AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0312570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0312570 MtrunA17_Chr2g0282001 91.202 341 30 0 1 341 1 341 0.0 651
Msa0312570 MtrunA17_Chr2g0281991 86.804 341 45 0 1 341 2 342 0.0 615
Msa0312570 MtrunA17_Chr2g0282011 83.871 341 55 0 1 341 2 342 0.0 570
Msa0312570 MtrunA17_Chr7g0275521 59.942 342 132 4 1 339 1 340 4.75e-145 413
Msa0312570 MtrunA17_Chr1g0155411 34.524 336 199 8 7 339 8 325 2.10e-55 184
Msa0312570 MtrunA17_Chr1g0155431 33.945 327 195 8 7 330 8 316 1.01e-54 182
Msa0312570 MtrunA17_Chr7g0245731 34.024 338 195 9 2 332 53 369 5.47e-54 181
Msa0312570 MtrunA17_Chr7g0245741 34.018 341 197 9 6 339 7 326 1.04e-53 179
Msa0312570 MtrunA17_Chr7g0245671 34.104 346 193 10 6 339 7 329 1.04e-52 176
Msa0312570 MtrunA17_Chr4g0048961 31.642 335 215 7 6 337 13 336 1.23e-52 177
Msa0312570 MtrunA17_Chr7g0245691 33.819 343 207 8 2 339 3 330 1.74e-52 176
Msa0312570 MtrunA17_Chr7g0245641 33.815 346 194 10 6 339 44 366 2.30e-52 177
Msa0312570 MtrunA17_Chr7g0245631 32.558 344 206 9 2 339 3 326 1.09e-49 169
Msa0312570 MtrunA17_Chr4g0042101 29.446 343 211 7 4 332 21 346 5.64e-43 152
Msa0312570 MtrunA17_Chr4g0010991 31.563 339 209 10 7 339 8 329 7.62e-41 145
Msa0312570 MtrunA17_Chr7g0245711 30.976 297 178 8 44 334 8 283 5.69e-38 137
Msa0312570 MtrunA17_Chr3g0077231 31.834 289 178 5 7 295 6 275 1.33e-35 131
Msa0312570 MtrunA17_Chr5g0431311 30.792 341 204 11 7 340 5 320 4.16e-35 130
Msa0312570 MtrunA17_Chr2g0331211 29.464 336 217 7 6 340 4 320 5.01e-35 130
Msa0312570 MtrunA17_Chr3g0106111 30.088 339 203 10 7 337 5 317 1.24e-34 129
Msa0312570 MtrunA17_Chr5g0423551 28.319 339 212 9 8 339 5 319 1.30e-33 126
Msa0312570 MtrunA17_Chr3g0077221 31.399 293 174 7 7 295 10 279 1.08e-32 124
Msa0312570 MtrunA17_Chr4g0039321 31.399 293 174 7 7 295 9 278 7.31e-31 119
Msa0312570 MtrunA17_Chr2g0333781 30.409 342 201 11 7 341 20 331 5.67e-29 114
Msa0312570 MtrunA17_Chr4g0039311 30.690 290 180 9 7 295 11 280 1.22e-28 113
Msa0312570 MtrunA17_Chr4g0001321 28.107 338 214 11 7 341 17 328 4.94e-28 111
Msa0312570 MtrunA17_Chr8g0364051 28.529 333 209 8 7 334 8 316 5.65e-28 111
Msa0312570 MtrunA17_Chr4g0002661 29.794 339 206 13 6 339 12 323 8.94e-28 110
Msa0312570 MtrunA17_Chr8g0363831 30.137 292 178 8 7 295 9 277 6.59e-26 105
Msa0312570 MtrunA17_Chr4g0002961 30.088 339 205 13 6 339 12 323 2.96e-25 103
Msa0312570 MtrunA17_Chr2g0291541 30.625 320 191 12 7 318 10 306 8.71e-24 100
Msa0312570 MtrunA17_Chr3g0133771 26.523 279 161 13 6 279 3 242 4.99e-13 68.9
Msa0312570 MtrunA17_Chr5g0411071 24.623 199 135 6 4 202 9 192 5.31e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0312570 AT5G42800.1 32.249 338 208 7 7 341 8 327 1.77e-51 175
Msa0312570 AT1G61720.1 32.219 329 213 6 4 331 10 329 1.80e-49 169
Msa0312570 AT2G45400.1 33.235 340 205 9 7 339 40 364 3.05e-47 164
Msa0312570 AT4G27250.1 32.036 334 206 8 8 330 14 337 1.12e-46 162
Msa0312570 AT4G27250.2 32.335 334 195 10 8 330 14 327 1.36e-44 156
Msa0312570 AT2G45400.2 34.602 289 173 7 7 292 40 315 1.07e-43 153
Msa0312570 AT1G09510.1 35.034 294 162 9 7 295 8 277 1.45e-38 140
Msa0312570 AT4G35420.1 29.254 335 218 7 6 340 7 322 1.24e-36 135
Msa0312570 AT2G45400.4 36.073 219 131 4 7 222 40 252 1.02e-35 130
Msa0312570 AT2G45400.3 31.595 326 197 10 19 339 3 307 1.48e-35 131
Msa0312570 AT1G09500.3 33.446 296 165 9 7 295 8 278 2.16e-35 130
Msa0312570 AT1G09500.1 33.446 296 165 9 7 295 8 278 6.64e-35 130
Msa0312570 AT1G66800.1 34.589 292 152 9 7 290 8 268 7.06e-35 130
Msa0312570 AT5G58490.1 30.904 343 201 12 7 340 9 324 1.74e-34 129
Msa0312570 AT5G19440.1 29.167 336 210 8 7 337 10 322 2.23e-33 126
Msa0312570 AT1G68540.1 29.794 339 207 9 9 339 6 321 4.16e-33 125
Msa0312570 AT1G51410.1 29.866 298 190 6 2 299 4 282 5.05e-33 125
Msa0312570 AT1G09480.2 31.271 291 167 6 7 290 8 272 1.51e-31 121
Msa0312570 AT1G09490.1 31.922 307 173 9 7 304 8 287 3.14e-31 120
Msa0312570 AT1G09480.1 31.271 291 167 6 7 290 55 319 3.48e-31 121
Msa0312570 AT1G76470.1 29.762 336 215 9 6 339 6 322 1.34e-30 119
Msa0312570 AT1G80820.1 30.725 345 196 12 7 341 8 319 1.84e-30 118
Msa0312570 AT1G25460.1 29.254 335 212 10 9 339 6 319 2.18e-28 112
Msa0312570 AT2G02400.1 30.000 330 197 12 7 331 6 306 7.82e-28 111
Msa0312570 AT1G15950.3 30.205 341 201 11 7 340 13 323 9.53e-28 111
Msa0312570 AT1G15950.1 30.205 341 201 11 7 340 13 323 9.53e-28 111
Msa0312570 AT1G15950.2 30.094 319 187 10 7 318 13 302 1.84e-26 107
Msa0312570 AT1G80820.2 31.081 296 165 10 7 295 8 271 2.36e-26 106
Msa0312570 AT1G15950.4 30.537 298 174 9 7 300 13 281 2.77e-25 103
Msa0312570 AT1G15950.6 30.717 293 170 9 7 295 13 276 8.93e-25 102
Msa0312570 AT1G15950.5 30.272 294 172 9 7 296 13 277 2.69e-24 100
Msa0312570 AT2G33590.1 28.657 335 208 14 6 335 8 316 3.85e-24 101
Msa0312570 AT2G33600.1 27.711 332 215 11 6 335 8 316 1.82e-20 90.9
Msa0312570 AT1G09500.2 29.924 264 153 9 39 295 6 244 4.59e-20 89.4
Msa0312570 AT1G09490.2 27.957 279 157 10 39 304 9 256 1.82e-16 79.0
