Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591830 | XP_024638721.1 | 78.780 | 377 | 35 | 4 | 1 | 332 | 1 | 377 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591830 | sp|Q0WQX7|RBL1_ARATH | 54.094 | 342 | 114 | 3 | 33 | 331 | 47 | 388 | 4.07e-121 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591830 | A0A396I2V4 | 78.780 | 377 | 35 | 4 | 1 | 332 | 1 | 377 | 0.0 | 565 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0591830 | -0.848611 | 5.489739e-60 | -8.615850e-47 |
| Msa0017120 | Msa0591830 | -0.806728 | 7.144073e-50 | -8.615850e-47 |
| Msa0041540 | Msa0591830 | -0.808917 | 2.446503e-50 | -8.615850e-47 |
| Msa0043680 | Msa0591830 | -0.815129 | 1.082655e-51 | -8.615850e-47 |
| Msa0044240 | Msa0591830 | 0.805430 | 1.339867e-49 | -8.615850e-47 |
| Msa0056040 | Msa0591830 | -0.807140 | 5.845974e-50 | -8.615850e-47 |
| Msa0065390 | Msa0591830 | -0.809999 | 1.433019e-50 | -8.615850e-47 |
| Msa0092660 | Msa0591830 | -0.819054 | 1.420604e-52 | -8.615850e-47 |
| Msa0092730 | Msa0591830 | -0.821672 | 3.564528e-53 | -8.615850e-47 |
| Msa0094420 | Msa0591830 | -0.809497 | 1.837869e-50 | -8.615850e-47 |
| Msa0103780 | Msa0591830 | -0.807727 | 4.388574e-50 | -8.615850e-47 |
| Msa0110710 | Msa0591830 | -0.811500 | 6.787437e-51 | -8.615850e-47 |
| Msa0125800 | Msa0591830 | -0.801928 | 7.144298e-49 | -8.615850e-47 |
| Msa0135980 | Msa0591830 | -0.821121 | 4.777867e-53 | -8.615850e-47 |
| Msa0137600 | Msa0591830 | -0.806044 | 9.959720e-50 | -8.615850e-47 |
| Msa0146470 | Msa0591830 | -0.841609 | 4.283682e-58 | -8.615850e-47 |
| Msa0150210 | Msa0591830 | -0.850426 | 1.711452e-60 | -8.615850e-47 |
| Msa0157020 | Msa0591830 | -0.807936 | 3.961978e-50 | -8.615850e-47 |
| Msa0185390 | Msa0591830 | -0.833108 | 6.444973e-56 | -8.615850e-47 |
| Msa0222070 | Msa0591830 | -0.811208 | 7.853718e-51 | -8.615850e-47 |
| Msa0222120 | Msa0591830 | -0.814104 | 1.825955e-51 | -8.615850e-47 |
| Msa0227020 | Msa0591830 | 0.814589 | 1.426334e-51 | -8.615850e-47 |
| Msa0228340 | Msa0591830 | 0.811996 | 5.294194e-51 | -8.615850e-47 |
| Msa0230550 | Msa0591830 | 0.802437 | 5.613964e-49 | -8.615850e-47 |
| Msa0380060 | Msa0591830 | -0.816070 | 6.681829e-52 | -8.615850e-47 |
| Msa0384110 | Msa0591830 | 0.800032 | 1.742965e-48 | -8.615850e-47 |
| Msa0417630 | Msa0591830 | -0.832279 | 1.035165e-55 | -8.615850e-47 |
| Msa0436450 | Msa0591830 | -0.805384 | 1.369857e-49 | -8.615850e-47 |
| Msa0257130 | Msa0591830 | -0.812065 | 5.114106e-51 | -8.615850e-47 |
| Msa0263620 | Msa0591830 | -0.811152 | 8.078412e-51 | -8.615850e-47 |
| Msa0269270 | Msa0591830 | 0.816185 | 6.300316e-52 | -8.615850e-47 |
| Msa0301180 | Msa0591830 | -0.808602 | 2.857610e-50 | -8.615850e-47 |
| Msa0341460 | Msa0591830 | 0.807876 | 4.079742e-50 | -8.615850e-47 |
| Msa0363940 | Msa0591830 | -0.818247 | 2.165978e-52 | -8.615850e-47 |
| Msa0485280 | Msa0591830 | -0.828569 | 8.358430e-55 | -8.615850e-47 |
| Msa0486570 | Msa0591830 | -0.824089 | 9.748630e-54 | -8.615850e-47 |
| Msa0519200 | Msa0591830 | -0.807134 | 5.863632e-50 | -8.615850e-47 |
| Msa0524090 | Msa0591830 | -0.821248 | 4.466866e-53 | -8.615850e-47 |
| Msa0524120 | Msa0591830 | -0.822435 | 2.372019e-53 | -8.615850e-47 |
| Msa0538570 | Msa0591830 | -0.812575 | 3.957678e-51 | -8.615850e-47 |
| Msa0546740 | Msa0591830 | -0.846195 | 2.530388e-59 | -8.615850e-47 |
| Msa0575990 | Msa0591830 | 0.817692 | 2.889802e-52 | -8.615850e-47 |
| Msa0576100 | Msa0591830 | 0.812084 | 5.065042e-51 | -8.615850e-47 |
| Msa0591830 | Msa0594390 | -0.800448 | 1.434446e-48 | -8.615850e-47 |
| Msa0591830 | Msa0600390 | -0.825651 | 4.173642e-54 | -8.615850e-47 |
| Msa0591830 | Msa0606060 | -0.801438 | 9.005723e-49 | -8.615850e-47 |
| Msa0591830 | Msa0614230 | -0.800824 | 1.202345e-48 | -8.615850e-47 |
| Msa0591830 | Msa0619330 | -0.814451 | 1.530327e-51 | -8.615850e-47 |
| Msa0591830 | Msa0638710 | -0.808815 | 2.572408e-50 | -8.615850e-47 |
| Msa0591830 | Msa0640880 | -0.835418 | 1.697644e-56 | -8.615850e-47 |
| Msa0591830 | Msa0642650 | -0.829439 | 5.143357e-55 | -8.615850e-47 |
| Msa0591830 | Msa0667220 | -0.819352 | 1.215298e-52 | -8.615850e-47 |
| Msa0591830 | Msa0681890 | -0.845782 | 3.276213e-59 | -8.615850e-47 |
| Msa0591830 | Msa0686610 | -0.810345 | 1.207138e-50 | -8.615850e-47 |
| Msa0591830 | Msa0703720 | -0.808207 | 3.469275e-50 | -8.615850e-47 |
| Msa0591830 | Msa0703760 | -0.813017 | 3.166780e-51 | -8.615850e-47 |
| Msa0591830 | Msa0738880 | -0.828102 | 1.083557e-54 | -8.615850e-47 |
| Msa0591830 | Msa0819320 | -0.817463 | 3.255353e-52 | -8.615850e-47 |
| Msa0591830 | Msa0819370 | -0.828265 | 9.895416e-55 | -8.615850e-47 |
| Msa0591830 | Msa0922540 | -0.819571 | 1.082776e-52 | -8.615850e-47 |
| Msa0591830 | Msa0925160 | -0.804269 | 2.342251e-49 | -8.615850e-47 |
| Msa0591830 | Msa0930330 | -0.815558 | 8.694813e-52 | -8.615850e-47 |
| Msa0591830 | Msa0931480 | -0.816507 | 5.336297e-52 | -8.615850e-47 |
| Msa0591830 | Msa0955260 | -0.813305 | 2.737279e-51 | -8.615850e-47 |
| Msa0591830 | Msa0958020 | -0.830240 | 3.282488e-55 | -8.615850e-47 |
| Msa0591830 | Msa0990520 | -0.824341 | 8.506545e-54 | -8.615850e-47 |
| Msa0591830 | Msa0992570 | -0.831523 | 1.590323e-55 | -8.615850e-47 |
| Msa0591830 | Msa0992590 | -0.822955 | 1.795796e-53 | -8.615850e-47 |
| Msa0591830 | Msa0996090 | -0.814381 | 1.585791e-51 | -8.615850e-47 |
| Msa0591830 | Msa1001780 | -0.805408 | 1.354129e-49 | -8.615850e-47 |
| Msa0591830 | Msa1002040 | -0.838599 | 2.612989e-57 | -8.615850e-47 |
| Msa0591830 | Msa1027790 | -0.840144 | 1.037503e-57 | -8.615850e-47 |
| Msa0591830 | Msa1106560 | -0.805476 | 1.310848e-49 | -8.615850e-47 |
| Msa0591830 | Msa1112610 | -0.832951 | 7.051581e-56 | -8.615850e-47 |
| Msa0591830 | Msa1149760 | -0.808221 | 3.445086e-50 | -8.615850e-47 |
| Msa0591830 | Msa1175600 | 0.804270 | 2.341109e-49 | -8.615850e-47 |
| Msa0591830 | Msa1193950 | 0.810160 | 1.323470e-50 | -8.615850e-47 |
| Msa0591830 | Msa1200920 | -0.817888 | 2.610200e-52 | -8.615850e-47 |
| Msa0591830 | Msa1220450 | 0.841283 | 5.218989e-58 | -8.615850e-47 |
| Msa0591830 | Msa1220460 | 0.834215 | 3.409013e-56 | -8.615850e-47 |
| Msa0591830 | Msa1220480 | 0.831980 | 1.227342e-55 | -8.615850e-47 |
| Msa0591830 | Msa1223840 | -0.843342 | 1.486131e-58 | -8.615850e-47 |
| Msa0591830 | Msa1224670 | -0.826304 | 2.919173e-54 | -8.615850e-47 |
| Msa0591830 | Msa1246530 | 0.815068 | 1.117357e-51 | -8.615850e-47 |
| Msa0591830 | Msa1263030 | -0.867849 | 1.010246e-65 | -8.615850e-47 |
| Msa0591830 | Msa1323060 | -0.801365 | 9.318980e-49 | -8.615850e-47 |
| Msa0591830 | Msa1341930 | -0.819636 | 1.046775e-52 | -8.615850e-47 |
| Msa0591830 | Msa1354040 | -0.805008 | 1.642097e-49 | -8.615850e-47 |
| Msa0591830 | Msa1379980 | -0.814360 | 1.603060e-51 | -8.615850e-47 |
