106 38 0 12 117 32 137 9.93e-44 159
Msa0160380 AT5G06100.4 64.151 106 38 0 12 117 32 137 9.93e-44 159
Msa0160380 AT5G40350.1 50.714 140 59 1 11 140 16 155 1.87e-43 150
Msa0160380 AT5G40330.1 59.615 104 42 0 13 116 13 116 3.06e-43 150
Msa0160380 AT3G11440.2 61.321 106 41 0 12 117 41 146 8.61e-43 155
Msa0160380 AT3G27920.1 57.009 107 46 0 10 116 12 118 1.23e-42 148
Msa0160380 AT5G55020.1 62.617 107 40 0 12 118 26 132 3.50e-42 154
Msa0160380 AT2G26960.1 58.407 113 46 1 9 121 17 128 3.59e-42 152
Msa0160380 AT5G52600.1 52.239 134 55 2 9 133 9 142 3.76e-42 146
Msa0160380 AT3G11440.3 61.321 106 41 0 12 117 41 146 4.05e-42 155
Msa0160380 AT3G11440.4 61.321 106 41 0 12 117 41 146 4.05e-42 155
Msa0160380 AT3G11440.1 61.321 106 41 0 12 117 41 146 4.05e-42 155
Msa0160380 AT1G68320.1 55.285 123 55 0 10 132 17 139 5.37e-42 149
Msa0160380 AT4G13480.1 63.810 105 38 0 13 117 7 111 5.40e-42 148
Msa0160380 AT3G24310.1 62.857 105 39 0 13 117 19 123 7.25e-42 147
Msa0160380 AT1G25340.1 55.833 120 53 0 13 132 19 138 1.71e-41 147
Msa0160380 AT3G30210.1 46.667 165 86 1 13 175 28 192 2.22e-41 147
Msa0160380 AT2G32460.1 59.259 108 44 0 10 117 16 123 4.80e-41 150
Msa0160380 AT2G32460.2 59.259 108 44 0 10 117 4 111 6.26e-41 150
Msa0160380 AT2G47190.1 37.811 201 111 1 12 198 20 220 1.41e-40 144
Msa0160380 AT4G26930.1 59.813 107 43 0 12 118 19 125 3.17e-40 146
Msa0160380 AT1G48000.1 55.652 115 51 0 11 125 31 145 4.34e-40 142
Msa0160380 AT5G59780.3 53.636 110 51 0 9 118 5 114 6.46e-37 134
Msa0160380 AT1G25340.2 53.333 120 51 1 13 132 19 133 1.14e-36 134
Msa0160380 AT3G53200.1 55.140 107 48 0 9 115 6 112 1.65e-36 132
Msa0160380 AT3G06490.1 56.034 116 51 0 12 127 19 134 1.84e-36 135
Msa0160380 AT1G25340.3 53.333 120 51 1 13 132 19 133 2.16e-36 134
Msa0160380 AT3G46130.1 54.717 106 48 0 13 118 10 115 2.30e-36 133
Msa0160380 AT2G26950.1 48.696 115 56 1 6 120 10 121 3.02e-35 133
Msa0160380 AT5G49620.1 54.310 116 53 0 12 127 26 141 6.10e-35 130
Msa0160380 AT1G66370.1 55.769 104 46 0 12 115 8 111 1.03e-34 128
Msa0160380 AT3G60460.1 51.818 110 52 1 9 117 8 117 9.62e-33 124
Msa0160380 AT1G66380.1 58.654 104 43 0 12 115 8 111 1.44e-32 119
Msa0160380 AT1G56650.1 51.667 120 50 1 12 123 8 127 1.76e-31 119
Msa0160380 AT5G49620.2 48.462 130 53 1 12 127 26 155 2.26e-31 121
Msa0160380 AT5G35550.2 72.973 74 20 0 43 116 48 121 4.73e-31 119
Msa0160380 AT1G66390.1 56.604 106 46 0 10 115 6 111 8.98e-31 118
Msa0160380 AT3G27810.2 61.039 77 30 0 45 121 4 80 1.20e-30 115
Msa0160380 AT3G12820.2 72.464 69 19 0 48 116 2 70 1.58e-30 115
Msa0160380 AT5G14750.3 68.116 69 22 0 48 116 18 86 6.05e-30 113
Msa0160380 AT5G40350.2 50.000 106 43 1 45 140 5 110 1.73e-29 112
Msa0160380 AT3G47600.2 53.684 95 40 1 24 118 22 112 1.27e-28 114
Msa0160380 AT3G46130.3 62.667 75 28 0 44 118 9 83 1.74e-28 111
Msa0160380 AT1G22640.3 62.162 74 28 0 58 131 1 74 2.20e-28 110
Msa0160380 AT3G46130.4 63.514 74 27 0 45 118 20 93 4.35e-28 110
Msa0160380 AT5G59780.2 63.514 74 27 0 45 118 20 93 4.87e-28 109
Msa0160380 AT3G53200.2 64.789 71 25 0 45 115 9 79 1.20e-27 108
Msa0160380 AT5G58850.1 37.725 167 85 6 12 163 103 265 4.30e-27 111
Msa0160380 AT1G18960.1 43.802 121 61 4 14 132 10 125 5.72e-27 108
Msa0160380 AT4G37260.1 51.852 108 49 2 14 120 13 118 7.20e-27 108
Msa0160380 AT3G27785.1 45.370 108 56 2 9 115 184 289 8.09e-27 110
Msa0160380 AT5G40360.1 43.519 108 59 2 9 116 153 258 2.40e-26 108
Msa0160380 AT5G11050.1 44.660 103 54 2 14 115 105 205 5.54e-26 108
Msa0160380 AT4G18770.1 44.954 109 57 2 9 116 212 318 6.18e-26 108
Msa0160380 AT5G02320.1 47.664 107 53 2 11 116 124 228 1.71e-25 108
Msa0160380 AT5G02320.2 47.664 107 53 2 11 116 124 228 1.71e-25 108
Msa0160380 AT5G02320.3 47.664 107 53 2 11 116 64 168 1.80e-25 107
Msa0160380 AT2G23290.1 51.456 103 47 2 14 115 13 113 1.88e-25 105
Msa0160380 AT1G71030.2 55.844 77 34 0 51 127 5 81 2.26e-25 101
Msa0160380 AT3G09230.1 50.000 104 49 2 14 116 55 156 2.56e-25 106
Msa0160380 AT1G71030.1 55.844 77 34 0 51 127 19 95 2.64e-25 101
Msa0160380 AT5G67300.1 49.515 103 49 2 14 115 6 106 3.24e-25 104
Msa0160380 AT2G39880.1 52.427 103 46 2 14 115 50 150 3.73e-25 105
Msa0160380 AT3G09370.1 48.571 105 51 2 12 115 128 230 5.22e-25 106
Msa0160380 AT3G09370.2 48.571 105 51 2 12 115 133 235 6.01e-25 106
Msa0160380 AT3G09370.3 48.571 105 51 2 12 115 141 243 9.53e-25 105
