AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0645390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645390 MtrunA17_Chr4g0033391 83.178 321 28 4 1 320 1 296 0.0 522
Msa0645390 MtrunA17_Chr4g0033281 88.438 320 18 3 1 320 1 301 0.0 520
Msa0645390 MtrunA17_Chr4g0033291 83.230 322 34 4 1 320 1 304 0.0 507
Msa0645390 MtrunA17_Chr2g0307131 65.143 350 73 7 1 320 1 331 8.83e-140 399
Msa0645390 MtrunA17_Chr6g0468491 65.584 308 77 8 23 320 1 289 5.57e-130 373
Msa0645390 MtrunA17_Chr2g0307141 63.429 350 83 7 1 320 1 335 5.58e-129 372
Msa0645390 MtrunA17_Chr6g0468461 57.267 344 90 9 1 320 1 311 3.45e-112 329
Msa0645390 MtrunA17_Chr7g0225901 57.947 302 61 7 23 320 1 240 2.87e-105 308
Msa0645390 MtrunA17_Chr4g0054581 53.719 363 116 8 1 320 1 354 2.59e-102 305
Msa0645390 MtrunA17_Chr4g0054621 46.957 345 130 11 1 320 1 317 1.81e-80 248
Msa0645390 MtrunA17_Chr5g0400621 43.252 326 139 13 17 326 20 315 2.04e-57 188
Msa0645390 MtrunA17_Chr5g0400641 54.545 154 59 4 174 320 1 150 2.91e-42 144
Msa0645390 MtrunA17_Chr4g0054551 38.115 244 126 6 97 320 67 305 4.31e-40 143
Msa0645390 MtrunA17_Chr4g0054561 38.525 244 125 6 97 320 67 305 4.36e-40 143
Msa0645390 MtrunA17_Chr5g0400661 34.639 332 169 11 13 320 7 314 5.16e-39 140
Msa0645390 MtrunA17_Chr2g0280161 43.915 189 95 3 138 322 151 332 7.14e-38 138
Msa0645390 MtrunA17_Chr2g0333641 36.981 265 143 8 60 320 43 287 3.13e-37 135
Msa0645390 MtrunA17_Chr2g0333621 39.171 217 120 4 109 320 82 291 6.19e-37 134
Msa0645390 MtrunA17_Chr8g0336681 38.288 222 119 4 109 320 102 315 2.16e-36 134
Msa0645390 MtrunA17_Chr5g0400671 42.458 179 98 2 146 320 126 303 3.46e-36 133
Msa0645390 MtrunA17_Chr4g0049331 37.037 243 135 5 92 322 53 289 7.50e-36 131
Msa0645390 MtrunA17_Chr4g0054571 48.780 164 72 4 168 320 147 309 5.75e-35 130
Msa0645390 MtrunA17_Chr4g0002801 42.690 171 83 5 163 320 142 310 2.15e-34 128
Msa0645390 MtrunA17_Chr4g0002781 39.572 187 103 3 142 320 145 329 2.90e-34 128
Msa0645390 MtrunA17_Chr7g0249811 38.220 191 109 3 130 320 127 308 2.27e-30 117
Msa0645390 MtrunA17_Chr2g0333541 43.787 169 86 4 160 320 81 248 6.62e-29 112
Msa0645390 MtrunA17_Chr2g0333611 39.535 172 85 6 160 320 32 195 1.08e-28 110
Msa0645390 MtrunA17_Chr8g0346161 30.526 190 117 5 143 325 263 444 1.53e-18 86.3
Msa0645390 MtrunA17_Chr1g0185621 31.250 144 84 2 171 301 475 616 4.97e-17 82.0
Msa0645390 MtrunA17_Chr8g0366751 31.138 167 91 2 162 304 443 609 5.10e-17 82.0
Msa0645390 MtrunA17_Chr4g0002831 33.775 151 86 5 173 320 45 184 1.47e-15 74.3
Msa0645390 MtrunA17_Chr5g0411341 30.270 185 106 4 156 322 474 653 2.08e-15 77.0
Msa0645390 MtrunA17_Chr7g0233441 33.582 134 68 2 194 320 57 176 5.86e-15 72.4
Msa0645390 MtrunA17_Chr8g0365711 26.904 197 123 6 142 325 219 407 1.14e-14 74.3
Msa0645390 MtrunA17_Chr8g0346151 26.396 197 106 5 155 322 246 432 2.35e-14 73.6
Msa0645390 MtrunA17_Chr7g0275821 30.323 155 99 3 167 317 244 393 4.36e-14 72.8
Msa0645390 MtrunA17_Chr4g0002851 32.450 151 70 4 178 320 50 176 6.09e-14 69.7
Msa0645390 MtrunA17_Chr7g0260841 42.529 87 46 1 156 238 336 422 2.96e-13 70.5
Msa0645390 MtrunA17_Chr3g0131691 27.485 171 111 2 157 314 284 454 7.42e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645390 AT4G37850.2 47.853 163 75 5 164 319 145 304 4.59e-36 133
Msa0645390 AT4G37850.1 47.853 163 75 5 164 319 145 304 4.59e-36 133
Msa0645390 AT2G22760.2 40.237 169 95 2 160 322 108 276 1.46e-34 128
Msa0645390 AT2G22760.1 40.120 167 94 2 160 320 108 274 7.52e-33 124
Msa0645390 AT2G22750.4 45.349 172 84 4 157 319 139 309 6.68e-31 119
Msa0645390 AT2G22750.1 45.349 172 84 4 157 319 111 281 7.07e-31 119
Msa0645390 AT2G22750.3 45.349 172 84 4 157 319 139 309 7.55e-31 119
Msa0645390 AT2G22750.2 45.349 172 84 4 157 319 111 281 7.92e-31 118