| Msa0591830 | Msa1381130 | -0.835888 | 1.290979e-56 | -8.615850e-47 |
| Msa0591830 | Msa1405770 | -0.857081 | 2.080656e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591830 | MtrunA17_Chr4g0009841 | 78.780 | 377 | 35 | 4 | 1 | 332 | 1 | 377 | 0.0 | 565 |
| Msa0591830 | MtrunA17_Chr7g0238701 | 56.484 | 347 | 104 | 4 | 32 | 332 | 18 | 363 | 1.46e-123 | 359 |
| Msa0591830 | MtrunA17_Chr2g0328271 | 51.009 | 347 | 124 | 6 | 32 | 332 | 36 | 382 | 2.25e-107 | 318 |
| Msa0591830 | MtrunA17_Chr6g0472501 | 54.710 | 276 | 84 | 5 | 8 | 248 | 6 | 275 | 1.17e-86 | 263 |
| Msa0591830 | MtrunA17_Chr2g0332941 | 49.259 | 270 | 97 | 5 | 39 | 269 | 30 | 298 | 1.04e-78 | 243 |
| Msa0591830 | MtrunA17_Chr1g0203681 | 48.302 | 265 | 87 | 3 | 37 | 263 | 30 | 282 | 2.36e-70 | 221 |
| Msa0591830 | MtrunA17_Chr3g0115331 | 32.873 | 362 | 189 | 6 | 21 | 331 | 21 | 379 | 1.61e-44 | 156 |
| Msa0591830 | MtrunA17_Chr2g0322601 | 46.000 | 100 | 49 | 2 | 123 | 222 | 20 | 114 | 1.22e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591830 | AT2G29050.1 | 54.094 | 342 | 114 | 3 | 33 | 331 | 47 | 388 | 4.13e-122 | 356 |
| Msa0591830 | AT3G53780.2 | 48.413 | 378 | 130 | 6 | 14 | 331 | 21 | 393 | 4.34e-108 | 321 |
| Msa0591830 | AT2G29050.2 | 55.363 | 289 | 70 | 2 | 33 | 262 | 47 | 335 | 1.47e-104 | 310 |
| Msa0591830 | AT3G53780.3 | 53.000 | 300 | 88 | 4 | 11 | 262 | 18 | 312 | 1.99e-96 | 288 |
| Msa0591830 | AT1G63120.1 | 53.571 | 252 | 77 | 3 | 32 | 248 | 23 | 269 | 7.39e-88 | 266 |
| Msa0591830 | AT1G12750.4 | 46.667 | 270 | 107 | 3 | 29 | 263 | 7 | 274 | 1.24e-82 | 253 |
| Msa0591830 | AT1G12750.7 | 46.667 | 270 | 107 | 3 | 29 | 263 | 7 | 274 | 1.24e-82 | 253 |
| Msa0591830 | AT1G12750.6 | 46.667 | 270 | 107 | 3 | 29 | 263 | 7 | 274 | 1.24e-82 | 253 |
| Msa0591830 | AT1G12750.3 | 46.667 | 270 | 107 | 3 | 29 | 263 | 7 | 274 | 1.24e-82 | 253 |
| Msa0591830 | AT1G12750.1 | 46.667 | 270 | 107 | 3 | 29 | 263 | 7 | 274 | 1.24e-82 | 253 |
| Msa0591830 | AT5G07250.1 | 49.275 | 276 | 93 | 5 | 15 | 248 | 25 | 295 | 1.08e-73 | 231 |
| Msa0591830 | AT3G53780.1 | 45.620 | 274 | 101 | 4 | 101 | 331 | 1 | 269 | 9.99e-73 | 226 |
| Msa0591830 | AT1G52580.1 | 49.421 | 259 | 96 | 4 | 40 | 264 | 31 | 288 | 1.68e-72 | 227 |
| Msa0591830 | AT4G23070.1 | 47.368 | 266 | 105 | 3 | 29 | 262 | 18 | 280 | 1.41e-59 | 194 |
| Msa0591830 | AT1G12750.2 | 47.312 | 186 | 63 | 2 | 29 | 179 | 7 | 192 | 1.03e-54 | 177 |
| Msa0591830 | AT1G12750.5 | 47.541 | 183 | 61 | 2 | 29 | 176 | 7 | 189 | 1.88e-54 | 177 |
| Msa0591830 | AT1G77860.2 | 31.081 | 370 | 200 | 7 | 12 | 332 | 22 | 385 | 1.47e-53 | 180 |
| Msa0591830 | AT1G77860.1 | 38.683 | 243 | 113 | 3 | 12 | 222 | 22 | 260 | 2.25e-49 | 169 |
| Msa0591830 | AT5G07250.2 | 44.390 | 205 | 74 | 3 | 15 | 179 | 25 | 229 | 7.31e-41 | 145 |
Find 91 sgRNAs with CRISPR-Local
Find 395 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGATTATTGGGTTGAATT+TGG | 0.148700 | 4_2:-16709964 | None:intergenic |
| GTTGTTGATATTAGGGTTTC+AGG | 0.176871 | 4_2:+16715568 | Msa0591830:three_prime_UTR |
| TATGATCAGTTGTTGATATT+AGG | 0.190801 | 4_2:+16715560 | Msa0591830:three_prime_UTR |
| GGTGCTTCTGGTGCGCTCTT+TGG | 0.206709 | 4_2:+16713213 | Msa0591830:CDS |
| AGAAATATCAGTGCATATTA+TGG | 0.219150 | 4_2:+16713606 | Msa0591830:CDS |
| CATATTGGAGGCTTTCTTAC+AGG | 0.232404 | 4_2:+16713479 | Msa0591830:CDS |
| AACATTTCTGTCGGTGCTTC+TGG | 0.248422 | 4_2:+16713201 | Msa0591830:CDS |
| GGACTGCTATTTGTCATATC+TGG | 0.252446 | 4_2:+16713138 | Msa0591830:CDS |
| CACTGATATTTCTTGAATTT+AGG | 0.254249 | 4_2:-16713596 | None:intergenic |
| CTTGCGTTCCAACTTCAAAA+TGG | 0.280990 | 4_2:+16714428 | Msa0591830:CDS |
| GTGCTTCTGGTGCGCTCTTT+GGG | 0.288890 | 4_2:+16713214 | Msa0591830:CDS |
| TCCTTGATCATTCTAATTGT+TGG | 0.293394 | 4_2:+16713635 | Msa0591830:CDS |
| ATGATCAGTTGTTGATATTA+GGG | 0.300139 | 4_2:+16715561 | Msa0591830:three_prime_UTR |
| CTTAAGGAAAATCCTCTTCT+TGG | 0.304847 | 4_2:+16710281 | Msa0591830:CDS |
| ATGAGTGTGGGAATTGAAAA+AGG | 0.313715 | 4_2:-16709937 | None:intergenic |
| GTGGACAACTTTGCTCATAT+TGG | 0.341832 | 4_2:+16713464 | Msa0591830:CDS |
| TATCAGAACTCATCACTAAT+TGG | 0.358975 | 4_2:+16713253 | Msa0591830:CDS |
| CCTTGATCATTCTAATTGTT+GGG | 0.370688 | 4_2:+16713636 | Msa0591830:CDS |
| TGATGAACTGGTAGTGAAAC+AGG | 0.382992 | 4_2:-16710089 | None:intergenic |
| GTTGTTCTTGTGCCATGGAA+GGG | 0.390960 | 4_2:-16710022 | None:intergenic |
| CATTCAGCTGGCTGCCAAGC+TGG | 0.392809 | 4_2:-16715406 | None:intergenic |
| GGTTGTTCTTGTGCCATGGA+AGG | 0.396002 | 4_2:-16710023 | None:intergenic |
| ATGAAGGAGTCAAAAGAAGT+TGG | 0.398320 | 4_2:-16709888 | None:intergenic |
| CTATTTGTCATATCTGGATT+CGG | 0.404511 | 4_2:+16713144 | Msa0591830:CDS |
| AAAGCTGAGTACACAATTGC+TGG | 0.409324 | 4_2:-16715493 | None:intergenic |
| AACAATATGCTGCCTCTGTA+TGG | 0.412864 | 4_2:-16714456 | None:intergenic |
| GAAATATCAGTGCATATTAT+GGG | 0.420709 | 4_2:+16713607 | Msa0591830:CDS |
| TTGGAACGCAAGACAGATAA+TGG | 0.421009 | 4_2:-16714417 | None:intergenic |
| CTACCATTGTTGTGATGAAC+TGG | 0.422231 | 4_2:-16710101 | None:intergenic |
| ATTGTTGTCAATCTCGCAAT+CGG | 0.426698 | 4_2:+16713428 | Msa0591830:CDS |
| TTTCTTACAGGATTTCTTCT+CGG | 0.427048 | 4_2:+16713491 | Msa0591830:CDS |
| GTGGTGGAGTGGATCTGTAA+TGG | 0.433065 | 4_2:-16710047 | None:intergenic |
| TGAAGGAGTCAAAAGAAGTT+GGG | 0.434438 | 4_2:-16709887 | None:intergenic |
| AACCGTATTGTTGTTGGTGG+TGG | 0.441868 | 4_2:-16710063 | None:intergenic |
| GGTGCGCTCTTTGGGTTGCT+AGG | 0.443750 | 4_2:+16713222 | Msa0591830:CDS |
| AAGGGGAGATGAAGTTAGAA+AGG | 0.446782 | 4_2:-16709918 | None:intergenic |
| TTGAGCATGTTACATTCAGC+TGG | 0.449466 | 4_2:-16715418 | None:intergenic |
| AATTTAGGCTTAGCACGTGT+TGG | 0.464408 | 4_2:-16713581 | None:intergenic |
| TTGTTCTTGTGCCATGGAAG+GGG | 0.471766 | 4_2:-16710021 | None:intergenic |
| GACAACTTTGCTCATATTGG+AGG | 0.477044 | 4_2:+16713467 | Msa0591830:CDS |
| GGGTGGGAATAGAGAAAAGG+GGG | 0.480359 | 4_2:-16709988 | None:intergenic |
| TGATACGACCTCAGTTTGGA+TGG | 0.480933 | 4_2:+16713525 | Msa0591830:CDS |
| ATACAAGAAACAGAATTCTT+CGG | 0.482230 | 4_2:-16710224 | None:intergenic |
| GTTGCTTAGGCTACAGAAGA+TGG | 0.487379 | 4_2:+16712227 | Msa0591830:intron |
| GAATTTGGTTTGATGAGTGT+GGG | 0.492051 | 4_2:-16709949 | None:intergenic |
| AGGGGAGATGAAGTTAGAAA+GGG | 0.499506 | 4_2:-16709917 | None:intergenic |
| CCCAACAATTAGAATGATCA+AGG | 0.501839 | 4_2:-16713636 | None:intergenic |
| ATGCAAATGAGCACTGCTCT+TGG | 0.503314 | 4_2:+16714392 | Msa0591830:CDS |
| TGAATTTGGTTTGATGAGTG+TGG | 0.505732 | 4_2:-16709950 | None:intergenic |
| TGCTGGATCTGAGAACTAGT+TGG | 0.509296 | 4_2:-16715476 | None:intergenic |
| TGGTGGTTGTTCTTGTGCCA+TGG | 0.516952 | 4_2:-16710027 | None:intergenic |
| TTAATGTAGTCTATACCTGT+TGG | 0.521154 | 4_2:+16715623 | Msa0591830:three_prime_UTR |
