AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0253240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0253240 MtrunA17_Chr2g0312531 98.077 104 2 0 1 104 38 141 2.58e-67 208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0253240 AT1G55980.2 69.792 96 29 0 9 104 13 108 1.21e-42 142
Msa0253240 AT1G56000.1 69.792 96 29 0 9 104 13 108 2.67e-42 143
Msa0253240 AT1G55980.1 69.792 96 29 0 9 104 153 248 1.02e-41 143
Msa0253240 AT1G56000.2 65.217 46 16 0 59 104 8 53 1.08e-14 68.9
Msa0253240 AT1G55980.3 65.217 46 16 0 59 104 8 53 1.23e-14 68.2
Msa0253240 AT3G04650.1 40.476 84 46 2 19 101 95 175 1.81e-12 63.2

Find 104 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGACTTCCACTGTCTTTA+AGG 0.054220 2_2:-44874003 Msa0253240:CDS
GTGGATTGGCAGCAGCTTTA+AGG 0.178617 2_2:-44867367 Msa0253240:three_prime_UTR
CAAAATCTTGGTCAGTTTAA+AGG 0.201127 2_2:-44871773 Msa0253240:three_prime_UTR
AATAGGAAAAGAACCTTCTT+TGG 0.229970 2_2:+44873759 None:intergenic
CAAGATTGACGAACCATCTA+TGG 0.257646 2_2:+44869191 None:intergenic
ATTAAATTCACACCCAAGTT+TGG 0.282745 2_2:+44867273 None:intergenic
TATGTTCAGATTCCAGTTAA+AGG 0.288822 2_2:-44869545 Msa0253240:three_prime_UTR
CATTTCTAGTTCTCCAAACT+TGG 0.295251 2_2:-44867286 Msa0253240:three_prime_UTR
GTCTTTAAGGTTGCTGTGTT+GGG 0.311565 2_2:-44873990 Msa0253240:CDS
AGCAAGTTTGGTGTGGGTAT+TGG 0.312552 2_2:-44871851 Msa0253240:CDS
ACTGCGAAACATGGCTTAAC+AGG 0.328484 2_2:+44870635 None:intergenic
ATCTATGGCACCTTCAACAT+TGG 0.342290 2_2:+44867391 None:intergenic
TGCTGCCAATCCACTATCTA+TGG 0.346820 2_2:+44867376 None:intergenic
AAAATTCTAAAGTTCTAAGT+TGG 0.347059 2_2:-44869511 Msa0253240:three_prime_UTR
TTAGGTGTGGAAAGCAAGTT+TGG 0.352186 2_2:-44871863 Msa0253240:intron
TGAATGGAGAAGCCTTTAAC+TGG 0.356616 2_2:+44869533 None:intergenic
ACTTGGGTGTGAATTTAATC+TGG 0.358888 2_2:-44867269 Msa0253240:three_prime_UTR
TGAACTAGACGAGCCACTTC+AGG 0.384189 2_2:+44872866 None:intergenic
AAGCTCCAATATGTAGCATT+TGG 0.398447 2_2:+44867153 None:intergenic
TGTCTTTAAGGTTGCTGTGT+TGG 0.412707 2_2:-44873991 Msa0253240:CDS
ATAGGAAAAGAACCTTCTTT+GGG 0.416059 2_2:+44873760 None:intergenic
TGTATTATATTTAGTGTGTT+CGG 0.421312 2_2:-44867198 Msa0253240:three_prime_UTR
ATACTTCAACTATAAACAAC+TGG 0.425588 2_2:+44867328 None:intergenic
CTTTGGGACATGCGTCCACC+AGG 0.427017 2_2:+44873776 None:intergenic
TTTCAAGAATTTCAAAGGAC+AGG 0.427693 2_2:-44869247 Msa0253240:three_prime_UTR
ATGGACCAAATGCTACATAT+TGG 0.431046 2_2:-44867158 Msa0253240:three_prime_UTR
TGTGTTAGTCCCAATGTTGA+AGG 0.442671 2_2:-44867401 Msa0253240:three_prime_UTR
GTGGCTTTGAATTGAATATG+AGG 0.446152 2_2:+44874127 None:intergenic
GCCATGTTTCGCAGTTATGC+TGG 0.447106 2_2:-44870627 Msa0253240:three_prime_UTR
TTTGAGTCTGCTAGAGGCCC+TGG 0.449558 2_2:-44873794 Msa0253240:CDS
CTTAATAACATTCTAAATTG+TGG 0.450393 2_2:-44866839 Msa0253240:three_prime_UTR
TAGTTGAAGTATTGAAGCCT+TGG 0.450499 2_2:-44867317 Msa0253240:three_prime_UTR
AAATTCTAAAGTTCTAAGTT+GGG 0.454731 2_2:-44869510 Msa0253240:three_prime_UTR
GAGAAATTGTGGTCATTGAT+AGG 0.459014 2_2:-44871806 Msa0253240:three_prime_UTR
TCTAGAGAGAAAACTGAAGA+TGG 0.459795 2_2:-44872938 Msa0253240:intron
GCTGAATGGAGAGAAAAGTT+TGG 0.467648 2_2:-44872818 Msa0253240:intron
GTTGAAGGTGCCATAGATAG+TGG 0.474892 2_2:-44867386 Msa0253240:three_prime_UTR
AGAGAGTATAATTGCTCAAA+CGG 0.476140 2_2:-44869320 Msa0253240:three_prime_UTR
AATATAATACAACGATGTCT+TGG 0.478065 2_2:+44867210 None:intergenic
GCATCAACTCTTGCTAGAAA+TGG 0.485520 2_2:-44873833 Msa0253240:CDS
AAGGTTGCTGTGTTGGGTGG+TGG 0.487031 2_2:-44873984 Msa0253240:CDS
AACACAGAAGTCCCCACATA+TGG 0.489054 2_2:+44867418 None:intergenic
GGCTCGTCTAGTTCAAGAAT+GGG 0.493742 2_2:-44872858 Msa0253240:CDS
TGAATAGAGAGAGAAAGAGC+TGG 0.495050 2_2:+44874068 None:intergenic
CGAGGGGTCTCGTAGCTGAA+TGG 0.495649 2_2:-44872832 Msa0253240:CDS
CAGCTATAGTAGACTAGCCT+TGG 0.495721 2_2:+44867074 None:intergenic
AAGCAAATATCACAAAACTT+TGG 0.495738 2_2:-44866917 Msa0253240:three_prime_UTR
TTATTCAATGTAACGTCTGA+GGG 0.498342 2_2:+44869286 None:intergenic
GACCATGAGACTTCAAGAAA+AGG 0.503697 2_2:-44866942 Msa0253240:three_prime_UTR