Msa0160380 AT5G11510.3 46.729 107 54 2 11 116 78 182 1.04e-24 106
Msa0160380 AT5G11510.1 46.729 107 54 2 11 116 78 182 1.04e-24 106
Msa0160380 AT5G11510.4 46.729 107 54 2 11 116 78 182 1.04e-24 106
Msa0160380 AT3G55730.1 52.427 103 46 2 14 115 56 156 1.12e-24 104
Msa0160380 AT1G73410.1 45.794 107 55 2 14 119 6 110 1.53e-24 100
Msa0160380 AT1G17950.1 45.283 106 55 2 14 118 5 108 1.60e-24 101
Msa0160380 AT5G11510.2 46.729 107 54 2 11 116 78 182 1.61e-24 105
Msa0160380 AT3G50060.1 43.651 126 64 4 14 138 6 125 1.68e-24 102
Msa0160380 AT5G11510.5 46.729 107 54 2 11 116 78 182 1.74e-24 105
Msa0160380 AT3G23250.2 68.333 60 19 0 58 117 1 60 2.98e-24 99.8
Msa0160380 AT1G69560.1 41.441 111 62 2 9 118 102 210 3.15e-24 102
Msa0160380 AT1G69560.2 41.441 111 62 2 9 118 118 226 3.85e-24 102
Msa0160380 AT1G73410.2 45.794 107 55 2 14 119 6 110 6.53e-24 98.2
Msa0160380 AT1G26780.1 42.593 108 59 2 12 118 96 201 1.79e-23 99.0
Msa0160380 AT1G26780.2 42.593 108 59 2 12 118 96 201 2.50e-23 100
Msa0160380 AT4G32730.5 44.860 107 56 2 11 116 84 188 2.95e-23 102
Msa0160380 AT4G32730.4 44.860 107 56 2 11 116 84 188 2.95e-23 102
Msa0160380 AT4G32730.3 44.860 107 56 2 11 116 84 188 2.95e-23 102
Msa0160380 AT4G32730.2 44.860 107 56 2 11 116 84 188 2.95e-23 102
Msa0160380 AT4G32730.1 44.860 107 56 2 11 116 84 188 2.98e-23 102
Msa0160380 AT1G66380.3 58.442 77 32 0 39 115 2 78 2.77e-22 90.9
Msa0160380 AT2G25230.1 41.593 113 63 2 9 120 21 131 4.55e-22 94.0
Msa0160380 AT4G33450.1 38.739 111 65 2 9 118 14 122 1.39e-21 93.2
Msa0160380 AT5G17800.1 40.566 106 62 1 14 119 93 197 1.45e-21 94.4
Msa0160380 AT5G14750.4 62.712 59 22 0 58 116 1 59 4.41e-21 88.6
Msa0160380 AT5G14750.2 62.712 59 22 0 58 116 1 59 4.41e-21 88.6
Msa0160380 AT1G66380.2 54.217 83 38 0 10 92 6 88 7.82e-21 87.0
Msa0160380 AT3G29020.1 38.679 106 62 2 14 118 65 168 1.16e-20 90.1
Msa0160380 AT3G29020.2 38.679 106 62 2 14 118 67 170 1.18e-20 91.7
Msa0160380 AT2G02820.1 37.815 119 72 2 4 121 19 136 5.23e-19 88.6
Msa0160380 AT2G02820.3 37.815 119 72 2 4 121 19 136 5.41e-19 87.4
Msa0160380 AT4G00540.2 42.342 111 58 3 12 118 101 209 6.09e-19 87.8
Msa0160380 AT2G02820.2 37.815 119 72 2 4 121 19 136 9.15e-19 87.8
Msa0160380 AT4G00540.1 42.342 111 58 3 12 118 99 207 1.29e-18 87.4
Msa0160380 AT5G40430.1 38.053 113 66 3 9 120 49 158 3.36e-18 83.6
Msa0160380 AT1G14350.2 40.000 105 62 1 17 121 28 131 3.79e-18 85.9
Msa0160380 AT1G14350.1 40.000 105 62 1 17 121 28 131 3.79e-18 85.9
Msa0160380 AT5G61420.1 66.667 54 18 0 81 134 2 55 1.19e-16 79.7
Msa0160380 AT2G37630.1 35.246 122 77 1 17 136 7 128 1.23e-16 80.9
Msa0160380 AT5G39700.1 34.545 110 71 1 9 118 51 159 1.29e-14 72.0
Msa0160380 AT1G74430.2 70.732 41 12 0 88 128 19 59 1.78e-14 72.0
Msa0160380 AT4G28110.2 73.171 41 11 0 88 128 4 44 4.08e-14 70.9
Msa0160380 AT5G59780.1 60.870 46 18 0 73 118 4 49 1.76e-13 68.6
Msa0160380 AT3G46130.2 60.870 46 18 0 73 118 4 49 1.98e-13 68.9
Msa0160380 AT5G15310.3 53.731 67 25 1 88 154 9 69 2.35e-13 69.7
Msa0160380 AT1G14350.3 43.939 66 37 0 56 121 23 88 2.14e-12 68.2
Msa0160380 AT1G14350.4 43.939 66 37 0 56 121 23 88 2.14e-12 68.2
Msa0160380 AT1G22640.2 61.364 44 17 0 88 131 16 59 2.19e-12 65.5
Msa0160380 AT5G14340.2 55.556 45 20 0 88 132 10 54 2.58e-12 65.5
Msa0160380 AT4G25560.2 61.224 49 19 0 71 119 3 51 3.18e-12 65.9
Msa0160380 AT3G18100.1 35.417 96 61 1 13 108 545 639 6.33e-11 64.3
Msa0160380 AT3G18100.3 35.417 96 61 1 13 108 497 591 7.75e-11 64.3
Msa0160380 AT3G18100.4 35.417 96 61 1 13 108 384 478 8.38e-11 63.9
Msa0160380 AT3G28910.2 50.943 53 24 1 77 129 1 51 8.64e-11 62.0

Find 94 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGTTATGAAACCTGTTTC+TGG 0.187715 1_4:+32596808 None:intergenic
AAATAAAATGGCAGCTTGAT+AGG 0.252151 1_4:+32598211 None:intergenic
TCTTTCCAGAACTTGAACTA+TGG 0.254408 1_4:-32597168 Msa0160380:CDS
ATCTCATTGTCTGTTCTTCC+TGG 0.281887 1_4:+32597492 None:intergenic
GAATAAGGTTGTTTCCAATT+AGG 0.285060 1_4:-32596422 Msa0160380:three_prime_UTR
CCTCGGACGGAGTTCATAAC+TGG 0.293507 1_4:-32596972 Msa0160380:CDS
AGTTTCCACGTAGGTTTCTT+TGG 0.308461 1_4:-32598118 Msa0160380:five_prime_UTR
TGATAGGGAATTGAATAAAT+AGG 0.311045 1_4:+32598227 None:intergenic
ATGTTTGTACCTGCTAGTTT+GGG 0.316790 1_4:+32597888 None:intergenic
TATGTTTGTACCTGCTAGTT+TGG 0.322284 1_4:+32597887 None:intergenic