| ATGCACCTTGTTATCATACA+TGG | 0.523566 | 4_2:-16713277 | None:intergenic |
| TTGTTGTCAATCTCGCAATC+GGG | 0.524856 | 4_2:+16713429 | Msa0591830:CDS |
| ATGTGGACAGAGTGGTTCAC+AGG | 0.525902 | 4_2:+16712259 | Msa0591830:CDS |
| AAAACTCACGTCAAAGAAGA+AGG | 0.530671 | 4_2:-16710305 | None:intergenic |
| GTGGAGTGGATCTGTAATGG+TGG | 0.530730 | 4_2:-16710044 | None:intergenic |
| TGTTCTTGTGCCATGGAAGG+GGG | 0.530858 | 4_2:-16710020 | None:intergenic |
| GGGGTGGGAATAGAGAAAAG+GGG | 0.534599 | 4_2:-16709989 | None:intergenic |
| CAGAATAAACAAATCTGCTA+AGG | 0.536624 | 4_2:-16715697 | None:intergenic |
| TTGCTTAGGCTACAGAAGAT+GGG | 0.539148 | 4_2:+16712228 | Msa0591830:intron |
| TTAGAAAGGGAAGAAGATGA+AGG | 0.547534 | 4_2:-16709904 | None:intergenic |
| CTCCACCACCAACAACAATA+CGG | 0.552269 | 4_2:+16710061 | Msa0591830:CDS |
| ACTCTACACGAGCATATCGT+TGG | 0.555362 | 4_2:-16713553 | None:intergenic |
| GTGAACCGTATTGTTGTTGG+TGG | 0.556656 | 4_2:-16710066 | None:intergenic |
| GATACGACCTCAGTTTGGAT+GGG | 0.558496 | 4_2:+16713526 | Msa0591830:CDS |
| AGGGTGAACCGTATTGTTGT+TGG | 0.561183 | 4_2:-16710069 | None:intergenic |
| ATTCAGTCAAACATTTCTGT+CGG | 0.569262 | 4_2:+16713192 | Msa0591830:CDS |
| GGCTCTTGATGTGGACAGAG+TGG | 0.574158 | 4_2:+16712251 | Msa0591830:CDS |
| TGCTTAGGCTACAGAAGATG+GGG | 0.585088 | 4_2:+16712229 | Msa0591830:intron |
| AAAATGCAGTCAAACCAGCT+TGG | 0.586288 | 4_2:+16715392 | Msa0591830:intron |
| AAAGAAGAAGGACCAAGAAG+AGG | 0.595674 | 4_2:-16710293 | None:intergenic |
| GGTGGGAATAGAGAAAAGGG+GGG | 0.596636 | 4_2:-16709987 | None:intergenic |
| TGGTTCACAGGCACCAAGGT+TGG | 0.597747 | 4_2:+16712271 | Msa0591830:CDS |
| TGAGCAAAGTTGTCCACGTG+TGG | 0.600519 | 4_2:-16713458 | None:intergenic |
| TATTGTTGTTGGTGGTGGAG+TGG | 0.604045 | 4_2:-16710058 | None:intergenic |
| TTGGTCCATGTATGATAACA+AGG | 0.606083 | 4_2:+16713272 | Msa0591830:CDS |
| AAGTGATGAGACGCCAACCT+TGG | 0.609470 | 4_2:-16712284 | None:intergenic |
| AATGTAACATGCTCAAGCAA+TGG | 0.621258 | 4_2:+16715425 | Msa0591830:CDS |
| CGAAAAGGGATATTGACCGT+TGG | 0.631024 | 4_2:+16715532 | Msa0591830:three_prime_UTR |
| ATTCTGTTTCTTGTATTGCG+AGG | 0.632340 | 4_2:+16710231 | Msa0591830:CDS |
| AACTGATCATAATCGTCCAA+CGG | 0.650253 | 4_2:-16715548 | None:intergenic |
| TTTGTCATATCTGGATTCGG+AGG | 0.654649 | 4_2:+16713147 | Msa0591830:CDS |
| TGGTTTACCCATCCAAACTG+AGG | 0.662759 | 4_2:-16713533 | None:intergenic |
| CTACCAGTTCATCACAACAA+TGG | 0.677665 | 4_2:+16710098 | Msa0591830:CDS |
| AGAGTGGTTCACAGGCACCA+AGG | 0.684956 | 4_2:+16712267 | Msa0591830:CDS |
| AAAATGGAACTGCCATACAG+AGG | 0.686757 | 4_2:+16714444 | Msa0591830:CDS |
| CAATTAGAATGATCAAGGAG+AGG | 0.698764 | 4_2:-16713631 | None:intergenic |
| AATCGGGATTCTTCCACACG+TGG | 0.721100 | 4_2:+16713445 | Msa0591830:CDS |
| GCTTAGGCTACAGAAGATGG+GGG | 0.722579 | 4_2:+16712230 | Msa0591830:intron |
| GATGAACTGGTAGTGAAACA+GGG | 0.762833 | 4_2:-16710088 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAGTAATAATTTAAAAAAA+TGG | - | chr4_2:16714237-16714256 | None:intergenic | 10.0% |
| !! | ACAAAACAAAAAAGAAAATT+AGG | - | chr4_2:16710341-16710360 | None:intergenic | 15.0% |
| !! | TTAGTAAATTATTAGTGAAT+TGG | + | chr4_2:16710403-16710422 | Msa0591830:intron | 15.0% |
| !! | TAGTAAATTATTAGTGAATT+GGG | + | chr4_2:16710404-16710423 | Msa0591830:intron | 15.0% |
| !! | TTCAATATAATTATATGTGT+CGG | + | chr4_2:16710589-16710608 | Msa0591830:intron | 15.0% |
| !!! | AACAAATTTAAGTTCTATTA+TGG | + | chr4_2:16712700-16712719 | Msa0591830:intron | 15.0% |
| !! | TTATAAATAAATTCGTTCAT+AGG | - | chr4_2:16714532-16714551 | None:intergenic | 15.0% |
| !! | TTCTATAAAATAACATCAAA+CGG | - | chr4_2:16715224-16715243 | None:intergenic | 15.0% |
| !!! | ATATTTTTTCTTTTCTGTTT+TGG | + | chr4_2:16715337-16715356 | Msa0591830:intron | 15.0% |
| !! | TGCAAAAATAAAATAAAATC+TGG | - | chr4_2:16715662-16715681 | None:intergenic | 15.0% |
| !!! | TGTTTTTGTGTTTTTATGAT+AGG | + | chr4_2:16710358-16710377 | Msa0591830:intron | 20.0% |
| !!! | ATTCATTTGGAATGAATTTT+AGG | + | chr4_2:16710495-16710514 | Msa0591830:intron | 20.0% |
| !!! | ATCATTTTGTATTGTAGTTT+TGG | + | chr4_2:16711329-16711348 | Msa0591830:intron | 20.0% |
| !! | TTTGTAATAAATAGTGTATC+AGG | - | chr4_2:16711700-16711719 | None:intergenic | 20.0% |
| !!! | TACAAAGTATTGTTAAGTAT+AGG | + | chr4_2:16711714-16711733 | Msa0591830:intron | 20.0% |
| !!! | TTTTTTTCAAGGATTATAAG+TGG | + | chr4_2:16712082-16712101 | Msa0591830:intron | 20.0% |
| !! | TCAAATTGATTGTTAATAAC+TGG | + | chr4_2:16712193-16712212 | Msa0591830:intron | 20.0% |
| !! | CAAAATTTGGTATACTAATA+GGG | - | chr4_2:16712476-16712495 | None:intergenic | 20.0% |
| !!! | TAAATTTGAGTTTTGCTTTT+TGG | + | chr4_2:16712507-16712526 | Msa0591830:intron | 20.0% |
| !! | ATACAGAATAAAAGAATACT+TGG | - | chr4_2:16712766-16712785 | None:intergenic | 20.0% |
| !! | AAAAATTGTCCTATTATCAT+TGG | + | chr4_2:16712880-16712899 | Msa0591830:intron | 20.0% |
| !!! | CTGTTTTAATCTTAATTTAG+AGG | - | chr4_2:16712957-16712976 | None:intergenic | 20.0% |
| !! | TGAGTAATTCTGTTTATTAT+TGG | + | chr4_2:16713000-16713019 | Msa0591830:intron | 20.0% |
| !!! | AAACCAAAAGGAATAAATTT+TGG | - | chr4_2:16713045-16713064 | None:intergenic | 20.0% |
| !!! | AACAAAATTTTGTTTATCAG+TGG | - | chr4_2:16713367-16713386 | None:intergenic | 20.0% |
| !! | AAATCTTCTGTTACATTTAT+TGG | + | chr4_2:16713913-16713932 | Msa0591830:intron | 20.0% |
| !! | ACAAGATAAAAAAATAACAC+TGG | - | chr4_2:16714111-16714130 | None:intergenic | 20.0% |
| !! | TTAACTTATCTAAAAATCAC+AGG | + | chr4_2:16714332-16714351 | Msa0591830:intron | 20.0% |
| !!! | ATAATATTTTTCAGATAAGG+AGG | - | chr4_2:16714504-16714523 | None:intergenic | 20.0% |
| !!! | CTGATAATATTTTTCAGATA+AGG | - | chr4_2:16714507-16714526 | None:intergenic | 20.0% |
| !! | AAAGTAACAATACTTGAAAA+GGG | - | chr4_2:16714556-16714575 | None:intergenic | 20.0% |
| !! | TAAAGTAACAATACTTGAAA+AGG | - | chr4_2:16714557-16714576 | None:intergenic | 20.0% |
| !! | AGTTACAAGAAAATATTCAT+TGG | - | chr4_2:16714926-16714945 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTTTCATAAGCAT+GGG | - | chr4_2:16715184-16715203 | None:intergenic | 20.0% |
| !!! | AAGTTTTTTTTTCATAAGCA+TGG | - | chr4_2:16715185-16715204 | None:intergenic | 20.0% |
| !! | AAGTGAAGCATTACAAAAAA+TGG | + | chr4_2:16710126-16710145 | Msa0591830:CDS | 25.0% |
| ! | ATTACAAAAAATGGTTTCCT+TGG | + | chr4_2:16710135-16710154 | Msa0591830:CDS | 25.0% |
| ! | ATGTTAGCAACAACAAAAAA+CGG | - | chr4_2:16710167-16710186 | None:intergenic | 25.0% |
| ! | ATACAAGAAACAGAATTCTT+CGG | - | chr4_2:16710227-16710246 | None:intergenic | 25.0% |
| ! | AAATTATTAGTGAATTGGGT+TGG | + | chr4_2:16710408-16710427 | Msa0591830:intron | 25.0% |
| ! | AATTATTAGTGAATTGGGTT+GGG | + | chr4_2:16710409-16710428 | Msa0591830:intron | 25.0% |