Msa0312570 AT4G33360.2 25.524 286 151 11 4 275 12 249 3.71e-14 72.4
Msa0312570 AT4G33360.1 24.476 286 154 9 4 275 12 249 4.95e-14 72.4
Msa0312570 AT4G33360.3 24.648 284 152 9 6 275 2 237 7.28e-14 72.0
Msa0312570 AT2G23910.1 22.615 283 191 10 4 285 8 263 5.71e-13 68.9
Msa0312570 AT2G23910.2 22.615 283 191 10 4 285 8 263 6.22e-13 68.6
Msa0312570 AT2G23910.3 22.615 283 191 10 4 285 8 263 6.66e-13 68.6
Msa0312570 AT4G30470.1 25.000 244 153 10 4 238 8 230 1.88e-12 67.4

Find 94 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGCACAAAAGTTTATATT+AGG 0.153694 2_4:-7726065 Msa0312570:three_prime_UTR
GTCAACCTTCATTTGGTTTC+CGG 0.204199 2_4:-7726449 Msa0312570:three_prime_UTR
TTCTCTTTCAAATTGAATTC+TGG 0.212502 2_4:+7727447 None:intergenic
TAGATTCTCGTGATTATATA+TGG 0.284496 2_4:-7726168 Msa0312570:three_prime_UTR
AATGCATTATCTAGTAAATA+TGG 0.292838 2_4:+7731369 None:intergenic
TCAACAAAGCTCATAGATAA+AGG 0.298417 2_4:-7726603 Msa0312570:CDS
TTAGTATTACGTTGTTGATA+TGG 0.299781 2_4:-7726415 Msa0312570:three_prime_UTR
TCTCCTAGTCAAGAAGCTTT+TGG 0.309271 2_4:-7731218 Msa0312570:CDS
ACAGGTGGTGCTGGTTATAT+TGG 0.319946 2_4:-7731244 Msa0312570:CDS
AATTTACAGCCTTGAATTGC+AGG 0.325269 2_4:+7730327 None:intergenic
AGCTGCAAGGTGTGTGTTAC+AGG 0.325911 2_4:-7731262 Msa0312570:CDS
GTGCACAAAAGTTTATATTA+GGG 0.331694 2_4:-7726064 Msa0312570:three_prime_UTR
ACAAATCACATATCTCTCTT+AGG 0.341922 2_4:+7726142 None:intergenic
CATCTTGAGATCATATTTGT+AGG 0.350926 2_4:+7726575 None:intergenic
AGTTATGGTAAAGATGAAAA+TGG 0.352631 2_4:-7727768 Msa0312570:CDS
TGTGTTATACTAATTGATTA+TGG 0.353689 2_4:-7726323 Msa0312570:three_prime_UTR
ACTTCATTGATGAAACTTGT+TGG 0.365623 2_4:-7729859 Msa0312570:CDS
AGAGAATTATTAACGAGTTA+TGG 0.366349 2_4:-7727783 Msa0312570:CDS
TATATTGGTCAACCTTCATT+TGG 0.382410 2_4:-7726456 Msa0312570:three_prime_UTR
ATAATCACTGCAACACTTGC+GGG 0.395620 2_4:+7727675 None:intergenic
AGAATCAGTTTGATGTAGAT+AGG 0.396421 2_4:+7730284 None:intergenic
ACGAGAATCTAGAATGTGAT+TGG 0.413209 2_4:+7726180 None:intergenic
GCCTCTCAGAAAGCTGACTT+TGG 0.417578 2_4:+7730416 None:intergenic
TCCTCTCACCGCTTTCCATA+AGG 0.418685 2_4:-7729813 Msa0312570:intron
ACTCTTGGTGTTGGCCTAGT+GGG 0.433402 2_4:-7727723 Msa0312570:CDS
CGAGAATCTAGAATGTGATT+GGG 0.440617 2_4:+7726181 None:intergenic
TCCACATGCAAATACAAGAT+TGG 0.441027 2_4:-7730391 Msa0312570:CDS
TATATAATGATGGATCATCT+TGG 0.446140 2_4:-7726505 Msa0312570:exon
AGTCAAACAGAGCAATCAAA+TGG 0.449477 2_4:-7726629 Msa0312570:CDS
CAACAAAGCTCATAGATAAA+GGG 0.450243 2_4:-7726602 Msa0312570:CDS
TTCTCTCTCTGCCAATGTCT+TGG 0.450541 2_4:+7727800 None:intergenic
ATATAATGATGGATCATCTT+GGG 0.453225 2_4:-7726504 Msa0312570:exon
TCTACATCAAACTGATTCTC+AGG 0.459043 2_4:-7730280 Msa0312570:intron
GAGGTGGTTACTCTTGGTGT+TGG 0.474061 2_4:-7727732 Msa0312570:CDS
TGAGAGGAAGGTGGAGACTC+TGG 0.474386 2_4:+7729828 None:intergenic
GCTTCTCCACTGAAGGATGA+TGG 0.480245 2_4:-7729896 Msa0312570:CDS
GGAATTGAGGTGGTTACTCT+TGG 0.482358 2_4:-7727738 Msa0312570:CDS
AATACTAATATCCACTTGTC+CGG 0.485305 2_4:+7726430 None:intergenic
AAGTTCTTAGAAGATATAGA+TGG 0.488977 2_4:-7727612 Msa0312570:CDS
GGTAAAGATGAAAATGGAAA+TGG 0.489339 2_4:-7727762 Msa0312570:CDS
ATAGAGGAAGCAGCAGTAGC+AGG 0.492362 2_4:-7729995 Msa0312570:CDS
AGAGACCCCTCATATTTACT+AGG 0.493361 2_4:-7731398 None:intergenic
GTCAAATGCGGAAGAAGGAC+GGG 0.508730 2_4:-7726537 Msa0312570:CDS
AGTTAGATTATTATCAGTGA+TGG 0.510789 2_4:-7731290 Msa0312570:exon
TTTCCAAAAGCTTCTTGACT+AGG 0.510906 2_4:+7731215 None:intergenic
GTGTGTGTTACAGGTGGTGC+TGG 0.512366 2_4:-7731253 Msa0312570:CDS
TGTCAAATGCGGAAGAAGGA+CGG 0.517919 2_4:-7726538 Msa0312570:CDS
CTTCTCCACTGAAGGATGAT+GGG 0.521350 2_4:-7729895 Msa0312570:CDS
GGAAAGCGGTGAGAGGAAGG+TGG 0.525033 2_4:+7729819 None:intergenic
AGACCATCGTTGATTACCTA+CGG 0.530299 2_4:+7726385 None:intergenic
ATAGTGTCAAATGCGGAAGA+AGG 0.537899 2_4:-7726542 Msa0312570:CDS
TACTCTTGGTGTTGGCCTAG+TGG 0.540652 2_4:-7727724 Msa0312570:CDS
GTCAAACAGAGCAATCAAAT+GGG 0.548805 2_4:-7726628 Msa0312570:CDS
TCATTTGGTTTCCGGACAAG+TGG 0.553695 2_4:-7726441 Msa0312570:three_prime_UTR
AAAGATGAAAATGGAAATGG+TGG 0.554971 2_4:-7727759 Msa0312570:CDS
TGTTTATTCACTATTGTGTG+TGG 0.555177 2_4:-7731347 Msa0312570:five_prime_UTR
GAATCAGTTTGATGTAGATA+GGG 0.556532 2_4:+7730285 None:intergenic
GCGATCTTAGTATATAATGA+TGG 0.557596 2_4:-7726515 Msa0312570:exon
GATTATTATCAGTGATGGAA+AGG 0.557631 2_4:-7731285 Msa0312570:exon
GGTTGCTGCTTCTCCACTGA+AGG 0.558373 2_4:-7729903 Msa0312570:CDS
TATGGAAAGCGGTGAGAGGA+AGG 0.562621 2_4:+7729816 None:intergenic
ACATCATCAATGTGGACTAG+TGG 0.564824 2_4:+7727582 None:intergenic
ACCAATCTTGTATTTGCATG+TGG 0.567821 2_4:+7730390 None:intergenic
CTTGGTGTTGGCCTAGTGGG+AGG 0.579025 2_4:-7727720 Msa0312570:CDS
CTTGTCCGGAAACCAAATGA+AGG 0.581533 2_4:+7726444 None:intergenic
GATAATCACTGCAACACTTG+CGG 0.586260 2_4:+7727674 None:intergenic
GAAGAGCATCTCCTCCCACT+AGG 0.587729 2_4:+7727709 None:intergenic
AATACTCAAGTTTCTGAGAG+TGG 0.592377 2_4:+7731174 None:intergenic
GAGAATCTAGAATGTGATTG+GGG 0.592559 2_4:+7726182 None:intergenic
AGTTTGATGTAGATAGGGAG+TGG 0.593081 2_4:+7730290 None:intergenic