Msa0645390 AT2G22750.5 45.349 172 84 4 157 319 135 305 8.97e-31 119
Msa0645390 AT2G22770.1 37.278 169 88 1 170 320 131 299 2.09e-27 109
Msa0645390 AT4G17880.1 31.760 233 118 6 114 322 350 565 5.92e-20 90.9
Msa0645390 AT5G46760.1 35.542 166 85 6 156 301 396 559 2.25e-19 89.4
Msa0645390 AT1G32640.1 32.386 176 106 5 155 322 432 602 5.12e-17 82.4
Msa0645390 AT2G46510.1 47.297 74 29 1 163 226 377 450 1.75e-14 74.7
Msa0645390 AT1G01260.1 37.143 105 63 1 161 262 420 524 2.56e-14 73.9
Msa0645390 AT1G01260.2 37.143 105 63 1 161 262 420 524 2.56e-14 73.9
Msa0645390 AT1G01260.3 37.143 105 63 1 161 262 420 524 2.56e-14 73.9
Msa0645390 AT4G16430.1 39.216 102 58 1 156 253 301 402 3.49e-14 73.6
Msa0645390 AT4G09820.1 30.769 130 73 1 160 289 352 464 5.20e-13 70.1
Msa0645390 AT5G46830.1 41.667 96 42 2 167 248 335 430 1.25e-12 68.9
Msa0645390 AT4G00870.1 34.188 117 65 2 172 279 250 363 1.96e-12 68.2
Msa0645390 AT5G41315.3 29.310 174 92 6 171 316 446 616 2.10e-11 65.5
Msa0645390 AT5G41315.2 29.310 174 92 6 171 316 449 619 2.14e-11 65.5
Msa0645390 AT5G41315.1 29.310 174 92 6 171 316 441 611 2.19e-11 65.1
Msa0645390 AT1G63650.3 27.219 169 97 4 171 316 405 570 8.99e-11 63.2
Msa0645390 AT1G63650.1 27.219 169 97 4 171 316 405 570 8.99e-11 63.2
Msa0645390 AT1G63650.2 27.219 169 97 4 171 316 405 570 8.99e-11 63.2

Find 51 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGTTTAATGGCAATTTAA+AGG 0.241233 4_3:-50582079 None:intergenic
CAGCAGCTGGTTAACTGATT+TGG 0.268145 4_3:+50577613 Msa0645390:CDS
CAAGTGGAAGCAAGAGTATT+AGG 0.274085 4_3:+50581890 Msa0645390:CDS
TCTTGTTCCTAACCTTAAAA+AGG 0.274757 4_3:+50578454 Msa0645390:CDS
ATTGATGATACTTTCATTGC+TGG 0.287035 4_3:-50577590 None:intergenic
TCAAGAGCACAAGGGGCTTT+TGG 0.303932 4_3:+50581940 Msa0645390:CDS
CATCAGCATCAAGGAAATTC+AGG 0.324134 4_3:-50577980 None:intergenic
GATGGTGATGGAGAAATATT+TGG 0.350142 4_3:-50578158 None:intergenic
CTGCAAGAGCAATGAAGGTT+TGG 0.363766 4_3:-50578430 None:intergenic
ATCAGTGTCTCCAACCGAAT+TGG 0.364748 4_3:+50578265 Msa0645390:CDS
GATAGTGTTGAATGTGTTGT+TGG 0.376948 4_3:+50581857 Msa0645390:CDS
ACTCTTGCTTCCACTTGAAA+TGG 0.401306 4_3:-50581884 None:intergenic
ATCGCTGCATAGGCATGGTT+TGG 0.409003 4_3:-50581813 None:intergenic
TTTAATGGCAATTTAAAGGA+TGG 0.412231 4_3:-50582075 None:intergenic
AATAGCAGTGTCTTACCCTT+TGG 0.414898 4_3:+50582007 Msa0645390:CDS
TAGGAAAACAAATGTTGATT+CGG 0.415655 4_3:+50581909 Msa0645390:CDS
TGCAAGAGCAATGAAGGTTT+GGG 0.438568 4_3:-50578429 None:intergenic
CACTCAACAGAAACCTCAAA+AGG 0.444007 4_3:+50578299 Msa0645390:CDS
CAAACAACAATGTTTAACTC+TGG 0.449913 4_3:+50578052 Msa0645390:CDS
GCGGAGATTATTTGTGGAAG+TGG 0.452185 4_3:-50578078 None:intergenic
AAAGAGGAGTTAGATGGTGA+TGG 0.464747 4_3:-50578170 None:intergenic
AAACAACAATGTTTAACTCT+GGG 0.467228 4_3:+50578053 Msa0645390:CDS
TTGATGATACTTTCATTGCT+GGG 0.467665 4_3:-50577589 None:intergenic
AAGAGCTGCAAGAGCAATGA+AGG 0.494766 4_3:-50578435 None:intergenic
AACTGAAAAGAGGAGTTAGA+TGG 0.496291 4_3:-50578176 None:intergenic
AACTACTACCTGAGCAATGA+TGG 0.499933 4_3:-50582050 None:intergenic
AATTTCCTTGATGCTGATGT+AGG 0.503309 4_3:+50577984 Msa0645390:CDS
AGCAAAAGGCCTCGTGCTCA+TGG 0.511731 4_3:+50578362 Msa0645390:CDS
TTAATGGCAATTTAAAGGAT+GGG 0.512013 4_3:-50582074 None:intergenic
TTCCTTGATGCTGATGTAGG+AGG 0.513457 4_3:+50577987 Msa0645390:CDS
TGACTTGCGGAGATTATTTG+TGG 0.517120 4_3:-50578084 None:intergenic
TGACATTACCATCATTGCTC+AGG 0.520672 4_3:+50582042 Msa0645390:CDS
AGAAACCTCAAAAGGGTCGT+TGG 0.545529 4_3:+50578307 Msa0645390:CDS
TCCTTGATGCTGATGTAGGA+GGG 0.555978 4_3:+50577988 Msa0645390:CDS
AAGTATCATCAATCAGCAGC+TGG 0.573007 4_3:+50577600 Msa0645390:CDS
GTCAAGTGTAGAATCTCCAA+AGG 0.576619 4_3:-50582023 None:intergenic
TCTTCATCGCTGCATAGGCA+TGG 0.581383 4_3:-50581818 None:intergenic
AAGAATCTTCATCGCTGCAT+AGG 0.581886 4_3:-50581823 None:intergenic
