Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999430 | XP_013453094.1 | 88.352 | 352 | 33 | 4 | 1 | 351 | 1 | 345 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999430 | sp|Q9LV52|HSFC1_ARATH | 59.906 | 212 | 59 | 3 | 8 | 215 | 14 | 203 | 9.66e-80 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999430 | A0A072UBW9 | 88.352 | 352 | 33 | 4 | 1 | 351 | 1 | 345 | 0.0 | 577 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0999430 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa0999430 | 0.800038 | 1.738662e-48 | -8.615850e-47 |
| Msa0023000 | Msa0999430 | 0.817053 | 4.025008e-52 | -8.615850e-47 |
| Msa0044000 | Msa0999430 | 0.804322 | 2.284172e-49 | -8.615850e-47 |
| Msa0052400 | Msa0999430 | 0.812076 | 5.085643e-51 | -8.615850e-47 |
| Msa0058300 | Msa0999430 | 0.812965 | 3.251037e-51 | -8.615850e-47 |
| Msa0065950 | Msa0999430 | 0.817897 | 2.597654e-52 | -8.615850e-47 |
| Msa0090570 | Msa0999430 | 0.816384 | 5.686709e-52 | -8.615850e-47 |
| Msa0115270 | Msa0999430 | 0.836796 | 7.585648e-57 | -8.615850e-47 |
| Msa0115390 | Msa0999430 | 0.812021 | 5.227395e-51 | -8.615850e-47 |
| Msa0610430 | Msa0999430 | 0.807107 | 5.939960e-50 | -8.615850e-47 |
| Msa0615490 | Msa0999430 | 0.815969 | 7.038136e-52 | -8.615850e-47 |
| Msa0616240 | Msa0999430 | 0.802104 | 6.573907e-49 | -8.615850e-47 |
| Msa0641670 | Msa0999430 | 0.808670 | 2.762751e-50 | -8.615850e-47 |
| Msa0663920 | Msa0999430 | 0.806139 | 9.509620e-50 | -8.615850e-47 |
| Msa0675410 | Msa0999430 | 0.802137 | 6.471523e-49 | -8.615850e-47 |
| Msa0688960 | Msa0999430 | 0.809860 | 1.535766e-50 | -8.615850e-47 |
| Msa0692830 | Msa0999430 | 0.802430 | 5.632097e-49 | -8.615850e-47 |
| Msa0692950 | Msa0999430 | 0.815394 | 9.453249e-52 | -8.615850e-47 |
| Msa0698540 | Msa0999430 | 0.814698 | 1.349281e-51 | -8.615850e-47 |
| Msa0699570 | Msa0999430 | 0.800087 | 1.698833e-48 | -8.615850e-47 |
| Msa0737600 | Msa0999430 | 0.813571 | 2.392476e-51 | -8.615850e-47 |
| Msa0743720 | Msa0999430 | 0.817720 | 2.848602e-52 | -8.615850e-47 |
| Msa0769980 | Msa0999430 | 0.816141 | 6.445405e-52 | -8.615850e-47 |
| Msa0807370 | Msa0999430 | 0.800525 | 1.383421e-48 | -8.615850e-47 |
| Msa0808080 | Msa0999430 | 0.813318 | 2.720190e-51 | -8.615850e-47 |
| Msa0824680 | Msa0999430 | 0.808281 | 3.345070e-50 | -8.615850e-47 |
| Msa0127800 | Msa0999430 | 0.812264 | 4.626069e-51 | -8.615850e-47 |
| Msa0159340 | Msa0999430 | 0.806601 | 7.597767e-50 | -8.615850e-47 |
| Msa0160550 | Msa0999430 | 0.816566 | 5.177981e-52 | -8.615850e-47 |
| Msa0162130 | Msa0999430 | 0.806861 | 6.696077e-50 | -8.615850e-47 |
| Msa0180500 | Msa0999430 | 0.823048 | 1.708217e-53 | -8.615850e-47 |
| Msa0208350 | Msa0999430 | 0.807972 | 3.893085e-50 | -8.615850e-47 |
| Msa0229380 | Msa0999430 | 0.803661 | 3.133780e-49 | -8.615850e-47 |
| Msa0369220 | Msa0999430 | 0.802379 | 5.768462e-49 | -8.615850e-47 |
| Msa0372340 | Msa0999430 | 0.827078 | 1.908169e-54 | -8.615850e-47 |
| Msa0387750 | Msa0999430 | 0.812033 | 5.195346e-51 | -8.615850e-47 |
| Msa0402790 | Msa0999430 | 0.815406 | 9.395824e-52 | -8.615850e-47 |
| Msa0999430 | Msa1029050 | 0.805572 | 1.251180e-49 | -8.615850e-47 |
| Msa0999430 | Msa1030620 | 0.809835 | 1.554818e-50 | -8.615850e-47 |
| Msa0999430 | Msa1037420 | 0.853160 | 2.870454e-61 | -8.615850e-47 |
| Msa0999430 | Msa1043050 | 0.803831 | 2.889611e-49 | -8.615850e-47 |
| Msa0999430 | Msa1051200 | 0.815757 | 7.850211e-52 | -8.615850e-47 |
| Msa0999430 | Msa1104090 | 0.809623 | 1.727149e-50 | -8.615850e-47 |
| Msa0999430 | Msa1113170 | 0.820805 | 5.649188e-53 | -8.615850e-47 |
| Msa0999430 | Msa1115080 | 0.801844 | 7.434438e-49 | -8.615850e-47 |
| Msa0999430 | Msa1123810 | 0.824132 | 9.524059e-54 | -8.615850e-47 |
| Msa0999430 | Msa1129730 | 0.800121 | 1.672011e-48 | -8.615850e-47 |
| Msa0999430 | Msa1150710 | 0.809721 | 1.644891e-50 | -8.615850e-47 |
| Msa0999430 | Msa1174040 | 0.811429 | 7.032016e-51 | -8.615850e-47 |
| Msa0999430 | Msa1180500 | 0.801259 | 9.794690e-49 | -8.615850e-47 |
| Msa0999430 | Msa1188070 | 0.806481 | 8.057540e-50 | -8.615850e-47 |
| Msa0999430 | Msa1210020 | 0.811185 | 7.944012e-51 | -8.615850e-47 |
| Msa0999430 | Msa1231840 | 0.814979 | 1.169421e-51 | -8.615850e-47 |
| Msa0999430 | Msa1232740 | 0.805858 | 1.089411e-49 | -8.615850e-47 |
| Msa0999430 | Msa1253020 | 0.802914 | 4.474369e-49 | -8.615850e-47 |
| Msa0999430 | Msa1274560 | 0.810211 | 1.290147e-50 | -8.615850e-47 |
| Msa0999430 | Msa1275360 | 0.817769 | 2.776765e-52 | -8.615850e-47 |
| Msa0999430 | Msa1284680 | 0.805408 | 1.354351e-49 | -8.615850e-47 |
| Msa0999430 | Msa1298510 | 0.814343 | 1.616777e-51 | -8.615850e-47 |
| Msa0999430 | Msa1306860 | 0.804995 | 1.652418e-49 | -8.615850e-47 |
| Msa0999430 | Msa1312520 | 0.808596 | 2.866312e-50 | -8.615850e-47 |
| Msa0999430 | Msa1313320 | 0.804032 | 2.624871e-49 | -8.615850e-47 |
| Msa0999430 | Msa1322490 | 0.805243 | 1.466801e-49 | -8.615850e-47 |
| Msa0999430 | Msa1340470 | 0.803364 | 3.611546e-49 | -8.615850e-47 |