| ! | TCTCAAATTATCATTATCAG+TGG | - | chr4_2:16710558-16710577 | None:intergenic | 25.0% |
| ! | GTGTTTATCAAGACAAAATA+AGG | + | chr4_2:16710996-16711015 | Msa0591830:intron | 25.0% |
| ! | TTTATCAAGACAAAATAAGG+AGG | + | chr4_2:16710999-16711018 | Msa0591830:intron | 25.0% |
| ! | AATAGTGTGAATTCAAACAA+CGG | - | chr4_2:16711047-16711066 | None:intergenic | 25.0% |
| ! | ATGAATGATGATTATTGCAT+TGG | + | chr4_2:16711092-16711111 | Msa0591830:intron | 25.0% |
| ! | TGAATGATGATTATTGCATT+GGG | + | chr4_2:16711093-16711112 | Msa0591830:intron | 25.0% |
| ! | AAAATTAATGCTTTCCATAG+CGG | - | chr4_2:16711817-16711836 | None:intergenic | 25.0% |
| !! | ATTTTATTGCATGTAACTAC+TGG | + | chr4_2:16711832-16711851 | Msa0591830:intron | 25.0% |
| !!! | AATATTTTAGACTACAGAAC+AGG | - | chr4_2:16711892-16711911 | None:intergenic | 25.0% |
| !! | GTTCTGTAGTCTAAAATATT+AGG | + | chr4_2:16711892-16711911 | Msa0591830:intron | 25.0% |
| ! | AAAATATTAGGAGGACTAAT+TGG | + | chr4_2:16711904-16711923 | Msa0591830:intron | 25.0% |
| ! | AACAAATTAAGGACTAATTC+TGG | + | chr4_2:16711976-16711995 | Msa0591830:intron | 25.0% |
| ! | TCTGGTATAGATCAATATTA+TGG | + | chr4_2:16711994-16712013 | Msa0591830:intron | 25.0% |
| !!! | GATTTTGTCACTAGTTTTTT+TGG | - | chr4_2:16712029-16712048 | None:intergenic | 25.0% |
| ! | TAGTGACAAAATCTAATTTG+AGG | + | chr4_2:16712036-16712055 | Msa0591830:intron | 25.0% |
| ! | TCATCTATTAGCAAATATGT+TGG | + | chr4_2:16712332-16712351 | Msa0591830:intron | 25.0% |
| ! | CATCTATTAGCAAATATGTT+GGG | + | chr4_2:16712333-16712352 | Msa0591830:intron | 25.0% |
| !! | GCATTCTTTTTATTGGAATT+CGG | + | chr4_2:16712355-16712374 | Msa0591830:intron | 25.0% |
| ! | CCAAAATTTGGTATACTAAT+AGG | - | chr4_2:16712477-16712496 | None:intergenic | 25.0% |
| !! | CCTATTAGTATACCAAATTT+TGG | + | chr4_2:16712474-16712493 | Msa0591830:intron | 25.0% |
| ! | TATAGACTAAGACCAAAATT+TGG | - | chr4_2:16712489-16712508 | None:intergenic | 25.0% |
| !! | ATTAATTCTCCAAGCAATTT+TGG | - | chr4_2:16712670-16712689 | None:intergenic | 25.0% |
| ! | AAATTGCTTGGAGAATTAAT+AGG | + | chr4_2:16712670-16712689 | Msa0591830:intron | 25.0% |
| ! | AATTGCTTGGAGAATTAATA+GGG | + | chr4_2:16712671-16712690 | Msa0591830:intron | 25.0% |
| ! | GTAGATAAATAGAACTAACA+AGG | + | chr4_2:16712830-16712849 | Msa0591830:intron | 25.0% |
| ! | TAACAAGGAAACAAGTAATT+AGG | + | chr4_2:16712845-16712864 | Msa0591830:intron | 25.0% |
| !! | ACACCAAAATTTATTCCTTT+TGG | + | chr4_2:16713039-16713058 | Msa0591830:intron | 25.0% |
| ! | CACTGATATTTCTTGAATTT+AGG | - | chr4_2:16713599-16713618 | None:intergenic | 25.0% |
| ! | AGAAATATCAGTGCATATTA+TGG | + | chr4_2:16713606-16713625 | Msa0591830:CDS | 25.0% |
| ! | GAAATATCAGTGCATATTAT+GGG | + | chr4_2:16713607-16713626 | Msa0591830:CDS | 25.0% |
| !! | TTTTAGATCTAGTGTATGTA+AGG | + | chr4_2:16713685-16713704 | Msa0591830:intron | 25.0% |
| ! | TTTAGATCTAGTGTATGTAA+GGG | + | chr4_2:16713686-16713705 | Msa0591830:intron | 25.0% |
| !! | AATGTAACAGAAGATTTTGA+TGG | - | chr4_2:16713910-16713929 | None:intergenic | 25.0% |
| ! | ATATTCCTCATTTAACACTT+AGG | + | chr4_2:16714590-16714609 | Msa0591830:intron | 25.0% |
| ! | TATTCCTCATTTAACACTTA+GGG | + | chr4_2:16714591-16714610 | Msa0591830:intron | 25.0% |
| ! | ATGTACCAAATATCTTTGAT+GGG | - | chr4_2:16714696-16714715 | None:intergenic | 25.0% |
| ! | TATGTACCAAATATCTTTGA+TGG | - | chr4_2:16714697-16714716 | None:intergenic | 25.0% |
| ! | AAATTTGTAAAAACAGTCCT+GGG | - | chr4_2:16714729-16714748 | None:intergenic | 25.0% |
| ! | AAAATTTGTAAAAACAGTCC+TGG | - | chr4_2:16714730-16714749 | None:intergenic | 25.0% |
| !!! | AAATTTTAGTTGACAGAAAG+AGG | + | chr4_2:16714743-16714762 | Msa0591830:intron | 25.0% |
| ! | TGTAATGCTTCTCATTAAAT+AGG | + | chr4_2:16715035-16715054 | Msa0591830:intron | 25.0% |
| !!! | GTTTTTTTTTCATAAGCATG+GGG | - | chr4_2:16715183-16715202 | None:intergenic | 25.0% |
| !! | TAATTGAGTTTTTGACGAAA+AGG | + | chr4_2:16715517-16715536 | Msa0591830:exon | 25.0% |
| !! | AATTGAGTTTTTGACGAAAA+GGG | + | chr4_2:16715518-16715537 | Msa0591830:exon | 25.0% |
| ! | TATGATCAGTTGTTGATATT+AGG | + | chr4_2:16715560-16715579 | Msa0591830:three_prime_UTR | 25.0% |
| ! | ATGATCAGTTGTTGATATTA+GGG | + | chr4_2:16715561-16715580 | Msa0591830:three_prime_UTR | 25.0% |
| !! | TGTGATTATTGGGTTGAATT+TGG | - | chr4_2:16709967-16709986 | None:intergenic | 30.0% |
| TTTGTAATGTCGATATCGAT+AGG | + | chr4_2:16710464-16710483 | Msa0591830:intron | 30.0% | |
| ! | ATAGGTTGAACACATTCATT+TGG | + | chr4_2:16710482-16710501 | Msa0591830:intron | 30.0% |
| !! | GGATTATAGTCTTTGAAACA+TGG | + | chr4_2:16710718-16710737 | Msa0591830:intron | 30.0% |
| !! | TTATAGTCTTTGAAACATGG+TGG | + | chr4_2:16710721-16710740 | Msa0591830:intron | 30.0% |
| GAATGATGATTATTGCATTG+GGG | + | chr4_2:16711094-16711113 | Msa0591830:intron | 30.0% | |
| AATGATGATTATTGCATTGG+GGG | + | chr4_2:16711095-16711114 | Msa0591830:intron | 30.0% | |
| !! | ATTAGATAGAAAAGGTGTCT+TGG | + | chr4_2:16711175-16711194 | Msa0591830:intron | 30.0% |
| ! | TTTACACTAATTGGTCTCTT+AGG | - | chr4_2:16711259-16711278 | None:intergenic | 30.0% |
| CAACTACTCTTTACACTAAT+TGG | - | chr4_2:16711268-16711287 | None:intergenic | 30.0% | |
| TTCTATGTTCAGTCCAAATT+AGG | + | chr4_2:16711529-16711548 | Msa0591830:intron | 30.0% | |
| ! | ACTTCATACCTATTTTACTG+CGG | - | chr4_2:16711658-16711677 | None:intergenic | 30.0% |
| AATAAATAGTGTATCAGGTC+AGG | - | chr4_2:16711695-16711714 | None:intergenic | 30.0% | |
| TTGTTAAGTATAGGCTATAG+CGG | + | chr4_2:16711723-16711742 | Msa0591830:intron | 30.0% | |
| TTTGTTCAAACTGCAGAAAT+AGG | - | chr4_2:16711778-16711797 | None:intergenic | 30.0% | |
| ! | CTGTAGTCTAAAATATTAGG+AGG | + | chr4_2:16711895-16711914 | Msa0591830:intron | 30.0% |
| !! | GCTTGTTGTATCTATAATGT+TGG | - | chr4_2:16711938-16711957 | None:intergenic | 30.0% |
| ATACAACAAGCAAAACTACA+AGG | + | chr4_2:16711947-16711966 | Msa0591830:intron | 30.0% | |
| CAAGGAACAACAACAAATTA+AGG | + | chr4_2:16711965-16711984 | Msa0591830:intron | 30.0% | |
| ACAAAATCTAATTTGAGGAC+AGG | + | chr4_2:16712041-16712060 | Msa0591830:intron | 30.0% | |
| ! | ATGTTGGGCATTCTTTTTAT+TGG | + | chr4_2:16712348-16712367 | Msa0591830:intron | 30.0% |
| GTTAGCGTTTAAGAAATCTA+TGG | + | chr4_2:16712632-16712651 | Msa0591830:intron | 30.0% | |
| AGAAATCTATGGATGATAAC+AGG | + | chr4_2:16712643-16712662 | Msa0591830:intron | 30.0% | |
| !!! | GGACAATTTTTTCAGAATAC+AGG | - | chr4_2:16712871-16712890 | None:intergenic | 30.0% |
| AACCTTTCACCAATGATAAT+AGG | - | chr4_2:16712892-16712911 | None:intergenic | 30.0% | |
| TCTGTCAAAGATAAACCAAA+AGG | - | chr4_2:16713057-16713076 | None:intergenic | 30.0% | |
| !!! | TTTTGGTTTATCTTTGACAG+AGG | + | chr4_2:16713056-16713075 | Msa0591830:intron | 30.0% |
| CTATTTGTCATATCTGGATT+CGG | + | chr4_2:16713144-16713163 | Msa0591830:CDS | 30.0% | |