ACCCTCCTACATCAGCATCA+AGG 0.584158 4_3:-50577989 None:intergenic
TGGTATTTGAAACTGAAAAG+AGG 0.585974 4_3:-50578186 None:intergenic
ACTCAACAGAAACCTCAAAA+GGG 0.587077 4_3:+50578300 Msa0645390:CDS
TACAATGTCAAGAGCACAAG+GGG 0.594830 4_3:+50581933 Msa0645390:CDS
TGTTGGTTCACCATTTCAAG+TGG 0.611743 4_3:+50581874 Msa0645390:CDS
GATACAATGTCAAGAGCACA+AGG 0.611765 4_3:+50581931 Msa0645390:CDS
TCAAGTGTAGAATCTCCAAA+GGG 0.613125 4_3:-50582022 None:intergenic
CGAATACAATATATTTGCTG+AGG 0.615306 4_3:+50577950 Msa0645390:CDS
TTTCATGAATGAATGACTTG+CGG 0.621325 4_3:-50578097 None:intergenic
AACAACAATGTTTAACTCTG+GGG 0.649069 4_3:+50578054 Msa0645390:CDS
TCATGGTAGAGATCACATCA+TGG 0.685356 4_3:+50578379 Msa0645390:CDS
TGATCTCTACCATGAGCACG+AGG 0.691122 4_3:-50578371 None:intergenic
ATACAATGTCAAGAGCACAA+GGG 0.744485 4_3:+50581932 Msa0645390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CGATTATTAATTAATTATTT+TGG + chr4_3:50577655-50577674 Msa0645390:intron 10.0%
!!! AACTTTTTTTTTTTTTTTTC+AGG + chr4_3:50577920-50577939 Msa0645390:intron 10.0%
!! ACAAATTAGTAATATTAATT+GGG + chr4_3:50579920-50579939 Msa0645390:intron 10.0%
!! TATTTGTTTATAAATGTAAT+CGG - chr4_3:50580103-50580122 None:intergenic 10.0%
!! AAAAATAATTAAGGAATTAA+TGG + chr4_3:50580795-50580814 Msa0645390:intron 10.0%
!! AAAATAATTAAGGAATTAAT+GGG + chr4_3:50580796-50580815 Msa0645390:intron 10.0%
!! AAAAATGATTGTTAATTTAT+TGG + chr4_3:50580836-50580855 Msa0645390:intron 10.0%
!! AAAATTGATTGTTAATTTAT+TGG + chr4_3:50580872-50580891 Msa0645390:intron 10.0%
!!! TTTTTTTAAAATTTCGTTTT+AGG - chr4_3:50581051-50581070 None:intergenic 10.0%
!!! TCTATGTTTATTCTTATTTA+AGG - chr4_3:50577799-50577818 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTGACAAG+AGG - chr4_3:50578703-50578722 None:intergenic 15.0%
!!! TATTTTGACCAATATATAAA+GGG - chr4_3:50578735-50578754 None:intergenic 15.0%
!!! AGTATTTTTATAATAATGAC+CGG - chr4_3:50578777-50578796 None:intergenic 15.0%
!! TTCTCTTAAATAAAATCAAA+GGG - chr4_3:50579107-50579126 None:intergenic 15.0%
!! TTTCTCTTAAATAAAATCAA+AGG - chr4_3:50579108-50579127 None:intergenic 15.0%
!! TGTTGTTCTATAAAATAAAA+TGG + chr4_3:50579448-50579467 Msa0645390:intron 15.0%
!!! AATTGTAGAGTATTTTATTT+GGG - chr4_3:50579646-50579665 None:intergenic 15.0%
!!! AAATTGTAGAGTATTTTATT+TGG - chr4_3:50579647-50579666 None:intergenic 15.0%
!! GACAAATTAGTAATATTAAT+TGG + chr4_3:50579919-50579938 Msa0645390:intron 15.0%
!! CAAATTAGTAATATTAATTG+GGG + chr4_3:50579921-50579940 Msa0645390:intron 15.0%
!! AAATTAGTAATATTAATTGG+GGG + chr4_3:50579922-50579941 Msa0645390:intron 15.0%
!! ATTTGTTTATAAATGTAATC+GGG - chr4_3:50580102-50580121 None:intergenic 15.0%
!!! TCAATAAAATCACATTTTTA+AGG - chr4_3:50580354-50580373 None:intergenic 15.0%
!!! TTATTTTGACCATATATTAA+CGG - chr4_3:50580413-50580432 None:intergenic 15.0%
!! ATGAAAAAGGTAAAAAAAAT+AGG + chr4_3:50580765-50580784 Msa0645390:intron 15.0%
!!! ATTTTATGATCTCTAATAAT+TGG - chr4_3:50581282-50581301 None:intergenic 15.0%
!!! GTTTATTCTTATTTAAGGTT+AGG - chr4_3:50577794-50577813 None:intergenic 20.0%
!! GTCTACAAATATATTTGAAA+AGG - chr4_3:50577839-50577858 None:intergenic 20.0%
!!! TAATTGATGATTTTAAGAGT+TGG - chr4_3:50578510-50578529 None:intergenic 20.0%
!! TAACATTTCCCTTTATATAT+TGG + chr4_3:50578724-50578743 Msa0645390:intron 20.0%
!!! CTATTTTGACCAATATATAA+AGG - chr4_3:50578736-50578755 None:intergenic 20.0%
!! ACATTCTTATCTTTCTATAA+AGG + chr4_3:50579017-50579036 Msa0645390:intron 20.0%
!! AAATTCTTGATAAAAAGCTT+CGG + chr4_3:50579413-50579432 Msa0645390:intron 20.0%
!! AAATGGAAAATGTTATCTTA+AGG + chr4_3:50579465-50579484 Msa0645390:intron 20.0%
!! AATGGAAAATGTTATCTTAA+GGG + chr4_3:50579466-50579485 Msa0645390:intron 20.0%
!!! AAAGTATACTACTACTTTTA+AGG - chr4_3:50579692-50579711 None:intergenic 20.0%