| Msa0999430 | Msa1385770 | 0.821131 | 4.751925e-53 | -8.615850e-47 |
| Msa0999430 | Msa1409240 | 0.822146 | 2.769023e-53 | -8.615850e-47 |
| Msa0999430 | Msa1434140 | 0.826503 | 2.617122e-54 | -8.615850e-47 |
| Msa0261550 | Msa0999430 | 0.813565 | 2.400594e-51 | -8.615850e-47 |
| Msa0304510 | Msa0999430 | 0.808509 | 2.990984e-50 | -8.615850e-47 |
| Msa0336320 | Msa0999430 | 0.801837 | 7.456550e-49 | -8.615850e-47 |
| Msa0340380 | Msa0999430 | 0.805764 | 1.140269e-49 | -8.615850e-47 |
| Msa0343850 | Msa0999430 | 0.812319 | 4.500706e-51 | -8.615850e-47 |
| Msa0363790 | Msa0999430 | 0.802862 | 4.586078e-49 | -8.615850e-47 |
| Msa0519000 | Msa0999430 | 0.800422 | 1.451763e-48 | -8.615850e-47 |
| Msa0529040 | Msa0999430 | 0.800780 | 1.227413e-48 | -8.615850e-47 |
| Msa0541360 | Msa0999430 | 0.807336 | 5.312514e-50 | -8.615850e-47 |
| Msa0545080 | Msa0999430 | 0.820553 | 6.454128e-53 | -8.615850e-47 |
| Msa0545700 | Msa0999430 | 0.821782 | 3.361651e-53 | -8.615850e-47 |
| Msa0849030 | Msa0999430 | 0.821349 | 4.232698e-53 | -8.615850e-47 |
| Msa0857640 | Msa0999430 | 0.800186 | 1.621742e-48 | -8.615850e-47 |
| Msa0897330 | Msa0999430 | 0.827351 | 1.641457e-54 | -8.615850e-47 |
| Msa0927260 | Msa0999430 | 0.851729 | 7.341548e-61 | -8.615850e-47 |
| Msa0927380 | Msa0999430 | 0.816173 | 6.338992e-52 | -8.615850e-47 |
| Msa0949590 | Msa0999430 | 0.805067 | 1.596230e-49 | -8.615850e-47 |
| Msa0969810 | Msa0999430 | 0.803444 | 3.475595e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999430 | MtrunA17_Chr6g0485571 | 88.352 | 352 | 33 | 4 | 1 | 351 | 1 | 345 | 0.0 | 577 |
| Msa0999430 | MtrunA17_Chr5g0410881 | 43.802 | 242 | 120 | 5 | 3 | 233 | 24 | 260 | 3.92e-58 | 196 |
| Msa0999430 | MtrunA17_Chr3g0135831 | 44.608 | 204 | 112 | 1 | 11 | 213 | 46 | 249 | 3.76e-54 | 182 |
| Msa0999430 | MtrunA17_Chr4g0039891 | 44.340 | 212 | 109 | 4 | 6 | 208 | 7 | 218 | 2.97e-53 | 182 |
| Msa0999430 | MtrunA17_Chr7g0260331 | 39.655 | 232 | 129 | 4 | 11 | 234 | 49 | 277 | 4.93e-51 | 173 |
| Msa0999430 | MtrunA17_Chr1g0204741 | 42.326 | 215 | 98 | 4 | 11 | 210 | 40 | 243 | 1.42e-50 | 171 |
| Msa0999430 | MtrunA17_Chr4g0071051 | 44.041 | 193 | 100 | 2 | 11 | 202 | 101 | 286 | 4.73e-45 | 159 |
| Msa0999430 | MtrunA17_Chr8g0392001 | 45.918 | 196 | 98 | 3 | 9 | 196 | 20 | 215 | 5.07e-45 | 158 |
| Msa0999430 | MtrunA17_Chr8g0379701 | 40.887 | 203 | 111 | 4 | 9 | 208 | 10 | 206 | 1.80e-43 | 154 |
| Msa0999430 | MtrunA17_Chr6g0467041 | 41.589 | 214 | 111 | 5 | 9 | 214 | 20 | 227 | 2.55e-43 | 152 |
| Msa0999430 | MtrunA17_Chr1g0185131 | 43.407 | 182 | 79 | 3 | 11 | 185 | 32 | 196 | 2.27e-41 | 147 |
| Msa0999430 | MtrunA17_Chr8g0378061 | 39.394 | 231 | 92 | 6 | 12 | 217 | 23 | 230 | 7.21e-40 | 147 |
| Msa0999430 | MtrunA17_Chr2g0284481 | 40.541 | 185 | 98 | 2 | 9 | 185 | 13 | 193 | 6.84e-38 | 139 |
| Msa0999430 | MtrunA17_Chr2g0330821 | 37.143 | 210 | 93 | 3 | 10 | 201 | 78 | 266 | 3.20e-37 | 137 |
| Msa0999430 | MtrunA17_Chr3g0134031 | 55.263 | 114 | 51 | 0 | 8 | 121 | 21 | 134 | 3.87e-37 | 137 |
| Msa0999430 | MtrunA17_Chr5g0397881 | 59.184 | 98 | 40 | 0 | 5 | 102 | 18 | 115 | 1.16e-36 | 135 |
| Msa0999430 | MtrunA17_Chr8g0375041 | 38.265 | 196 | 104 | 3 | 3 | 192 | 1 | 185 | 1.28e-36 | 132 |
| Msa0999430 | MtrunA17_Chr1g0203601 | 58.252 | 103 | 43 | 0 | 2 | 104 | 9 | 111 | 4.93e-36 | 132 |
| Msa0999430 | MtrunA17_Chr5g0402291 | 35.749 | 207 | 119 | 2 | 3 | 195 | 1 | 207 | 1.26e-35 | 131 |
| Msa0999430 | MtrunA17_Chr5g0441531 | 59.184 | 98 | 40 | 0 | 5 | 102 | 19 | 116 | 6.97e-35 | 128 |
| Msa0999430 | MtrunA17_Chr6g0472421 | 57.143 | 98 | 42 | 0 | 5 | 102 | 27 | 124 | 1.47e-33 | 127 |
| Msa0999430 | MtrunA17_Chr7g0257331 | 54.839 | 93 | 42 | 0 | 10 | 102 | 21 | 113 | 4.61e-32 | 120 |
| Msa0999430 | MtrunA17_Chr4g0047421 | 49.485 | 97 | 45 | 1 | 10 | 102 | 32 | 128 | 4.99e-27 | 106 |
| Msa0999430 | MtrunA17_Chr1g0179311 | 33.742 | 163 | 88 | 5 | 50 | 207 | 2 | 149 | 1.92e-19 | 88.2 |
| Msa0999430 | MtrunA17_Chr1g0179321 | 51.429 | 70 | 34 | 0 | 1 | 70 | 39 | 108 | 5.28e-18 | 78.6 |
| Msa0999430 | MtrunA17_Chr4g0023771 | 50.000 | 62 | 31 | 0 | 7 | 68 | 11 | 72 | 8.56e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999430 | AT3G24520.1 | 59.906 | 212 | 59 | 3 | 8 | 215 | 14 | 203 | 9.82e-81 | 249 |
| Msa0999430 | AT4G17750.1 | 46.694 | 242 | 106 | 5 | 6 | 229 | 47 | 283 | 5.56e-59 | 198 |
| Msa0999430 | AT1G32330.2 | 49.239 | 197 | 90 | 2 | 6 | 192 | 32 | 228 | 8.92e-57 | 192 |
| Msa0999430 | AT1G32330.1 | 49.239 | 197 | 90 | 2 | 6 | 192 | 32 | 228 | 9.91e-57 | 192 |
| Msa0999430 | AT2G26150.1 | 44.878 | 205 | 108 | 3 | 11 | 210 | 44 | 248 | 3.41e-53 | 179 |
| Msa0999430 | AT2G26150.4 | 44.878 | 205 | 108 | 3 | 11 | 210 | 44 | 248 | 3.41e-53 | 179 |
| Msa0999430 | AT3G22830.1 | 37.778 | 270 | 133 | 6 | 11 | 268 | 61 | 307 | 2.17e-52 | 179 |
| Msa0999430 | AT3G02990.1 | 44.712 | 208 | 107 | 4 | 9 | 208 | 21 | 228 | 8.89e-51 | 176 |
| Msa0999430 | AT5G16820.1 | 44.340 | 212 | 108 | 4 | 7 | 208 | 23 | 234 | 2.08e-49 | 172 |