TACTGTGATAGCAGGAAGCC+AGG 0.508981 2_2:-44869485 Msa0253240:three_prime_UTR
CTCGGTTAGCAAGCCTGAAG+TGG 0.510458 2_2:-44872879 Msa0253240:CDS
TTCAAGAATTTCAAAGGACA+GGG 0.513242 2_2:-44869246 Msa0253240:three_prime_UTR
GAGAGTATAATTGCTCAAAC+GGG 0.516333 2_2:-44869319 Msa0253240:three_prime_UTR
TGGCTCGTCTAGTTCAAGAA+TGG 0.519455 2_2:-44872859 Msa0253240:CDS
TCTATGGCACCTTCAACATT+GGG 0.520411 2_2:+44867392 None:intergenic
AACAAGAGACTAGCCATATG+TGG 0.520604 2_2:-44867431 Msa0253240:three_prime_UTR
AGACGTTACATTGAATAAAG+TGG 0.521551 2_2:-44869281 Msa0253240:three_prime_UTR
TCTTGGGCAATGCTAGCAGC+TGG 0.522353 2_2:+44867476 None:intergenic
AGGATTGTGGTGTAAAATCA+AGG 0.523160 2_2:-44869592 Msa0253240:three_prime_UTR
GGTGTGGATGGACAAAATCT+TGG 0.523630 2_2:-44871785 Msa0253240:three_prime_UTR
ATTTCTAGTTCTCCAAACTT+GGG 0.525086 2_2:-44867285 Msa0253240:three_prime_UTR
AGCTGCTAGCATTGCCCAAG+AGG 0.542908 2_2:-44867474 Msa0253240:three_prime_UTR
AGCCAGGCCGTTCTACTACA+AGG 0.555450 2_2:-44869469 Msa0253240:intron
TGGGTATTGGAAGAGTTGAA+TGG 0.559316 2_2:-44871838 Msa0253240:CDS
TTTATTCAATGTAACGTCTG+AGG 0.561529 2_2:+44869285 None:intergenic
ACACTCTTTGAGTCTGCTAG+AGG 0.565822 2_2:-44873800 Msa0253240:CDS
AGAGAAAACTGAAGATGGGA+AGG 0.566879 2_2:-44872933 Msa0253240:CDS
CTAGAGAGAAAACTGAAGAT+GGG 0.567373 2_2:-44872937 Msa0253240:intron
GGTTGAATGATGAGAAATTG+TGG 0.572705 2_2:-44871817 Msa0253240:exon
ACTAGGATTGCAGATGTCAC+AGG 0.578838 2_2:-44871619 Msa0253240:three_prime_UTR
GTTGGGCTTACTGTGATAGC+AGG 0.579207 2_2:-44869493 Msa0253240:three_prime_UTR
ATTTGCAGAGCCTTTGTCAA+CGG 0.584190 2_2:-44870603 Msa0253240:intron
GCCAGCATAACTGCGAAACA+TGG 0.585902 2_2:+44870626 None:intergenic
AGTTCAAGAATGGGAGTCGA+GGG 0.586947 2_2:-44872849 Msa0253240:CDS
ACAGGACGGTTGCCACCACT+TGG 0.588089 2_2:-44871601 Msa0253240:intron
ATGAATACCTTGTAGTAGAA+CGG 0.588295 2_2:+44869462 None:intergenic
TCCATATAGGAGTAGGATTG+TGG 0.588869 2_2:-44869605 Msa0253240:intron
GTGGACGCATGTCCCAAAGA+AGG 0.590847 2_2:-44873772 Msa0253240:intron
TTTAAGGTTGCTGTGTTGGG+TGG 0.593128 2_2:-44873987 Msa0253240:CDS
TACCTTGTAGTAGAACGGCC+TGG 0.593327 2_2:+44869467 None:intergenic
AAGATTGACGAACCATCTAT+GGG 0.594980 2_2:+44869192 None:intergenic
ACAAGAGACTAGCCATATGT+GGG 0.595773 2_2:-44867430 Msa0253240:three_prime_UTR
GTAGACTAGCCTTGGTTGAG+CGG 0.602785 2_2:+44867082 None:intergenic
CTAGAAATGATAATGTTCCA+AGG 0.605714 2_2:+44867300 None:intergenic
TGTGGAAAGCAAGTTTGGTG+TGG 0.614933 2_2:-44871858 Msa0253240:CDS
TAGTTCAAGAATGGGAGTCG+AGG 0.616885 2_2:-44872850 Msa0253240:CDS
TGGTCATTGATAGGTGTGGA+TGG 0.617485 2_2:-44871797 Msa0253240:three_prime_UTR
GTGGAAAGCAAGTTTGGTGT+GGG 0.619348 2_2:-44871857 Msa0253240:CDS
CTGGAAAGTAGTTGTAACAG+TGG 0.622165 2_2:+44874087 None:intergenic
CTTCATCATACCGTTGACAA+AGG 0.623551 2_2:+44870593 None:intergenic
GTGGGAGAACTATAAACTCA+AGG 0.626124 2_2:-44867118 Msa0253240:three_prime_UTR
GGAGAACATGAAATTTACGA+TGG 0.632813 2_2:-44867177 Msa0253240:three_prime_UTR
AGGTGCCATAGATAGTGGAT+TGG 0.636479 2_2:-44867381 Msa0253240:three_prime_UTR
TCAAGAATTTCAAAGGACAG+GGG 0.636565 2_2:-44869245 Msa0253240:three_prime_UTR
TTTGGGACATGCGTCCACCA+GGG 0.639991 2_2:+44873777 None:intergenic
GATTACTCACCGCTCAACCA+AGG 0.641827 2_2:-44867091 Msa0253240:three_prime_UTR
CACAGCAACCTTAAAGACAG+TGG 0.642228 2_2:+44873995 None:intergenic
AGCACATTCATACCAAGTGG+TGG 0.660283 2_2:+44871589 None:intergenic
GAGTCTGCTAGAGGCCCTGG+TGG 0.667455 2_2:-44873791 Msa0253240:CDS
ATTGTGGTCATTGATAGGTG+TGG 0.696169 2_2:-44871801 Msa0253240:three_prime_UTR
GTTCAAGAATGGGAGTCGAG+GGG 0.707586 2_2:-44872848 Msa0253240:CDS
CAAGAGACTAGCCATATGTG+GGG 0.727472 2_2:-44867429 Msa0253240:three_prime_UTR
GGATTGCAGATGTCACAGGA+CGG 0.734670 2_2:-44871615 Msa0253240:three_prime_UTR
GGAGAACTATAAACTCAAGG+TGG 0.737370 2_2:-44867115 Msa0253240:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAATGATGAAT+TGG + chr2_2:44867010-44867029 None:intergenic 10.0%
!! AATCATAATATATCAATAAA+AGG + chr2_2:44867036-44867055 None:intergenic 10.0%
!! CCATTAAATAAATAAAAAAT+AGG + chr2_2:44867195-44867214 None:intergenic 10.0%