!! TTTAATACACATACAAACAA+AGG - chr4_3:50579879-50579898 None:intergenic 20.0%
!! GGACAAAAATAAAATCAAAT+GGG + chr4_3:50580004-50580023 Msa0645390:intron 20.0%
!! TTTGTTTATAAATGTAATCG+GGG - chr4_3:50580101-50580120 None:intergenic 20.0%
!!! TAAACAAATACCAACTTTTT+AGG + chr4_3:50580113-50580132 Msa0645390:intron 20.0%
!! ATTCAATTAACCTAAAAAGT+TGG - chr4_3:50580126-50580145 None:intergenic 20.0%
!! AACAATTAGAATTATCATGA+GGG + chr4_3:50580284-50580303 Msa0645390:intron 20.0%
!!! CACTTTAGTTCAAAATAAAT+AGG + chr4_3:50580316-50580335 Msa0645390:intron 20.0%
!!! TTGATTTTGTTTATTTGCAA+CGG + chr4_3:50580370-50580389 Msa0645390:intron 20.0%
!!! TTAACTTTTCCGTTAATATA+TGG + chr4_3:50580401-50580420 Msa0645390:intron 20.0%
!! AAAAGGTAAAAAAAATAGGA+AGG + chr4_3:50580769-50580788 Msa0645390:intron 20.0%
!! ACATATTAATTCTCTTACTT+GGG - chr4_3:50580963-50580982 None:intergenic 20.0%
!! AACATATTAATTCTCTTACT+TGG - chr4_3:50580964-50580983 None:intergenic 20.0%
!! AGTAAGAGAATTAATATGTT+TGG + chr4_3:50580964-50580983 Msa0645390:intron 20.0%
!! TACTCATATTTAATTAGTGT+CGG - chr4_3:50581119-50581138 None:intergenic 20.0%
!! TTAGAGATAAAGATAAATCT+TGG + chr4_3:50581627-50581646 Msa0645390:intron 20.0%
! TTTGGTAAGAAAATCACATA+TGG + chr4_3:50577631-50577650 Msa0645390:intron 25.0%
! AAACAACAATGTTTAACTCT+GGG + chr4_3:50578053-50578072 Msa0645390:CDS 25.0%
!! GTGATTCATATTTTCCAATT+CGG - chr4_3:50578282-50578301 None:intergenic 25.0%
!!! TAAAGTATCGTACCTTTTTA+AGG - chr4_3:50578469-50578488 None:intergenic 25.0%
!! TTTTTATAATAATGACCGGA+AGG - chr4_3:50578773-50578792 None:intergenic 25.0%
!!! TAAGCAAAAGACTACTTTTT+AGG - chr4_3:50578896-50578915 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr4_3:50579225-50579244 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr4_3:50579238-50579257 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG + chr4_3:50579237-50579256 Msa0645390:intron 25.0%
!! ACTGCTACTTCAAAAAAATA+TGG + chr4_3:50579326-50579345 Msa0645390:intron 25.0%
!! CTGCTACTTCAAAAAAATAT+GGG + chr4_3:50579327-50579346 Msa0645390:intron 25.0%
! AATTCTTGATAAAAAGCTTC+GGG + chr4_3:50579414-50579433 Msa0645390:intron 25.0%
! ACAAGTTAAGGATCTATAAA+AGG - chr4_3:50579598-50579617 None:intergenic 25.0%
! AGAAATGTGAAAAATGCAAA+GGG - chr4_3:50579796-50579815 None:intergenic 25.0%
! AAGAAATGTGAAAAATGCAA+AGG - chr4_3:50579797-50579816 None:intergenic 25.0%
! ATGCATCTAGTAATTTGAAA+AGG + chr4_3:50579968-50579987 Msa0645390:intron 25.0%
! TGCATCTAGTAATTTGAAAA+GGG + chr4_3:50579969-50579988 Msa0645390:intron 25.0%
! GGGACAAAAATAAAATCAAA+TGG + chr4_3:50580003-50580022 Msa0645390:intron 25.0%
! CAAAAATAAAATCAAATGGG+TGG + chr4_3:50580007-50580026 Msa0645390:intron 25.0%
!!! GTTTTAATGAATACTTACTC+TGG - chr4_3:50580214-50580233 None:intergenic 25.0%
! TTAATACAGCAACAAATTGT+AGG + chr4_3:50580253-50580272 Msa0645390:intron 25.0%
! CTCATGATAATTCTAATTGT+TGG - chr4_3:50580285-50580304 None:intergenic 25.0%
! CAACAATTAGAATTATCATG+AGG + chr4_3:50580283-50580302 Msa0645390:intron 25.0%
!!! AATCACATTTTTAAGGAATG+TGG - chr4_3:50580347-50580366 None:intergenic 25.0%
! AGTTATATAAATAGTGCACA+TGG + chr4_3:50580432-50580451 Msa0645390:intron 25.0%
! AGTTATATAAATAGTGCACA+TGG + chr4_3:50580432-50580451 Msa0645390:intron 25.0%
! GGAAGGAGAAAAAATAATTA+AGG + chr4_3:50580786-50580805 Msa0645390:intron 25.0%
!! TAATTAAGGAATTAATGGGT+TGG + chr4_3:50580800-50580819 Msa0645390:intron 25.0%
! TGATTCAATCACAAATGTAA+GGG - chr4_3:50580933-50580952 None:intergenic 25.0%
! ATGATTCAATCACAAATGTA+AGG - chr4_3:50580934-50580953 None:intergenic 25.0%
! TTTAGGCCTAAAAATACATT+GGG - chr4_3:50581034-50581053 None:intergenic 25.0%
!! TTTTAGGCCTAAAAATACAT+TGG - chr4_3:50581035-50581054 None:intergenic 25.0%
! CAAAAAAATGAAGCCTAATA+CGG + chr4_3:50581474-50581493 Msa0645390:intron 25.0%