| Msa0999430 | AT5G16820.2 | 44.340 | 212 | 108 | 4 | 7 | 208 | 23 | 234 | 2.08e-49 | 172 |
| Msa0999430 | AT3G51910.1 | 42.188 | 192 | 97 | 2 | 7 | 198 | 25 | 202 | 5.93e-48 | 163 |
| Msa0999430 | AT5G03720.2 | 36.567 | 268 | 145 | 4 | 5 | 259 | 49 | 304 | 2.65e-47 | 165 |
| Msa0999430 | AT5G03720.1 | 36.567 | 268 | 145 | 4 | 5 | 259 | 49 | 304 | 2.65e-47 | 165 |
| Msa0999430 | AT1G67970.1 | 41.667 | 192 | 106 | 4 | 9 | 196 | 17 | 206 | 5.07e-47 | 164 |
| Msa0999430 | AT3G63350.1 | 41.500 | 200 | 105 | 4 | 10 | 203 | 27 | 220 | 1.50e-45 | 157 |
| Msa0999430 | AT5G54070.1 | 38.021 | 192 | 109 | 2 | 8 | 198 | 68 | 250 | 9.91e-42 | 149 |
| Msa0999430 | AT5G43840.1 | 38.693 | 199 | 102 | 3 | 10 | 201 | 18 | 203 | 3.33e-40 | 143 |
| Msa0999430 | AT4G18880.1 | 36.434 | 258 | 152 | 3 | 9 | 257 | 13 | 267 | 1.45e-38 | 142 |
| Msa0999430 | AT5G45710.3 | 33.220 | 295 | 183 | 6 | 3 | 284 | 1 | 294 | 5.50e-38 | 139 |
| Msa0999430 | AT5G45710.1 | 33.220 | 295 | 183 | 6 | 3 | 284 | 1 | 294 | 5.50e-38 | 139 |
| Msa0999430 | AT4G13980.1 | 37.186 | 199 | 119 | 3 | 12 | 208 | 24 | 218 | 5.53e-38 | 141 |
| Msa0999430 | AT1G46264.1 | 63.158 | 95 | 35 | 0 | 8 | 102 | 31 | 125 | 3.72e-37 | 137 |
| Msa0999430 | AT4G11660.1 | 59.184 | 98 | 40 | 0 | 5 | 102 | 53 | 150 | 1.29e-34 | 130 |
| Msa0999430 | AT4G36990.1 | 35.468 | 203 | 109 | 4 | 5 | 192 | 8 | 203 | 7.15e-34 | 126 |
| Msa0999430 | AT5G62020.1 | 55.102 | 98 | 44 | 0 | 5 | 102 | 17 | 114 | 7.94e-33 | 124 |
| Msa0999430 | AT2G41690.1 | 38.286 | 175 | 101 | 2 | 11 | 178 | 40 | 214 | 1.30e-31 | 119 |
| Msa0999430 | AT2G26150.3 | 39.041 | 146 | 84 | 3 | 71 | 211 | 49 | 194 | 4.81e-24 | 100 |
| Msa0999430 | AT2G26150.2 | 39.041 | 146 | 84 | 3 | 71 | 211 | 49 | 194 | 4.81e-24 | 100 |
| Msa0999430 | AT4G18870.1 | 41.573 | 89 | 52 | 0 | 11 | 99 | 146 | 234 | 3.45e-18 | 84.0 |
| Msa0999430 | AT4G18870.1 | 45.161 | 93 | 46 | 2 | 9 | 99 | 11 | 100 | 5.79e-18 | 83.6 |
| Msa0999430 | AT4G19630.1 | 33.654 | 104 | 66 | 1 | 1 | 101 | 1 | 104 | 3.79e-12 | 63.5 |
Find 90 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAAGTGATAGTAGTAAAA+AGG | 0.204760 | 6_4:+81392387 | Msa0999430:CDS |
| AGTATTCTAGACAAAATTTC+AGG | 0.248037 | 6_4:-81391992 | None:intergenic |
| TGGCTCCGGTGGGTGGTTGG+TGG | 0.288941 | 6_4:+81392263 | Msa0999430:CDS |
| GCTCCGGTGGGTGGTTGGTG+GGG | 0.299967 | 6_4:+81392265 | Msa0999430:CDS |
| CCACCTTCTAACAACGAAAA+AGG | 0.302300 | 6_4:-81392466 | None:intergenic |
| AAGAAACATGTTGGTGGTAT+TGG | 0.321921 | 6_4:+81391740 | Msa0999430:CDS |
| TTGATAAGGTTATCTGTGTT+TGG | 0.326130 | 6_4:-81391189 | None:intergenic |
| AGTTTGGACAGATGGGTTAT+AGG | 0.339452 | 6_4:+81392296 | Msa0999430:CDS |
| CTCCGGTGGGTGGTTGGTGG+GGG | 0.345456 | 6_4:+81392266 | Msa0999430:CDS |
| ATTTGTTGAAGAACATAGTT+AGG | 0.347369 | 6_4:+81391717 | Msa0999430:CDS |
| GAAAAGTGGATCCGGATAGA+TGG | 0.355208 | 6_4:+81391657 | Msa0999430:CDS |
| CCGTGCGCCGCCGCAGGAGG+TGG | 0.356999 | 6_4:+81392243 | Msa0999430:CDS |
| GGGCATGGCGGTGGCAAATT+CGG | 0.364204 | 6_4:+81392126 | Msa0999430:CDS |
| CCACCTCCTGCGGCGGCGCA+CGG | 0.381866 | 6_4:-81392243 | None:intergenic |
| ACGATGAAACTGTTGTTAGA+TGG | 0.404226 | 6_4:-81391219 | None:intergenic |
| GGCTCCGGTGGGTGGTTGGT+GGG | 0.407249 | 6_4:+81392264 | Msa0999430:CDS |
| CGGCGCCGGCGCCGATGATG+TGG | 0.410102 | 6_4:+81392356 | Msa0999430:CDS |
| GCCGGTGTTGTCTCCGGCGC+CGG | 0.429564 | 6_4:+81392342 | Msa0999430:CDS |
| CATGTTGGTGGTATTGGAAA+TGG | 0.433048 | 6_4:+81391746 | Msa0999430:CDS |
| GGCTAAGGCGGCTGTGACGG+CGG | 0.443095 | 6_4:+81392075 | Msa0999430:CDS |
| GATGGGAATTTGCGAATGAA+TGG | 0.445117 | 6_4:+81391675 | Msa0999430:CDS |
| TTCGGTGAAGATGGAGTTTG+AGG | 0.446034 | 6_4:+81392144 | Msa0999430:CDS |
| TTGTGAAGTTCCACGGTTGC+CGG | 0.450265 | 6_4:+81392324 | Msa0999430:CDS |
| GTTTGAGGAAGATGAGTTAA+CGG | 0.452324 | 6_4:+81392159 | Msa0999430:CDS |
| GTCTAGAATACTCAATGAAA+GGG | 0.455161 | 6_4:+81392003 | Msa0999430:CDS |
| GTCAACTTCCTCGGAGTCAT+CGG | 0.460070 | 6_4:+81392105 | Msa0999430:CDS |
| TAGATGGGCCCCACTTGATA+AGG | 0.462941 | 6_4:-81391203 | None:intergenic |
| TGTTTAGGGTTTCAGAAAAG+TGG | 0.466529 | 6_4:+81391643 | Msa0999430:intron |
| ACGGTTGCCGGTGTTGTCTC+CGG | 0.466930 | 6_4:+81392336 | Msa0999430:CDS |
| CTTGTGTTCTTAAATGGGAA+TGG | 0.469203 | 6_4:+81391110 | None:intergenic |
| TTTAGAAGAAGATGAAGCTA+TGG | 0.473347 | 6_4:+81391835 | Msa0999430:CDS |
| TTGTTGTGTTTGAAGAAAAG+AGG | 0.474502 | 6_4:-81391276 | None:intergenic |
| GGAGTCATCGGGCATGGCGG+TGG | 0.474769 | 6_4:+81392117 | Msa0999430:CDS |
| CACATCATCGGCGCCGGCGC+CGG | 0.474975 | 6_4:-81392355 | None:intergenic |
| CAGGAGGTGGCTCCGGTGGG+TGG | 0.478583 | 6_4:+81392256 | Msa0999430:CDS |
| GGCGCCGGCGCCGATGATGT+GGG | 0.479475 | 6_4:+81392357 | Msa0999430:CDS |
| TTCGCAAATTCCCATCTATC+CGG | 0.480483 | 6_4:-81391668 | None:intergenic |
| GTTGATATCTCCGGTGGCTA+AGG | 0.482556 | 6_4:+81392060 | Msa0999430:CDS |
| TATGATGTCGTCGTCGTCGC+CGG | 0.484425 | 6_4:+81392192 | Msa0999430:CDS |