AAATGGAAATGGTGGAATTG+AGG 0.596604 2_4:-7727751 Msa0312570:CDS
GTACGCTTATTCCAAGACAT+TGG 0.600674 2_4:-7727811 Msa0312570:CDS
AGTATTTACCTTATGGAAAG+CGG 0.602744 2_4:+7729805 None:intergenic
ACCTTATGGAAAGCGGTGAG+AGG 0.612095 2_4:+7729812 None:intergenic
CCACTGAAGGATGATGGGAG+TGG 0.616498 2_4:-7729890 Msa0312570:CDS
GGAAGGTGGAGACTCTGGAG+AGG 0.622635 2_4:+7729833 None:intergenic
AGGACAGTTTAAGAGCATAG+AGG 0.626813 2_4:-7730011 Msa0312570:intron
TCAAGTTTCTGAGAGTGGCA+TGG 0.630524 2_4:+7731179 None:intergenic
CAGTGGAGAAGCAGCAACCA+CGG 0.636125 2_4:+7729907 None:intergenic
TGCAAGGTGTGTGTTACAGG+TGG 0.636996 2_4:-7731259 Msa0312570:CDS
CCACTCCCATCATCCTTCAG+TGG 0.640324 2_4:+7729890 None:intergenic
GCGAGAAGACTGATATACAC+TGG 0.641046 2_4:-7729932 Msa0312570:CDS
GTAGATAGGGAGTGGCAACA+TGG 0.645401 2_4:+7730298 None:intergenic
GACCCCTCATATTTACTAGG+TGG 0.648898 2_4:-7731395 None:intergenic
TTGATATGGAGACACTCCGT+AGG 0.650270 2_4:-7726401 Msa0312570:three_prime_UTR
AGTGATGGAAAGGAGCTGCA+AGG 0.651284 2_4:-7731275 Msa0312570:exon
ATATGTTAGATCATTGTGAG+TGG 0.657002 2_4:-7731316 Msa0312570:five_prime_UTR
TCCAAAGTCAGCTTTCTGAG+AGG 0.659613 2_4:-7730417 Msa0312570:CDS
TGGAAATGGTGGAATTGAGG+TGG 0.673716 2_4:-7727748 Msa0312570:CDS
CTTCACAAACATCATCAATG+TGG 0.701450 2_4:+7727574 None:intergenic
AGAATCTAGAATGTGATTGG+GGG 0.723264 2_4:+7726183 None:intergenic
ACTCCGTAGGTAATCAACGA+TGG 0.726822 2_4:-7726388 Msa0312570:three_prime_UTR
CTAGACGATAGTGTCAAATG+CGG 0.728283 2_4:-7726549 Msa0312570:CDS
ACTGATATACACTGGCACCG+TGG 0.763689 2_4:-7729924 Msa0312570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAATTAAATATAAA+CGG - chr2_4:7726359-7726378 Msa0312570:three_prime_UTR 0.0%
!! CTAAAAAAAATTGAAAAAAA+TGG + chr2_4:7726291-7726310 None:intergenic 10.0%
!! CAAAAATTAACTTAAAAATA+GGG + chr2_4:7726531-7726550 None:intergenic 10.0%
!! ACAAAAATTAACTTAAAAAT+AGG + chr2_4:7726532-7726551 None:intergenic 10.0%
!!! TAAAAAATTCTAATTTTTTG+GGG + chr2_4:7726606-7726625 None:intergenic 10.0%
!!! GTTAAAAAATTCTAATTTTT+TGG + chr2_4:7726692-7726711 None:intergenic 10.0%
!!! TGTTAAAAAATTCTAATTTT+TGG - chr2_4:7726691-7726710 Msa0312570:intron 10.0%
!!! GTTAAAAAATTCTAATTTTT+GGG - chr2_4:7726692-7726711 Msa0312570:intron 10.0%
!! CAAATAATTAAAAGAATAAA+AGG + chr2_4:7728222-7728241 None:intergenic 10.0%
!! TAAATGGTAAAATAAAATTT+AGG - chr2_4:7728708-7728727 Msa0312570:intron 10.0%
!! AAATGGTAAAATAAAATTTA+GGG - chr2_4:7728709-7728728 Msa0312570:intron 10.0%
!! TGTTAAAAAAATCATTAAAT+GGG + chr2_4:7728981-7729000 None:intergenic 10.0%
!! CTAAATAAAAAAAAAACAAT+AGG - chr2_4:7731020-7731039 Msa0312570:intron 10.0%
!! TAAAAAAATAAATAAGGTAA+TGG - chr2_4:7731091-7731110 Msa0312570:intron 10.0%
!! AAAAAATTGAAAAAAATGGA+TGG + chr2_4:7726287-7726306 None:intergenic 15.0%
!!! ATAAGGGTTAAATATATTTT+TGG - chr2_4:7726413-7726432 Msa0312570:three_prime_UTR 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG + chr2_4:7726500-7726519 None:intergenic 15.0%
!!! AAAAAATTCTAATTTTTTGG+GGG + chr2_4:7726605-7726624 None:intergenic 15.0%
!!! ATGAATTTTTATATGTTTGA+CGG + chr2_4:7726656-7726675 None:intergenic 15.0%
!!! TGAAAATGGAAAATTTTATA+GGG - chr2_4:7726808-7726827 Msa0312570:intron 15.0%
!!! TTAGAGTTTTTTTATACTAA+GGG + chr2_4:7726911-7726930 None:intergenic 15.0%
!!! ATTAGAGTTTTTTTATACTA+AGG + chr2_4:7726912-7726931 None:intergenic 15.0%
!! AAGAGTAATAATCAATATTT+GGG + chr2_4:7727137-7727156 None:intergenic 15.0%
!! AAAGAGTAATAATCAATATT+TGG + chr2_4:7727138-7727157 None:intergenic 15.0%
!! TATATATAGTATTTACCTTA+TGG + chr2_4:7727589-7727608 None:intergenic 15.0%
!!! TTAAAGGTTAAATATGTTTT+TGG + chr2_4:7727682-7727701 None:intergenic 15.0%
!! ATTCTATAAAAAAAAACGTT+TGG + chr2_4:7727766-7727785 None:intergenic 15.0%
!! ATAGTCACAAAATATTAATA+GGG + chr2_4:7728292-7728311 None:intergenic 15.0%
!! TATAGTCACAAAATATTAAT+AGG + chr2_4:7728293-7728312 None:intergenic 15.0%
!! GAAAATTCAAAGTTATAATA+GGG - chr2_4:7728584-7728603 Msa0312570:intron 15.0%
!!! TTTTCAACAAAATAATGATA+AGG - chr2_4:7728616-7728635 Msa0312570:intron 15.0%
!! CTGTTAAAAAAATCATTAAA+TGG + chr2_4:7728982-7729001 None:intergenic 15.0%
!! AAAAAAAAAAACTTTAGACA+TGG + chr2_4:7729223-7729242 None:intergenic 15.0%
!!! GTCTAAAGTTTTTTTTTTTT+TGG - chr2_4:7729224-7729243 Msa0312570:intron 15.0%
!!! TAAAGTTTTTTTTTTTTTGG+AGG - chr2_4:7729227-7729246 Msa0312570:intron 15.0%
!! TAAAGTTTACAAATAGTTTA+TGG - chr2_4:7730139-7730158 Msa0312570:intron 15.0%
!! CTTGCATAAAAAAATAAATA+AGG - chr2_4:7731085-7731104 Msa0312570:intron 15.0%
!! AATGCATTATCTAGTAAATA+TGG + chr2_4:7726018-7726037 None:intergenic 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG + chr2_4:7726868-7726887 None:intergenic 20.0%
!!! AGAAAAGTTGGTATATTTAT+AGG + chr2_4:7726441-7726460 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG + chr2_4:7726501-7726520 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG - chr2_4:7726504-7726523 Msa0312570:exon 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG - chr2_4:7726776-7726795 Msa0312570:intron 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG - chr2_4:7726777-7726796 Msa0312570:intron 20.0%