!!! CCTATTTTTTATTTATTTAA+TGG - chr2_2:44867192-44867211 Msa0253240:three_prime_UTR 10.0%
!!! GATTATTATTTCTTATTATT+AGG - chr2_2:44869053-44869072 Msa0253240:intron 10.0%
!!! TATGATTATGATTTTTGAAA+TGG - chr2_2:44867055-44867074 Msa0253240:three_prime_UTR 15.0%
!!! ATATTTTATAGCTGTTAAAT+TGG - chr2_2:44867252-44867271 Msa0253240:three_prime_UTR 15.0%
!!! CTATGTTTTTCTAATATTTA+AGG + chr2_2:44868761-44868780 None:intergenic 15.0%
!!! AAGTTTTTTTTTTGTTTGTT+AGG - chr2_2:44869404-44869423 Msa0253240:intron 15.0%
!!! TTACTATTTTTTATTCTCTT+CGG + chr2_2:44873051-44873070 None:intergenic 15.0%
!!! TTAAAGTTTTAGTTATTGAT+TGG - chr2_2:44873970-44873989 Msa0253240:intron 15.0%
!!! AAATATTAGTTTATTACACC+CGG - chr2_2:44867298-44867317 Msa0253240:three_prime_UTR 20.0%
!! AATTACATGCATTAAAACAA+TGG + chr2_2:44867785-44867804 None:intergenic 20.0%
!!! TTTTATAGATTGTCATTGTT+TGG - chr2_2:44867820-44867839 Msa0253240:intron 20.0%
!! TTACAAACATTGCATTAATT+TGG - chr2_2:44868331-44868350 Msa0253240:intron 20.0%
!!! AGACTTTATTTCTATATGAA+TGG + chr2_2:44868390-44868409 None:intergenic 20.0%
!!! AAATAAAGTCTTTAACTTGT+AGG - chr2_2:44868399-44868418 Msa0253240:intron 20.0%
!! ATTCAAATTGTGAAATCATA+AGG + chr2_2:44868428-44868447 None:intergenic 20.0%
!!! AAATATCTTTTATGTAACAC+CGG - chr2_2:44868620-44868639 Msa0253240:intron 20.0%
!!! CCAATAATAATTTAAGACAA+TGG + chr2_2:44868697-44868716 None:intergenic 20.0%
!! CCATTGTCTTAAATTATTAT+TGG - chr2_2:44868694-44868713 Msa0253240:intron 20.0%
!!! GAAATAATAATCATTTTCAC+TGG + chr2_2:44869045-44869064 None:intergenic 20.0%
!!! TTATTTCTTATTATTAGGTG+TGG - chr2_2:44869058-44869077 Msa0253240:intron 20.0%
!!! CTGATTAGTTATTTTTGAAA+GGG - chr2_2:44869590-44869609 Msa0253240:three_prime_UTR 20.0%
!!! ACAGTATTTTGTACTAAATA+AGG + chr2_2:44869695-44869714 None:intergenic 20.0%
!!! TGATATATTTCATCTCATTT+TGG - chr2_2:44869942-44869961 Msa0253240:intron 20.0%
!!! CATGAAATAGTCATTTTATT+TGG + chr2_2:44870101-44870120 None:intergenic 20.0%
!! CAAATAAAATGACTATTTCA+TGG - chr2_2:44870099-44870118 Msa0253240:intron 20.0%
!!! TTCTTTATTACCTTTTTAAC+TGG - chr2_2:44870475-44870494 Msa0253240:intron 20.0%
!!! TCTTTATTACCTTTTTAACT+GGG - chr2_2:44870476-44870495 Msa0253240:intron 20.0%
!! ACTATTACAATGTAAAACAT+GGG - chr2_2:44870649-44870668 Msa0253240:three_prime_UTR 20.0%
!! TAAGATTCTTAGTAAAAAGA+AGG - chr2_2:44870696-44870715 Msa0253240:intron 20.0%
!! CTTATGCTATAATTAAGTTA+AGG - chr2_2:44871284-44871303 Msa0253240:intron 20.0%
!!! CTATTTTTAATCTTCCATAT+AGG - chr2_2:44871316-44871335 Msa0253240:intron 20.0%
!!! TAGAACTTTAGAATTTTGAA+TGG + chr2_2:44871420-44871439 None:intergenic 20.0%
!!! AAAATTCTAAAGTTCTAAGT+TGG - chr2_2:44871423-44871442 Msa0253240:intron 20.0%
!!! AAATTCTAAAGTTCTAAGTT+GGG - chr2_2:44871424-44871443 Msa0253240:intron 20.0%
!! GGTGTATACTTAAATAATTA+CGG + chr2_2:44871923-44871942 None:intergenic 20.0%
!!! AGAACTATTTTTAATCATGT+TGG - chr2_2:44873410-44873429 Msa0253240:intron 20.0%
!! TGTATTATATTTAGTGTGTT+CGG - chr2_2:44873736-44873755 Msa0253240:intron 20.0%
!! CTTAATAACATTCTAAATTG+TGG - chr2_2:44874095-44874114 Msa0253240:five_prime_UTR 20.0%
! TTTAATAAAACAGTGTTTCG+TGG - chr2_2:44867497-44867516 Msa0253240:intron 25.0%
!!! AGTTTCTTTCTGAAAGATTT+TGG - chr2_2:44867558-44867577 Msa0253240:intron 25.0%
!! TTGATTATTTGTACTGATCA+TGG - chr2_2:44867626-44867645 Msa0253240:intron 25.0%
!! TGATTATTTGTACTGATCAT+GGG - chr2_2:44867627-44867646 Msa0253240:intron 25.0%
!! TTGGCTTAGTGTTAATTTTA+AGG - chr2_2:44867944-44867963 Msa0253240:intron 25.0%
! TTCCAGAAAATAAGAAACTT+AGG + chr2_2:44867975-44867994 None:intergenic 25.0%
! CTCTATGTTGTCAAATTTAA+GGG + chr2_2:44868159-44868178 None:intergenic 25.0%
! ATCAAACATATGAAGAATAC+TGG + chr2_2:44868190-44868209 None:intergenic 25.0%
!! AATCATTTTCACTGGATTTA+CGG + chr2_2:44869037-44869056 None:intergenic 25.0%
! NNNAGAACATAGTTTCTACT+AGG - chr2_2:44869298-44869317 Msa0253240:three_prime_UTR 25.0%
! AATAACTAATCAGCAATTCA+AGG + chr2_2:44869583-44869602 None:intergenic 25.0%
!!! GCTGATTAGTTATTTTTGAA+AGG - chr2_2:44869589-44869608 Msa0253240:three_prime_UTR 25.0%