| GCCGCCGCAGGAGGTGGCTC+CGG | 0.486326 | 6_4:+81392249 | Msa0999430:CDS |
| GGGTTTCAGAAAAGTGGATC+CGG | 0.486703 | 6_4:+81391649 | Msa0999430:intron |
| CCGCAGGAGGTGGCTCCGGT+GGG | 0.488488 | 6_4:+81392253 | Msa0999430:CDS |
| AGGTGGCTCCGGTGGGTGGT+TGG | 0.489246 | 6_4:+81392260 | Msa0999430:CDS |
| GCGAATGAATGGTTTCTAAG+AGG | 0.489855 | 6_4:+81391686 | Msa0999430:CDS |
| AATTTAGAAGAAGAGCTTCA+AGG | 0.492990 | 6_4:+81391893 | Msa0999430:CDS |
| TGTCTAGAATACTCAATGAA+AGG | 0.495076 | 6_4:+81392002 | Msa0999430:CDS |
| GCAGATGGAGTTTGGACAGA+TGG | 0.497763 | 6_4:+81392288 | Msa0999430:CDS |
| GCCGCAGGAGGTGGCTCCGG+TGG | 0.505808 | 6_4:+81392252 | Msa0999430:CDS |
| TCAACTTCCTCGGAGTCATC+GGG | 0.508311 | 6_4:+81392106 | Msa0999430:CDS |
| GGTGGCTAAGGCGGCTGTGA+CGG | 0.509164 | 6_4:+81392072 | Msa0999430:CDS |
| CGATGAAACTGTTGTTAGAT+GGG | 0.511534 | 6_4:-81391218 | None:intergenic |
| TCGTCGTCGTCGCCGGAGGT+TGG | 0.511823 | 6_4:+81392199 | Msa0999430:CDS |
| AGAGAGTGAGAAAATTCTAA+AGG | 0.514858 | 6_4:-81391249 | None:intergenic |
| GAGGAAGATGAGTTAACGGT+TGG | 0.515400 | 6_4:+81392163 | Msa0999430:CDS |
| AAAAGTGGATCCGGATAGAT+GGG | 0.516894 | 6_4:+81391658 | Msa0999430:CDS |
| AGAAGATGAAGCTATGGTGA+TGG | 0.518088 | 6_4:+81391841 | Msa0999430:CDS |
| GGCAACGACGTCAACTTCCT+CGG | 0.518118 | 6_4:+81392096 | Msa0999430:CDS |
| CAGATGGAGTTTGGACAGAT+GGG | 0.518140 | 6_4:+81392289 | Msa0999430:CDS |
| GAAAAGACCACAACAAATGA+TGG | 0.518696 | 6_4:+81391943 | Msa0999430:CDS |
| ACCGGAGCCACCTCCTGCGG+CGG | 0.521738 | 6_4:-81392250 | None:intergenic |
| GAAACGACGGTTGATATCTC+CGG | 0.526713 | 6_4:+81392051 | Msa0999430:CDS |
| GCACCGTGCGCCGCCGCAGG+AGG | 0.529914 | 6_4:+81392240 | Msa0999430:CDS |
| TTCCTCGGAGTCATCGGGCA+TGG | 0.539288 | 6_4:+81392111 | Msa0999430:CDS |
| GGTGGCAAATTCGGTGAAGA+TGG | 0.545610 | 6_4:+81392135 | Msa0999430:CDS |
| GTCACAGCCGCCTTAGCCAC+CGG | 0.546425 | 6_4:-81392070 | None:intergenic |
| TCACCCCACATCATCGGCGC+CGG | 0.555196 | 6_4:-81392361 | None:intergenic |
| GCCGGCGCCGGAGACAACAC+CGG | 0.556830 | 6_4:-81392343 | None:intergenic |
| CGGAAATTTCAATGAAATGA+CGG | 0.564288 | 6_4:+81392417 | Msa0999430:CDS |
| TCAATTTCAAAACCAACCTC+CGG | 0.571013 | 6_4:-81392211 | None:intergenic |
| GGCGTGATTGTGAAGTTCCA+CGG | 0.574303 | 6_4:+81392317 | Msa0999430:CDS |
| CTATTCTCACCCCACATCAT+CGG | 0.575525 | 6_4:-81392367 | None:intergenic |
| GGAGACAACACCGGCAACCG+TGG | 0.596703 | 6_4:-81392334 | None:intergenic |
| ACACAGATAACCTTATCAAG+TGG | 0.597268 | 6_4:+81391193 | Msa0999430:CDS |
| CACAGATAACCTTATCAAGT+GGG | 0.597725 | 6_4:+81391194 | Msa0999430:CDS |
| CCCACCGGAGCCACCTCCTG+CGG | 0.603641 | 6_4:-81392253 | None:intergenic |
| GCGCCGGCGCCGATGATGTG+GGG | 0.609629 | 6_4:+81392358 | Msa0999430:CDS |
| GATATCTCCGGTGGCTAAGG+CGG | 0.616749 | 6_4:+81392063 | Msa0999430:CDS |
| GATGTCGTCGTCGTCGCCGG+AGG | 0.621499 | 6_4:+81392195 | Msa0999430:CDS |
| GTTAGGAAGAAACATGTTGG+TGG | 0.621782 | 6_4:+81391734 | Msa0999430:CDS |
| CGCCATGCCCGATGACTCCG+AGG | 0.624450 | 6_4:-81392113 | None:intergenic |
| CATTATGAAGACATACCACA+TGG | 0.631169 | 6_4:+81391158 | Msa0999430:CDS |
| TGTTTGGTTCATTAACCATG+TGG | 0.639928 | 6_4:-81391173 | None:intergenic |
| ATAGTTAGGAAGAAACATGT+TGG | 0.649558 | 6_4:+81391731 | Msa0999430:CDS |
| ACGACGGTTGATATCTCCGG+TGG | 0.680566 | 6_4:+81392054 | Msa0999430:CDS |
| CTCGGAGTCATCGGGCATGG+CGG | 0.681310 | 6_4:+81392114 | Msa0999430:CDS |
| TGGTATGTCTTCATAATGAA+CGG | 0.681423 | 6_4:-81391153 | None:intergenic |
| TTGTTGATAAGAAGAAACGA+CGG | 0.699827 | 6_4:+81392038 | Msa0999430:CDS |
| ACAGATAACCTTATCAAGTG+GGG | 0.700643 | 6_4:+81391195 | Msa0999430:CDS |
| TTGGTGGTATTGGAAATGGA+AGG | 0.715173 | 6_4:+81391750 | Msa0999430:CDS |
| AAATTTCAATGAAATGACGG+CGG | 0.731573 | 6_4:+81392420 | Msa0999430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATAATAATTATTTTAATG+AGG | + | chr6_4:81391799-81391818 | Msa0999430:CDS | 10.0% |
| !!! | CAATAATAATTATTTTAATG+AGG | + | chr6_4:81391799-81391818 | Msa0999430:CDS | 10.0% |
| !!! | AAAAAATTGATAATTGGATT+AGG | - | chr6_4:81391344-81391363 | None:intergenic | 15.0% |
| !!! | GTACTAAAAAAATTGATAAT+TGG | - | chr6_4:81391350-81391369 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTACAAATCAAAT+CGG | - | chr6_4:81391469-81391488 | None:intergenic | 15.0% |
| !!! | AAAAAATTGATAATTGGATT+AGG | - | chr6_4:81391344-81391363 | None:intergenic | 15.0% |
| !!! | GTACTAAAAAAATTGATAAT+TGG | - | chr6_4:81391350-81391369 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTACAAATCAAAT+CGG | - | chr6_4:81391469-81391488 | None:intergenic | 15.0% |
| !!! | AAAAAGTGAGTTTTTGAAGT+GGG | - | chr6_4:81391376-81391395 | None:intergenic | 25.0% |
| !!! | AAAAAAGTGAGTTTTTGAAG+TGG | - | chr6_4:81391377-81391396 | None:intergenic | 25.0% |
| ! | AAATTGTGACGAACTAAATT+AGG | - | chr6_4:81391444-81391463 | None:intergenic | 25.0% |
| !!! | AGTAATGTTTTTGTCTGAAT+TGG | + | chr6_4:81391522-81391541 | Msa0999430:intron | 25.0% |
| !!! | GTAATGTTTTTGTCTGAATT+GGG | + | chr6_4:81391523-81391542 | Msa0999430:intron | 25.0% |