!!! AAATTTTCCATTTTCACTTT+TGG + chr2_4:7726804-7726823 None:intergenic 20.0%
!!! GTGAAAATGGAAAATTTTAT+AGG - chr2_4:7726807-7726826 Msa0312570:intron 20.0%
!!! AAGTTGAAAGAAAATTTTAG+AGG - chr2_4:7726836-7726855 Msa0312570:intron 20.0%
!!! AGTTGAAAGAAAATTTTAGA+GGG - chr2_4:7726837-7726856 Msa0312570:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG - chr2_4:7726868-7726887 Msa0312570:intron 20.0%
!!! AATTCATTTATTGATTTCAG+AGG - chr2_4:7726939-7726958 Msa0312570:intron 20.0%
!! ATGGCTAATGATAAAATTAA+AGG + chr2_4:7727698-7727717 None:intergenic 20.0%
!!! TTTTTTTTTGGTAGATGTTT+GGG + chr2_4:7727734-7727753 None:intergenic 20.0%
!!! TTTTTTTTTTGGTAGATGTT+TGG + chr2_4:7727735-7727754 None:intergenic 20.0%
!! AACATCTACCAAAAAAAAAA+AGG - chr2_4:7727735-7727754 Msa0312570:CDS 20.0%
!! ACATCTACCAAAAAAAAAAA+GGG - chr2_4:7727736-7727755 Msa0312570:CDS 20.0%
!! TGAAGAAAAAAAAAAGTTTG+TGG + chr2_4:7727980-7727999 None:intergenic 20.0%
!! AAAAAGATAGAAATATCAAG+CGG + chr2_4:7728017-7728036 None:intergenic 20.0%
!!! ATTTTCCTATGAAATCTTTA+GGG + chr2_4:7728570-7728589 None:intergenic 20.0%
!!! AATTTTCCTATGAAATCTTT+AGG + chr2_4:7728571-7728590 None:intergenic 20.0%
!! GGAAAATTCAAAGTTATAAT+AGG - chr2_4:7728583-7728602 Msa0312570:intron 20.0%
!! GTTATTCATAAGTAATTTCT+TGG - chr2_4:7728888-7728907 Msa0312570:intron 20.0%
!!! ATTTTTTTAACAGTCTAGTT+TGG - chr2_4:7728989-7729008 Msa0312570:intron 20.0%
!!! AAATATCGAATTGTAACTTT+TGG - chr2_4:7729421-7729440 Msa0312570:intron 20.0%
!! ATACTATATGTTGTATAAGT+TGG + chr2_4:7729989-7730008 None:intergenic 20.0%
!! TGTTATATATGGATGTTAAA+TGG - chr2_4:7730468-7730487 Msa0312570:intron 20.0%
!!! AATGGAGGTATAAAAATTAA+AGG - chr2_4:7730486-7730505 Msa0312570:intron 20.0%
!! GCAAGTTAAAAAATGTATAT+TGG - chr2_4:7730913-7730932 Msa0312570:intron 20.0%
!! TGTGTTATACTAATTGATTA+TGG - chr2_4:7731061-7731080 Msa0312570:intron 20.0%
! AGTTAGATTATTATCAGTGA+TGG - chr2_4:7726094-7726113 Msa0312570:three_prime_UTR 25.0%
! AGAAAAAAAAAATGCAGAGA+GGG + chr2_4:7726254-7726273 None:intergenic 25.0%
! AAGAAAAAAAAAATGCAGAG+AGG + chr2_4:7726255-7726274 None:intergenic 25.0%
! AAATTGAAAAAAATGGATGG+TGG + chr2_4:7726284-7726303 None:intergenic 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + chr2_4:7726471-7726490 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr2_4:7726472-7726491 None:intergenic 25.0%
!!! CGAAAAGTTGGTATATTTAT+AGG - chr2_4:7726867-7726886 Msa0312570:intron 25.0%
!! CTAAGGGTTAAATATGTTTT+TGG + chr2_4:7726895-7726914 None:intergenic 25.0%
!! TCTATAAACCAGATGATTTT+TGG - chr2_4:7727034-7727053 Msa0312570:intron 25.0%
!! ATTACTCTTTTCTTTCCTTT+TGG - chr2_4:7727148-7727167 Msa0312570:intron 25.0%
!! ATTTCAAGTACATAACCAAA+AGG + chr2_4:7727166-7727185 None:intergenic 25.0%
! ACTTTCTCACACAATAATAA+TGG - chr2_4:7727615-7727634 Msa0312570:CDS 25.0%
! TTATCATTAGCCATACATAA+AGG - chr2_4:7727704-7727723 Msa0312570:CDS 25.0%
! TATCATTAGCCATACATAAA+GGG - chr2_4:7727705-7727724 Msa0312570:CDS 25.0%
! TAGAATACGTTTATGTGAAT+TGG - chr2_4:7727780-7727799 Msa0312570:CDS 25.0%
! AGAATACGTTTATGTGAATT+GGG - chr2_4:7727781-7727800 Msa0312570:CDS 25.0%
!!! CTTTTTTTTTTCTTCAGAAG+AGG - chr2_4:7727984-7728003 Msa0312570:intron 25.0%
! TGTTAACACATCCTAAATTA+AGG - chr2_4:7728075-7728094 Msa0312570:intron 25.0%
! GTTAACACATCCTAAATTAA+GGG - chr2_4:7728076-7728095 Msa0312570:intron 25.0%
! GTATGTTTAACCCTTAATTT+AGG + chr2_4:7728089-7728108 None:intergenic 25.0%
! ATTAAGGGTTAAACATACAA+AGG - chr2_4:7728091-7728110 Msa0312570:intron 25.0%
! TTAAGGGTTAAACATACAAA+GGG - chr2_4:7728092-7728111 Msa0312570:intron 25.0%
!! TGACTAATGACATTAGTTTA+CGG - chr2_4:7728130-7728149 Msa0312570:intron 25.0%
! ACACAACATGTTATTATTCT+AGG - chr2_4:7728312-7728331 Msa0312570:intron 25.0%
!! ATGTTATTATTCTAGGTTGA+GGG - chr2_4:7728319-7728338 Msa0312570:intron 25.0%
! TTTGTGGGAAGAAAAAAAAT+GGG + chr2_4:7728930-7728949 None:intergenic 25.0%
! ATTTGTGGGAAGAAAAAAAA+TGG + chr2_4:7728931-7728950 None:intergenic 25.0%
! TATGTGCTTATTTGATCTAA+GGG - chr2_4:7729141-7729160 Msa0312570:intron 25.0%
! AAAAAAAACTTTAGACATGG+TGG + chr2_4:7729220-7729239 None:intergenic 25.0%
! CACATATTGGATGTAAATAT+AGG + chr2_4:7729257-7729276 None:intergenic 25.0%
! CTATATTTACATCCAATATG+TGG - chr2_4:7729255-7729274 Msa0312570:intron 25.0%
!!! TGATTTCAAGTTTAATATCG+AGG + chr2_4:7729295-7729314 None:intergenic 25.0%
! AAATCAATATGACACATCTA+TGG - chr2_4:7729382-7729401 Msa0312570:intron 25.0%
! AGAGAATTATTAACGAGTTA+TGG - chr2_4:7729601-7729620 Msa0312570:intron 25.0%
! AGTTATGGTAAAGATGAAAA+TGG - chr2_4:7729616-7729635 Msa0312570:intron 25.0%
! AAGTTCTTAGAAGATATAGA+TGG - chr2_4:7729772-7729791 Msa0312570:intron 25.0%
!! ATCTATCAATGACAGATTTT+TGG - chr2_4:7729858-7729877 Msa0312570:CDS 25.0%
! TTCTCTTTCAAATTGAATTC+TGG + chr2_4:7729940-7729959 None:intergenic 25.0%
! TATAAGAGATTTCTCTTTGT+AGG + chr2_4:7730035-7730054 None:intergenic 25.0%
! TCTTTAACATGTGTCATAAA+AGG - chr2_4:7730271-7730290 Msa0312570:intron 25.0%