! TAAAACAATGCTACATAGTA+GGG - chr4_3:50581557-50581576 None:intergenic 25.0%
!! TAGGAAAACAAATGTTGATT+CGG + chr4_3:50581909-50581928 Msa0645390:CDS 25.0%
! TTAATGGCAATTTAAAGGAT+GGG - chr4_3:50582077-50582096 None:intergenic 25.0%
! TTGATGATACTTTCATTGCT+GGG - chr4_3:50577592-50577611 None:intergenic 30.0%
! ATTGATGATACTTTCATTGC+TGG - chr4_3:50577593-50577612 None:intergenic 30.0%
! CGAATACAATATATTTGCTG+AGG + chr4_3:50577950-50577969 Msa0645390:CDS 30.0%
CAAACAACAATGTTTAACTC+TGG + chr4_3:50578052-50578071 Msa0645390:CDS 30.0%
AACAACAATGTTTAACTCTG+GGG + chr4_3:50578054-50578073 Msa0645390:CDS 30.0%
TTTCATGAATGAATGACTTG+CGG - chr4_3:50578100-50578119 None:intergenic 30.0%
! TGGTATTTGAAACTGAAAAG+AGG - chr4_3:50578189-50578208 None:intergenic 30.0%
!!! ATTCTCTTTTGAGTTACTAG+GGG - chr4_3:50578237-50578256 None:intergenic 30.0%
!!! CATTCTCTTTTGAGTTACTA+GGG - chr4_3:50578238-50578257 None:intergenic 30.0%
!!! TCATTCTCTTTTGAGTTACT+AGG - chr4_3:50578239-50578258 None:intergenic 30.0%
! TTCATATTTTCCAATTCGGT+TGG - chr4_3:50578278-50578297 None:intergenic 30.0%
CAAAAACCTCAAAAAGCAAA+AGG + chr4_3:50578348-50578367 Msa0645390:CDS 30.0%
TCTTGTTCCTAACCTTAAAA+AGG + chr4_3:50578454-50578473 Msa0645390:CDS 30.0%
!!! TATCGTACCTTTTTAAGGTT+AGG - chr4_3:50578464-50578483 None:intergenic 30.0%
!! GATTTTAAGAGTTGGCTAAT+AGG - chr4_3:50578502-50578521 None:intergenic 30.0%
GATTATATAGATACTCCTTC+CGG + chr4_3:50578755-50578774 Msa0645390:intron 30.0%
TATGAAATGAGTGATGTATG+TGG - chr4_3:50578871-50578890 None:intergenic 30.0%
CTTTCTATAAAGGAAAATGC+TGG + chr4_3:50579027-50579046 Msa0645390:intron 30.0%
ATGAAATTTCCAGAATGTGT+TGG + chr4_3:50579070-50579089 Msa0645390:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr4_3:50579140-50579159 Msa0645390:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr4_3:50579212-50579231 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr4_3:50579263-50579282 Msa0645390:intron 30.0%
!! ATCCTTAACTTGTATCCTTA+GGG + chr4_3:50579605-50579624 Msa0645390:intron 30.0%
! AGTATTTAGTTCCAGTTGAT+AGG - chr4_3:50579750-50579769 None:intergenic 30.0%
AAATGTGAAAAATGCAAAGG+GGG - chr4_3:50579794-50579813 None:intergenic 30.0%
GAAATGTGAAAAATGCAAAG+GGG - chr4_3:50579795-50579814 None:intergenic 30.0%
CATACAAACAAAGGACAATT+TGG - chr4_3:50579870-50579889 None:intergenic 30.0%
! TATTAATTGGGGGTATGTTT+AGG + chr4_3:50579932-50579951 Msa0645390:intron 30.0%
GCATCTAGTAATTTGAAAAG+GGG + chr4_3:50579970-50579989 Msa0645390:intron 30.0%
CATCTAGTAATTTGAAAAGG+GGG + chr4_3:50579971-50579990 Msa0645390:intron 30.0%
GCTGTATTAATTACTACAAG+TGG - chr4_3:50580243-50580262 None:intergenic 30.0%
!! ATTTTGTTTATTTGCAACGG+AGG + chr4_3:50580373-50580392 Msa0645390:intron 30.0%
!! TTTTGTTTATTTGCAACGGA+GGG + chr4_3:50580374-50580393 Msa0645390:intron 30.0%
!! CTTTGACTTGTATTTATGAG+CGG + chr4_3:50580490-50580509 Msa0645390:intron 30.0%
!! CTTCTTTTAAAGATGAGTAG+TGG + chr4_3:50580721-50580740 Msa0645390:intron 30.0%
GGTTTAGAAAACAAATACTC+CGG + chr4_3:50580893-50580912 Msa0645390:intron 30.0%
!! AAGGGTTTTGATATATACTC+CGG - chr4_3:50580915-50580934 None:intergenic 30.0%
TATAGAATCACTTTCGATTG+AGG - chr4_3:50581086-50581105 None:intergenic 30.0%
!!! AATTTTTTAGGCTCCGTATT+AGG - chr4_3:50581490-50581509 None:intergenic 30.0%
GTAAAACAATGCTACATAGT+AGG - chr4_3:50581558-50581577 None:intergenic 30.0%
ATCTGTAAAAATCTGCTAGA+TGG + chr4_3:50581685-50581704 Msa0645390:intron 30.0%
GAAAGAGCTTAAAAATCGTT+TGG + chr4_3:50581745-50581764 Msa0645390:CDS 30.0%
TGAGACAAATCTTGGAGATT+TGG - chr4_3:50577861-50577880 None:intergenic 35.0%
AATTTCCTTGATGCTGATGT+AGG + chr4_3:50577984-50578003 Msa0645390:CDS 35.0%
!! GATGGTGATGGAGAAATATT+TGG - chr4_3:50578161-50578180 None:intergenic 35.0%
AACTGAAAAGAGGAGTTAGA+TGG - chr4_3:50578179-50578198 None:intergenic 35.0%