| !!! | TGTGTTTCTTGTTTTTGTTT+AGG | + | chr6_4:81391628-81391647 | Msa0999430:intron | 25.0% |
| !!! | GTGTTTCTTGTTTTTGTTTA+GGG | + | chr6_4:81391629-81391648 | Msa0999430:intron | 25.0% |
| !! | ATTTGTTGAAGAACATAGTT+AGG | + | chr6_4:81391717-81391736 | Msa0999430:CDS | 25.0% |
| ! | AGTATTCTAGACAAAATTTC+AGG | - | chr6_4:81391995-81392014 | None:intergenic | 25.0% |
| ! | TAGAAGTGATAGTAGTAAAA+AGG | + | chr6_4:81392387-81392406 | Msa0999430:CDS | 25.0% |
| ! | AGAAGTGATAGTAGTAAAAA+GGG | + | chr6_4:81392388-81392407 | Msa0999430:CDS | 25.0% |
| !!! | AAAAAGTGAGTTTTTGAAGT+GGG | - | chr6_4:81391376-81391395 | None:intergenic | 25.0% |
| !!! | AAAAAAGTGAGTTTTTGAAG+TGG | - | chr6_4:81391377-81391396 | None:intergenic | 25.0% |
| ! | AAATTGTGACGAACTAAATT+AGG | - | chr6_4:81391444-81391463 | None:intergenic | 25.0% |
| !!! | AGTAATGTTTTTGTCTGAAT+TGG | + | chr6_4:81391522-81391541 | Msa0999430:intron | 25.0% |
| !!! | GTAATGTTTTTGTCTGAATT+GGG | + | chr6_4:81391523-81391542 | Msa0999430:intron | 25.0% |
| !!! | TGTGTTTCTTGTTTTTGTTT+AGG | + | chr6_4:81391628-81391647 | Msa0999430:intron | 25.0% |
| !!! | GTGTTTCTTGTTTTTGTTTA+GGG | + | chr6_4:81391629-81391648 | Msa0999430:intron | 25.0% |
| !! | ATTTGTTGAAGAACATAGTT+AGG | + | chr6_4:81391717-81391736 | Msa0999430:CDS | 25.0% |
| ! | AGTATTCTAGACAAAATTTC+AGG | - | chr6_4:81391995-81392014 | None:intergenic | 25.0% |
| ! | TAGAAGTGATAGTAGTAAAA+AGG | + | chr6_4:81392387-81392406 | Msa0999430:CDS | 25.0% |
| ! | AGAAGTGATAGTAGTAAAAA+GGG | + | chr6_4:81392388-81392407 | Msa0999430:CDS | 25.0% |
| TGGTATGTCTTCATAATGAA+CGG | - | chr6_4:81391156-81391175 | None:intergenic | 30.0% | |
| TTGATAAGGTTATCTGTGTT+TGG | - | chr6_4:81391192-81391211 | None:intergenic | 30.0% | |
| AGAGAGTGAGAAAATTCTAA+AGG | - | chr6_4:81391252-81391271 | None:intergenic | 30.0% | |
| TTGTTGTGTTTGAAGAAAAG+AGG | - | chr6_4:81391279-81391298 | None:intergenic | 30.0% | |
| ATAGTTAGGAAGAAACATGT+TGG | + | chr6_4:81391731-81391750 | Msa0999430:CDS | 30.0% | |
| TTTAGAAGAAGATGAAGCTA+TGG | + | chr6_4:81391835-81391854 | Msa0999430:CDS | 30.0% | |
| AATTTAGAAGAAGAGCTTCA+AGG | + | chr6_4:81391893-81391912 | Msa0999430:CDS | 30.0% | |
| ! | AAAAAAGCCATCATTTGTTG+TGG | - | chr6_4:81391953-81391972 | None:intergenic | 30.0% |
| ! | TGTCTAGAATACTCAATGAA+AGG | + | chr6_4:81392002-81392021 | Msa0999430:CDS | 30.0% |
| ! | GTCTAGAATACTCAATGAAA+GGG | + | chr6_4:81392003-81392022 | Msa0999430:CDS | 30.0% |
| ! | TTGTTGATAAGAAGAAACGA+CGG | + | chr6_4:81392038-81392057 | Msa0999430:CDS | 30.0% |
| GAAGTGATAGTAGTAAAAAG+GGG | + | chr6_4:81392389-81392408 | Msa0999430:CDS | 30.0% | |
| AAGTGATAGTAGTAAAAAGG+GGG | + | chr6_4:81392390-81392409 | Msa0999430:CDS | 30.0% | |
| CGGAAATTTCAATGAAATGA+CGG | + | chr6_4:81392417-81392436 | Msa0999430:CDS | 30.0% | |
| AAATTTCAATGAAATGACGG+CGG | + | chr6_4:81392420-81392439 | Msa0999430:CDS | 30.0% | |
| TCTAACAACGAAAAAGGATA+AGG | - | chr6_4:81392463-81392482 | None:intergenic | 30.0% | |
| !! | TATCCTTTTTCGTTGTTAGA+AGG | + | chr6_4:81392463-81392482 | Msa0999430:CDS | 30.0% |
| TGGTATGTCTTCATAATGAA+CGG | - | chr6_4:81391156-81391175 | None:intergenic | 30.0% | |
| TTGATAAGGTTATCTGTGTT+TGG | - | chr6_4:81391192-81391211 | None:intergenic | 30.0% | |
| AGAGAGTGAGAAAATTCTAA+AGG | - | chr6_4:81391252-81391271 | None:intergenic | 30.0% | |
| TTGTTGTGTTTGAAGAAAAG+AGG | - | chr6_4:81391279-81391298 | None:intergenic | 30.0% | |
| ATAGTTAGGAAGAAACATGT+TGG | + | chr6_4:81391731-81391750 | Msa0999430:CDS | 30.0% | |
| TTTAGAAGAAGATGAAGCTA+TGG | + | chr6_4:81391835-81391854 | Msa0999430:CDS | 30.0% | |
| AATTTAGAAGAAGAGCTTCA+AGG | + | chr6_4:81391893-81391912 | Msa0999430:CDS | 30.0% | |
| ! | AAAAAAGCCATCATTTGTTG+TGG | - | chr6_4:81391953-81391972 | None:intergenic | 30.0% |
| ! | TGTCTAGAATACTCAATGAA+AGG | + | chr6_4:81392002-81392021 | Msa0999430:CDS | 30.0% |
| ! | GTCTAGAATACTCAATGAAA+GGG | + | chr6_4:81392003-81392022 | Msa0999430:CDS | 30.0% |
| ! | TTGTTGATAAGAAGAAACGA+CGG | + | chr6_4:81392038-81392057 | Msa0999430:CDS | 30.0% |
| GAAGTGATAGTAGTAAAAAG+GGG | + | chr6_4:81392389-81392408 | Msa0999430:CDS | 30.0% | |
| AAGTGATAGTAGTAAAAAGG+GGG | + | chr6_4:81392390-81392409 | Msa0999430:CDS | 30.0% | |
| CGGAAATTTCAATGAAATGA+CGG | + | chr6_4:81392417-81392436 | Msa0999430:CDS | 30.0% | |
| AAATTTCAATGAAATGACGG+CGG | + | chr6_4:81392420-81392439 | Msa0999430:CDS | 30.0% | |
| TCTAACAACGAAAAAGGATA+AGG | - | chr6_4:81392463-81392482 | None:intergenic | 30.0% | |
| !! | TATCCTTTTTCGTTGTTAGA+AGG | + | chr6_4:81392463-81392482 | Msa0999430:CDS | 30.0% |
| CATTATGAAGACATACCACA+TGG | + | chr6_4:81391158-81391177 | Msa0999430:CDS | 35.0% | |
| ! | TGTTTGGTTCATTAACCATG+TGG | - | chr6_4:81391176-81391195 | None:intergenic | 35.0% |
| ACACAGATAACCTTATCAAG+TGG | + | chr6_4:81391193-81391212 | Msa0999430:CDS | 35.0% | |
| CACAGATAACCTTATCAAGT+GGG | + | chr6_4:81391194-81391213 | Msa0999430:CDS | 35.0% | |
| ACAGATAACCTTATCAAGTG+GGG | + | chr6_4:81391195-81391214 | Msa0999430:CDS | 35.0% | |