!!! TATTTTTGAAAGGGTATTGT+CGG - chr2_2:44869599-44869618 Msa0253240:three_prime_UTR 25.0%
!! TATTCATCAAAACCTCTTTT+TGG + chr2_2:44869863-44869882 None:intergenic 25.0%
! GAAAGATGATAAAGTTAAAC+AGG + chr2_2:44869898-44869917 None:intergenic 25.0%
!!! TGTAACTTCGTTTTATTCTA+TGG - chr2_2:44870375-44870394 Msa0253240:intron 25.0%
!!! ATTTTTCAGTTGTTTCATAC+TGG + chr2_2:44870560-44870579 None:intergenic 25.0%
! GACTATTACAATGTAAAACA+TGG - chr2_2:44870648-44870667 Msa0253240:three_prime_UTR 25.0%
! AATCTTACACAGACAATATA+AGG + chr2_2:44870683-44870702 None:intergenic 25.0%
! GTAGTTACAAATAAGAGTTT+AGG - chr2_2:44870810-44870829 Msa0253240:intron 25.0%
! AATATGCTGAAAACAACTAA+TGG + chr2_2:44871166-44871185 None:intergenic 25.0%
!!! TTCTTTTTCATAAGCTATTC+TGG + chr2_2:44871201-44871220 None:intergenic 25.0%
!! TACTACAAGGTATTCATTTA+AGG - chr2_2:44871478-44871497 Msa0253240:intron 25.0%
!!! CTTATTTTACAGTGAAAGAT+GGG - chr2_2:44871566-44871585 Msa0253240:intron 25.0%
!!! AGCTTTTTCAAGAATTTCAA+AGG - chr2_2:44871682-44871701 Msa0253240:intron 25.0%
!!! GACTGCTAAATTTTAGAAAA+TGG + chr2_2:44872210-44872229 None:intergenic 25.0%
!!! TTTCTAAAATTTAGCAGTCA+TGG - chr2_2:44872211-44872230 Msa0253240:intron 25.0%
! TTCAACTGAACTATGATTAT+GGG + chr2_2:44872331-44872350 None:intergenic 25.0%
! TTTCAACTGAACTATGATTA+TGG + chr2_2:44872332-44872351 None:intergenic 25.0%
! ATTTACATAACCTGTTTATC+AGG - chr2_2:44872618-44872637 Msa0253240:intron 25.0%
! TCTTTATTAACCTGATAAAC+AGG + chr2_2:44872631-44872650 None:intergenic 25.0%
! TGTTTATCAGGTTAATAAAG+AGG - chr2_2:44872630-44872649 Msa0253240:intron 25.0%
! GTAGTATTGTTTGTTTCAAA+TGG + chr2_2:44872739-44872758 None:intergenic 25.0%
! AATACTTACTTCCTTGTTAA+TGG - chr2_2:44872882-44872901 Msa0253240:CDS 25.0%
! TTAGTATTCTTCCATTAACA+AGG + chr2_2:44872896-44872915 None:intergenic 25.0%
! CTAAGACATAAGTACTTATT+TGG + chr2_2:44873164-44873183 None:intergenic 25.0%
! ATACTTCAACTATAAACAAC+TGG + chr2_2:44873609-44873628 None:intergenic 25.0%
!! TATATTAAACAAGTTTTCCG+AGG + chr2_2:44873701-44873720 None:intergenic 25.0%
! AATATAATACAACGATGTCT+TGG + chr2_2:44873727-44873746 None:intergenic 25.0%
! AAGCAAATATCACAAAACTT+TGG - chr2_2:44874017-44874036 Msa0253240:CDS 25.0%
!! TGTTATTAAGCACAACTTTT+AGG + chr2_2:44874085-44874104 None:intergenic 25.0%
TGAATTGGTTAGAAAAAGAG+AGG + chr2_2:44866995-44867014 None:intergenic 30.0%
ATAGGAAAAGAACCTTCTTT+GGG + chr2_2:44867177-44867196 None:intergenic 30.0%
AATAGGAAAAGAACCTTCTT+TGG + chr2_2:44867178-44867197 None:intergenic 30.0%
ATAACAGATAACAGATACAG+TGG + chr2_2:44867339-44867358 None:intergenic 30.0%
! CTAATTTGAGTGTTTCTGAT+TGG - chr2_2:44867598-44867617 Msa0253240:intron 30.0%
GAGCATAACACAATTAAAGT+TGG - chr2_2:44867887-44867906 Msa0253240:intron 30.0%
GTTACTGGAATTCATTTCAT+TGG - chr2_2:44867925-44867944 Msa0253240:intron 30.0%
!!! GTCCTAAGTTTCTTATTTTC+TGG - chr2_2:44867970-44867989 Msa0253240:intron 30.0%
GCTCTATGTTGTCAAATTTA+AGG + chr2_2:44868160-44868179 None:intergenic 30.0%
TAAATTTGACAACATAGAGC+AGG - chr2_2:44868160-44868179 Msa0253240:intron 30.0%
TATTACCTCTCATTTAGTCA+AGG - chr2_2:44868449-44868468 Msa0253240:intron 30.0%
! GTTTCTTCCATTTTCAACAT+CGG - chr2_2:44868795-44868814 Msa0253240:intron 30.0%
!!! AGAATAGTTTTTTCTCTGAC+TGG - chr2_2:44868878-44868897 Msa0253240:intron 30.0%
CAAAATCTTGGTCAGTTTAA+AGG - chr2_2:44869161-44869180 Msa0253240:intron 30.0%
AGCAATTCAAGGAAAAAAAG+CGG + chr2_2:44869572-44869591 None:intergenic 30.0%
ATTAACATGTTGCTAAGAAG+AGG - chr2_2:44869825-44869844 Msa0253240:intron 30.0%
!! CATTTTATTTGGTCCATAGA+TGG + chr2_2:44870090-44870109 None:intergenic 30.0%
ATCAATCTTCCCAGTTAAAA+AGG + chr2_2:44870488-44870507 None:intergenic 30.0%
CATAACTTCGTGAATGAAAA+AGG + chr2_2:44870526-44870545 None:intergenic 30.0%
GAAACAACTGAAAAATAGCT+TGG - chr2_2:44870564-44870583 Msa0253240:intron 30.0%
! ATAAGAGTTTAGGACAATGA+AGG - chr2_2:44870820-44870839 Msa0253240:intron 30.0%
! TAAGAGTTTAGGACAATGAA+GGG - chr2_2:44870821-44870840 Msa0253240:intron 30.0%
AATTGGGGTTATTTGTCAAT+AGG - chr2_2:44870844-44870863 Msa0253240:intron 30.0%