!!! TTCTCTTTTGAGTTACTAGG+GGG - chr4_3:50578236-50578255 None:intergenic 35.0%
ACTCAACAGAAACCTCAAAA+GGG + chr4_3:50578300-50578319 Msa0645390:CDS 35.0%
GTCGTTGGAAAAAGAAAACA+TGG + chr4_3:50578322-50578341 Msa0645390:CDS 35.0%
CATCGAAGAAATGATGTATG+TGG + chr4_3:50578806-50578825 Msa0645390:intron 35.0%
GATGTATGTGGTCTATTATG+TGG + chr4_3:50578818-50578837 Msa0645390:intron 35.0%
ATGTACACTACTACTTTCTC+TGG - chr4_3:50578928-50578947 None:intergenic 35.0%
AGAGAAAGTAGTAGTGTACA+TGG + chr4_3:50578927-50578946 Msa0645390:intron 35.0%
GACATGTATTTATGAGTGCA+AGG + chr4_3:50578959-50578978 Msa0645390:intron 35.0%
AGTGCAAGGAGTCATAATAT+AGG + chr4_3:50578973-50578992 Msa0645390:intron 35.0%
! CACATTCTGGAAATTTCATG+AGG - chr4_3:50579069-50579088 None:intergenic 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr4_3:50579145-50579164 None:intergenic 35.0%
TTTATCAAGAATTTGTCCCG+AGG - chr4_3:50579407-50579426 None:intergenic 35.0%
!! GATCCTTAACTTGTATCCTT+AGG + chr4_3:50579604-50579623 Msa0645390:intron 35.0%
TACCCTAAGGATACAAGTTA+AGG - chr4_3:50579610-50579629 None:intergenic 35.0%
! TAATGCTAACTTGTACCCTA+AGG - chr4_3:50579623-50579642 None:intergenic 35.0%
AATGTGAAAAATGCAAAGGG+GGG - chr4_3:50579793-50579812 None:intergenic 35.0%
TTGAAAAGGGGGTTACATTT+AGG + chr4_3:50579982-50580001 Msa0645390:intron 35.0%
TGAAAAGGGGGTTACATTTA+GGG + chr4_3:50579983-50580002 Msa0645390:intron 35.0%
TCAAATGGGTGGTTACATTA+AGG + chr4_3:50580018-50580037 Msa0645390:intron 35.0%
CAAATGGGTGGTTACATTAA+GGG + chr4_3:50580019-50580038 Msa0645390:intron 35.0%
! AGCGGATGAAGTACTAATAT+AGG + chr4_3:50580508-50580527 Msa0645390:intron 35.0%
TTGACAATTACTCTGTAGCA+GGG + chr4_3:50581004-50581023 Msa0645390:intron 35.0%
CTTTCGATTGAGGAAACTTA+TGG - chr4_3:50581076-50581095 None:intergenic 35.0%
AGTGGTATGTAATTCGATGT+CGG - chr4_3:50581399-50581418 None:intergenic 35.0%
!!! TTTAGGCCCTCGAATTTTTT+AGG - chr4_3:50581502-50581521 None:intergenic 35.0%
! GATAGTGTTGAATGTGTTGT+TGG + chr4_3:50581857-50581876 Msa0645390:CDS 35.0%
! ATACAATGTCAAGAGCACAA+GGG + chr4_3:50581932-50581951 Msa0645390:CDS 35.0%
!! GGGGCTTTTGGTTAAAATAA+TGG + chr4_3:50581952-50581971 Msa0645390:CDS 35.0%
TCAAGTGTAGAATCTCCAAA+GGG - chr4_3:50582025-50582044 None:intergenic 35.0%
AAGTATCATCAATCAGCAGC+TGG + chr4_3:50577600-50577619 Msa0645390:CDS 40.0%
!! TTGTGACGGATATTCTGAAG+TGG - chr4_3:50577761-50577780 None:intergenic 40.0%
ACTTCAGAATATCCGTCACA+AGG + chr4_3:50577760-50577779 Msa0645390:intron 40.0%
CTTCAGAATATCCGTCACAA+GGG + chr4_3:50577761-50577780 Msa0645390:intron 40.0%
CCAAACGTTGAGACAAATCT+TGG - chr4_3:50577869-50577888 None:intergenic 40.0%
CCAAGATTTGTCTCAACGTT+TGG + chr4_3:50577866-50577885 Msa0645390:intron 40.0%
CATCAGCATCAAGGAAATTC+AGG - chr4_3:50577983-50578002 None:intergenic 40.0%
! TGACTTGCGGAGATTATTTG+TGG - chr4_3:50578087-50578106 None:intergenic 40.0%
AAAGAGGAGTTAGATGGTGA+TGG - chr4_3:50578173-50578192 None:intergenic 40.0%
AGTTACTAGGGGGTGAATTT+GGG - chr4_3:50578226-50578245 None:intergenic 40.0%
CACTCAACAGAAACCTCAAA+AGG + chr4_3:50578299-50578318 Msa0645390:CDS 40.0%
! TTTTTCCAACGACCCTTTTG+AGG - chr4_3:50578315-50578334 None:intergenic 40.0%
TCATGGTAGAGATCACATCA+TGG + chr4_3:50578379-50578398 Msa0645390:CDS 40.0%
TGCAAGAGCAATGAAGGTTT+GGG - chr4_3:50578432-50578451 None:intergenic 40.0%
AGAATGTTGCCAACACATTC+TGG - chr4_3:50579082-50579101 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG - chr4_3:50579202-50579221 None:intergenic 40.0%
GAGTTTATGAACCCGAAACA+CGG + chr4_3:50579721-50579740 Msa0645390:intron 40.0%
GTTGACAATTACTCTGTAGC+AGG + chr4_3:50581003-50581022 Msa0645390:intron 40.0%
GGCCTAAAAATACATTGGGA+CGG - chr4_3:50581030-50581049 None:intergenic 40.0%
TACGGAGCCTAAAAAATTCG+AGG + chr4_3:50581492-50581511 Msa0645390:intron 40.0%