! CATATATAACAAAGCATGAT+TGG + chr2_4:7730459-7730478 None:intergenic 25.0%
!! CAATCATGCTTTGTTATATA+TGG - chr2_4:7730457-7730476 Msa0312570:intron 25.0%
! TATATATGGATGTTAAATGG+AGG - chr2_4:7730471-7730490 Msa0312570:intron 25.0%
! AAATCTTAGTATGATTCACA+AGG - chr2_4:7730650-7730669 Msa0312570:intron 25.0%
!! AATATTTGCCATCTGATTTT+AGG - chr2_4:7730722-7730741 Msa0312570:intron 25.0%
!!! TATATAATGATGGATCATCT+TGG - chr2_4:7730879-7730898 Msa0312570:intron 25.0%
!!! ATATAATGATGGATCATCTT+GGG - chr2_4:7730880-7730899 Msa0312570:intron 25.0%
! TTAGTATTACGTTGTTGATA+TGG - chr2_4:7730969-7730988 Msa0312570:intron 25.0%
! TAGATTCTCGTGATTATATA+TGG - chr2_4:7731216-7731235 Msa0312570:CDS 25.0%
! AGCTAAAATACCAAAAAGAT+AGG + chr2_4:7731268-7731287 None:intergenic 25.0%
! TGTGCACAAAAGTTTATATT+AGG - chr2_4:7731319-7731338 Msa0312570:five_prime_UTR 25.0%
! GTGCACAAAAGTTTATATTA+GGG - chr2_4:7731320-7731339 Msa0312570:five_prime_UTR 25.0%
TGTTTATTCACTATTGTGTG+TGG - chr2_4:7726037-7726056 Msa0312570:three_prime_UTR 30.0%
ATATGTTAGATCATTGTGAG+TGG - chr2_4:7726068-7726087 Msa0312570:three_prime_UTR 30.0%
! GATTATTATCAGTGATGGAA+AGG - chr2_4:7726099-7726118 Msa0312570:three_prime_UTR 30.0%
! TATGCAGTGCTATTAGTATA+AGG - chr2_4:7726396-7726415 Msa0312570:three_prime_UTR 30.0%
! ATGCAGTGCTATTAGTATAA+GGG - chr2_4:7726397-7726416 Msa0312570:three_prime_UTR 30.0%
TTATAGGGACTAAAAGTTGA+AGG + chr2_4:7726823-7726842 None:intergenic 30.0%
GAATCAGTTTGATGTAGATA+GGG + chr2_4:7727102-7727121 None:intergenic 30.0%
AGAATCAGTTTGATGTAGAT+AGG + chr2_4:7727103-7727122 None:intergenic 30.0%
AGCACTCACAACAATAAAAT+TGG + chr2_4:7727195-7727214 None:intergenic 30.0%
TCGTTGATATAAGTGAATGT+TGG - chr2_4:7727349-7727368 Msa0312570:intron 30.0%
TGATATAAGTGAATGTTGGT+AGG - chr2_4:7727353-7727372 Msa0312570:intron 30.0%
ACTTCATTGATGAAACTTGT+TGG - chr2_4:7727525-7727544 Msa0312570:CDS 30.0%
AGTATTTACCTTATGGAAAG+CGG + chr2_4:7727582-7727601 None:intergenic 30.0%
CTACCAAAAAAAAAAAGGGT+CGG - chr2_4:7727740-7727759 Msa0312570:CDS 30.0%
CTAACAATTGTACGTAATGA+CGG - chr2_4:7727851-7727870 Msa0312570:intron 30.0%
ATATTAGTTCATATCCCCAA+AGG + chr2_4:7727950-7727969 None:intergenic 30.0%
TAAACATACAAAGGGTAAGT+AGG - chr2_4:7728100-7728119 Msa0312570:intron 30.0%
CATGTTATTATTCTAGGTTG+AGG - chr2_4:7728318-7728337 Msa0312570:intron 30.0%
CAACATGGTTGTAGTTAAAA+AGG - chr2_4:7728813-7728832 Msa0312570:intron 30.0%
ATAAGTAATTTCTTGGCTGA+TGG - chr2_4:7728895-7728914 Msa0312570:intron 30.0%
! TTCTTCTGTGGATAATTTGT+GGG + chr2_4:7728945-7728964 None:intergenic 30.0%
ATTCTTCTGTGGATAATTTG+TGG + chr2_4:7728946-7728965 None:intergenic 30.0%
!! TGGTTTTCTAAGAATGTTTC+TGG - chr2_4:7729009-7729028 Msa0312570:intron 30.0%
AAAAAGAAGCTAATCATGTG+TGG - chr2_4:7729100-7729119 Msa0312570:intron 30.0%
GTATGTGCTTATTTGATCTA+AGG - chr2_4:7729140-7729159 Msa0312570:intron 30.0%
TAGTGGTAAAAACCACATAT+TGG + chr2_4:7729270-7729289 None:intergenic 30.0%
AGTTTAATATCGAGGATTAG+TGG + chr2_4:7729287-7729306 None:intergenic 30.0%
! AACTACCAAATCGTAACTTT+TGG - chr2_4:7729357-7729376 Msa0312570:intron 30.0%
! TTTTGCCAAAAGTTACGATT+TGG + chr2_4:7729365-7729384 None:intergenic 30.0%
GCTCGATATATAACAAATCA+CGG - chr2_4:7729533-7729552 Msa0312570:intron 30.0%
GGTAAAGATGAAAATGGAAA+TGG - chr2_4:7729622-7729641 Msa0312570:intron 30.0%
AAAGATGAAAATGGAAATGG+TGG - chr2_4:7729625-7729644 Msa0312570:intron 30.0%
! CTGTCATAAACTTTTTACGT+TGG - chr2_4:7730316-7730335 Msa0312570:CDS 30.0%
! ATAAGTACCCATCTTTTTAG+AGG + chr2_4:7730346-7730365 None:intergenic 30.0%
ATATAAGACCCTACTAAAGA+TGG - chr2_4:7730600-7730619 Msa0312570:intron 30.0%
CAATCTAACCATCTTTAGTA+GGG + chr2_4:7730611-7730630 None:intergenic 30.0%
TCAATCTAACCATCTTTAGT+AGG + chr2_4:7730612-7730631 None:intergenic 30.0%
TCCAAATACCTAAAATCAGA+TGG + chr2_4:7730733-7730752 None:intergenic 30.0%
TCAACAAAGCTCATAGATAA+AGG - chr2_4:7730781-7730800 Msa0312570:intron 30.0%
CAACAAAGCTCATAGATAAA+GGG - chr2_4:7730782-7730801 Msa0312570:intron 30.0%
CATCTTGAGATCATATTTGT+AGG + chr2_4:7730812-7730831 None:intergenic 30.0%
GCGATCTTAGTATATAATGA+TGG - chr2_4:7730869-7730888 Msa0312570:intron 30.0%
TATATTGGTCAACCTTCATT+TGG - chr2_4:7730928-7730947 Msa0312570:intron 30.0%
AATACTAATATCCACTTGTC+CGG + chr2_4:7730957-7730976 None:intergenic 30.0%
CGAAAAAACACAAACATCTT+GGG + chr2_4:7731124-7731143 None:intergenic 30.0%
ACGAAAAAACACAAACATCT+TGG + chr2_4:7731125-7731144 None:intergenic 30.0%
ACAAATCACATATCTCTCTT+AGG + chr2_4:7731245-7731264 None:intergenic 30.0%
!! TGTGATTTGTCCTATCTTTT+TGG - chr2_4:7731255-7731274 Msa0312570:CDS 30.0%
!! TTATATTAGGGTGCTCTTTT+TGG - chr2_4:7731332-7731351 Msa0312570:five_prime_UTR 30.0%
!!! GTGCTCTTTTTGGTTTATTA+GGG - chr2_4:7731342-7731361 Msa0312570:five_prime_UTR 30.0%
TTTCCAAAAGCTTCTTGACT+AGG + chr2_4:7726172-7726191 None:intergenic 35.0%
!! AGTCAAGAAGCTTTTGGAAA+AGG - chr2_4:7726172-7726191 Msa0312570:three_prime_UTR 35.0%
!! GTCAAGAAGCTTTTGGAAAA+GGG - chr2_4:7726173-7726192 Msa0312570:three_prime_UTR 35.0%
! AATACTCAAGTTTCTGAGAG+TGG + chr2_4:7726213-7726232 None:intergenic 35.0%