AAACTAGAATATACGCGTAA+GGG + chr2_2:44871043-44871062 None:intergenic 30.0%
AAAACTAGAATATACGCGTA+AGG + chr2_2:44871044-44871063 None:intergenic 30.0%
ATTCCATTTATAGCGTTGTT+TGG - chr2_2:44871073-44871092 Msa0253240:intron 30.0%
AATCCAAACAACGCTATAAA+TGG + chr2_2:44871079-44871098 None:intergenic 30.0%
! TTATATTTTGTGAGACTGTC+TGG - chr2_2:44871112-44871131 Msa0253240:intron 30.0%
! TATATTTTGTGAGACTGTCT+GGG - chr2_2:44871113-44871132 Msa0253240:intron 30.0%
TTAATCTTCCATATAGGAGT+AGG - chr2_2:44871322-44871341 Msa0253240:intron 30.0%
TATGTTCAGATTCCAGTTAA+AGG - chr2_2:44871389-44871408 Msa0253240:intron 30.0%
ATGAATACCTTGTAGTAGAA+CGG + chr2_2:44871475-44871494 None:intergenic 30.0%
! TTCAGTTTTCATTGCTTACA+GGG - chr2_2:44871536-44871555 Msa0253240:intron 30.0%
CCATCTTTCACTGTAAAATA+AGG + chr2_2:44871568-44871587 None:intergenic 30.0%
!!! CCTTATTTTACAGTGAAAGA+TGG - chr2_2:44871565-44871584 Msa0253240:intron 30.0%
! AGAGAGTATAATTGCTCAAA+CGG - chr2_2:44871614-44871633 Msa0253240:three_prime_UTR 30.0%
TTATTCAATGTAACGTCTGA+GGG + chr2_2:44871651-44871670 None:intergenic 30.0%
TTTATTCAATGTAACGTCTG+AGG + chr2_2:44871652-44871671 None:intergenic 30.0%
AGACGTTACATTGAATAAAG+TGG - chr2_2:44871653-44871672 Msa0253240:intron 30.0%
TTTCAAGAATTTCAAAGGAC+AGG - chr2_2:44871687-44871706 Msa0253240:intron 30.0%
TTCAAGAATTTCAAAGGACA+GGG - chr2_2:44871688-44871707 Msa0253240:intron 30.0%
CTATAGTAAGTTCAACAAAG+AGG + chr2_2:44871972-44871991 None:intergenic 30.0%
! GCAAGTTAAGTAAGTTGAAA+AGG - chr2_2:44871991-44872010 Msa0253240:intron 30.0%
TCACTCATTGAGTCAAATAA+CGG - chr2_2:44872084-44872103 Msa0253240:intron 30.0%
!! GTGTGCTTTTTATTAACTGA+TGG - chr2_2:44872182-44872201 Msa0253240:intron 30.0%
CACAGACTGTTTAATAAAGA+CGG + chr2_2:44872303-44872322 None:intergenic 30.0%
GAAAGTAAATCCCAAAATCA+TGG - chr2_2:44872528-44872547 Msa0253240:intron 30.0%
! GCTTAAAATGCCATGATTTT+GGG + chr2_2:44872541-44872560 None:intergenic 30.0%
! AGCTTAAAATGCCATGATTT+TGG + chr2_2:44872542-44872561 None:intergenic 30.0%
TTAATAAAGAGGTCCATGTT+TGG - chr2_2:44872641-44872660 Msa0253240:intron 30.0%
! TAAGGCATTAGATAACAAGA+AGG - chr2_2:44872677-44872696 Msa0253240:intron 30.0%
CATTAGATAACAAGAAGGTT+TGG - chr2_2:44872682-44872701 Msa0253240:intron 30.0%
TCTAGAAACTGAATTCGTAT+AGG - chr2_2:44872929-44872948 Msa0253240:CDS 30.0%
!! CTTATTTTCATAAGTTCTGC+AGG + chr2_2:44873259-44873278 None:intergenic 30.0%
!!! AAACACTTTTGAGACAGTTT+GGG + chr2_2:44873328-44873347 None:intergenic 30.0%
!!! TAAACACTTTTGAGACAGTT+TGG + chr2_2:44873329-44873348 None:intergenic 30.0%
!! ATCATGTTGGTTGATTTTGT+AGG - chr2_2:44873423-44873442 Msa0253240:intron 30.0%
!! TCATGTTGGTTGATTTTGTA+GGG - chr2_2:44873424-44873443 Msa0253240:intron 30.0%
! CTAGAAATGATAATGTTCCA+AGG + chr2_2:44873637-44873656 None:intergenic 30.0%
!! ATTTCTAGTTCTCCAAACTT+GGG - chr2_2:44873649-44873668 Msa0253240:intron 30.0%
ATTAAATTCACACCCAAGTT+TGG + chr2_2:44873664-44873683 None:intergenic 30.0%
!!! AATCTGGTTTACTTTTTCCT+CGG - chr2_2:44873681-44873700 Msa0253240:intron 30.0%
! GAGCTTCTAAAAATTACAGT+GGG - chr2_2:44873798-44873817 Msa0253240:CDS 30.0%
AACAGTGGAAAAAGTCATCA+TGG + chr2_2:44866835-44866854 None:intergenic 35.0%
!!! AGTCATTGTTTTTTGGCTGT+TGG + chr2_2:44866918-44866937 None:intergenic 35.0%
!!! CAGTGGAAGTCATTGTTTTT+TGG + chr2_2:44866925-44866944 None:intergenic 35.0%
AATGACTTCCACTGTCTTTA+AGG - chr2_2:44866931-44866950 Msa0253240:three_prime_UTR 35.0%
! TTTGAAATGGTTGCAGTTTC+AGG - chr2_2:44867068-44867087 Msa0253240:three_prime_UTR 35.0%
!! TAAATTGGTGTTGTCAATCG+TGG - chr2_2:44867267-44867286 Msa0253240:three_prime_UTR 35.0%
!! AAATTGGTGTTGTCAATCGT+GGG - chr2_2:44867268-44867287 Msa0253240:three_prime_UTR 35.0%
!!! ACTATTTTTTAGTGCGAACC+AGG + chr2_2:44867453-44867472 None:intergenic 35.0%
TATTTCCGTCTGAATGTTAC+TGG - chr2_2:44867910-44867929 Msa0253240:intron 35.0%
GAATTCCAGTAACATTCAGA+CGG + chr2_2:44867918-44867937 None:intergenic 35.0%
TCTAGAGAGAAAACTGAAGA+TGG - chr2_2:44867996-44868015 Msa0253240:intron 35.0%
CTAGAGAGAAAACTGAAGAT+GGG - chr2_2:44867997-44868016 Msa0253240:intron 35.0%