TTGATCCATAGTTCAAGTTC+TGG 0.343300 1_4:+32597163 None:intergenic
AAAGGTGTGGGAAGAGTTGC+AGG 0.345434 1_4:-32597769 Msa0160380:CDS
GAGAGTGGTTTGTGAGTGTT+TGG 0.356009 1_4:+32597414 None:intergenic
AGAGGCAATACTTCTGAATA+AGG 0.373235 1_4:-32596437 Msa0160380:three_prime_UTR
TCAACTCACAAACTTTGCTT+TGG 0.382343 1_4:+32598056 None:intergenic
GCTACTGTTGTTGATCTTTG+AGG 0.386482 1_4:+32597248 None:intergenic
ATAAATAGGAAGAGACTTAG+AGG 0.388589 1_4:+32598241 None:intergenic
CCAACATCCATGACCATGTT+TGG 0.389930 1_4:+32597920 None:intergenic
TATCAGACACATATACAATA+TGG 0.396343 1_4:+32596557 None:intergenic
ACATGTTAAGCCAACTGTTT+CGG 0.398547 1_4:-32596998 Msa0160380:CDS
TGCTACCAAACCTGGTATCT+AGG 0.408405 1_4:+32597205 None:intergenic
GTGAAACAAATAGATGCATT+TGG 0.408858 1_4:+32597120 None:intergenic
TTCATGCAGTACTTGGTAAC+AGG 0.409516 1_4:-32597667 Msa0160380:intron
AATATGGAAGATTTATCAAA+AGG 0.411545 1_4:+32596573 None:intergenic
TTTGGACAAACTATGTAGTC+TGG 0.421576 1_4:-32596691 Msa0160380:exon
AGAAGTTTCTCATCTTCCTC+TGG 0.426768 1_4:+32597954 None:intergenic
ATTTCCTATATGAACTATAT+AGG 0.429035 1_4:-32596643 Msa0160380:three_prime_UTR
ATTGAACTTCATGCAGTACT+TGG 0.433082 1_4:-32597674 Msa0160380:CDS
TTATTCCTAGATACCAGGTT+TGG 0.454673 1_4:-32597210 Msa0160380:CDS
AAGAAACCTACGTGGAAACT+AGG 0.458669 1_4:+32598121 None:intergenic
GCCAACTGTTTCGGTTTCCT+CGG 0.459910 1_4:-32596989 Msa0160380:CDS
GGAAACTAGGGAGGAACGTT+TGG 0.460522 1_4:+32598134 None:intergenic
TTAGCCTCAGTGTACATTGA+TGG 0.461448 1_4:+32596832 None:intergenic
TGATACAGAATGGAGCATAT+TGG 0.462241 1_4:+32597044 None:intergenic
TTGAGGCCTGATTTGAAAAG+AGG 0.464473 1_4:-32597728 Msa0160380:CDS
ATATGGAAGATTTATCAAAA+GGG 0.464641 1_4:+32596574 None:intergenic
TAGCCTCAGTGTACATTGAT+GGG 0.467430 1_4:+32596833 None:intergenic
AGAAGTTAAGGAAAGGACTT+TGG 0.475806 1_4:-32597980 Msa0160380:CDS
GGAAGAGTTGCAGGTTAAGA+TGG 0.476199 1_4:-32597760 Msa0160380:CDS
CTGACCTATATAGTTCATAT+AGG 0.476313 1_4:+32596639 None:intergenic
GAGGAACGTTTGGTGGGGTG+AGG 0.479775 1_4:+32598144 None:intergenic
CGTTACAAGAAGAAATGAAA+TGG 0.480075 1_4:-32596900 Msa0160380:CDS
GGTTGATTCTGCATAAGAAA+TGG 0.480248 1_4:+32596859 None:intergenic
ACTTGAACTGCTACCAAACC+TGG 0.483346 1_4:+32597197 None:intergenic
ACTGAGGCTAAACCAGAAAC+AGG 0.484680 1_4:-32596820 Msa0160380:CDS
TTTCTTATGTTTCTGACCAC+AGG 0.485680 1_4:-32596613 Msa0160380:three_prime_UTR
TGGTATCTAGGAATAATTCA+TGG 0.486504 1_4:+32597217 None:intergenic
AATAAAATGGCAGCTTGATA+GGG 0.488986 1_4:+32598212 None:intergenic
TTGAACTATGGATCAAACAT+AGG 0.491185 1_4:-32597156 Msa0160380:CDS
GCTGCTACAAGCAGAAGTTA+AGG 0.502078 1_4:-32597992 Msa0160380:CDS
CTGAATTACATTACCAAACA+TGG 0.502718 1_4:-32597933 Msa0160380:CDS
CAGATGAATCATGTACTAGT+TGG 0.505678 1_4:-32596789 Msa0160380:CDS
CCAAACATGGTCATGGATGT+TGG 0.521644 1_4:-32597920 Msa0160380:CDS
CATTTCATTTCTTCTTGTAA+CGG 0.527153 1_4:+32596901 None:intergenic
TTTACAGGTTTGCAAAGGTG+TGG 0.532239 1_4:-32597782 Msa0160380:intron
GTTGAAGTTGAGAAAATTGA+GGG 0.536490 1_4:+32597021 None:intergenic
ACTGTTTCGGTTTCCTCGGA+CGG 0.541892 1_4:-32596985 Msa0160380:CDS
CAGATTGCAGCACAATTACC+AGG 0.546616 1_4:-32597510 Msa0160380:CDS
ATGAATTATTCCTAGATACC+AGG 0.549894 1_4:-32597215 Msa0160380:CDS
TACATTACCAAACATGGTCA+TGG 0.551080 1_4:-32597927 Msa0160380:CDS
AAGAAAAGATTGAGACAAAG+TGG 0.551516 1_4:-32597444 Msa0160380:CDS
AGAAACCTACGTGGAAACTA+GGG 0.552431 1_4:+32598122 None:intergenic
AGTTCTGTCCCCAAACTAGC+AGG 0.555346 1_4:-32597897 Msa0160380:intron
AACTAGGGAGGAACGTTTGG+TGG 0.562946 1_4:+32598137 None:intergenic
AAATTGAGGGTGATACAGAA+TGG 0.566456 1_4:+32597034 None:intergenic
TGTTGAAGTTGAGAAAATTG+AGG 0.567398 1_4:+32597020 None:intergenic
TTACAGGTTTGCAAAGGTGT+GGG 0.568173 1_4:-32597781 Msa0160380:intron
AACATTAACAACACAAACAA+CGG 0.580018 1_4:-32596931 Msa0160380:CDS
TGAACTATGGATCAAACATA+GGG 0.580769 1_4:-32597155 Msa0160380:CDS
ATTTGTGACGAAGTTGAAGT+TGG 0.583392 1_4:+32597096 None:intergenic
ACTTTCTGATATATATAGCA+AGG 0.584658 1_4:-32596737 Msa0160380:CDS
GGAAGAGACACAGATGGTGA+TGG 0.585477 1_4:-32596670 Msa0160380:three_prime_UTR
TGTTTGTGTTGTTAATGTTG+TGG 0.590374 1_4:+32596935 None:intergenic
ACTAGGGAGGAACGTTTGGT+GGG 0.600836 1_4:+32598138 None:intergenic
AAGTATTGCCTCTATGCTTG+AGG 0.602162 1_4:+32596447 None:intergenic
TCCGAGGAAACCGAAACAGT+TGG 0.603461 1_4:+32596988 None:intergenic