| ATTCAGTCAAACATTTCTGT+CGG | + | chr4_2:16713192-16713211 | Msa0591830:CDS | 30.0% | |
| TATCAGAACTCATCACTAAT+TGG | + | chr4_2:16713253-16713272 | Msa0591830:CDS | 30.0% | |
| GTCAAGATTATGCACTTAAA+AGG | + | chr4_2:16713338-16713357 | Msa0591830:intron | 30.0% | |
| TTTCTTACAGGATTTCTTCT+CGG | + | chr4_2:16713491-16713510 | Msa0591830:CDS | 30.0% | |
| TCCTTGATCATTCTAATTGT+TGG | + | chr4_2:16713635-16713654 | Msa0591830:CDS | 30.0% | |
| CCTTGATCATTCTAATTGTT+GGG | + | chr4_2:16713636-16713655 | Msa0591830:CDS | 30.0% | |
| TTAGATCTAGTGTATGTAAG+GGG | + | chr4_2:16713687-16713706 | Msa0591830:intron | 30.0% | |
| ! | AATCTAAAACTTGCAACTGT+TGG | - | chr4_2:16713810-16713829 | None:intergenic | 30.0% |
| GAAACCAAGTTATTTGCTTT+AGG | + | chr4_2:16713871-16713890 | Msa0591830:intron | 30.0% | |
| ATACTATATAGCAGACATGA+AGG | + | chr4_2:16714050-16714069 | Msa0591830:intron | 30.0% | |
| TACTATATAGCAGACATGAA+GGG | + | chr4_2:16714051-16714070 | Msa0591830:intron | 30.0% | |
| TTCTTCAAAAAACCACAAGT+GGG | - | chr4_2:16714181-16714200 | None:intergenic | 30.0% | |
| TTCCAGGTAATTATAGTGTT+AGG | - | chr4_2:16714658-16714677 | None:intergenic | 30.0% | |
| ACTATAATTACCTGGAAAAG+TGG | + | chr4_2:16714661-16714680 | Msa0591830:intron | 30.0% | |
| CTATTCCCATCAAAGATATT+TGG | + | chr4_2:16714688-16714707 | Msa0591830:intron | 30.0% | |
| AAACTTAACTTCTCTTTCCA+TGG | + | chr4_2:16714813-16714832 | Msa0591830:intron | 30.0% | |
| AACTTAACTTCTCTTTCCAT+GGG | + | chr4_2:16714814-16714833 | Msa0591830:intron | 30.0% | |
| GTAAACATTCTCATCATGTT+TGG | - | chr4_2:16714954-16714973 | None:intergenic | 30.0% | |
| AATAACCTGAAAACAGCTTA+TGG | - | chr4_2:16715150-16715169 | None:intergenic | 30.0% | |
| ATTAAGCTTCTTATCCATTC+AGG | + | chr4_2:16715296-16715315 | Msa0591830:intron | 30.0% | |
| !!! | TTTTCTTTTCTGTTTTGGTG+TGG | + | chr4_2:16715342-16715361 | Msa0591830:intron | 30.0% |
| TTAATGTAGTCTATACCTGT+TGG | + | chr4_2:16715623-16715642 | Msa0591830:three_prime_UTR | 30.0% | |
| CAGAATAAACAAATCTGCTA+AGG | - | chr4_2:16715700-16715719 | None:intergenic | 30.0% | |
| ! | TTTGACTGATACCTATTTTG+TGG | + | chr4_2:16715730-16715749 | Msa0591830:three_prime_UTR | 30.0% |
| TGAAGGAGTCAAAAGAAGTT+GGG | - | chr4_2:16709890-16709909 | None:intergenic | 35.0% | |
| ATGAAGGAGTCAAAAGAAGT+TGG | - | chr4_2:16709891-16709910 | None:intergenic | 35.0% | |
| TTAGAAAGGGAAGAAGATGA+AGG | - | chr4_2:16709907-16709926 | None:intergenic | 35.0% | |
| TGAGTGTGGGAATTGAAAAA+GGG | - | chr4_2:16709939-16709958 | None:intergenic | 35.0% | |
| ATGAGTGTGGGAATTGAAAA+AGG | - | chr4_2:16709940-16709959 | None:intergenic | 35.0% | |
| !! | GAATTTGGTTTGATGAGTGT+GGG | - | chr4_2:16709952-16709971 | None:intergenic | 35.0% |
| !! | TGAATTTGGTTTGATGAGTG+TGG | - | chr4_2:16709953-16709972 | None:intergenic | 35.0% |
| ACAAAAAACGGTAACAACCA+AGG | - | chr4_2:16710155-16710174 | None:intergenic | 35.0% | |
| ! | ATTCTGTTTCTTGTATTGCG+AGG | + | chr4_2:16710231-16710250 | Msa0591830:CDS | 35.0% |
| ! | AGAAGAGGATTTTCCTTAAG+AGG | - | chr4_2:16710281-16710300 | None:intergenic | 35.0% |
| CTTAAGGAAAATCCTCTTCT+TGG | + | chr4_2:16710281-16710300 | Msa0591830:CDS | 35.0% | |
| AAAACTCACGTCAAAGAAGA+AGG | - | chr4_2:16710308-16710327 | None:intergenic | 35.0% | |
| !! | TTGGGTTGGGTTAATAAAAG+AGG | + | chr4_2:16710422-16710441 | Msa0591830:intron | 35.0% |
| ! | GAATTTTAGGCTATGAAGCA+CGG | + | chr4_2:16710508-16710527 | Msa0591830:intron | 35.0% |
| GATCTCTAGACAACGAATAA+GGG | + | chr4_2:16710696-16710715 | Msa0591830:intron | 35.0% | |
| ATCTCTAGACAACGAATAAG+GGG | + | chr4_2:16710697-16710716 | Msa0591830:intron | 35.0% | |
| ! | AGTAATGATGATGACTGGAT+GGG | + | chr4_2:16710786-16710805 | Msa0591830:intron | 35.0% |
| GAGAGGGAATTAGATAGAAA+AGG | + | chr4_2:16711167-16711186 | Msa0591830:intron | 35.0% | |
| GTCTTGGTGAAGTAGATTAA+AGG | + | chr4_2:16711191-16711210 | Msa0591830:intron | 35.0% | |
| GTGAAGTAGATTAAAGGTGA+TGG | + | chr4_2:16711197-16711216 | Msa0591830:intron | 35.0% | |
| ! | AAGTAGATTAAAGGTGATGG+TGG | + | chr4_2:16711200-16711219 | Msa0591830:intron | 35.0% |
| !!! | TAGTTTTGGTCGATTACTTG+TGG | + | chr4_2:16711343-16711362 | Msa0591830:intron | 35.0% |
| TCCATTCATTGAGCATCTTT+AGG | + | chr4_2:16711385-16711404 | Msa0591830:intron | 35.0% | |
| ACCTAAAGATGCTCAATGAA+TGG | - | chr4_2:16711389-16711408 | None:intergenic | 35.0% | |
| TGACTGTTGATCATGATCAA+CGG | + | chr4_2:16711426-16711445 | Msa0591830:intron | 35.0% | |
| GATTTGTATGCGCTTCATAT+AGG | + | chr4_2:16711459-16711478 | Msa0591830:intron | 35.0% | |
| ! | ACTTGAGATTGACTCACTAT+GGG | - | chr4_2:16711624-16711643 | None:intergenic | 35.0% |
| ! | AACTTGAGATTGACTCACTA+TGG | - | chr4_2:16711625-16711644 | None:intergenic | 35.0% |
| ! | CTTCATACCTATTTTACTGC+GGG | - | chr4_2:16711657-16711676 | None:intergenic | 35.0% |
| GTGGAAAAGATGCATATTTG+TGG | + | chr4_2:16712101-16712120 | Msa0591830:intron | 35.0% | |
| !! | CTGCATTAGTCTTTAGTAGT+AGG | + | chr4_2:16712412-16712431 | Msa0591830:intron | 35.0% |
| !! | TGCTCACTTTTCACAAACAA+GGG | - | chr4_2:16712533-16712552 | None:intergenic | 35.0% |
| !! | TTGCTCACTTTTCACAAACA+AGG | - | chr4_2:16712534-16712553 | None:intergenic | 35.0% |
| TTGTGAAAAGTGAGCAATTC+TGG | + | chr4_2:16712537-16712556 | Msa0591830:intron | 35.0% | |
| !! | AGTTGGTGGATCTATCATAA+TGG | - | chr4_2:16712569-16712588 | None:intergenic | 35.0% |
| TAGGAATCCATTTGAAAGGT+CGG | - | chr4_2:16712593-16712612 | None:intergenic | 35.0% | |
| GAGTTAGGAATCCATTTGAA+AGG | - | chr4_2:16712597-16712616 | None:intergenic | 35.0% | |
| ! | CAAATGGATTCCTAACTCAA+AGG | + | chr4_2:16712599-16712618 | Msa0591830:intron | 35.0% |
| ATAACAGGACCAAAATTGCT+TGG | + | chr4_2:16712658-16712677 | Msa0591830:intron | 35.0% | |
| TTATGGATAACATGCTGTAG+TGG | + | chr4_2:16712717-16712736 | Msa0591830:intron | 35.0% | |
| GTCCTATTATCATTGGTGAA+AGG | + | chr4_2:16712887-16712906 | Msa0591830:intron | 35.0% | |
| ATTGGTGAAAGGTTAAGAGA+TGG | + | chr4_2:16712898-16712917 | Msa0591830:intron | 35.0% | |
| GAAAGGTTAAGAGATGGTAT+TGG | + | chr4_2:16712904-16712923 | Msa0591830:intron | 35.0% | |
| ! | AGTTTTGCTACAGTGCTTAT+TGG | + | chr4_2:16713117-16713136 | Msa0591830:intron | 35.0% |
| TTGGTCCATGTATGATAACA+AGG | + | chr4_2:16713272-16713291 | Msa0591830:CDS | 35.0% | |
| ! | ATGCACCTTGTTATCATACA+TGG | - | chr4_2:16713280-16713299 | None:intergenic | 35.0% |
| ATTGTTGTCAATCTCGCAAT+CGG | + | chr4_2:16713428-16713447 | Msa0591830:CDS | 35.0% | |
| ! | TTTTTGATACGACCTCAGTT+TGG | + | chr4_2:16713521-16713540 | Msa0591830:CDS | 35.0% |
| CAATTAGAATGATCAAGGAG+AGG | - | chr4_2:16713634-16713653 | None:intergenic | 35.0% | |
| CCCAACAATTAGAATGATCA+AGG | - | chr4_2:16713639-16713658 | None:intergenic | 35.0% | |
| ! | TTTCATGCTACTTGTGAACA+GGG | - | chr4_2:16713731-16713750 | None:intergenic | 35.0% |