| CGATGAAACTGTTGTTAGAT+GGG | - | chr6_4:81391221-81391240 | None:intergenic | 35.0% | |
| ACGATGAAACTGTTGTTAGA+TGG | - | chr6_4:81391222-81391241 | None:intergenic | 35.0% | |
| ! | TGTTTAGGGTTTCAGAAAAG+TGG | + | chr6_4:81391643-81391662 | Msa0999430:intron | 35.0% |
| !! | AAGAAACATGTTGGTGGTAT+TGG | + | chr6_4:81391740-81391759 | Msa0999430:CDS | 35.0% |
| GAAAAGACCACAACAAATGA+TGG | + | chr6_4:81391943-81391962 | Msa0999430:CDS | 35.0% | |
| GTTTGAGGAAGATGAGTTAA+CGG | + | chr6_4:81392159-81392178 | Msa0999430:CDS | 35.0% | |
| TCAATTTCAAAACCAACCTC+CGG | - | chr6_4:81392214-81392233 | None:intergenic | 35.0% | |
| AGTGATAGTAGTAAAAAGGG+GGG | + | chr6_4:81392391-81392410 | Msa0999430:CDS | 35.0% | |
| AACAACGAAAAAGGATAAGG+TGG | - | chr6_4:81392460-81392479 | None:intergenic | 35.0% | |
| CATTATGAAGACATACCACA+TGG | + | chr6_4:81391158-81391177 | Msa0999430:CDS | 35.0% | |
| ! | TGTTTGGTTCATTAACCATG+TGG | - | chr6_4:81391176-81391195 | None:intergenic | 35.0% |
| ACACAGATAACCTTATCAAG+TGG | + | chr6_4:81391193-81391212 | Msa0999430:CDS | 35.0% | |
| CACAGATAACCTTATCAAGT+GGG | + | chr6_4:81391194-81391213 | Msa0999430:CDS | 35.0% | |
| ACAGATAACCTTATCAAGTG+GGG | + | chr6_4:81391195-81391214 | Msa0999430:CDS | 35.0% | |
| CGATGAAACTGTTGTTAGAT+GGG | - | chr6_4:81391221-81391240 | None:intergenic | 35.0% | |
| ACGATGAAACTGTTGTTAGA+TGG | - | chr6_4:81391222-81391241 | None:intergenic | 35.0% | |
| ! | TGTTTAGGGTTTCAGAAAAG+TGG | + | chr6_4:81391643-81391662 | Msa0999430:intron | 35.0% |
| !! | AAGAAACATGTTGGTGGTAT+TGG | + | chr6_4:81391740-81391759 | Msa0999430:CDS | 35.0% |
| GAAAAGACCACAACAAATGA+TGG | + | chr6_4:81391943-81391962 | Msa0999430:CDS | 35.0% | |
| GTTTGAGGAAGATGAGTTAA+CGG | + | chr6_4:81392159-81392178 | Msa0999430:CDS | 35.0% | |
| TCAATTTCAAAACCAACCTC+CGG | - | chr6_4:81392214-81392233 | None:intergenic | 35.0% | |
| AGTGATAGTAGTAAAAAGGG+GGG | + | chr6_4:81392391-81392410 | Msa0999430:CDS | 35.0% | |
| AACAACGAAAAAGGATAAGG+TGG | - | chr6_4:81392460-81392479 | None:intergenic | 35.0% | |
| AAAAGTGGATCCGGATAGAT+GGG | + | chr6_4:81391658-81391677 | Msa0999430:CDS | 40.0% | |
| TTCGCAAATTCCCATCTATC+CGG | - | chr6_4:81391671-81391690 | None:intergenic | 40.0% | |
| GATGGGAATTTGCGAATGAA+TGG | + | chr6_4:81391675-81391694 | Msa0999430:CDS | 40.0% | |
| GCGAATGAATGGTTTCTAAG+AGG | + | chr6_4:81391686-81391705 | Msa0999430:CDS | 40.0% | |
| GTTAGGAAGAAACATGTTGG+TGG | + | chr6_4:81391734-81391753 | Msa0999430:CDS | 40.0% | |
| !! | CATGTTGGTGGTATTGGAAA+TGG | + | chr6_4:81391746-81391765 | Msa0999430:CDS | 40.0% |
| ! | TTGGTGGTATTGGAAATGGA+AGG | + | chr6_4:81391750-81391769 | Msa0999430:CDS | 40.0% |
| AGAAGATGAAGCTATGGTGA+TGG | + | chr6_4:81391841-81391860 | Msa0999430:CDS | 40.0% | |
| !! | AGTTTGGACAGATGGGTTAT+AGG | + | chr6_4:81392296-81392315 | Msa0999430:CDS | 40.0% |
| CCACCTTCTAACAACGAAAA+AGG | - | chr6_4:81392469-81392488 | None:intergenic | 40.0% | |
| !! | CCTTTTTCGTTGTTAGAAGG+TGG | + | chr6_4:81392466-81392485 | Msa0999430:CDS | 40.0% |
| AAAAGTGGATCCGGATAGAT+GGG | + | chr6_4:81391658-81391677 | Msa0999430:CDS | 40.0% | |
| TTCGCAAATTCCCATCTATC+CGG | - | chr6_4:81391671-81391690 | None:intergenic | 40.0% | |
| GATGGGAATTTGCGAATGAA+TGG | + | chr6_4:81391675-81391694 | Msa0999430:CDS | 40.0% | |
| GCGAATGAATGGTTTCTAAG+AGG | + | chr6_4:81391686-81391705 | Msa0999430:CDS | 40.0% | |
| GTTAGGAAGAAACATGTTGG+TGG | + | chr6_4:81391734-81391753 | Msa0999430:CDS | 40.0% | |
| !! | CATGTTGGTGGTATTGGAAA+TGG | + | chr6_4:81391746-81391765 | Msa0999430:CDS | 40.0% |
| ! | TTGGTGGTATTGGAAATGGA+AGG | + | chr6_4:81391750-81391769 | Msa0999430:CDS | 40.0% |
| AGAAGATGAAGCTATGGTGA+TGG | + | chr6_4:81391841-81391860 | Msa0999430:CDS | 40.0% | |
| !! | AGTTTGGACAGATGGGTTAT+AGG | + | chr6_4:81392296-81392315 | Msa0999430:CDS | 40.0% |
| CCACCTTCTAACAACGAAAA+AGG | - | chr6_4:81392469-81392488 | None:intergenic | 40.0% | |
| !! | CCTTTTTCGTTGTTAGAAGG+TGG | + | chr6_4:81392466-81392485 | Msa0999430:CDS | 40.0% |
| GGGTTTCAGAAAAGTGGATC+CGG | + | chr6_4:81391649-81391668 | Msa0999430:intron | 45.0% | |
| GAAAAGTGGATCCGGATAGA+TGG | + | chr6_4:81391657-81391676 | Msa0999430:CDS | 45.0% | |
| ! | GAAACGACGGTTGATATCTC+CGG | + | chr6_4:81392051-81392070 | Msa0999430:CDS | 45.0% |
| TTCGGTGAAGATGGAGTTTG+AGG | + | chr6_4:81392144-81392163 | Msa0999430:CDS | 45.0% | |
| GAGGAAGATGAGTTAACGGT+TGG | + | chr6_4:81392163-81392182 | Msa0999430:CDS | 45.0% | |
| CAGATGGAGTTTGGACAGAT+GGG | + | chr6_4:81392289-81392308 | Msa0999430:CDS | 45.0% | |
| CTATTCTCACCCCACATCAT+CGG | - | chr6_4:81392370-81392389 | None:intergenic | 45.0% | |
| ! | AGTAGTAAAAAGGGGGGTGT+CGG | + | chr6_4:81392397-81392416 | Msa0999430:CDS | 45.0% |
| GGGTTTCAGAAAAGTGGATC+CGG | + | chr6_4:81391649-81391668 | Msa0999430:intron | 45.0% | |
| GAAAAGTGGATCCGGATAGA+TGG | + | chr6_4:81391657-81391676 | Msa0999430:CDS | 45.0% | |
| ! | GAAACGACGGTTGATATCTC+CGG | + | chr6_4:81392051-81392070 | Msa0999430:CDS | 45.0% |
| TTCGGTGAAGATGGAGTTTG+AGG | + | chr6_4:81392144-81392163 | Msa0999430:CDS | 45.0% | |