CTCGGACGGAGTTCATAACT+GGG 0.605268 1_4:-32596971 Msa0160380:CDS
TAAGATGGATAAATTACTTG+AGG 0.605702 1_4:-32597745 Msa0160380:CDS
AGCCTCAGTGTACATTGATG+GGG 0.607267 1_4:+32596834 None:intergenic
GAGGTAGTAGAAACTTCTAG+AGG 0.610829 1_4:+32597267 None:intergenic
CACTCACAAACCACTCTCTG+AGG 0.631167 1_4:-32597409 Msa0160380:CDS
AGGTAGTAGAAACTTCTAGA+GGG 0.636573 1_4:+32597268 None:intergenic
CTAGGGAGGAACGTTTGGTG+GGG 0.638225 1_4:+32598139 None:intergenic
TACAAGCAGAAGTTAAGGAA+AGG 0.639660 1_4:-32597987 Msa0160380:CDS
CCAGTTATGAACTCCGTCCG+AGG 0.643154 1_4:+32596972 None:intergenic
TGTTTGTACCTGCTAGTTTG+GGG 0.646582 1_4:+32597889 None:intergenic
GAAAGGACTTTGGTCTCCAG+AGG 0.652425 1_4:-32597970 Msa0160380:CDS
TCAGTGTACATTGATGGGGA+AGG 0.652779 1_4:+32596838 None:intergenic
TAGTCTGGAAGAGACACAGA+TGG 0.686071 1_4:-32596676 Msa0160380:three_prime_UTR
AACCTACGTGGAAACTAGGG+AGG 0.693747 1_4:+32598125 None:intergenic
AAATTTACAGCACACACCTG+TGG 0.698981 1_4:+32596597 None:intergenic
TTCCTCCCTAGTTTCCACGT+AGG 0.713118 1_4:-32598127 Msa0160380:five_prime_UTR
TCTGTCCAAAGAAACCTACG+TGG 0.753225 1_4:+32598113 None:intergenic
TTCCCCATCAATGTACACTG+AGG 0.775584 1_4:-32596836 Msa0160380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAAATTTAATCTTTTAC+AGG - chr1_4:32596798-32596817 Msa0160380:CDS 10.0%
!!! ATTTTTTTATACTATAGTTT+TGG - chr1_4:32597013-32597032 Msa0160380:CDS 10.0%
!!! TGAAAAGTAATATTTTTTTT+TGG + chr1_4:32598064-32598083 None:intergenic 10.0%
!!! ATATAAATTTAATCTTTTAC+AGG - chr1_4:32596798-32596817 Msa0160380:CDS 10.0%
!!! ATTTTTTTATACTATAGTTT+TGG - chr1_4:32597013-32597032 Msa0160380:CDS 10.0%
!!! TGAAAAGTAATATTTTTTTT+TGG + chr1_4:32598064-32598083 None:intergenic 10.0%
!!! GCAAGTTGAAAAAAATAAAA+TGG + chr1_4:32596399-32596418 None:intergenic 20.0%
!!! CTTTTAATTAACATACACAT+GGG - chr1_4:32596569-32596588 Msa0160380:three_prime_UTR 20.0%
!! ACAATGAGATTAAAAATCTA+TGG - chr1_4:32597116-32597135 Msa0160380:CDS 20.0%
!! ATTTCCTATATGAACTATAT+AGG - chr1_4:32597952-32597971 Msa0160380:CDS 20.0%
!! ATATGGAAGATTTATCAAAA+GGG + chr1_4:32598024-32598043 None:intergenic 20.0%
!! AATATGGAAGATTTATCAAA+AGG + chr1_4:32598025-32598044 None:intergenic 20.0%
!!! ATATATTTTTCAAGCCTAAT+TGG + chr1_4:32598190-32598209 None:intergenic 20.0%
!!! GCAAGTTGAAAAAAATAAAA+TGG + chr1_4:32596399-32596418 None:intergenic 20.0%
!!! CTTTTAATTAACATACACAT+GGG - chr1_4:32596569-32596588 Msa0160380:three_prime_UTR 20.0%
!! ACAATGAGATTAAAAATCTA+TGG - chr1_4:32597116-32597135 Msa0160380:CDS 20.0%
!! ATTTCCTATATGAACTATAT+AGG - chr1_4:32597952-32597971 Msa0160380:CDS 20.0%
!! ATATGGAAGATTTATCAAAA+GGG + chr1_4:32598024-32598043 None:intergenic 20.0%
!! AATATGGAAGATTTATCAAA+AGG + chr1_4:32598025-32598044 None:intergenic 20.0%
!!! ATATATTTTTCAAGCCTAAT+TGG + chr1_4:32598190-32598209 None:intergenic 20.0%
! TGATAGGGAATTGAATAAAT+AGG + chr1_4:32596371-32596390 None:intergenic 25.0%
!!! GCTTTTAATTAACATACACA+TGG - chr1_4:32596568-32596587 Msa0160380:three_prime_UTR 25.0%
! TAAGATGGATAAATTACTTG+AGG - chr1_4:32596850-32596869 Msa0160380:CDS 25.0%
!!! GTTTTGGTTTAATTATGTGA+TGG - chr1_4:32597029-32597048 Msa0160380:CDS 25.0%
! AACATTAACAACACAAACAA+CGG - chr1_4:32597664-32597683 Msa0160380:intron 25.0%
! CATTTCATTTCTTCTTGTAA+CGG + chr1_4:32597697-32597716 None:intergenic 25.0%
! ACTTTCTGATATATATAGCA+AGG - chr1_4:32597858-32597877 Msa0160380:intron 25.0%
! TATCAGACACATATACAATA+TGG + chr1_4:32598041-32598060 None:intergenic 25.0%
! TGATAGGGAATTGAATAAAT+AGG + chr1_4:32596371-32596390 None:intergenic 25.0%
!!! GCTTTTAATTAACATACACA+TGG - chr1_4:32596568-32596587 Msa0160380:three_prime_UTR 25.0%
! TAAGATGGATAAATTACTTG+AGG - chr1_4:32596850-32596869 Msa0160380:CDS 25.0%
!!! GTTTTGGTTTAATTATGTGA+TGG - chr1_4:32597029-32597048 Msa0160380:CDS 25.0%
! AACATTAACAACACAAACAA+CGG - chr1_4:32597664-32597683 Msa0160380:intron 25.0%
! CATTTCATTTCTTCTTGTAA+CGG + chr1_4:32597697-32597716 None:intergenic 25.0%
! ACTTTCTGATATATATAGCA+AGG - chr1_4:32597858-32597877 Msa0160380:intron 25.0%
! TATCAGACACATATACAATA+TGG + chr1_4:32598041-32598060 None:intergenic 25.0%
AATAAAATGGCAGCTTGATA+GGG + chr1_4:32596386-32596405 None:intergenic 30.0%
AAATAAAATGGCAGCTTGAT+AGG + chr1_4:32596387-32596406 None:intergenic 30.0%
!! TTTTTCAACTTGCTTGTCTA+AGG - chr1_4:32596406-32596425 Msa0160380:three_prime_UTR 30.0%
!! TTTTCAACTTGCTTGTCTAA+GGG - chr1_4:32596407-32596426 Msa0160380:three_prime_UTR 30.0%