AAAAAATGCAGAGAGGGAAA+GGG + chr2_4:7726248-7726267 None:intergenic 35.0%
AAAAAAATGCAGAGAGGGAA+AGG + chr2_4:7726249-7726268 None:intergenic 35.0%
TCCACATGCAAATACAAGAT+TGG - chr2_4:7726993-7727012 Msa0312570:intron 35.0%
ACCAATCTTGTATTTGCATG+TGG + chr2_4:7726997-7727016 None:intergenic 35.0%
AATTTACAGCCTTGAATTGC+AGG + chr2_4:7727060-7727079 None:intergenic 35.0%
! TCTACATCAAACTGATTCTC+AGG - chr2_4:7727104-7727123 Msa0312570:intron 35.0%
GTTGTGCATAGTAAAATAGC+TGG + chr2_4:7728401-7728420 None:intergenic 35.0%
TTGTAAATGCAATTCTCCGA+CGG + chr2_4:7728538-7728557 None:intergenic 35.0%
ACACACCCTAAAGATTTCAT+AGG - chr2_4:7728562-7728581 Msa0312570:intron 35.0%
TGCGAGTAAAATCAATGACA+GGG + chr2_4:7728681-7728700 None:intergenic 35.0%
TTGCGAGTAAAATCAATGAC+AGG + chr2_4:7728682-7728701 None:intergenic 35.0%
!!! TGTCATTGATTTTACTCGCA+AGG - chr2_4:7728681-7728700 Msa0312570:intron 35.0%
! TTTAGGGCTCTTCTAAATCT+TGG - chr2_4:7728725-7728744 Msa0312570:intron 35.0%
GTGACTTAAACAATGCTTTG+AGG - chr2_4:7728789-7728808 Msa0312570:intron 35.0%
! ACTGCTTTAGTTCATTGTTC+TGG + chr2_4:7728860-7728879 None:intergenic 35.0%
AGAACAATGAACTAAAGCAG+TGG - chr2_4:7728859-7728878 Msa0312570:intron 35.0%
! GTTTCAGATTGATTCTTCTG+TGG + chr2_4:7728957-7728976 None:intergenic 35.0%
! GTGAACATTTGAAGCATTCA+TGG - chr2_4:7729031-7729050 Msa0312570:intron 35.0%
AGCATTCATGGATATTGTTC+AGG - chr2_4:7729043-7729062 Msa0312570:intron 35.0%
!! TTTAGACATGGTGGATTCTA+GGG + chr2_4:7729211-7729230 None:intergenic 35.0%
! AAATGGAAATGGTGGAATTG+AGG - chr2_4:7729633-7729652 Msa0312570:intron 35.0%
CTTCACAAACATCATCAATG+TGG + chr2_4:7729813-7729832 None:intergenic 35.0%
!! CAGATTTGATAATGTCAAGC+CGG - chr2_4:7730088-7730107 Msa0312570:intron 35.0%
AAAAATTACATCGATCCGAG+TGG - chr2_4:7730538-7730557 Msa0312570:intron 35.0%
CTTAGTATGATTCACAAGGT+TGG - chr2_4:7730654-7730673 Msa0312570:intron 35.0%
!! GCCATCTGATTTTAGGTATT+TGG - chr2_4:7730729-7730748 Msa0312570:intron 35.0%
AGTCAAACAGAGCAATCAAA+TGG - chr2_4:7730755-7730774 Msa0312570:intron 35.0%
GTCAAACAGAGCAATCAAAT+GGG - chr2_4:7730756-7730775 Msa0312570:intron 35.0%
! AGAATCTAGAATGTGATTGG+GGG + chr2_4:7731204-7731223 None:intergenic 35.0%
! GAGAATCTAGAATGTGATTG+GGG + chr2_4:7731205-7731224 None:intergenic 35.0%
! CGAGAATCTAGAATGTGATT+GGG + chr2_4:7731206-7731225 None:intergenic 35.0%
! ACGAGAATCTAGAATGTGAT+TGG + chr2_4:7731207-7731226 None:intergenic 35.0%
!!! TTGGTATTTTAGCTACAGCA+AGG - chr2_4:7731274-7731293 Msa0312570:CDS 35.0%
!!! GGTGCTCTTTTTGGTTTATT+AGG - chr2_4:7731341-7731360 Msa0312570:five_prime_UTR 35.0%
! TCTCCTAGTCAAGAAGCTTT+TGG - chr2_4:7726166-7726185 Msa0312570:three_prime_UTR 40.0%
GCACTGCATATAACAACTGT+TGG + chr2_4:7726386-7726405 None:intergenic 40.0%
GAGGGACTAAACAGAAAAGT+TGG + chr2_4:7726453-7726472 None:intergenic 40.0%
AGAGGGACCAAAAGTGAAAA+TGG - chr2_4:7726794-7726813 Msa0312570:intron 40.0%
GAGGGACTAAAACGAAAAGT+TGG - chr2_4:7726855-7726874 Msa0312570:intron 40.0%
ATTGCAGGCCAAAAATCATC+TGG + chr2_4:7727045-7727064 None:intergenic 40.0%
!!! GATTTTTGGCCTGCAATTCA+AGG - chr2_4:7727048-7727067 Msa0312570:intron 40.0%
AGTTTGATGTAGATAGGGAG+TGG + chr2_4:7727097-7727116 None:intergenic 40.0%
! AGGACAGTTTAAGAGCATAG+AGG - chr2_4:7727373-7727392 Msa0312570:intron 40.0%
AGACAACAATGCACTTTCAG+CGG - chr2_4:7727641-7727660 Msa0312570:CDS 40.0%
!!! TGGCCGACCCTTTTTTTTTT+TGG + chr2_4:7727746-7727765 None:intergenic 40.0%
AGTGATCCTTGCACTAACAA+CGG - chr2_4:7727886-7727905 Msa0312570:intron 40.0%
GATCTAATGGTCAAGATGAG+TGG + chr2_4:7728370-7728389 None:intergenic 40.0%
AGTAAAATAGCTGGATGCGT+TGG + chr2_4:7728392-7728411 None:intergenic 40.0%
!!! AATTCTCCGACGGACTTTTT+TGG + chr2_4:7728528-7728547 None:intergenic 40.0%
AATCAATGACAGGGACATGA+TGG + chr2_4:7728672-7728691 None:intergenic 40.0%
! TTACTCGCAAGGTGCTTAAA+TGG - chr2_4:7728692-7728711 Msa0312570:intron 40.0%
!! ACAATGCTTTGAGGTCAACA+TGG - chr2_4:7728798-7728817 Msa0312570:intron 40.0%
CAATGAACTAAAGCAGTGGA+AGG - chr2_4:7728863-7728882 Msa0312570:intron 40.0%
!! CTTTAGACATGGTGGATTCT+AGG + chr2_4:7729212-7729231 None:intergenic 40.0%
ATGTGTATCTTAGGATTCGC+GGG + chr2_4:7729484-7729503 None:intergenic 40.0%
CATGTGTATCTTAGGATTCG+CGG + chr2_4:7729485-7729504 None:intergenic 40.0%
CGAATCCTAAGATACACATG+TGG - chr2_4:7729485-7729504 Msa0312570:intron 40.0%
GAACACCACATGTGTATCTT+AGG + chr2_4:7729493-7729512 None:intergenic 40.0%
ATCACGGTGAATCTCTTTGT+AGG - chr2_4:7729549-7729568 Msa0312570:intron 40.0%
GTACGCTTATTCCAAGACAT+TGG - chr2_4:7729573-7729592 Msa0312570:intron 40.0%
ATAATCACTGCAACACTTGC+GGG + chr2_4:7729712-7729731 None:intergenic 40.0%
GATAATCACTGCAACACTTG+CGG + chr2_4:7729713-7729732 None:intergenic 40.0%
!! ACATCATCAATGTGGACTAG+TGG + chr2_4:7729805-7729824 None:intergenic 40.0%
! TTGGTCTGCCTCTAAAAAGA+TGG - chr2_4:7730335-7730354 Msa0312570:CDS 40.0%
! TGGTCTGCCTCTAAAAAGAT+GGG - chr2_4:7730336-7730355 Msa0312570:CDS 40.0%
CCACAAAGTCAAATTCCACT+CGG + chr2_4:7730556-7730575 None:intergenic 40.0%
CTAGACGATAGTGTCAAATG+CGG - chr2_4:7730835-7730854 Msa0312570:intron 40.0%