| TCTGCCTAAAGCAAATAACT+TGG | - | chr4_2:16713878-16713897 | None:intergenic | 35.0% | |
| CATGAAGGGATAAAACAAAG+AGG | + | chr4_2:16714065-16714084 | Msa0591830:intron | 35.0% | |
| CTTCTTCAAAAAACCACAAG+TGG | - | chr4_2:16714182-16714201 | None:intergenic | 35.0% | |
| TCTAAAAATCACAGGCTTTC+TGG | + | chr4_2:16714340-16714359 | Msa0591830:intron | 35.0% | |
| GTCCTAACACTATAATTACC+TGG | + | chr4_2:16714653-16714672 | Msa0591830:intron | 35.0% | |
| !! | GAATAGTTTTCCACTTTTCC+AGG | - | chr4_2:16714674-16714693 | None:intergenic | 35.0% |
| TGACAGAAAGAGGTAGAATT+AGG | + | chr4_2:16714753-16714772 | Msa0591830:intron | 35.0% | |
| TGAGAATGTTTACATTCCCA+AGG | + | chr4_2:16714961-16714980 | Msa0591830:intron | 35.0% | |
| ATTGATGAGAATGTGACCTT+GGG | - | chr4_2:16714980-16714999 | None:intergenic | 35.0% | |
| TATTGATGAGAATGTGACCT+TGG | - | chr4_2:16714981-16715000 | None:intergenic | 35.0% | |
| GCACATAATATAGTCCTGAA+TGG | - | chr4_2:16715313-16715332 | None:intergenic | 35.0% | |
| AATGTAACATGCTCAAGCAA+TGG | + | chr4_2:16715425-16715444 | Msa0591830:CDS | 35.0% | |
| AACTGATCATAATCGTCCAA+CGG | - | chr4_2:16715551-16715570 | None:intergenic | 35.0% | |
| GTTGTTGATATTAGGGTTTC+AGG | + | chr4_2:16715568-16715587 | Msa0591830:three_prime_UTR | 35.0% | |
| !!! | CTATACCTGTTGGTTTTTTC+AGG | + | chr4_2:16715633-16715652 | Msa0591830:three_prime_UTR | 35.0% |
| ! | TTTTGATCCTGCCACAAAAT+AGG | - | chr4_2:16715744-16715763 | None:intergenic | 35.0% |
| AGGGGAGATGAAGTTAGAAA+GGG | - | chr4_2:16709920-16709939 | None:intergenic | 40.0% | |
| AAGGGGAGATGAAGTTAGAA+AGG | - | chr4_2:16709921-16709940 | None:intergenic | 40.0% | |
| GAGTGTGGGAATTGAAAAAG+GGG | - | chr4_2:16709938-16709957 | None:intergenic | 40.0% | |
| ! | AAAAGGGGGGTGTGATTATT+GGG | - | chr4_2:16709977-16709996 | None:intergenic | 40.0% |
| ! | GATGAACTGGTAGTGAAACA+GGG | - | chr4_2:16710091-16710110 | None:intergenic | 40.0% |
| ! | TGATGAACTGGTAGTGAAAC+AGG | - | chr4_2:16710092-16710111 | None:intergenic | 40.0% |
| CTACCAGTTCATCACAACAA+TGG | + | chr4_2:16710098-16710117 | Msa0591830:CDS | 40.0% | |
| CTACCATTGTTGTGATGAAC+TGG | - | chr4_2:16710104-16710123 | None:intergenic | 40.0% | |
| !! | TTTCGCTTTTCAGCCTCTTA+AGG | + | chr4_2:16710265-16710284 | Msa0591830:CDS | 40.0% |
| AAAGAAGAAGGACCAAGAAG+AGG | - | chr4_2:16710296-16710315 | None:intergenic | 40.0% | |
| TACCTGAAACCTATGAAGCA+CGG | - | chr4_2:16710663-16710682 | None:intergenic | 40.0% | |
| CGATCTCTAGACAACGAATA+AGG | + | chr4_2:16710695-16710714 | Msa0591830:intron | 40.0% | |
| ! | TGCTGAGTAATGATGATGAC+TGG | + | chr4_2:16710781-16710800 | Msa0591830:intron | 40.0% |
| ! | GAGTAATGATGATGACTGGA+TGG | + | chr4_2:16710785-16710804 | Msa0591830:intron | 40.0% |
| ! | GTAATGATGATGACTGGATG+GGG | + | chr4_2:16710787-16710806 | Msa0591830:intron | 40.0% |
| AGAGAGAGAGAGAGTTAGAA+AGG | + | chr4_2:16710844-16710863 | Msa0591830:intron | 40.0% | |
| !! | AGAGAGTTAGAAAGGTGTCT+TGG | + | chr4_2:16710852-16710871 | Msa0591830:intron | 40.0% |
| GTCTTGGTGAAGTAGATGAA+AGG | + | chr4_2:16710868-16710887 | Msa0591830:intron | 40.0% | |
| AAGTAGATGAAAGGTGACGA+TGG | + | chr4_2:16710877-16710896 | Msa0591830:intron | 40.0% | |
| AAAACTCTCACACAACTGCA+AGG | - | chr4_2:16710971-16710990 | None:intergenic | 40.0% | |
| ! | AGTTGTGTGAGAGTTTTTCG+CGG | + | chr4_2:16710974-16710993 | Msa0591830:intron | 40.0% |
| AAGATGCTCAATGAATGGAG+TGG | - | chr4_2:16711384-16711403 | None:intergenic | 40.0% | |
| TCATTGAGCATCTTTAGGTG+CGG | + | chr4_2:16711390-16711409 | Msa0591830:intron | 40.0% | |
| GACTGTTGATCATGATCAAC+GGG | + | chr4_2:16711427-16711446 | Msa0591830:intron | 40.0% | |
| GTGGGAATTCAAGCCTAATT+TGG | - | chr4_2:16711545-16711564 | None:intergenic | 40.0% | |
| ACTCGAACCTGACTCATATT+GGG | - | chr4_2:16711591-16711610 | None:intergenic | 40.0% | |
| AACTCGAACCTGACTCATAT+TGG | - | chr4_2:16711592-16711611 | None:intergenic | 40.0% | |
| AGTCAATCTCAAGTTTGACC+AGG | + | chr4_2:16711630-16711649 | Msa0591830:intron | 40.0% | |
| AGACTACAGAACAGGAACTA+AGG | - | chr4_2:16711884-16711903 | None:intergenic | 40.0% | |
| !! | GGTGATTTGCTATGTTGCTT+AGG | + | chr4_2:16712214-16712233 | Msa0591830:intron | 40.0% |
| TTGCTTAGGCTACAGAAGAT+GGG | + | chr4_2:16712228-16712247 | Msa0591830:intron | 40.0% | |
| ATCACTTGTATGTGGCTACA+TGG | + | chr4_2:16712300-16712319 | Msa0591830:intron | 40.0% | |
| ! | ATTCGGCTTGAGCAAGAATT+TGG | + | chr4_2:16712372-16712391 | Msa0591830:intron | 40.0% |
| ! | TTCGGCTTGAGCAAGAATTT+GGG | + | chr4_2:16712373-16712392 | Msa0591830:intron | 40.0% |
| ! | CTTGAGCAAGAATTTGGGTT+TGG | + | chr4_2:16712378-16712397 | Msa0591830:intron | 40.0% |
| GGTGGATCTATCATAATGGT+AGG | - | chr4_2:16712565-16712584 | None:intergenic | 40.0% | |
| TGGATTCCTAACTCAAAGGT+TGG | + | chr4_2:16712603-16712622 | Msa0591830:intron | 40.0% | |
| ! | AAGTCACCAACCTTTGAGTT+AGG | - | chr4_2:16712612-16712631 | None:intergenic | 40.0% |
| ! | GGACTGCTATTTGTCATATC+TGG | + | chr4_2:16713138-16713157 | Msa0591830:CDS | 40.0% |
| TTTGTCATATCTGGATTCGG+AGG | + | chr4_2:16713147-16713166 | Msa0591830:CDS | 40.0% | |
| TTGTTGTCAATCTCGCAATC+GGG | + | chr4_2:16713429-16713448 | Msa0591830:CDS | 40.0% | |
| GTGGACAACTTTGCTCATAT+TGG | + | chr4_2:16713464-16713483 | Msa0591830:CDS | 40.0% | |
| GACAACTTTGCTCATATTGG+AGG | + | chr4_2:16713467-16713486 | Msa0591830:CDS | 40.0% | |
| CATATTGGAGGCTTTCTTAC+AGG | + | chr4_2:16713479-16713498 | Msa0591830:CDS | 40.0% | |
| AATTTAGGCTTAGCACGTGT+TGG | - | chr4_2:16713584-16713603 | None:intergenic | 40.0% | |
| ! | GTTTCATGCTACTTGTGAAC+AGG | - | chr4_2:16713732-16713751 | None:intergenic | 40.0% |
| TTCCAGTTTCGTTGAGTAGT+TGG | + | chr4_2:16713759-16713778 | Msa0591830:intron | 40.0% | |
| TCCAGTTTCGTTGAGTAGTT+GGG | + | chr4_2:16713760-16713779 | Msa0591830:intron | 40.0% | |
| CTAAAACTTGCAACTGTTGG+AGG | - | chr4_2:16713807-16713826 | None:intergenic | 40.0% | |
| GAAGAAGAATCTGACACATG+TGG | + | chr4_2:16714195-16714214 | Msa0591830:intron | 40.0% | |
| CAGCTATAAAGCACATACAC+TGG | - | chr4_2:16714288-16714307 | None:intergenic | 40.0% | |
| AAAAATCACAGGCTTTCTGG+TGG | + | chr4_2:16714343-16714362 | Msa0591830:intron | 40.0% | |
| TTGGAACGCAAGACAGATAA+TGG | - | chr4_2:16714420-16714439 | None:intergenic | 40.0% | |
| CTTGCGTTCCAACTTCAAAA+TGG | + | chr4_2:16714428-16714447 | Msa0591830:CDS | 40.0% | |
| !!! | TGGCAGTTCCATTTTGAAGT+TGG | - | chr4_2:16714439-16714458 | None:intergenic | 40.0% |
| AAAATGGAACTGCCATACAG+AGG | + | chr4_2:16714444-16714463 | Msa0591830:CDS | 40.0% | |
| AACAATATGCTGCCTCTGTA+TGG | - | chr4_2:16714459-16714478 | None:intergenic | 40.0% | |
| TACAGAGGCAGCATATTGTT+TGG | + | chr4_2:16714459-16714478 | Msa0591830:intron | 40.0% | |
| TGCTCCCTAAGTGTTAAATG+AGG | - | chr4_2:16714598-16714617 | None:intergenic | 40.0% | |