CTGAATTACATTACCAAACA+TGG - chr1_4:32596662-32596681 Msa0160380:three_prime_UTR 30.0%
! AATCTTTTACAGGTTTGCAA+AGG - chr1_4:32596808-32596827 Msa0160380:CDS 30.0%
!! TGTTGTTGCTTTATATCAGA+TGG - chr1_4:32597059-32597078 Msa0160380:CDS 30.0%
AAGAAAAGATTGAGACAAAG+TGG - chr1_4:32597151-32597170 Msa0160380:CDS 30.0%
!!! AGCTTTTTGATTGGTTTTGT+TGG + chr1_4:32597242-32597261 None:intergenic 30.0%
! TGAAACTGAAGCTTTTTGAT+TGG + chr1_4:32597251-32597270 None:intergenic 30.0%
! CCTTCTATAGAAGTTTTTGT+AGG + chr1_4:32597304-32597323 None:intergenic 30.0%
CCTACAAAAACTTCTATAGA+AGG - chr1_4:32597301-32597320 Msa0160380:CDS 30.0%
TGGTATCTAGGAATAATTCA+TGG + chr1_4:32597381-32597400 None:intergenic 30.0%
ATGAATTATTCCTAGATACC+AGG - chr1_4:32597380-32597399 Msa0160380:CDS 30.0%
TTGAACTATGGATCAAACAT+AGG - chr1_4:32597439-32597458 Msa0160380:CDS 30.0%
TGAACTATGGATCAAACATA+GGG - chr1_4:32597440-32597459 Msa0160380:CDS 30.0%
GTGAAACAAATAGATGCATT+TGG + chr1_4:32597478-32597497 None:intergenic 30.0%
GTTGAAGTTGAGAAAATTGA+GGG + chr1_4:32597577-32597596 None:intergenic 30.0%
TGTTGAAGTTGAGAAAATTG+AGG + chr1_4:32597578-32597597 None:intergenic 30.0%
! TGTTTGTGTTGTTAATGTTG+TGG + chr1_4:32597663-32597682 None:intergenic 30.0%
CGTTACAAGAAGAAATGAAA+TGG - chr1_4:32597695-32597714 Msa0160380:CDS 30.0%
CTGACCTATATAGTTCATAT+AGG + chr1_4:32597959-32597978 None:intergenic 30.0%
GCTTGAGGTAAAAAATGATT+TGG + chr1_4:32598136-32598155 None:intergenic 30.0%
!!! ATTTTTTACCTCAAGCATAG+AGG - chr1_4:32598140-32598159 Msa0160380:five_prime_UTR 30.0%
! GAATAAGGTTGTTTCCAATT+AGG - chr1_4:32598173-32598192 Msa0160380:five_prime_UTR 30.0%
AATAAAATGGCAGCTTGATA+GGG + chr1_4:32596386-32596405 None:intergenic 30.0%
AAATAAAATGGCAGCTTGAT+AGG + chr1_4:32596387-32596406 None:intergenic 30.0%
!! TTTTTCAACTTGCTTGTCTA+AGG - chr1_4:32596406-32596425 Msa0160380:three_prime_UTR 30.0%
!! TTTTCAACTTGCTTGTCTAA+GGG - chr1_4:32596407-32596426 Msa0160380:three_prime_UTR 30.0%
CTGAATTACATTACCAAACA+TGG - chr1_4:32596662-32596681 Msa0160380:three_prime_UTR 30.0%
! AATCTTTTACAGGTTTGCAA+AGG - chr1_4:32596808-32596827 Msa0160380:CDS 30.0%
!! TGTTGTTGCTTTATATCAGA+TGG - chr1_4:32597059-32597078 Msa0160380:CDS 30.0%
AAGAAAAGATTGAGACAAAG+TGG - chr1_4:32597151-32597170 Msa0160380:CDS 30.0%
!!! AGCTTTTTGATTGGTTTTGT+TGG + chr1_4:32597242-32597261 None:intergenic 30.0%
! TGAAACTGAAGCTTTTTGAT+TGG + chr1_4:32597251-32597270 None:intergenic 30.0%
! CCTTCTATAGAAGTTTTTGT+AGG + chr1_4:32597304-32597323 None:intergenic 30.0%
CCTACAAAAACTTCTATAGA+AGG - chr1_4:32597301-32597320 Msa0160380:CDS 30.0%
TGGTATCTAGGAATAATTCA+TGG + chr1_4:32597381-32597400 None:intergenic 30.0%
ATGAATTATTCCTAGATACC+AGG - chr1_4:32597380-32597399 Msa0160380:CDS 30.0%
TTGAACTATGGATCAAACAT+AGG - chr1_4:32597439-32597458 Msa0160380:CDS 30.0%
TGAACTATGGATCAAACATA+GGG - chr1_4:32597440-32597459 Msa0160380:CDS 30.0%
GTGAAACAAATAGATGCATT+TGG + chr1_4:32597478-32597497 None:intergenic 30.0%
GTTGAAGTTGAGAAAATTGA+GGG + chr1_4:32597577-32597596 None:intergenic 30.0%
TGTTGAAGTTGAGAAAATTG+AGG + chr1_4:32597578-32597597 None:intergenic 30.0%
! TGTTTGTGTTGTTAATGTTG+TGG + chr1_4:32597663-32597682 None:intergenic 30.0%
CGTTACAAGAAGAAATGAAA+TGG - chr1_4:32597695-32597714 Msa0160380:CDS 30.0%
CTGACCTATATAGTTCATAT+AGG + chr1_4:32597959-32597978 None:intergenic 30.0%
GCTTGAGGTAAAAAATGATT+TGG + chr1_4:32598136-32598155 None:intergenic 30.0%
!!! ATTTTTTACCTCAAGCATAG+AGG - chr1_4:32598140-32598159 Msa0160380:five_prime_UTR 30.0%
! GAATAAGGTTGTTTCCAATT+AGG - chr1_4:32598173-32598192 Msa0160380:five_prime_UTR 30.0%
TCAACTCACAAACTTTGCTT+TGG + chr1_4:32596542-32596561 None:intergenic 35.0%
TACAAGCAGAAGTTAAGGAA+AGG - chr1_4:32596608-32596627 Msa0160380:three_prime_UTR 35.0%
AGAAGTTAAGGAAAGGACTT+TGG - chr1_4:32596615-32596634 Msa0160380:three_prime_UTR 35.0%
TACATTACCAAACATGGTCA+TGG - chr1_4:32596668-32596687 Msa0160380:three_prime_UTR 35.0%
! ATGTTTGTACCTGCTAGTTT+GGG + chr1_4:32596710-32596729 None:intergenic 35.0%
TATGTTTGTACCTGCTAGTT+TGG + chr1_4:32596711-32596730 None:intergenic 35.0%
! AATGCTCCTCTTTTCAAATC+AGG + chr1_4:32596876-32596895 None:intergenic 35.0%
ATTGAACTTCATGCAGTACT+TGG - chr1_4:32596921-32596940 Msa0160380:CDS 35.0%
AGGTAGTAGAAACTTCTAGA+GGG + chr1_4:32597330-32597349 None:intergenic 35.0%