ATAGTGTCAAATGCGGAAGA+AGG - chr2_4:7730842-7730861 Msa0312570:intron 40.0%
! GTCAACCTTCATTTGGTTTC+CGG - chr2_4:7730935-7730954 Msa0312570:intron 40.0%
! AGACCATCGTTGATTACCTA+CGG + chr2_4:7731002-7731021 None:intergenic 40.0%
!! ACAGGTGGTGCTGGTTATAT+TGG - chr2_4:7726140-7726159 Msa0312570:three_prime_UTR 45.0%
! TCAAGTTTCTGAGAGTGGCA+TGG + chr2_4:7726208-7726227 None:intergenic 45.0%
TCCAAAGTCAGCTTTCTGAG+AGG - chr2_4:7726967-7726986 Msa0312570:intron 45.0%
GCGAGAAGACTGATATACAC+TGG - chr2_4:7727452-7727471 Msa0312570:CDS 45.0%
CTTCTCCACTGAAGGATGAT+GGG - chr2_4:7727489-7727508 Msa0312570:CDS 45.0%
TTTGGGCGACCCTTTATGTA+TGG + chr2_4:7727717-7727736 None:intergenic 45.0%
GTGATCCTTGCACTAACAAC+GGG - chr2_4:7727887-7727906 Msa0312570:intron 45.0%
TGATCCTTGCACTAACAACG+GGG - chr2_4:7727888-7727907 Msa0312570:intron 45.0%
TTCATATCCCCAAAGGACGT+GGG + chr2_4:7727943-7727962 None:intergenic 45.0%
GGTCCAATTAAATCCCTCAC+CGG - chr2_4:7728340-7728359 Msa0312570:intron 45.0%
ACACCGGTGAGGGATTTAAT+TGG + chr2_4:7728346-7728365 None:intergenic 45.0%
! CACTGGATAGTGGTGCATTT+GGG + chr2_4:7728472-7728491 None:intergenic 45.0%
! TCACTGGATAGTGGTGCATT+TGG + chr2_4:7728473-7728492 None:intergenic 45.0%
!!! CTTTTTTGGTGGCAGTGTCA+TGG + chr2_4:7728514-7728533 None:intergenic 45.0%
CATGGATATTGTTCAGGCTG+TGG - chr2_4:7729049-7729068 Msa0312570:intron 45.0%
GATCTAAGGGTCAAGATGAG+TGG - chr2_4:7729154-7729173 Msa0312570:intron 45.0%
ACACTGGTGAGGGACTTAAT+TGG - chr2_4:7729178-7729197 Msa0312570:intron 45.0%
TGTGTATCTTAGGATTCGCG+GGG + chr2_4:7729483-7729502 None:intergenic 45.0%
TTCTCTCTCTGCCAATGTCT+TGG + chr2_4:7729587-7729606 None:intergenic 45.0%
! TGGAAATGGTGGAATTGAGG+TGG - chr2_4:7729636-7729655 Msa0312570:intron 45.0%
GGAATTGAGGTGGTTACTCT+TGG - chr2_4:7729646-7729665 Msa0312570:intron 45.0%
CACCTAATTGTCTCACTCAC+CGG + chr2_4:7730110-7730129 None:intergenic 45.0%
! CCGAGTGGAATTTGACTTTG+TGG - chr2_4:7730553-7730572 Msa0312570:intron 45.0%
TGTCAAATGCGGAAGAAGGA+CGG - chr2_4:7730846-7730865 Msa0312570:intron 45.0%
CTTGTCCGGAAACCAAATGA+AGG + chr2_4:7730943-7730962 None:intergenic 45.0%
! TCATTTGGTTTCCGGACAAG+TGG - chr2_4:7730943-7730962 Msa0312570:intron 45.0%
TTGATATGGAGACACTCCGT+AGG - chr2_4:7730983-7731002 Msa0312570:intron 45.0%
ACTCCGTAGGTAATCAACGA+TGG - chr2_4:7730996-7731015 Msa0312570:intron 45.0%
TAGAATGTGATTGGGGGTTG+AGG + chr2_4:7731198-7731217 None:intergenic 45.0%
!! ATATTTAATTAAAAAATGAA+CGG + chr2_4:7726356-7726375 None:intergenic 5.0%
!!! TTAAAAAATTCTAATTTTTT+GGG + chr2_4:7726607-7726626 None:intergenic 5.0%
! AGTGATGGAAAGGAGCTGCA+AGG - chr2_4:7726109-7726128 Msa0312570:three_prime_UTR 50.0%
AGCTGCAAGGTGTGTGTTAC+AGG - chr2_4:7726122-7726141 Msa0312570:three_prime_UTR 50.0%
TGCAAGGTGTGTGTTACAGG+TGG - chr2_4:7726125-7726144 Msa0312570:three_prime_UTR 50.0%
! GCCTCTCAGAAAGCTGACTT+TGG + chr2_4:7726971-7726990 None:intergenic 50.0%
GTAGATAGGGAGTGGCAACA+TGG + chr2_4:7727089-7727108 None:intergenic 50.0%
ATAGAGGAAGCAGCAGTAGC+AGG - chr2_4:7727389-7727408 Msa0312570:intron 50.0%
ACTGATATACACTGGCACCG+TGG - chr2_4:7727460-7727479 Msa0312570:CDS 50.0%
GCTTCTCCACTGAAGGATGA+TGG - chr2_4:7727488-7727507 Msa0312570:CDS 50.0%
TATGGAAAGCGGTGAGAGGA+AGG + chr2_4:7727571-7727590 None:intergenic 50.0%
TCCTCTCACCGCTTTCCATA+AGG - chr2_4:7727571-7727590 Msa0312570:CDS 50.0%
ACCTTATGGAAAGCGGTGAG+AGG + chr2_4:7727575-7727594 None:intergenic 50.0%
GATCCTTGCACTAACAACGG+GGG - chr2_4:7727889-7727908 Msa0312570:intron 50.0%
TGGTTGAACCCACGTCCTTT+GGG - chr2_4:7727932-7727951 Msa0312570:intron 50.0%
GTTCATATCCCCAAAGGACG+TGG + chr2_4:7727944-7727963 None:intergenic 50.0%
GGTCAAGATGAGTGGTACAC+CGG + chr2_4:7729162-7729181 None:intergenic 50.0%
GCTGGATGCGTTGGATCTAA+TGG + chr2_4:7728383-7728402 None:intergenic 50.0%
! GATAGTGGTGCATTTGGGTG+AGG + chr2_4:7728467-7728486 None:intergenic 50.0%
GGTGGTAGTTCACTGGATAG+TGG + chr2_4:7728482-7728501 None:intergenic 50.0%
!! AGTGGTTGGTGGTAGTTCAC+TGG + chr2_4:7728489-7728508 None:intergenic 50.0%
! GTGTCATGGATAGTGGTTGG+TGG + chr2_4:7728500-7728519 None:intergenic 50.0%
! GCAGTGTCATGGATAGTGGT+TGG + chr2_4:7728503-7728522 None:intergenic 50.0%
CTGCCACCAAAAAAGTCCGT+CGG - chr2_4:7728519-7728538 Msa0312570:intron 50.0%
!!! TCTCCGACGGACTTTTTTGG+TGG + chr2_4:7728525-7728544 None:intergenic 50.0%
GGTCAAGATGAGTGGTACAC+TGG - chr2_4:7729162-7729181 Msa0312570:intron 50.0%
AGATGAGTGGTACACTGGTG+AGG - chr2_4:7729167-7729186 Msa0312570:intron 50.0%
GATGAGTGGTACACTGGTGA+GGG - chr2_4:7729168-7729187 Msa0312570:intron 50.0%
!! CATGGTGGATTCTAGGGTGA+GGG + chr2_4:7729205-7729224 None:intergenic 50.0%
!! ACATGGTGGATTCTAGGGTG+AGG + chr2_4:7729206-7729225 None:intergenic 50.0%
CTTAGGATTCGCGGGGAATT+TGG + chr2_4:7729476-7729495 None:intergenic 50.0%
! GAGGTGGTTACTCTTGGTGT+TGG - chr2_4:7729652-7729671 Msa0312570:intron 50.0%
!! TACTCTTGGTGTTGGCCTAG+TGG - chr2_4:7729660-7729679 Msa0312570:intron 50.0%
!! ACTCTTGGTGTTGGCCTAGT+GGG - chr2_4:7729661-7729680 Msa0312570:intron 50.0%
AGCCGGTGAGTGAGACAATT+AGG - chr2_4:7730105-7730124 Msa0312570:intron 50.0%