! TTTTTGCGCTGTACATAGTA+TGG - chr2_2:44868212-44868231 Msa0253240:intron 35.0%
GTACATAGTATGGCATAGAT+TGG - chr2_2:44868222-44868241 Msa0253240:intron 35.0%
CTTTGTGCTTTCAGTAATGT+TGG - chr2_2:44868255-44868274 Msa0253240:intron 35.0%
!! TCAGTAATGTTGGTGGTTAT+TGG - chr2_2:44868265-44868284 Msa0253240:intron 35.0%
TGCAATGTTTGTAAACATGC+TGG + chr2_2:44868325-44868344 None:intergenic 35.0%
ATCAGTGAGATGAAAAGTAG+AGG + chr2_2:44868477-44868496 None:intergenic 35.0%
! TTTTGTGTGCTAATGACAAG+TGG - chr2_2:44868536-44868555 Msa0253240:intron 35.0%
! AGGAACTTTTTATTGGACAG+GGG + chr2_2:44868587-44868606 None:intergenic 35.0%
! CAGGAACTTTTTATTGGACA+GGG + chr2_2:44868588-44868607 None:intergenic 35.0%
! ACTTTAGATTGAAAGCGTGT+TGG - chr2_2:44868644-44868663 Msa0253240:intron 35.0%
! CTTTAGATTGAAAGCGTGTT+GGG - chr2_2:44868645-44868664 Msa0253240:intron 35.0%
!!! CTCTGACTGGCATATTTTTT+AGG - chr2_2:44868891-44868910 Msa0253240:intron 35.0%
!!! GACTGGCATATTTTTTAGGA+AGG - chr2_2:44868895-44868914 Msa0253240:intron 35.0%
TTGCATATAGAATTCATGCC+TGG + chr2_2:44869448-44869467 None:intergenic 35.0%
GGTTGAATGATGAGAAATTG+TGG - chr2_2:44869117-44869136 Msa0253240:intron 35.0%
GAGAAATTGTGGTCATTGAT+AGG - chr2_2:44869128-44869147 Msa0253240:intron 35.0%
ATGAATGTGCTTTCTATCCT+TGG - chr2_2:44869357-44869376 Msa0253240:three_prime_UTR 35.0%
GGCATGAATTCTATATGCAA+AGG + chr2_2:44868946-44868965 None:intergenic 35.0%
TTGCATATAGAATTCATGCC+TGG - chr2_2:44869448-44869467 Msa0253240:intron 35.0%
GAGCAAAAATGATTGGAGAA+GGG - chr2_2:44869470-44869489 Msa0253240:three_prime_UTR 35.0%
!! AAGCTTATTGGCTTAGCAAT+TGG + chr2_2:44869509-44869528 None:intergenic 35.0%
! AGGTGCTACAATTCTTACTT+TGG - chr2_2:44869532-44869551 Msa0253240:three_prime_UTR 35.0%
!! TTGTCGGTGTTGTTAAATAG+TGG - chr2_2:44869615-44869634 Msa0253240:intron 35.0%
ATACTGTCAAATAGAAGCTG+TGG - chr2_2:44869708-44869727 Msa0253240:intron 35.0%
ATACAAGTGAAGCCAAAAAG+AGG - chr2_2:44869848-44869867 Msa0253240:intron 35.0%
AGAGATGAATAGTCCATCTA+TGG - chr2_2:44870074-44870093 Msa0253240:intron 35.0%
! TGATGTTTTACACTCAGCTA+TGG - chr2_2:44870215-44870234 Msa0253240:intron 35.0%
AAACCATTTCATCTCATGCT+TGG - chr2_2:44870438-44870457 Msa0253240:intron 35.0%
AAACCAAGCATGAGATGAAA+TGG + chr2_2:44870444-44870463 None:intergenic 35.0%
! TTTCATCTCATGCTTGGTTT+TGG - chr2_2:44870444-44870463 Msa0253240:intron 35.0%
CCTCTTGGATTAATCACAAT+GGG + chr2_2:44870725-44870744 None:intergenic 35.0%
CCATTGTGATTAATCCAAGA+GGG - chr2_2:44870723-44870742 Msa0253240:intron 35.0%
TTATGCAGCAGCTATGAAAT+GGG - chr2_2:44870759-44870778 Msa0253240:intron 35.0%
! TTTAGGACAATGAAGGGAAT+TGG - chr2_2:44870827-44870846 Msa0253240:intron 35.0%
TTAGGACAATGAAGGGAATT+GGG - chr2_2:44870828-44870847 Msa0253240:intron 35.0%
! TTATTTGTCAATAGGTTGGC+TGG - chr2_2:44870852-44870871 Msa0253240:intron 35.0%
! TATTTGTCAATAGGTTGGCT+GGG - chr2_2:44870853-44870872 Msa0253240:intron 35.0%
TGAGAATAACTTCTGCAGAT+TGG + chr2_2:44870972-44870991 None:intergenic 35.0%
AGGATTGTGGTGTAAAATCA+AGG - chr2_2:44871342-44871361 Msa0253240:intron 35.0%
! GTTCAGTTTTCATTGCTTAC+AGG - chr2_2:44871535-44871554 Msa0253240:intron 35.0%
! GAGAGTATAATTGCTCAAAC+GGG - chr2_2:44871615-44871634 Msa0253240:three_prime_UTR 35.0%
TCAAGAATTTCAAAGGACAG+GGG - chr2_2:44871689-44871708 Msa0253240:intron 35.0%
!! CTATGGGCTTTTCTGAAAAA+AGG + chr2_2:44871729-44871748 None:intergenic 35.0%
! TTTTCAGAAAAGCCCATAGA+TGG - chr2_2:44871730-44871749 Msa0253240:intron 35.0%
AAGATTGACGAACCATCTAT+GGG + chr2_2:44871745-44871764 None:intergenic 35.0%
TGAATGCTATTCACATGTCA+TGG - chr2_2:44871768-44871787 Msa0253240:three_prime_UTR 35.0%
AACTTGAGATAGTTCTCTCA+AGG + chr2_2:44871838-44871857 None:intergenic 35.0%
! CCACTTGGAATACTAGATTT+TGG + chr2_2:44872053-44872072 None:intergenic 35.0%
CCAAAATCTAGTATTCCAAG+TGG - chr2_2:44872050-44872069 Msa0253240:intron 35.0%
CACTCATTGAGTCAAATAAC+GGG - chr2_2:44872085-44872104 Msa0253240:intron 35.0%
! AGCACAATCTGAAAGGATTT+TGG - chr2_2:44872237-44872256 Msa0253240:intron 35.0%
CATTTCGTGAAAAAGAGAGA+TGG - chr2_2:44872277-44872296 Msa0253240:intron 35.0%