TTATTCCTAGATACCAGGTT+TGG - chr1_4:32597385-32597404 Msa0160380:CDS 35.0%
TCTTTCCAGAACTTGAACTA+TGG - chr1_4:32597427-32597446 Msa0160380:CDS 35.0%
! TTGATCCATAGTTCAAGTTC+TGG + chr1_4:32597435-32597454 None:intergenic 35.0%
ATTTGTGACGAAGTTGAAGT+TGG + chr1_4:32597502-32597521 None:intergenic 35.0%
TGATACAGAATGGAGCATAT+TGG + chr1_4:32597554-32597573 None:intergenic 35.0%
AAATTGAGGGTGATACAGAA+TGG + chr1_4:32597564-32597583 None:intergenic 35.0%
ACATGTTAAGCCAACTGTTT+CGG - chr1_4:32597597-32597616 Msa0160380:intron 35.0%
! GGTTGATTCTGCATAAGAAA+TGG + chr1_4:32597739-32597758 None:intergenic 35.0%
TCTGTTATGAAACCTGTTTC+TGG + chr1_4:32597790-32597809 None:intergenic 35.0%
CAGATGAATCATGTACTAGT+TGG - chr1_4:32597806-32597825 Msa0160380:intron 35.0%
TTTGGACAAACTATGTAGTC+TGG - chr1_4:32597904-32597923 Msa0160380:CDS 35.0%
! TTTCTTATGTTTCTGACCAC+AGG - chr1_4:32597982-32598001 Msa0160380:CDS 35.0%
AGAGGCAATACTTCTGAATA+AGG - chr1_4:32598158-32598177 Msa0160380:five_prime_UTR 35.0%
TCAACTCACAAACTTTGCTT+TGG + chr1_4:32596542-32596561 None:intergenic 35.0%
TACAAGCAGAAGTTAAGGAA+AGG - chr1_4:32596608-32596627 Msa0160380:three_prime_UTR 35.0%
AGAAGTTAAGGAAAGGACTT+TGG - chr1_4:32596615-32596634 Msa0160380:three_prime_UTR 35.0%
TACATTACCAAACATGGTCA+TGG - chr1_4:32596668-32596687 Msa0160380:three_prime_UTR 35.0%
! ATGTTTGTACCTGCTAGTTT+GGG + chr1_4:32596710-32596729 None:intergenic 35.0%
TATGTTTGTACCTGCTAGTT+TGG + chr1_4:32596711-32596730 None:intergenic 35.0%
! AATGCTCCTCTTTTCAAATC+AGG + chr1_4:32596876-32596895 None:intergenic 35.0%
ATTGAACTTCATGCAGTACT+TGG - chr1_4:32596921-32596940 Msa0160380:CDS 35.0%
AGGTAGTAGAAACTTCTAGA+GGG + chr1_4:32597330-32597349 None:intergenic 35.0%
TTATTCCTAGATACCAGGTT+TGG - chr1_4:32597385-32597404 Msa0160380:CDS 35.0%
TCTTTCCAGAACTTGAACTA+TGG - chr1_4:32597427-32597446 Msa0160380:CDS 35.0%
! TTGATCCATAGTTCAAGTTC+TGG + chr1_4:32597435-32597454 None:intergenic 35.0%
ATTTGTGACGAAGTTGAAGT+TGG + chr1_4:32597502-32597521 None:intergenic 35.0%
TGATACAGAATGGAGCATAT+TGG + chr1_4:32597554-32597573 None:intergenic 35.0%
AAATTGAGGGTGATACAGAA+TGG + chr1_4:32597564-32597583 None:intergenic 35.0%
ACATGTTAAGCCAACTGTTT+CGG - chr1_4:32597597-32597616 Msa0160380:intron 35.0%
! GGTTGATTCTGCATAAGAAA+TGG + chr1_4:32597739-32597758 None:intergenic 35.0%
TCTGTTATGAAACCTGTTTC+TGG + chr1_4:32597790-32597809 None:intergenic 35.0%
CAGATGAATCATGTACTAGT+TGG - chr1_4:32597806-32597825 Msa0160380:intron 35.0%
TTTGGACAAACTATGTAGTC+TGG - chr1_4:32597904-32597923 Msa0160380:CDS 35.0%
! TTTCTTATGTTTCTGACCAC+AGG - chr1_4:32597982-32598001 Msa0160380:CDS 35.0%
AGAGGCAATACTTCTGAATA+AGG - chr1_4:32598158-32598177 Msa0160380:five_prime_UTR 35.0%
AGAAACCTACGTGGAAACTA+GGG + chr1_4:32596476-32596495 None:intergenic 40.0%
AAGAAACCTACGTGGAAACT+AGG + chr1_4:32596477-32596496 None:intergenic 40.0%
AGTTTCCACGTAGGTTTCTT+TGG - chr1_4:32596477-32596496 Msa0160380:three_prime_UTR 40.0%
AGAAGTTTCTCATCTTCCTC+TGG + chr1_4:32596644-32596663 None:intergenic 40.0%
! TGTTTGTACCTGCTAGTTTG+GGG + chr1_4:32596709-32596728 None:intergenic 40.0%
TTTACAGGTTTGCAAAGGTG+TGG - chr1_4:32596813-32596832 Msa0160380:CDS 40.0%
! TTACAGGTTTGCAAAGGTGT+GGG - chr1_4:32596814-32596833 Msa0160380:CDS 40.0%
! TTGAGGCCTGATTTGAAAAG+AGG - chr1_4:32596867-32596886 Msa0160380:CDS 40.0%
! TTCATGCAGTACTTGGTAAC+AGG - chr1_4:32596928-32596947 Msa0160380:CDS 40.0%
ATCTCATTGTCTGTTCTTCC+TGG + chr1_4:32597106-32597125 None:intergenic 40.0%
! TCATTTTCAACCTCAGAGAG+TGG + chr1_4:32597199-32597218 None:intergenic 40.0%
GAGGTAGTAGAAACTTCTAG+AGG + chr1_4:32597331-32597350 None:intergenic 40.0%
GCTACTGTTGTTGATCTTTG+AGG + chr1_4:32597350-32597369 None:intergenic 40.0%
TAGCCTCAGTGTACATTGAT+GGG + chr1_4:32597765-32597784 None:intergenic 40.0%
TTAGCCTCAGTGTACATTGA+TGG + chr1_4:32597766-32597785 None:intergenic 40.0%
! CAGAGATTTTCAGTGGCTTT+TGG - chr1_4:32597886-32597905 Msa0160380:intron 40.0%
AAATTTACAGCACACACCTG+TGG + chr1_4:32598001-32598020 None:intergenic 40.0%
! AAGTATTGCCTCTATGCTTG+AGG + chr1_4:32598151-32598170 None:intergenic 40.0%
AGAAACCTACGTGGAAACTA+GGG + chr1_4:32596476-32596495 None:intergenic 40.0%
AAGAAACCTACGTGGAAACT+AGG + chr1_4:32596477-32596496 None:intergenic 40.0%
AGTTTCCACGTAGGTTTCTT+TGG - chr1_4:32596477-32596496 Msa0160380:three_prime_UTR 40.0%
AGAAGTTTCTCATCTTCCTC+TGG + chr1_4:32596644-32596663 None:intergenic 40.0%