| GGTACATACTTATCATTCCC+AGG | + | chr4_2:16714709-16714728 | Msa0591830:intron | 40.0% | |
| GTTGGAATCTTACATTCCCA+TGG | - | chr4_2:16714833-16714852 | None:intergenic | 40.0% | |
| AAGATTCCAACTCCTTGACA+TGG | + | chr4_2:16714842-16714861 | Msa0591830:intron | 40.0% | |
| AGATTCCAACTCCTTGACAT+GGG | + | chr4_2:16714843-16714862 | Msa0591830:intron | 40.0% | |
| !! | CACTTTTGATTCCCATGTCA+AGG | - | chr4_2:16714857-16714876 | None:intergenic | 40.0% |
| !! | CATGTCCATAAGCTGTTTTC+AGG | + | chr4_2:16715142-16715161 | Msa0591830:intron | 40.0% |
| !!! | GCTGGTTTGACTGCATTTTA+TGG | - | chr4_2:16715391-16715410 | None:intergenic | 40.0% |
| AAAATGCAGTCAAACCAGCT+TGG | + | chr4_2:16715392-16715411 | Msa0591830:intron | 40.0% | |
| TTGAGCATGTTACATTCAGC+TGG | - | chr4_2:16715421-16715440 | None:intergenic | 40.0% | |
| AAAGCTGAGTACACAATTGC+TGG | - | chr4_2:16715496-16715515 | None:intergenic | 40.0% | |
| GGTATCCTGAAAAAACCAAC+AGG | - | chr4_2:16715641-16715660 | None:intergenic | 40.0% | |
| ! | ACTGATACCTATTTTGTGGC+AGG | + | chr4_2:16715734-16715753 | Msa0591830:three_prime_UTR | 40.0% |
| ! | GAAAAGGGGGGTGTGATTAT+TGG | - | chr4_2:16709978-16709997 | None:intergenic | 45.0% |
| TTGTTCTTGTGCCATGGAAG+GGG | - | chr4_2:16710024-16710043 | None:intergenic | 45.0% | |
| GTTGTTCTTGTGCCATGGAA+GGG | - | chr4_2:16710025-16710044 | None:intergenic | 45.0% | |
| !! | TATTGTTGTTGGTGGTGGAG+TGG | - | chr4_2:16710061-16710080 | None:intergenic | 45.0% |
| CTCCACCACCAACAACAATA+CGG | + | chr4_2:16710061-16710080 | Msa0591830:CDS | 45.0% | |
| ! | AACCGTATTGTTGTTGGTGG+TGG | - | chr4_2:16710066-16710085 | None:intergenic | 45.0% |
| ! | GTGAACCGTATTGTTGTTGG+TGG | - | chr4_2:16710069-16710088 | None:intergenic | 45.0% |
| AGGGTGAACCGTATTGTTGT+TGG | - | chr4_2:16710072-16710091 | None:intergenic | 45.0% | |
| TATGAAGCACGGACACTCAT+CGG | - | chr4_2:16710652-16710671 | None:intergenic | 45.0% | |
| TGTTGGAATCCTTGCATTGC+AGG | - | chr4_2:16710919-16710938 | None:intergenic | 45.0% | |
| TGCAAGGATTCCAACACTCA+CGG | + | chr4_2:16710923-16710942 | Msa0591830:intron | 45.0% | |
| !! | GGAGGTTAGTCTCTGAAACA+TGG | + | chr4_2:16711017-16711036 | Msa0591830:intron | 45.0% |
| !! | GGTTAGTCTCTGAAACATGG+TGG | + | chr4_2:16711020-16711039 | Msa0591830:intron | 45.0% |
| TTAGGTGTCAGAATCCTTGC+AGG | - | chr4_2:16711241-16711260 | None:intergenic | 45.0% | |
| ! | ATCATGATCAACGGGCTTGT+TGG | + | chr4_2:16711435-16711454 | Msa0591830:intron | 45.0% |
| GCGCTTCATATAGGCTAACA+CGG | + | chr4_2:16711468-16711487 | Msa0591830:intron | 45.0% | |
| TTTGAACTGCGCTCTAGTGT+TGG | + | chr4_2:16711504-16711523 | Msa0591830:intron | 45.0% | |
| TTGAACTGCGCTCTAGTGTT+GGG | + | chr4_2:16711505-16711524 | Msa0591830:intron | 45.0% | |
| ATATTGGGTCAGACTGGGTT+GGG | - | chr4_2:16711576-16711595 | None:intergenic | 45.0% | |
| GACTCATATTGGGTCAGACT+GGG | - | chr4_2:16711581-16711600 | None:intergenic | 45.0% | |
| TGACTCATATTGGGTCAGAC+TGG | - | chr4_2:16711582-16711601 | None:intergenic | 45.0% | |
| AGTCTGACCCAATATGAGTC+AGG | + | chr4_2:16711581-16711600 | Msa0591830:intron | 45.0% | |
| ! | GATTGACTCACTATGGGACA+TGG | - | chr4_2:16711618-16711637 | None:intergenic | 45.0% |
| GTTGCTTAGGCTACAGAAGA+TGG | + | chr4_2:16712227-16712246 | Msa0591830:intron | 45.0% | |
| TGCTTAGGCTACAGAAGATG+GGG | + | chr4_2:16712229-16712248 | Msa0591830:intron | 45.0% | |
| ACTTGTATGTGGCTACATGG+TGG | + | chr4_2:16712303-16712322 | Msa0591830:intron | 45.0% | |
| ! | AACATTTCTGTCGGTGCTTC+TGG | + | chr4_2:16713201-16713220 | Msa0591830:CDS | 45.0% |
| TGATACGACCTCAGTTTGGA+TGG | + | chr4_2:16713525-16713544 | Msa0591830:CDS | 45.0% | |
| GATACGACCTCAGTTTGGAT+GGG | + | chr4_2:16713526-16713545 | Msa0591830:CDS | 45.0% | |
| TGGTTTACCCATCCAAACTG+AGG | - | chr4_2:16713536-16713555 | None:intergenic | 45.0% | |
| ACTCTACACGAGCATATCGT+TGG | - | chr4_2:16713556-16713575 | None:intergenic | 45.0% | |
| CACAAGTAGCATGAAACCTG+AGG | + | chr4_2:16713735-16713754 | Msa0591830:intron | 45.0% | |
| TCAACGAAACTGGAAACCTC+AGG | - | chr4_2:16713754-16713773 | None:intergenic | 45.0% | |
| CCAGTTTCGTTGAGTAGTTG+GGG | + | chr4_2:16713761-16713780 | Msa0591830:intron | 45.0% | |
| TGAGTAGTTGGGGTAGATTG+CGG | + | chr4_2:16713771-16713790 | Msa0591830:intron | 45.0% | |
| ACCAACACAAATCCCACTTG+TGG | + | chr4_2:16714166-16714185 | Msa0591830:intron | 45.0% | |
| ACCACAAGTGGGATTTGTGT+TGG | - | chr4_2:16714170-16714189 | None:intergenic | 45.0% | |
| CATTTGCATCAACACCCTTG+AGG | - | chr4_2:16714381-16714400 | None:intergenic | 45.0% | |
| ! | ATGCAAATGAGCACTGCTCT+TGG | + | chr4_2:16714392-16714411 | Msa0591830:CDS | 45.0% |
| !! | CTTAGGGAGCATTTGTCTCA+AGG | + | chr4_2:16714607-16714626 | Msa0591830:intron | 45.0% |
| TGATTCCCATGTCAAGGAGT+TGG | - | chr4_2:16714851-16714870 | None:intergenic | 45.0% | |
| TGCTGGATCTGAGAACTAGT+TGG | - | chr4_2:16715479-16715498 | None:intergenic | 45.0% | |
| CGAAAAGGGATATTGACCGT+TGG | + | chr4_2:16715532-16715551 | Msa0591830:three_prime_UTR | 45.0% | |
| !!! | ATTTTTTTTTTTTTTTTTCA+AGG | + | chr4_2:16712071-16712090 | Msa0591830:intron | 5.0% |
| !!! | GAAAAAATATTTTAAATTTA+TGG | + | chr4_2:16712126-16712145 | Msa0591830:intron | 5.0% |
| GGTGGGAATAGAGAAAAGGG+GGG | - | chr4_2:16709990-16710009 | None:intergenic | 50.0% | |
| GGGTGGGAATAGAGAAAAGG+GGG | - | chr4_2:16709991-16710010 | None:intergenic | 50.0% | |
| GGGGTGGGAATAGAGAAAAG+GGG | - | chr4_2:16709992-16710011 | None:intergenic | 50.0% | |
| GGGGGTGGGAATAGAGAAAA+GGG | - | chr4_2:16709993-16710012 | None:intergenic | 50.0% | |
| TGGGGGTGGGAATAGAGAAA+AGG | - | chr4_2:16709994-16710013 | None:intergenic | 50.0% | |
| TGTTCTTGTGCCATGGAAGG+GGG | - | chr4_2:16710023-16710042 | None:intergenic | 50.0% | |
| GGTTGTTCTTGTGCCATGGA+AGG | - | chr4_2:16710026-16710045 | None:intergenic | 50.0% | |
| TGGTGGTTGTTCTTGTGCCA+TGG | - | chr4_2:16710030-16710049 | None:intergenic | 50.0% | |
| GTGGAGTGGATCTGTAATGG+TGG | - | chr4_2:16710047-16710066 | None:intergenic | 50.0% | |
| ! | GTGGTGGAGTGGATCTGTAA+TGG | - | chr4_2:16710050-16710069 | None:intergenic | 50.0% |
| GATTCAGCATGTCCTGGTGT+CGG | - | chr4_2:16710630-16710649 | None:intergenic | 50.0% | |
| TCATCGGATTCAGCATGTCC+TGG | - | chr4_2:16710636-16710655 | None:intergenic | 50.0% | |
| GATGAGTGTCCGTGCTTCAT+AGG | + | chr4_2:16710651-16710670 | Msa0591830:intron | 50.0% | |
| GTCCGTGCTTCATAGGTTTC+AGG | + | chr4_2:16710658-16710677 | Msa0591830:intron | 50.0% | |
| GCAAGGATTCCAACACTCAC+GGG | + | chr4_2:16710924-16710943 | Msa0591830:intron | 50.0% | |
| ACTAATTGGCCCGTGAGTGT+TGG | - | chr4_2:16710936-16710955 | None:intergenic | 50.0% | |
| AACACTCACGGGCCAATTAG+TGG | + | chr4_2:16710935-16710954 | Msa0591830:intron | 50.0% | |
| GGTTCCGGGTTTCCACTAAT+TGG | - | chr4_2:16710950-16710969 | None:intergenic | 50.0% | |