TCAGGGTTTAGTGTAAATTC+TGG + chr2_2:44872375-44872394 None:intergenic 35.0%
!! TTGAGAGAGTTTGTTGTTTC+TGG + chr2_2:44872479-44872498 None:intergenic 35.0%
! GCATTTTAAGCTATTGAGTC+TGG - chr2_2:44872550-44872569 Msa0253240:intron 35.0%
TGTAAATGTAACCAGCAAGA+TGG + chr2_2:44872605-44872624 None:intergenic 35.0%
!! TTTTGAAGAGAGGTTTCTGA+GGG + chr2_2:44872770-44872789 None:intergenic 35.0%
!!! CTCTATATGGTTTTGAAGAG+AGG + chr2_2:44872780-44872799 None:intergenic 35.0%
CGAATGTAGAGTTCTCTATA+TGG + chr2_2:44872793-44872812 None:intergenic 35.0%
CGTCAATAACTAGTTGGTTA+GGG + chr2_2:44872820-44872839 None:intergenic 35.0%
TCGTCAATAACTAGTTGGTT+AGG + chr2_2:44872821-44872840 None:intergenic 35.0%
AGAGTTCGTCAATAACTAGT+TGG + chr2_2:44872826-44872845 None:intergenic 35.0%
ATGCATATTTACGTCTTGTG+TGG - chr2_2:44873099-44873118 Msa0253240:intron 35.0%
!! CATGTTGGTTGATTTTGTAG+GGG - chr2_2:44873425-44873444 Msa0253240:intron 35.0%
! CCAAAGACATTTTTCCTCTT+GGG + chr2_2:44873477-44873496 None:intergenic 35.0%
CCAAGAGGAAAAATGTCTTT+GGG - chr2_2:44873475-44873494 Msa0253240:intron 35.0%
!! TAGTTGAAGTATTGAAGCCT+TGG - chr2_2:44873617-44873636 Msa0253240:intron 35.0%
!! CATTTCTAGTTCTCCAAACT+TGG - chr2_2:44873648-44873667 Msa0253240:intron 35.0%
ACTTGGGTGTGAATTTAATC+TGG - chr2_2:44873665-44873684 Msa0253240:intron 35.0%
GGAGAACATGAAATTTACGA+TGG - chr2_2:44873757-44873776 Msa0253240:intron 35.0%
ATGGACCAAATGCTACATAT+TGG - chr2_2:44873776-44873795 Msa0253240:CDS 35.0%
AAGCTCCAATATGTAGCATT+TGG + chr2_2:44873784-44873803 None:intergenic 35.0%
! GGAGCTTCTAAAAATTACAG+TGG - chr2_2:44873797-44873816 Msa0253240:CDS 35.0%
! TTCCTTTTCTTGAAGTCTCA+TGG + chr2_2:44873997-44874016 None:intergenic 35.0%
AGTGGAAAAAGTCATCATGG+TGG + chr2_2:44866832-44866851 None:intergenic 40.0%
CTGGAAAGTAGTTGTAACAG+TGG + chr2_2:44866850-44866869 None:intergenic 40.0%
TGAATAGAGAGAGAAAGAGC+TGG + chr2_2:44866869-44866888 None:intergenic 40.0%
!! TGTCTTTAAGGTTGCTGTGT+TGG - chr2_2:44866943-44866962 Msa0253240:three_prime_UTR 40.0%
!! GTCTTTAAGGTTGCTGTGTT+GGG - chr2_2:44866944-44866963 Msa0253240:three_prime_UTR 40.0%
GCATCAACTCTTGCTAGAAA+TGG - chr2_2:44867101-44867120 Msa0253240:three_prime_UTR 40.0%
ATAGTGTATCCTAGCCATTG+CGG - chr2_2:44867379-44867398 Msa0253240:three_prime_UTR 40.0%
TCTTGTGAAAGACCTTCCTA+GGG + chr2_2:44867654-44867673 None:intergenic 40.0%
ATCTTGTGAAAGACCTTCCT+AGG + chr2_2:44867655-44867674 None:intergenic 40.0%
CACAAGATTTATGTCTCTGC+TGG - chr2_2:44867667-44867686 Msa0253240:intron 40.0%
AGAGAAAACTGAAGATGGGA+AGG - chr2_2:44868001-44868020 Msa0253240:intron 40.0%
GCTGAATGGAGAGAAAAGTT+TGG - chr2_2:44868116-44868135 Msa0253240:intron 40.0%
TGTGCTTTCAGTAATGTTGG+TGG - chr2_2:44868258-44868277 Msa0253240:intron 40.0%
GGTGAGAGTTAACAACTCTA+AGG + chr2_2:44868304-44868323 None:intergenic 40.0%
AGGAACCTTGACTAAATGAG+AGG + chr2_2:44868457-44868476 None:intergenic 40.0%
! ACTTTTTATTGGACAGGGGA+GGG + chr2_2:44868583-44868602 None:intergenic 40.0%
! AACTTTTTATTGGACAGGGG+AGG + chr2_2:44868584-44868603 None:intergenic 40.0%
! CCAGGAACTTTTTATTGGAC+AGG + chr2_2:44868589-44868608 None:intergenic 40.0%
CCTGTCCAATAAAAAGTTCC+TGG - chr2_2:44868586-44868605 Msa0253240:intron 40.0%
TCCAATAAAAAGTTCCTGGC+TGG - chr2_2:44868590-44868609 Msa0253240:intron 40.0%
! ACCAGCCAGGAACTTTTTAT+TGG + chr2_2:44868594-44868613 None:intergenic 40.0%
GATATTTATAGTCACCAGCC+AGG + chr2_2:44868607-44868626 None:intergenic 40.0%
! ACGCTTTCAATCTAAAGTGC+CGG + chr2_2:44868642-44868661 None:intergenic 40.0%
AATGCCGACATGAGTAATGT+CGG + chr2_2:44868674-44868693 None:intergenic 40.0%
TGCATAGCCGATGTTGAAAA+TGG + chr2_2:44868805-44868824 None:intergenic 40.0%
AATCTGATCCTGAATGCACT+AGG + chr2_2:44868854-44868873 None:intergenic 40.0%
AGGACTAAGCAAGAGATTTG+TGG - chr2_2:44868915-44868934 Msa0253240:intron 40.0%
GGACTAAGCAAGAGATTTGT+GGG - chr2_2:44868916-44868935 Msa0253240:intron 40.0%
! AAAGCATTATGCAACGAGAG+TGG - chr2_2:44868964-44868983 Msa0253240:intron 40.0%
TTAGGTGTGGAAAGCAAGTT+TGG - chr2_2:44869071-44869090 Msa0253240:intron 40.0%
!! TGGGTATTGGAAGAGTTGAA+TGG - chr2_2:44869096-44869115 Msa0253240:intron 40.0%