! TGTTTGTACCTGCTAGTTTG+GGG + chr1_4:32596709-32596728 None:intergenic 40.0%
TTTACAGGTTTGCAAAGGTG+TGG - chr1_4:32596813-32596832 Msa0160380:CDS 40.0%
! TTACAGGTTTGCAAAGGTGT+GGG - chr1_4:32596814-32596833 Msa0160380:CDS 40.0%
! TTGAGGCCTGATTTGAAAAG+AGG - chr1_4:32596867-32596886 Msa0160380:CDS 40.0%
! TTCATGCAGTACTTGGTAAC+AGG - chr1_4:32596928-32596947 Msa0160380:CDS 40.0%
ATCTCATTGTCTGTTCTTCC+TGG + chr1_4:32597106-32597125 None:intergenic 40.0%
! TCATTTTCAACCTCAGAGAG+TGG + chr1_4:32597199-32597218 None:intergenic 40.0%
GAGGTAGTAGAAACTTCTAG+AGG + chr1_4:32597331-32597350 None:intergenic 40.0%
GCTACTGTTGTTGATCTTTG+AGG + chr1_4:32597350-32597369 None:intergenic 40.0%
TAGCCTCAGTGTACATTGAT+GGG + chr1_4:32597765-32597784 None:intergenic 40.0%
TTAGCCTCAGTGTACATTGA+TGG + chr1_4:32597766-32597785 None:intergenic 40.0%
! CAGAGATTTTCAGTGGCTTT+TGG - chr1_4:32597886-32597905 Msa0160380:intron 40.0%
AAATTTACAGCACACACCTG+TGG + chr1_4:32598001-32598020 None:intergenic 40.0%
! AAGTATTGCCTCTATGCTTG+AGG + chr1_4:32598151-32598170 None:intergenic 40.0%
TCTGTCCAAAGAAACCTACG+TGG + chr1_4:32596485-32596504 None:intergenic 45.0%
GCTGCTACAAGCAGAAGTTA+AGG - chr1_4:32596603-32596622 Msa0160380:three_prime_UTR 45.0%
CCAACATCCATGACCATGTT+TGG + chr1_4:32596678-32596697 None:intergenic 45.0%
CCAAACATGGTCATGGATGT+TGG - chr1_4:32596675-32596694 Msa0160380:three_prime_UTR 45.0%
GGAAGAGTTGCAGGTTAAGA+TGG - chr1_4:32596835-32596854 Msa0160380:CDS 45.0%
CAGATTGCAGCACAATTACC+AGG - chr1_4:32597085-32597104 Msa0160380:CDS 45.0%
! GAGAGTGGTTTGTGAGTGTT+TGG + chr1_4:32597184-32597203 None:intergenic 45.0%
TGCTACCAAACCTGGTATCT+AGG + chr1_4:32597393-32597412 None:intergenic 45.0%
ACTTGAACTGCTACCAAACC+TGG + chr1_4:32597401-32597420 None:intergenic 45.0%
TCAGTGTACATTGATGGGGA+AGG + chr1_4:32597760-32597779 None:intergenic 45.0%
TTCCCCATCAATGTACACTG+AGG - chr1_4:32597759-32597778 Msa0160380:CDS 45.0%
AGCCTCAGTGTACATTGATG+GGG + chr1_4:32597764-32597783 None:intergenic 45.0%
ACTGAGGCTAAACCAGAAAC+AGG - chr1_4:32597775-32597794 Msa0160380:CDS 45.0%
! GGATCTGCAGAGATTTTCAG+TGG - chr1_4:32597879-32597898 Msa0160380:intron 45.0%
TAGTCTGGAAGAGACACAGA+TGG - chr1_4:32597919-32597938 Msa0160380:CDS 45.0%
TCTGTCCAAAGAAACCTACG+TGG + chr1_4:32596485-32596504 None:intergenic 45.0%
GCTGCTACAAGCAGAAGTTA+AGG - chr1_4:32596603-32596622 Msa0160380:three_prime_UTR 45.0%
CCAACATCCATGACCATGTT+TGG + chr1_4:32596678-32596697 None:intergenic 45.0%
CCAAACATGGTCATGGATGT+TGG - chr1_4:32596675-32596694 Msa0160380:three_prime_UTR 45.0%
GGAAGAGTTGCAGGTTAAGA+TGG - chr1_4:32596835-32596854 Msa0160380:CDS 45.0%
CAGATTGCAGCACAATTACC+AGG - chr1_4:32597085-32597104 Msa0160380:CDS 45.0%
! GAGAGTGGTTTGTGAGTGTT+TGG + chr1_4:32597184-32597203 None:intergenic 45.0%
TGCTACCAAACCTGGTATCT+AGG + chr1_4:32597393-32597412 None:intergenic 45.0%
ACTTGAACTGCTACCAAACC+TGG + chr1_4:32597401-32597420 None:intergenic 45.0%
TCAGTGTACATTGATGGGGA+AGG + chr1_4:32597760-32597779 None:intergenic 45.0%
TTCCCCATCAATGTACACTG+AGG - chr1_4:32597759-32597778 Msa0160380:CDS 45.0%
AGCCTCAGTGTACATTGATG+GGG + chr1_4:32597764-32597783 None:intergenic 45.0%
ACTGAGGCTAAACCAGAAAC+AGG - chr1_4:32597775-32597794 Msa0160380:CDS 45.0%
! GGATCTGCAGAGATTTTCAG+TGG - chr1_4:32597879-32597898 Msa0160380:intron 45.0%
TAGTCTGGAAGAGACACAGA+TGG - chr1_4:32597919-32597938 Msa0160380:CDS 45.0%
ACTAGGGAGGAACGTTTGGT+GGG + chr1_4:32596460-32596479 None:intergenic 50.0%
AACTAGGGAGGAACGTTTGG+TGG + chr1_4:32596461-32596480 None:intergenic 50.0%
GGAAACTAGGGAGGAACGTT+TGG + chr1_4:32596464-32596483 None:intergenic 50.0%
TTCCTCCCTAGTTTCCACGT+AGG - chr1_4:32596468-32596487 Msa0160380:three_prime_UTR 50.0%
AACCTACGTGGAAACTAGGG+AGG + chr1_4:32596473-32596492 None:intergenic 50.0%
GAAAGGACTTTGGTCTCCAG+AGG - chr1_4:32596625-32596644 Msa0160380:three_prime_UTR 50.0%
AGTTCTGTCCCCAAACTAGC+AGG - chr1_4:32596698-32596717 Msa0160380:CDS 50.0%
! AAAGGTGTGGGAAGAGTTGC+AGG - chr1_4:32596826-32596845 Msa0160380:CDS 50.0%
CACTCACAAACCACTCTCTG+AGG - chr1_4:32597186-32597205 Msa0160380:CDS 50.0%
GCCAACTGTTTCGGTTTCCT+CGG - chr1_4:32597606-32597625 Msa0160380:intron 50.0%
TCCGAGGAAACCGAAACAGT+TGG + chr1_4:32597610-32597629 None:intergenic 50.0%
ACTGTTTCGGTTTCCTCGGA+CGG - chr1_4:32597610-32597629 Msa0160380:intron 50.0%