AACACCCAATCCGATCCACA+TGG - chr2_4:7730390-7730409 Msa0312570:CDS 50.0%
TGTGCCATGTGGATCGGATT+GGG + chr2_4:7730397-7730416 None:intergenic 50.0%
CTCATGTGTGCCATGTGGAT+CGG + chr2_4:7730403-7730422 None:intergenic 50.0%
CTTACCTCATGTGTGCCATG+TGG + chr2_4:7730408-7730427 None:intergenic 50.0%
GTCAAATGCGGAAGAAGGAC+GGG - chr2_4:7730847-7730866 Msa0312570:intron 50.0%
GTGTGTGTTACAGGTGGTGC+TGG - chr2_4:7726131-7726150 Msa0312570:three_prime_UTR 55.0%
CAGTGGAGAAGCAGCAACCA+CGG + chr2_4:7727480-7727499 None:intergenic 55.0%
! GGTTGCTGCTTCTCCACTGA+AGG - chr2_4:7727481-7727500 Msa0312570:CDS 55.0%
CCACTCCCATCATCCTTCAG+TGG + chr2_4:7727497-7727516 None:intergenic 55.0%
!! CCACTGAAGGATGATGGGAG+TGG - chr2_4:7727494-7727513 Msa0312570:CDS 55.0%
TGAGAGGAAGGTGGAGACTC+TGG + chr2_4:7727559-7727578 None:intergenic 55.0%
CAACCCCCGTTGTTAGTGCA+AGG + chr2_4:7727895-7727914 None:intergenic 55.0%
TTCAACCACCACACGAGCGT+GGG + chr2_4:7727920-7727939 None:intergenic 55.0%
GTGGTTGAACCCACGTCCTT+TGG - chr2_4:7727931-7727950 Msa0312570:intron 55.0%
GGTTGAACCCACGTCCTTTG+GGG - chr2_4:7727933-7727952 Msa0312570:intron 55.0%
GATGAGTGGTACACCGGTGA+GGG + chr2_4:7728356-7728375 None:intergenic 55.0%
AGATGAGTGGTACACCGGTG+AGG + chr2_4:7728357-7728376 None:intergenic 55.0%
GGTGGCAGTGTCATGGATAG+TGG + chr2_4:7728507-7728526 None:intergenic 55.0%
!! GAAGAGCATCTCCTCCCACT+AGG + chr2_4:7729678-7729697 None:intergenic 55.0%
GTGTGCCATGTGGATCGGAT+TGG + chr2_4:7730398-7730417 None:intergenic 55.0%
CGATCCACATGGCACACATG+AGG - chr2_4:7730401-7730420 Msa0312570:CDS 55.0%
GTGATTGGGGGTTGAGGCAA+GGG + chr2_4:7731192-7731211 None:intergenic 55.0%
TGTGATTGGGGGTTGAGGCA+AGG + chr2_4:7731193-7731212 None:intergenic 55.0%
! GGAAGGTGGAGACTCTGGAG+AGG + chr2_4:7727554-7727573 None:intergenic 60.0%
GGAAAGCGGTGAGAGGAAGG+TGG + chr2_4:7727568-7727587 None:intergenic 60.0%
TTGAACCCACGCTCGTGTGG+TGG - chr2_4:7727912-7727931 Msa0312570:intron 60.0%
GTTCAACCACCACACGAGCG+TGG + chr2_4:7727921-7727940 None:intergenic 60.0%
!! CTTGGTGTTGGCCTAGTGGG+AGG - chr2_4:7729664-7729683 Msa0312570:intron 60.0%
GGGTTGAACCCACGCTCGTG+TGG - chr2_4:7727909-7727928 Msa0312570:intron 65.0%
GGGGGTTGAGGCAAGGGCAG+AGG + chr2_4:7731186-7731205 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 7726000 7731406 7726000 ID=Msa0312570;Name=Msa0312570
chr2_4 mRNA 7726000 7731406 7726000 ID=Msa0312570-mRNA-1;Parent=Msa0312570;Name=Msa0312570-mRNA-1;_AED=0.12;_eAED=0.12;_QI=113|1|1|1|1|1|5|521|341
chr2_4 exon 7726000 7726662 7726000 ID=Msa0312570-mRNA-1:exon:3005;Parent=Msa0312570-mRNA-1
chr2_4 exon 7727447 7727835 7727447 ID=Msa0312570-mRNA-1:exon:3004;Parent=Msa0312570-mRNA-1
chr2_4 exon 7729814 7730026 7729814 ID=Msa0312570-mRNA-1:exon:3003;Parent=Msa0312570-mRNA-1
chr2_4 exon 7730281 7730447 7730281 ID=Msa0312570-mRNA-1:exon:3002;Parent=Msa0312570-mRNA-1
chr2_4 exon 7731179 7731406 7731179 ID=Msa0312570-mRNA-1:exon:3001;Parent=Msa0312570-mRNA-1
chr2_4 five_prime_UTR 7731294 7731406 7731294 ID=Msa0312570-mRNA-1:five_prime_utr;Parent=Msa0312570-mRNA-1
chr2_4 CDS 7731179 7731293 7731179 ID=Msa0312570-mRNA-1:cds;Parent=Msa0312570-mRNA-1
chr2_4 CDS 7730281 7730447 7730281 ID=Msa0312570-mRNA-1:cds;Parent=Msa0312570-mRNA-1
chr2_4 CDS 7729814 7730026 7729814 ID=Msa0312570-mRNA-1:cds;Parent=Msa0312570-mRNA-1
chr2_4 CDS 7727447 7727835 7727447 ID=Msa0312570-mRNA-1:cds;Parent=Msa0312570-mRNA-1
chr2_4 CDS 7726521 7726662 7726521 ID=Msa0312570-mRNA-1:cds;Parent=Msa0312570-mRNA-1
chr2_4 three_prime_UTR 7726000 7726520 7726000 ID=Msa0312570-mRNA-1:three_prime_utr;Parent=Msa0312570-mRNA-1
Gene Sequence

>Msa0312570

ATGGAAAGGAGCTGCAAGGTGTGTGTTACAGGTGGTGCTGGTTATATTGGCTCTCTCCTAGTCAAGAAGCTTTTGGAAAAGGGATACACTGTCCATGCCACTCTCAGAAACTTGAAGGACGAGTCCAAAGTCAGCTTTCTGAGAGGCTTTCCACATGCAAATACAAGATTGGTGTTATTTGAAGCTGACATCTATAAACCAGATGATTTTTGGCCTGCAATTCAAGGCTGTAAATTTGTCTTCCATGTTGCCACTCCCTATCTACATCAAACTGATTCTCAGTTTAAGAGCATAGAGGAAGCAGCAGTAGCAGGTGTAAAAAGCATAGCTGAGACTTGTATTAAATCAAAAACAGCGAGAAGACTGATATACACTGGCACCGTGGTTGCTGCTTCTCCACTGAAGGATGATGGGAGTGGTTACAAAGACTTCATTGATGAAACTTGTTGGACTCCTCTCCAGAGTCTCCACCTTCCTCTCACCGCTTTCCATAAGGAGTACGCTTATTCCAAGACATTGGCAGAGAGAGAATTATTAACGAGTTATGGTAAAGATGAAAATGGAAATGGTGGAATTGAGGTGGTTACTCTTGGTGTTGGCCTAGTGGGAGGAGATGCTCTTCTCAGTTACTTACCCGCAAGTGTTGCAGTGATTATCTCTCAGCTTCAAGACAATGAAGTTGCATATCAGTCTATGAAGTTCTTAGAAGATATAGATGGAAAAATTCCACTAGTCCACATTGATGATGTTTGTGAAGCTCATATCTTTTGTGCTGAAGATTCATCTATCAATGACAGATTTTTGGTTGCAAGCTCATATGCATCATCAGCAGAGATAGCAAATTATTATCTTCAAAACTATCCAGAATTCAATTTGAAAGAGAAGTATTTGGAAGAGTCAAACAGAGCAATCAAATGGGCATCAACAAAGCTCATAGATAAAGGGTTTTCCTACAAATATGATCTCAAGATGATACTAGACGATAGTGTCAAATGCGGAAGAAGGACGGGCGATCTTAGTATATAA

Protein sequence

>Msa0312570

MERSCKVCVTGGAGYIGSLLVKKLLEKGYTVHATLRNLKDESKVSFLRGFPHANTRLVLFEADIYKPDDFWPAIQGCKFVFHVATPYLHQTDSQFKSIEEAAVAGVKSIAETCIKSKTARRLIYTGTVVAASPLKDDGSGYKDFIDETCWTPLQSLHLPLTAFHKEYAYSKTLAERELLTSYGKDENGNGGIEVVTLGVGLVGGDALLSYLPASVAVIISQLQDNEVAYQSMKFLEDIDGKIPLVHIDDVCEAHIFCAEDSSINDRFLVASSYASSAEIANYYLQNYPEFNLKEKYLEESNRAIKWASTKLIDKGFSYKYDLKMILDDSVKCGRRTGDLSI*