| GAGGAAGATGAGTTAACGGT+TGG | + | chr6_4:81392163-81392182 | Msa0999430:CDS | 45.0% | |
| CAGATGGAGTTTGGACAGAT+GGG | + | chr6_4:81392289-81392308 | Msa0999430:CDS | 45.0% | |
| CTATTCTCACCCCACATCAT+CGG | - | chr6_4:81392370-81392389 | None:intergenic | 45.0% | |
| ! | AGTAGTAAAAAGGGGGGTGT+CGG | + | chr6_4:81392397-81392416 | Msa0999430:CDS | 45.0% |
| TAGATGGGCCCCACTTGATA+AGG | - | chr6_4:81391206-81391225 | None:intergenic | 50.0% | |
| TGGGTAGCGAGAAAATTGCG+AGG | + | chr6_4:81391542-81391561 | Msa0999430:intron | 50.0% | |
| GTTGATATCTCCGGTGGCTA+AGG | + | chr6_4:81392060-81392079 | Msa0999430:CDS | 50.0% | |
| GTCAACTTCCTCGGAGTCAT+CGG | + | chr6_4:81392105-81392124 | Msa0999430:CDS | 50.0% | |
| TCAACTTCCTCGGAGTCATC+GGG | + | chr6_4:81392106-81392125 | Msa0999430:CDS | 50.0% | |
| ! | GGTGGCAAATTCGGTGAAGA+TGG | + | chr6_4:81392135-81392154 | Msa0999430:CDS | 50.0% |
| GCAGATGGAGTTTGGACAGA+TGG | + | chr6_4:81392288-81392307 | Msa0999430:CDS | 50.0% | |
| GGCGTGATTGTGAAGTTCCA+CGG | + | chr6_4:81392317-81392336 | Msa0999430:CDS | 50.0% | |
| TTGTGAAGTTCCACGGTTGC+CGG | + | chr6_4:81392324-81392343 | Msa0999430:CDS | 50.0% | |
| TAGATGGGCCCCACTTGATA+AGG | - | chr6_4:81391206-81391225 | None:intergenic | 50.0% | |
| TGGGTAGCGAGAAAATTGCG+AGG | + | chr6_4:81391542-81391561 | Msa0999430:intron | 50.0% | |
| GTTGATATCTCCGGTGGCTA+AGG | + | chr6_4:81392060-81392079 | Msa0999430:CDS | 50.0% | |
| GTCAACTTCCTCGGAGTCAT+CGG | + | chr6_4:81392105-81392124 | Msa0999430:CDS | 50.0% | |
| TCAACTTCCTCGGAGTCATC+GGG | + | chr6_4:81392106-81392125 | Msa0999430:CDS | 50.0% | |
| ! | GGTGGCAAATTCGGTGAAGA+TGG | + | chr6_4:81392135-81392154 | Msa0999430:CDS | 50.0% |
| GCAGATGGAGTTTGGACAGA+TGG | + | chr6_4:81392288-81392307 | Msa0999430:CDS | 50.0% | |
| GGCGTGATTGTGAAGTTCCA+CGG | + | chr6_4:81392317-81392336 | Msa0999430:CDS | 50.0% | |
| TTGTGAAGTTCCACGGTTGC+CGG | + | chr6_4:81392324-81392343 | Msa0999430:CDS | 50.0% | |
| ! | ACGACGGTTGATATCTCCGG+TGG | + | chr6_4:81392054-81392073 | Msa0999430:CDS | 55.0% |
| GATATCTCCGGTGGCTAAGG+CGG | + | chr6_4:81392063-81392082 | Msa0999430:CDS | 55.0% | |
| GGCAACGACGTCAACTTCCT+CGG | + | chr6_4:81392096-81392115 | Msa0999430:CDS | 55.0% | |
| TATGATGTCGTCGTCGTCGC+CGG | + | chr6_4:81392192-81392211 | Msa0999430:CDS | 55.0% | |
| ! | ACGACGGTTGATATCTCCGG+TGG | + | chr6_4:81392054-81392073 | Msa0999430:CDS | 55.0% |
| GATATCTCCGGTGGCTAAGG+CGG | + | chr6_4:81392063-81392082 | Msa0999430:CDS | 55.0% | |
| GGCAACGACGTCAACTTCCT+CGG | + | chr6_4:81392096-81392115 | Msa0999430:CDS | 55.0% | |
| TATGATGTCGTCGTCGTCGC+CGG | + | chr6_4:81392192-81392211 | Msa0999430:CDS | 55.0% | |
| TTCCTCGGAGTCATCGGGCA+TGG | + | chr6_4:81392111-81392130 | Msa0999430:CDS | 60.0% | |
| GGGCATGGCGGTGGCAAATT+CGG | + | chr6_4:81392126-81392145 | Msa0999430:CDS | 60.0% | |
| TGGTGGGGGCAGATGGAGTT+TGG | + | chr6_4:81392280-81392299 | Msa0999430:CDS | 60.0% | |
| !! | ACGGTTGCCGGTGTTGTCTC+CGG | + | chr6_4:81392336-81392355 | Msa0999430:CDS | 60.0% |
| TTCCTCGGAGTCATCGGGCA+TGG | + | chr6_4:81392111-81392130 | Msa0999430:CDS | 60.0% | |
| GGGCATGGCGGTGGCAAATT+CGG | + | chr6_4:81392126-81392145 | Msa0999430:CDS | 60.0% | |
| TGGTGGGGGCAGATGGAGTT+TGG | + | chr6_4:81392280-81392299 | Msa0999430:CDS | 60.0% | |
| !! | ACGGTTGCCGGTGTTGTCTC+CGG | + | chr6_4:81392336-81392355 | Msa0999430:CDS | 60.0% |
| GTCACAGCCGCCTTAGCCAC+CGG | - | chr6_4:81392073-81392092 | None:intergenic | 65.0% | |
| GGTGGCTAAGGCGGCTGTGA+CGG | + | chr6_4:81392072-81392091 | Msa0999430:CDS | 65.0% | |
| CTCGGAGTCATCGGGCATGG+CGG | + | chr6_4:81392114-81392133 | Msa0999430:CDS | 65.0% | |
| GGAGACAACACCGGCAACCG+TGG | - | chr6_4:81392337-81392356 | None:intergenic | 65.0% | |
| TCACCCCACATCATCGGCGC+CGG | - | chr6_4:81392364-81392383 | None:intergenic | 65.0% | |
| GTCACAGCCGCCTTAGCCAC+CGG | - | chr6_4:81392073-81392092 | None:intergenic | 65.0% | |
| GGTGGCTAAGGCGGCTGTGA+CGG | + | chr6_4:81392072-81392091 | Msa0999430:CDS | 65.0% | |
| CTCGGAGTCATCGGGCATGG+CGG | + | chr6_4:81392114-81392133 | Msa0999430:CDS | 65.0% | |
| GGAGACAACACCGGCAACCG+TGG | - | chr6_4:81392337-81392356 | None:intergenic | 65.0% | |
| TCACCCCACATCATCGGCGC+CGG | - | chr6_4:81392364-81392383 | None:intergenic | 65.0% | |
| GGCTAAGGCGGCTGTGACGG+CGG | + | chr6_4:81392075-81392094 | Msa0999430:CDS | 70.0% | |
| CGCCATGCCCGATGACTCCG+AGG | - | chr6_4:81392116-81392135 | None:intergenic | 70.0% | |
| GGAGTCATCGGGCATGGCGG+TGG | + | chr6_4:81392117-81392136 | Msa0999430:CDS | 70.0% | |
| GATGTCGTCGTCGTCGCCGG+AGG | + | chr6_4:81392195-81392214 | Msa0999430:CDS | 70.0% | |
| TCGTCGTCGTCGCCGGAGGT+TGG | + | chr6_4:81392199-81392218 | Msa0999430:CDS | 70.0% | |
| AGGTGGCTCCGGTGGGTGGT+TGG | + | chr6_4:81392260-81392279 | Msa0999430:CDS | 70.0% | |
| TGGCTCCGGTGGGTGGTTGG+TGG | + | chr6_4:81392263-81392282 | Msa0999430:CDS | 70.0% | |
| GGCTCCGGTGGGTGGTTGGT+GGG | + | chr6_4:81392264-81392283 | Msa0999430:CDS | 70.0% | |