CTCGGACGGAGTTCATAACT+GGG - chr1_4:32597624-32597643 Msa0160380:intron 50.0%
GGAAGAGACACAGATGGTGA+TGG - chr1_4:32597925-32597944 Msa0160380:CDS 50.0%
ACTAGGGAGGAACGTTTGGT+GGG + chr1_4:32596460-32596479 None:intergenic 50.0%
AACTAGGGAGGAACGTTTGG+TGG + chr1_4:32596461-32596480 None:intergenic 50.0%
GGAAACTAGGGAGGAACGTT+TGG + chr1_4:32596464-32596483 None:intergenic 50.0%
TTCCTCCCTAGTTTCCACGT+AGG - chr1_4:32596468-32596487 Msa0160380:three_prime_UTR 50.0%
AACCTACGTGGAAACTAGGG+AGG + chr1_4:32596473-32596492 None:intergenic 50.0%
GAAAGGACTTTGGTCTCCAG+AGG - chr1_4:32596625-32596644 Msa0160380:three_prime_UTR 50.0%
AGTTCTGTCCCCAAACTAGC+AGG - chr1_4:32596698-32596717 Msa0160380:CDS 50.0%
! AAAGGTGTGGGAAGAGTTGC+AGG - chr1_4:32596826-32596845 Msa0160380:CDS 50.0%
CACTCACAAACCACTCTCTG+AGG - chr1_4:32597186-32597205 Msa0160380:CDS 50.0%
GCCAACTGTTTCGGTTTCCT+CGG - chr1_4:32597606-32597625 Msa0160380:intron 50.0%
TCCGAGGAAACCGAAACAGT+TGG + chr1_4:32597610-32597629 None:intergenic 50.0%
ACTGTTTCGGTTTCCTCGGA+CGG - chr1_4:32597610-32597629 Msa0160380:intron 50.0%
CTCGGACGGAGTTCATAACT+GGG - chr1_4:32597624-32597643 Msa0160380:intron 50.0%
GGAAGAGACACAGATGGTGA+TGG - chr1_4:32597925-32597944 Msa0160380:CDS 50.0%
! CTAGGGAGGAACGTTTGGTG+GGG + chr1_4:32596459-32596478 None:intergenic 55.0%
CCAGTTATGAACTCCGTCCG+AGG + chr1_4:32597626-32597645 None:intergenic 55.0%
CCTCGGACGGAGTTCATAAC+TGG - chr1_4:32597623-32597642 Msa0160380:intron 55.0%
! CTAGGGAGGAACGTTTGGTG+GGG + chr1_4:32596459-32596478 None:intergenic 55.0%
CCAGTTATGAACTCCGTCCG+AGG + chr1_4:32597626-32597645 None:intergenic 55.0%
CCTCGGACGGAGTTCATAAC+TGG - chr1_4:32597623-32597642 Msa0160380:intron 55.0%
! GAGGAACGTTTGGTGGGGTG+AGG + chr1_4:32596454-32596473 None:intergenic 60.0%
! GAGGAACGTTTGGTGGGGTG+AGG + chr1_4:32596454-32596473 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 32596356 32598261 32596356 ID=Msa0160380;Name=Msa0160380
chr1_4 mRNA 32596356 32598261 32596356 ID=Msa0160380-mRNA-1;Parent=Msa0160380;Name=Msa0160380-mRNA-1;_AED=0.02;_eAED=0.02;_QI=231|1|1|1|1|1|3|340|368
chr1_4 exon 32596356 32597539 32596356 ID=Msa0160380-mRNA-1:exon:10304;Parent=Msa0160380-mRNA-1
chr1_4 exon 32597668 32597797 32597668 ID=Msa0160380-mRNA-1:exon:10303;Parent=Msa0160380-mRNA-1
chr1_4 exon 32597898 32598261 32597898 ID=Msa0160380-mRNA-1:exon:10302;Parent=Msa0160380-mRNA-1
chr1_4 five_prime_UTR 32598031 32598261 32598031 ID=Msa0160380-mRNA-1:five_prime_utr;Parent=Msa0160380-mRNA-1
chr1_4 CDS 32597898 32598030 32597898 ID=Msa0160380-mRNA-1:cds;Parent=Msa0160380-mRNA-1
chr1_4 CDS 32597668 32597797 32597668 ID=Msa0160380-mRNA-1:cds;Parent=Msa0160380-mRNA-1
chr1_4 CDS 32596696 32597539 32596696 ID=Msa0160380-mRNA-1:cds;Parent=Msa0160380-mRNA-1
chr1_4 three_prime_UTR 32596356 32596695 32596356 ID=Msa0160380-mRNA-1:three_prime_utr;Parent=Msa0160380-mRNA-1
Gene Sequence

>Msa0160380

ATGGGAAGACATTCTTGCTGCTACAAGCAGAAGTTAAGGAAAGGACTTTGGTCTCCAGAGGAAGATGAGAAACTTCTGAATTACATTACCAAACATGGTCATGGATGTTGGAGTTCTGTCCCCAAACTAGCAGGTTTGCAAAGGTGTGGGAAGAGTTGCAGGTTAAGATGGATAAATTACTTGAGGCCTGATTTGAAAAGAGGAGCATTCTCACAACAAGAAGAGAATTTGATCATTGAACTTCATGCAGTACTTGGTAACAGATGGTCTCAGATTGCAGCACAATTACCAGGAAGAACAGACAATGAGATTAAAAATCTATGGAATTCATGTCTCAAGAAAAGATTGAGACAAAGTGGCATTGATCCAAACACTCACAAACCACTCTCTGAGGTTGAAAATGACAATGAAAAATCACTCACATCCAACAAAACCAATCAAAAAGCTTCAGTTTCATCTAATGAAGTCATGAGTTTGATGATTGAACCTACAAAAACTTCTATAGAAGGATACCCTCTAGAAGTTTCTACTACCTCAAAGATCAACAACAGTAGCAGCAGCAGCCATGAATTATTCCTAGATACCAGGTTTGGTAGCAGTTCAAGTTATTTTTCTTTCCAGAACTTGAACTATGGATCAAACATAGGGATTTCTGAAAATCCAAATGCATCTATTTGTTTCACACCAACTTCAACTTCGTCACAAATTATGTCAGATACAAATTCTGTTATAACTTCCAATATGCTCCATTCTGTATCACCCTCAATTTTCTCAACTTCAACACATGTTAAGCCAACTGTTTCGGTTTCCTCGGACGGAGTTCATAACTGGGAAGCAAGTAACTACCACAACATTAACAACACAAACAACGGCGCTTTACCGTTACAAGAAGAAATGAAATGGTCTGAGTATCTTAACACACCATTTCTTATGCAGAATCAACCTTCCCCATCAATGTACACTGAGGCTAAACCAGAAACAGGTTTCATAACAGATGAATCATGTACTAGTTGGCAGCAGCAGCAGCAACAACAAAATTTTCAACTTTCTGATATATATAGCAAGGATCTGCAGAGATTTTCAGTGGCTTTTGGACAAACTATGTAG
Protein sequence

>Msa0160380

MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQSGIDPNTHKPLSEVENDNEKSLTSNKTNQKASVSSNEVMSLMIEPTKTSIEGYPLEVSTTSKINNSSSSSHELFLDTRFGSSSSYFSFQNLNYGSNIGISENPNASICFTPTSTSSQIMSDTNSVITSNMLHSVSPSIFSTSTHVKPTVSVSSDGVHNWEASNYHNINNTNNGALPLQEEMKWSEYLNTPFLMQNQPSPSMYTEAKPETGFITDESCTSWQQQQQQQNFQLSDIYSKDLQRFSVAFGQTM*