ACGGAGCCTAAAAAATTCGA+GGG + chr4_3:50581493-50581512 Msa0645390:intron 40.0%
AAGAATCTTCATCGCTGCAT+AGG - chr4_3:50581826-50581845 None:intergenic 40.0%
!! TGTTGGTTCACCATTTCAAG+TGG + chr4_3:50581874-50581893 Msa0645390:CDS 40.0%
ACTCTTGCTTCCACTTGAAA+TGG - chr4_3:50581887-50581906 None:intergenic 40.0%
!! CAAGTGGAAGCAAGAGTATT+AGG + chr4_3:50581890-50581909 Msa0645390:CDS 40.0%
! GATACAATGTCAAGAGCACA+AGG + chr4_3:50581931-50581950 Msa0645390:CDS 40.0%
! TACAATGTCAAGAGCACAAG+GGG + chr4_3:50581933-50581952 Msa0645390:CDS 40.0%
AATAGCAGTGTCTTACCCTT+TGG + chr4_3:50582007-50582026 Msa0645390:CDS 40.0%
GTCAAGTGTAGAATCTCCAA+AGG - chr4_3:50582026-50582045 None:intergenic 40.0%
TGACATTACCATCATTGCTC+AGG + chr4_3:50582042-50582061 Msa0645390:CDS 40.0%
AACTACTACCTGAGCAATGA+TGG - chr4_3:50582053-50582072 None:intergenic 40.0%
CAGCAGCTGGTTAACTGATT+TGG + chr4_3:50577613-50577632 Msa0645390:CDS 45.0%
TAGGCTTATGTCCCTTGTGA+CGG - chr4_3:50577775-50577794 None:intergenic 45.0%
TTCCTTGATGCTGATGTAGG+AGG + chr4_3:50577987-50578006 Msa0645390:CDS 45.0%
TCCTTGATGCTGATGTAGGA+GGG + chr4_3:50577988-50578007 Msa0645390:CDS 45.0%
GCGGAGATTATTTGTGGAAG+TGG - chr4_3:50578081-50578100 None:intergenic 45.0%
TTTGGGGGGTTGTCAAAAGA+TGG - chr4_3:50578209-50578228 None:intergenic 45.0%
TTACTAGGGGGTGAATTTGG+GGG - chr4_3:50578224-50578243 None:intergenic 45.0%
GTTACTAGGGGGTGAATTTG+GGG - chr4_3:50578225-50578244 None:intergenic 45.0%
GAGTTACTAGGGGGTGAATT+TGG - chr4_3:50578227-50578246 None:intergenic 45.0%
ATCAGTGTCTCCAACCGAAT+TGG + chr4_3:50578265-50578284 Msa0645390:CDS 45.0%
AGAAACCTCAAAAGGGTCGT+TGG + chr4_3:50578307-50578326 Msa0645390:CDS 45.0%
!!! ACGAGGCCTTTTGCTTTTTG+AGG - chr4_3:50578357-50578376 None:intergenic 45.0%
CTGCAAGAGCAATGAAGGTT+TGG - chr4_3:50578433-50578452 None:intergenic 45.0%
AAGAGCTGCAAGAGCAATGA+AGG - chr4_3:50578438-50578457 None:intergenic 45.0%
!!! AACCACGATGCCGTTTTTTC+CGG + chr4_3:50579350-50579369 Msa0645390:intron 45.0%
AATCACAATTCATGCTGGCC+CGG - chr4_3:50579372-50579391 None:intergenic 45.0%
GGACCAATCACAATTCATGC+TGG - chr4_3:50579377-50579396 None:intergenic 45.0%
! TGATTGGTCCAACAAAGCCT+CGG + chr4_3:50579387-50579406 Msa0645390:intron 45.0%
! AATTTGTCCCGAGGCTTTGT+TGG - chr4_3:50579398-50579417 None:intergenic 45.0%
TTTATGAACCCGAAACACGG+TGG + chr4_3:50579724-50579743 Msa0645390:intron 45.0%
GCAAAGGGGGGTTACATTAA+GGG - chr4_3:50579781-50579800 None:intergenic 45.0%
TGCAAAGGGGGGTTACATTA+AGG - chr4_3:50579782-50579801 None:intergenic 45.0%
TGGGTGGTTACATTAAGGGA+CGG + chr4_3:50580023-50580042 Msa0645390:intron 45.0%
TGGTTACATTAAGGGACGGA+GGG + chr4_3:50580027-50580046 Msa0645390:intron 45.0%
! GGCCGTCCCAATGTATTTTT+AGG + chr4_3:50581025-50581044 Msa0645390:intron 45.0%
ATGTTCACTCGAAGCTCAAG+TGG - chr4_3:50581417-50581436 None:intergenic 45.0%
!! ACATAGTAGGGCTGGTCTAA+GGG - chr4_3:50581545-50581564 None:intergenic 45.0%
!! TACATAGTAGGGCTGGTCTA+AGG - chr4_3:50581546-50581565 None:intergenic 45.0%
ACAATGCTACATAGTAGGGC+TGG - chr4_3:50581553-50581572 None:intergenic 45.0%
!!! TTATATTTTAAAAATATTGA+AGG + chr4_3:50578645-50578664 Msa0645390:intron 5.0%
!!! TAAAAGTAAAATTATTTTTT+TGG + chr4_3:50579504-50579523 Msa0645390:intron 5.0%
!! ATATAATAAAAAAATGAAAA+AGG + chr4_3:50580752-50580771 Msa0645390:intron 5.0%
ACCCTCCTACATCAGCATCA+AGG - chr4_3:50577992-50578011 None:intergenic 50.0%
TACTAGGGGGTGAATTTGGG+GGG - chr4_3:50578223-50578242 None:intergenic 50.0%
TGATCTCTACCATGAGCACG+AGG - chr4_3:50578374-50578393 None:intergenic 50.0%
GGAAAATGCTGGATAACGCG+AGG + chr4_3:50579038-50579057 Msa0645390:intron 50.0%
AAATGCTGGATAACGCGAGG+TGG + chr4_3:50579041-50579060 Msa0645390:intron 50.0%
!!! ACCACGATGCCGTTTTTTCC+GGG + chr4_3:50579351-50579370 Msa0645390:intron 50.0%
TCATGCTGGCCCGGAAAAAA+CGG - chr4_3:50579363-50579382 None:intergenic 50.0%