| ! | GCTCCGGTGGGTGGTTGGTG+GGG | + | chr6_4:81392265-81392284 | Msa0999430:CDS | 70.0% |
| !! | CTCCGGTGGGTGGTTGGTGG+GGG | + | chr6_4:81392266-81392285 | Msa0999430:CDS | 70.0% |
| TGCCCCCACCAACCACCCAC+CGG | - | chr6_4:81392271-81392290 | None:intergenic | 70.0% | |
| !! | GGGTGGTTGGTGGGGGCAGA+TGG | + | chr6_4:81392273-81392292 | Msa0999430:CDS | 70.0% |
| GGCTAAGGCGGCTGTGACGG+CGG | + | chr6_4:81392075-81392094 | Msa0999430:CDS | 70.0% | |
| CGCCATGCCCGATGACTCCG+AGG | - | chr6_4:81392116-81392135 | None:intergenic | 70.0% | |
| GGAGTCATCGGGCATGGCGG+TGG | + | chr6_4:81392117-81392136 | Msa0999430:CDS | 70.0% | |
| GATGTCGTCGTCGTCGCCGG+AGG | + | chr6_4:81392195-81392214 | Msa0999430:CDS | 70.0% | |
| TCGTCGTCGTCGCCGGAGGT+TGG | + | chr6_4:81392199-81392218 | Msa0999430:CDS | 70.0% | |
| AGGTGGCTCCGGTGGGTGGT+TGG | + | chr6_4:81392260-81392279 | Msa0999430:CDS | 70.0% | |
| TGGCTCCGGTGGGTGGTTGG+TGG | + | chr6_4:81392263-81392282 | Msa0999430:CDS | 70.0% | |
| GGCTCCGGTGGGTGGTTGGT+GGG | + | chr6_4:81392264-81392283 | Msa0999430:CDS | 70.0% | |
| ! | GCTCCGGTGGGTGGTTGGTG+GGG | + | chr6_4:81392265-81392284 | Msa0999430:CDS | 70.0% |
| !! | CTCCGGTGGGTGGTTGGTGG+GGG | + | chr6_4:81392266-81392285 | Msa0999430:CDS | 70.0% |
| TGCCCCCACCAACCACCCAC+CGG | - | chr6_4:81392271-81392290 | None:intergenic | 70.0% | |
| !! | GGGTGGTTGGTGGGGGCAGA+TGG | + | chr6_4:81392273-81392292 | Msa0999430:CDS | 70.0% |
| TTTGCACCGTGCGCCGCCGC+AGG | + | chr6_4:81392237-81392256 | Msa0999430:CDS | 75.0% | |
| ACCGGAGCCACCTCCTGCGG+CGG | - | chr6_4:81392253-81392272 | None:intergenic | 75.0% | |
| CCCACCGGAGCCACCTCCTG+CGG | - | chr6_4:81392256-81392275 | None:intergenic | 75.0% | |
| CCGCAGGAGGTGGCTCCGGT+GGG | + | chr6_4:81392253-81392272 | Msa0999430:CDS | 75.0% | |
| CAGGAGGTGGCTCCGGTGGG+TGG | + | chr6_4:81392256-81392275 | Msa0999430:CDS | 75.0% | |
| !! | GCCGGTGTTGTCTCCGGCGC+CGG | + | chr6_4:81392342-81392361 | Msa0999430:CDS | 75.0% |
| ! | GCCGGCGCCGGAGACAACAC+CGG | - | chr6_4:81392346-81392365 | None:intergenic | 75.0% |
| !! | CACATCATCGGCGCCGGCGC+CGG | - | chr6_4:81392358-81392377 | None:intergenic | 75.0% |
| !! | GGCGCCGGCGCCGATGATGT+GGG | + | chr6_4:81392357-81392376 | Msa0999430:CDS | 75.0% |
| !! | GCGCCGGCGCCGATGATGTG+GGG | + | chr6_4:81392358-81392377 | Msa0999430:CDS | 75.0% |
| TTTGCACCGTGCGCCGCCGC+AGG | + | chr6_4:81392237-81392256 | Msa0999430:CDS | 75.0% | |
| ACCGGAGCCACCTCCTGCGG+CGG | - | chr6_4:81392253-81392272 | None:intergenic | 75.0% | |
| CCCACCGGAGCCACCTCCTG+CGG | - | chr6_4:81392256-81392275 | None:intergenic | 75.0% | |
| CCGCAGGAGGTGGCTCCGGT+GGG | + | chr6_4:81392253-81392272 | Msa0999430:CDS | 75.0% | |
| CAGGAGGTGGCTCCGGTGGG+TGG | + | chr6_4:81392256-81392275 | Msa0999430:CDS | 75.0% | |
| !! | GCCGGTGTTGTCTCCGGCGC+CGG | + | chr6_4:81392342-81392361 | Msa0999430:CDS | 75.0% |
| ! | GCCGGCGCCGGAGACAACAC+CGG | - | chr6_4:81392346-81392365 | None:intergenic | 75.0% |
| !! | CACATCATCGGCGCCGGCGC+CGG | - | chr6_4:81392358-81392377 | None:intergenic | 75.0% |
| !! | GGCGCCGGCGCCGATGATGT+GGG | + | chr6_4:81392357-81392376 | Msa0999430:CDS | 75.0% |
| !! | GCGCCGGCGCCGATGATGTG+GGG | + | chr6_4:81392358-81392377 | Msa0999430:CDS | 75.0% |
| ! | CCACCTCCTGCGGCGGCGCA+CGG | - | chr6_4:81392246-81392265 | None:intergenic | 80.0% |
| ! | GCCGCCGCAGGAGGTGGCTC+CGG | + | chr6_4:81392249-81392268 | Msa0999430:CDS | 80.0% |
| ! | GCCGCAGGAGGTGGCTCCGG+TGG | + | chr6_4:81392252-81392271 | Msa0999430:CDS | 80.0% |
| !!! | CGGCGCCGGCGCCGATGATG+TGG | + | chr6_4:81392356-81392375 | Msa0999430:CDS | 80.0% |
| ! | CCACCTCCTGCGGCGGCGCA+CGG | - | chr6_4:81392246-81392265 | None:intergenic | 80.0% |
| ! | GCCGCCGCAGGAGGTGGCTC+CGG | + | chr6_4:81392249-81392268 | Msa0999430:CDS | 80.0% |
| ! | GCCGCAGGAGGTGGCTCCGG+TGG | + | chr6_4:81392252-81392271 | Msa0999430:CDS | 80.0% |
| !!! | CGGCGCCGGCGCCGATGATG+TGG | + | chr6_4:81392356-81392375 | Msa0999430:CDS | 80.0% |
| ! | GCACCGTGCGCCGCCGCAGG+AGG | + | chr6_4:81392240-81392259 | Msa0999430:CDS | 85.0% |
| ! | CCGTGCGCCGCCGCAGGAGG+TGG | + | chr6_4:81392243-81392262 | Msa0999430:CDS | 85.0% |
| ! | GCACCGTGCGCCGCCGCAGG+AGG | + | chr6_4:81392240-81392259 | Msa0999430:CDS | 85.0% |
| ! | CCGTGCGCCGCCGCAGGAGG+TGG | + | chr6_4:81392243-81392262 | Msa0999430:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 81391123 | 81392495 | 81391123 | ID=Msa0999430;Name=Msa0999430 |
| chr6_4 | mRNA | 81391123 | 81392495 | 81391123 | ID=Msa0999430-mRNA-1;Parent=Msa0999430;Name=Msa0999430-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|351 |
| chr6_4 | exon | 81391123 | 81391332 | 81391123 | ID=Msa0999430-mRNA-1:exon:15558;Parent=Msa0999430-mRNA-1 |
| chr6_4 | exon | 81391650 | 81392495 | 81391650 | ID=Msa0999430-mRNA-1:exon:15559;Parent=Msa0999430-mRNA-1 |
| chr6_4 | CDS | 81391123 | 81391332 | 81391123 | ID=Msa0999430-mRNA-1:cds;Parent=Msa0999430-mRNA-1 |
| chr6_4 | CDS | 81391650 | 81392495 | 81391650 | ID=Msa0999430-mRNA-1:cds;Parent=Msa0999430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