| TCACACAACTGCAAGGTTCC+GGG | - | chr4_2:16710964-16710983 | None:intergenic | 50.0% | |
| CTCACACAACTGCAAGGTTC+CGG | - | chr4_2:16710965-16710984 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr4_2:16710818-16710837 | Msa0591830:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | + | chr4_2:16710817-16710836 | Msa0591830:intron | 50.0% | |
| CATATTGGGTCAGACTGGGT+TGG | - | chr4_2:16711577-16711596 | None:intergenic | 50.0% | |
| ACCAGGTCCCGCAGTAAAAT+AGG | + | chr4_2:16711647-16711666 | Msa0591830:intron | 50.0% | |
| ! | ACCTATTTTACTGCGGGACC+TGG | - | chr4_2:16711651-16711670 | None:intergenic | 50.0% |
| !! | GCTATTTCTGCGATCCGCTA+TGG | + | chr4_2:16711800-16711819 | Msa0591830:intron | 50.0% |
| GCTTAGGCTACAGAAGATGG+GGG | + | chr4_2:16712230-16712249 | Msa0591830:intron | 50.0% | |
| ATGTGGACAGAGTGGTTCAC+AGG | + | chr4_2:16712259-16712278 | Msa0591830:CDS | 50.0% | |
| AAGTGATGAGACGCCAACCT+TGG | - | chr4_2:16712287-16712306 | None:intergenic | 50.0% | |
| GGCGTCTCATCACTTGTATG+TGG | + | chr4_2:16712292-16712311 | Msa0591830:intron | 50.0% | |
| TTTGAAAGGTCGGCAGTTGG+TGG | - | chr4_2:16712583-16712602 | None:intergenic | 50.0% | |
| CCATTTGAAAGGTCGGCAGT+TGG | - | chr4_2:16712586-16712605 | None:intergenic | 50.0% | |
| CCAACTGCCGACCTTTCAAA+TGG | + | chr4_2:16712583-16712602 | Msa0591830:intron | 50.0% | |
| AATCGGGATTCTTCCACACG+TGG | + | chr4_2:16713445-16713464 | Msa0591830:CDS | 50.0% | |
| TGAGCAAAGTTGTCCACGTG+TGG | - | chr4_2:16713461-16713480 | None:intergenic | 50.0% | |
| CCCCAACTACTCAACGAAAC+TGG | - | chr4_2:16713764-16713783 | None:intergenic | 50.0% | |
| !! | TGGACTTGTTGCACTCCTCA+AGG | + | chr4_2:16714363-16714382 | Msa0591830:intron | 50.0% |
| !! | GGACTTGTTGCACTCCTCAA+GGG | + | chr4_2:16714364-16714383 | Msa0591830:intron | 50.0% |
| TGATGACTGGATGGGGAGAG+AGG | + | chr4_2:16710794-16710813 | Msa0591830:intron | 55.0% | |
| GATGACTGGATGGGGAGAGA+GGG | + | chr4_2:16710795-16710814 | Msa0591830:intron | 55.0% | |
| GTGACGATGGAGAACGACGT+GGG | + | chr4_2:16710890-16710909 | Msa0591830:intron | 55.0% | |
| TGACGATGGAGAACGACGTG+GGG | + | chr4_2:16710891-16710910 | Msa0591830:intron | 55.0% | |
| CGGGCCAATTAGTGGAAACC+CGG | + | chr4_2:16710943-16710962 | Msa0591830:intron | 55.0% | |
| GAACGTCGAGGATACCTGCA+AGG | + | chr4_2:16711224-16711243 | Msa0591830:intron | 55.0% | |
| GAGCATCTTTAGGTGCGGTG+TGG | + | chr4_2:16711395-16711414 | Msa0591830:intron | 55.0% | |
| GGCTTGAATTCCCACCAGAG+AGG | + | chr4_2:16711550-16711569 | Msa0591830:intron | 55.0% | |
| GAAGATGGGGGCTCTTGATG+TGG | + | chr4_2:16712242-16712261 | Msa0591830:CDS | 55.0% | |
| GGCTCTTGATGTGGACAGAG+TGG | + | chr4_2:16712251-16712270 | Msa0591830:CDS | 55.0% | |
| AGAGTGGTTCACAGGCACCA+AGG | + | chr4_2:16712267-16712286 | Msa0591830:CDS | 55.0% | |
| TGGTTCACAGGCACCAAGGT+TGG | + | chr4_2:16712271-16712290 | Msa0591830:CDS | 55.0% | |
| GTGCTTCTGGTGCGCTCTTT+GGG | + | chr4_2:16713214-16713233 | Msa0591830:CDS | 55.0% | |
| TTGTGCCATGGAAGGGGGTG+GGG | - | chr4_2:16710018-16710037 | None:intergenic | 60.0% | |
| CTTGTGCCATGGAAGGGGGT+GGG | - | chr4_2:16710019-16710038 | None:intergenic | 60.0% | |
| TCTTGTGCCATGGAAGGGGG+TGG | - | chr4_2:16710020-16710039 | None:intergenic | 60.0% | |
| !! | GGTGTCGACGTGTCAGTGTC+TGG | - | chr4_2:16710537-16710556 | None:intergenic | 60.0% |
| CACGACACATGTCCGACACC+AGG | + | chr4_2:16710615-16710634 | Msa0591830:intron | 60.0% | |
| GGTGACGATGGAGAACGACG+TGG | + | chr4_2:16710889-16710908 | Msa0591830:intron | 60.0% | |
| ! | CGTGGGGTACCTGCAATGCA+AGG | + | chr4_2:16710907-16710926 | Msa0591830:intron | 60.0% |
| !! | GGTGATGGTGGAGAACGTCG+AGG | + | chr4_2:16711212-16711231 | Msa0591830:intron | 60.0% |
| GGTGCTTCTGGTGCGCTCTT+TGG | + | chr4_2:16713213-16713232 | Msa0591830:CDS | 60.0% | |
| !! | GGTGCGCTCTTTGGGTTGCT+AGG | + | chr4_2:16713222-16713241 | Msa0591830:CDS | 60.0% |
| CATTCAGCTGGCTGCCAAGC+TGG | - | chr4_2:16715409-16715428 | None:intergenic | 60.0% | |
| TGTGCCATGGAAGGGGGTGG+GGG | - | chr4_2:16710017-16710036 | None:intergenic | 65.0% | |
| ! | CTGGGTTGGGCCTCTCTGGT+GGG | - | chr4_2:16711563-16711582 | None:intergenic | 65.0% |
| ! | ACTGGGTTGGGCCTCTCTGG+TGG | - | chr4_2:16711564-16711583 | None:intergenic | 65.0% |
| ! | CAGACTGGGTTGGGCCTCTC+TGG | - | chr4_2:16711567-16711586 | None:intergenic | 65.0% |
| ATGGAAGGGGGTGGGGGTGG+GGG | - | chr4_2:16710011-16710030 | None:intergenic | 70.0% | |
| CATGGAAGGGGGTGGGGGTG+GGG | - | chr4_2:16710012-16710031 | None:intergenic | 70.0% | |
| CCATGGAAGGGGGTGGGGGT+GGG | - | chr4_2:16710013-16710032 | None:intergenic | 70.0% | |
| AAGGGGGTGGGGGTGGGGGT+GGG | - | chr4_2:16710007-16710026 | None:intergenic | 75.0% | |
| CCCACCCCCACCCCCTTCCA+TGG | + | chr4_2:16710010-16710029 | Msa0591830:exon | 75.0% | |
| GCCATGGAAGGGGGTGGGGG+TGG | - | chr4_2:16710014-16710033 | None:intergenic | 75.0% | |
| ! | GAAGGGGGTGGGGGTGGGGG+TGG | - | chr4_2:16710008-16710027 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 16709881 | 16715804 | 16709881 | ID=Msa0591830;Name=Msa0591830 |
| chr4_2 | mRNA | 16709881 | 16715804 | 16709881 | ID=Msa0591830-mRNA-1;Parent=Msa0591830;Name=Msa0591830-mRNA-1;_AED=0.11;_eAED=0.17;_QI=148|0.4|0.66|1|0.8|0.83|6|281|332 |
| chr4_2 | exon | 16709881 | 16710318 | 16709881 | ID=Msa0591830-mRNA-1:exon:4831;Parent=Msa0591830-mRNA-1 |
| chr4_2 | exon | 16712236 | 16712306 | 16712236 | ID=Msa0591830-mRNA-1:exon:4832;Parent=Msa0591830-mRNA-1 |
| chr4_2 | exon | 16713130 | 16713293 | 16713130 | ID=Msa0591830-mRNA-1:exon:4833;Parent=Msa0591830-mRNA-1 |
| chr4_2 | exon | 16713398 | 16713657 | 16713398 | ID=Msa0591830-mRNA-1:exon:4834;Parent=Msa0591830-mRNA-1 |
| chr4_2 | exon | 16714385 | 16714475 | 16714385 | ID=Msa0591830-mRNA-1:exon:4835;Parent=Msa0591830-mRNA-1 |
| chr4_2 | exon | 16715401 | 16715804 | 16715401 | ID=Msa0591830-mRNA-1:exon:4836;Parent=Msa0591830-mRNA-1 |
| chr4_2 | five_prime_UTR | 16709881 | 16710028 | 16709881 | ID=Msa0591830-mRNA-1:five_prime_utr;Parent=Msa0591830-mRNA-1 |
| chr4_2 | CDS | 16710029 | 16710318 | 16710029 | ID=Msa0591830-mRNA-1:cds;Parent=Msa0591830-mRNA-1 |
| chr4_2 | CDS | 16712236 | 16712306 | 16712236 | ID=Msa0591830-mRNA-1:cds;Parent=Msa0591830-mRNA-1 |
| chr4_2 | CDS | 16713130 | 16713293 | 16713130 | ID=Msa0591830-mRNA-1:cds;Parent=Msa0591830-mRNA-1 |
| chr4_2 | CDS | 16713398 | 16713657 | 16713398 | ID=Msa0591830-mRNA-1:cds;Parent=Msa0591830-mRNA-1 |
| chr4_2 | CDS | 16714385 | 16714475 | 16714385 | ID=Msa0591830-mRNA-1:cds;Parent=Msa0591830-mRNA-1 |
| chr4_2 | CDS | 16715401 | 16715523 | 16715401 | ID=Msa0591830-mRNA-1:cds;Parent=Msa0591830-mRNA-1 |
| chr4_2 | three_prime_UTR | 16715524 | 16715804 | 16715524 | ID=Msa0591830-mRNA-1:three_prime_utr;Parent=Msa0591830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