GGGCCAGCATGAATTGTGAT+TGG + chr4_3:50579371-50579390 Msa0645390:intron 50.0%
! GATTGGTCCAACAAAGCCTC+GGG + chr4_3:50579388-50579407 Msa0645390:intron 50.0%
TTGATAGGCCACCGTGTTTC+GGG - chr4_3:50579735-50579754 None:intergenic 50.0%
! GTTGATAGGCCACCGTGTTT+CGG - chr4_3:50579736-50579755 None:intergenic 50.0%
AAACACGGTGGCCTATCAAC+TGG + chr4_3:50579736-50579755 Msa0645390:intron 50.0%
GGGTTACATTAAGGGACGGA+GGG - chr4_3:50579773-50579792 None:intergenic 50.0%
AGGGGGGTTACATTAAGGGA+CGG - chr4_3:50579777-50579796 None:intergenic 50.0%
GTGGTTACATTAAGGGACGG+AGG + chr4_3:50580026-50580045 Msa0645390:intron 50.0%
!! CATAGTAGGGCTGGTCTAAG+GGG - chr4_3:50581544-50581563 None:intergenic 50.0%
ATCGCTGCATAGGCATGGTT+TGG - chr4_3:50581816-50581835 None:intergenic 50.0%
TCTTCATCGCTGCATAGGCA+TGG - chr4_3:50581821-50581840 None:intergenic 50.0%
!! TCAAGAGCACAAGGGGCTTT+TGG + chr4_3:50581940-50581959 Msa0645390:CDS 50.0%
AGCAAAAGGCCTCGTGCTCA+TGG + chr4_3:50578362-50578381 Msa0645390:CDS 55.0%
GGGGTTACATTAAGGGACGG+AGG - chr4_3:50579774-50579793 None:intergenic 55.0%
GCCTAAAGCCCCTGCTTTAG+TGG + chr4_3:50581515-50581534 Msa0645390:intron 55.0%
GCCACTAAAGCAGGGGCTTT+AGG - chr4_3:50581519-50581538 None:intergenic 55.0%
AAGGGGCTGCCACTAAAGCA+GGG - chr4_3:50581527-50581546 None:intergenic 55.0%
TAAGGGGCTGCCACTAAAGC+AGG - chr4_3:50581528-50581547 None:intergenic 55.0%
GCCCGGAAAAAACGGCATCG+TGG - chr4_3:50579355-50579374 None:intergenic 60.0%
AGGGGCTGCCACTAAAGCAG+GGG - chr4_3:50581526-50581545 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 50577572 50582096 50577572 ID=Msa0645390;Name=Msa0645390
chr4_3 mRNA 50577572 50582096 50577572 ID=Msa0645390-mRNA-1;Parent=Msa0645390;Name=Msa0645390-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|3|0|329
chr4_3 exon 50577572 50577634 50577572 ID=Msa0645390-mRNA-1:exon:12024;Parent=Msa0645390-mRNA-1
chr4_3 exon 50577942 50578475 50577942 ID=Msa0645390-mRNA-1:exon:12025;Parent=Msa0645390-mRNA-1
chr4_3 exon 50581704 50582096 50581704 ID=Msa0645390-mRNA-1:exon:12026;Parent=Msa0645390-mRNA-1
chr4_3 CDS 50577572 50577634 50577572 ID=Msa0645390-mRNA-1:cds;Parent=Msa0645390-mRNA-1
chr4_3 CDS 50577942 50578475 50577942 ID=Msa0645390-mRNA-1:cds;Parent=Msa0645390-mRNA-1
chr4_3 CDS 50581704 50582096 50581704 ID=Msa0645390-mRNA-1:cds;Parent=Msa0645390-mRNA-1
Gene Sequence

>Msa0645390

ATGGAGGAAATCAACAACCCAGCAATGAAAGTATCATCAATCAGCAGCTGGTTAACTGATTTGGAAATGAACGAATACAATATATTTGCTGAGGAATGCAACCTGAATTTCCTTGATGCTGATGTAGGAGGGTTTCTTTCACAAGACATGTCTAATGTATTTCAAGAACAAAACAAACAACAATGTTTAACTCTGGGGTCCACTTCCACAAATAATCTCCGCAAGTCATTCATTCATGAAACAATTGATAATAATGACAAAATCAATGAATCACTTTCACCAAATATTTCTCCATCACCATCTAACTCCTCTTTTCAGTTTCAAATACCATCTTTTGACAACCCCCCAAATTCACCCCCTAGTAACTCAAAAGAGAATGAAACAATATCAGTGTCTCCAACCGAATTGGAAAATATGAATCACTCAACAGAAACCTCAAAAGGGTCGTTGGAAAAAGAAAACATGGAAACAAAAACCTCAAAAAGCAAAAGGCCTCGTGCTCATGGTAGAGATCACATCATGGCTGAGAGAAATCGAAGAGAGAAACTCACCCAAACCTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTTAAAAAGATGGACAAGCTATCTGTACTAGTTGACACTATTAAATACATGAAAGAGCTTAAAAATCGTTTGGAAGTTGTCGAAGAACAAAACAAGAAAGCAAAAAAAAAATCATCGACCAAACCATGCCTATGCAGCGATGAAGATTCTTCATCATGTGATGATAGTGTTGAATGTGTTGTTGGTTCACCATTTCAAGTGGAAGCAAGAGTATTAGGAAAACAAATGTTGATTCGGATACAATGTCAAGAGCACAAGGGGCTTTTGGTTAAAATAATGGTCGAAATTCAAAGATTTCAACTATTTGTTGTCAATAGCAGTGTCTTACCCTTTGGAGATTCTACACTTGACATTACCATCATTGCTCAGGTAGTAGTTACCCATCCTTTAAATTGCCATTAA

Protein sequence

>Msa0645390

MEEINNPAMKVSSISSWLTDLEMNEYNIFAEECNLNFLDADVGGFLSQDMSNVFQEQNKQQCLTLGSTSTNNLRKSFIHETIDNNDKINESLSPNISPSPSNSSFQFQIPSFDNPPNSPPSNSKENETISVSPTELENMNHSTETSKGSLEKENMETKTSKSKRPRAHGRDHIMAERNRREKLTQTFIALAALVPNLKKMDKLSVLVDTIKYMKELKNRLEVVEEQNKKAKKKSSTKPCLCSDEDSSSCDDSVECVVGSPFQVEARVLGKQMLIRIQCQEHKGLLVKIMVEIQRFQLFVVNSSVLPFGDSTLDITIIAQVVVTHPLNCH*