ATTGTGGTCATTGATAGGTG+TGG - chr2_2:44869133-44869152 Msa0253240:intron 40.0%
! GAAAGCACATTCATACCAAG+TGG + chr2_2:44869351-44869370 None:intergenic 40.0%
ATCAGAGACAAAGAGATCCA+AGG + chr2_2:44869377-44869396 None:intergenic 40.0%
ATGCCTGGAGCAAAAATGAT+TGG - chr2_2:44869463-44869482 Msa0253240:intron 40.0%
!! TCTCCAATCATTTTTGCTCC+AGG + chr2_2:44869469-44869488 None:intergenic 40.0%
GGAGCAAAAATGATTGGAGA+AGG - chr2_2:44869469-44869488 Msa0253240:intron 40.0%
! GCTAAGCCAATAAGCTTGTT+AGG - chr2_2:44869512-44869531 Msa0253240:three_prime_UTR 40.0%
GTAGCACCTAACAAGCTTAT+TGG + chr2_2:44869521-44869540 None:intergenic 40.0%
TTCCAACTTCGCTAAGCTAT+GGG + chr2_2:44869649-44869668 None:intergenic 40.0%
CAATAATATAGCGTCGCTAC+AGG + chr2_2:44869734-44869753 None:intergenic 40.0%
AAGATGCAGCACTAAGATCA+AGG + chr2_2:44869920-44869939 None:intergenic 40.0%
ACTCAGCTATGGAATTTGTG+TGG - chr2_2:44870226-44870245 Msa0253240:intron 40.0%
! TGCAACTTTTCTGACAACTG+AGG + chr2_2:44870272-44870291 None:intergenic 40.0%
ATTTGCAGAGCCTTTGTCAA+CGG - chr2_2:44870331-44870350 Msa0253240:intron 40.0%
CTTCATCATACCGTTGACAA+AGG + chr2_2:44870344-44870363 None:intergenic 40.0%
GCTAATACGTGAGCTTTACA+TGG - chr2_2:44870401-44870420 Msa0253240:intron 40.0%
CAACTGAAAAATAGCTTGGC+AGG - chr2_2:44870568-44870587 Msa0253240:intron 40.0%
CTTGGATTAATCACAATGGG+AGG + chr2_2:44870722-44870741 None:intergenic 40.0%
CCCATTGTGATTAATCCAAG+AGG - chr2_2:44870722-44870741 Msa0253240:intron 40.0%
CCCTCTTGGATTAATCACAA+TGG + chr2_2:44870726-44870745 None:intergenic 40.0%
GTTATGCAGCAGCTATGAAA+TGG - chr2_2:44870758-44870777 Msa0253240:intron 40.0%
TAGGACAATGAAGGGAATTG+GGG - chr2_2:44870829-44870848 Msa0253240:intron 40.0%
GGGGTTATTTGTCAATAGGT+TGG - chr2_2:44870848-44870867 Msa0253240:intron 40.0%
AGACTCTAATTCCTAGAGGT+TGG - chr2_2:44870883-44870902 Msa0253240:intron 40.0%
GACTCTAATTCCTAGAGGTT+GGG - chr2_2:44870884-44870903 Msa0253240:intron 40.0%
AGACTGTCTGGGAAAACTTA+TGG - chr2_2:44871124-44871143 Msa0253240:intron 40.0%
TCCATATAGGAGTAGGATTG+TGG - chr2_2:44871329-44871348 Msa0253240:intron 40.0%
ACCACAATCCTACTCCTATA+TGG + chr2_2:44871333-44871352 None:intergenic 40.0%
TGAATGGAGAAGCCTTTAAC+TGG + chr2_2:44871404-44871423 None:intergenic 40.0%
CAAGATTGACGAACCATCTA+TGG + chr2_2:44871746-44871765 None:intergenic 40.0%
CATAGATGGTTCGTCAATCT+TGG - chr2_2:44871744-44871763 Msa0253240:intron 40.0%
TGTCGTGCTAGATACTACAT+AGG + chr2_2:44871872-44871891 None:intergenic 40.0%
TATCTAGCACGACACTTTAC+TGG - chr2_2:44871878-44871897 Msa0253240:intron 40.0%
!! AAGAGGTCCATGTTTTGAAC+CGG + chr2_2:44871955-44871974 None:intergenic 40.0%
!!! GATTTTGGTTTTGACCTCCA+TGG + chr2_2:44872038-44872057 None:intergenic 40.0%
CACCAAGTGTAGGAACATTT+CGG + chr2_2:44872118-44872137 None:intergenic 40.0%
TAGACATGAACACCAAGTGT+AGG + chr2_2:44872128-44872147 None:intergenic 40.0%
ATGGTTGAGCACAATCTGAA+AGG - chr2_2:44872230-44872249 Msa0253240:intron 40.0%
AGACAAACGCAGATGATCAA+AGG - chr2_2:44872403-44872422 Msa0253240:intron 40.0%
! AGATGGCACAATTGTTGTTC+AGG + chr2_2:44872588-44872607 None:intergenic 40.0%
TTTGAAGAGAGGTTTCTGAG+GGG + chr2_2:44872769-44872788 None:intergenic 40.0%
!!! GTTTTGAAGAGAGGTTTCTG+AGG + chr2_2:44872771-44872790 None:intergenic 40.0%
TCTACTCAAACCACTCATCA+CGG - chr2_2:44872843-44872862 Msa0253240:CDS 40.0%
TTATCTTAGACCGTGATGAG+TGG + chr2_2:44872856-44872875 None:intergenic 40.0%
! ATAGGATATGACTTGCACAC+AGG - chr2_2:44872947-44872966 Msa0253240:intron 40.0%
! ATATGACTTGCACACAGGAA+GGG - chr2_2:44872952-44872971 Msa0253240:intron 40.0%
AGACAGTTTGGGAGAACTTA+TGG + chr2_2:44873317-44873336 None:intergenic 40.0%
! CTTCTCTTAGAGAGCATGTT+TGG + chr2_2:44873387-44873406 None:intergenic 40.0%
CCCAAGAGGAAAAATGTCTT+TGG - chr2_2:44873474-44873493 Msa0253240:intron 40.0%
! CCCAAAGACATTTTTCCTCT+TGG + chr2_2:44873478-44873497 None:intergenic 40.0%
! AACAAGAGACTAGCCATATG+TGG - chr2_2:44873503-44873522 Msa0253240:intron 40.0%
! ACAAGAGACTAGCCATATGT+GGG - chr2_2:44873504-44873523 Msa0253240:intron 40.0%
TGTGTTAGTCCCAATGTTGA+AGG - chr2_2:44873533-44873552 Msa0253240:intron 40.0%
TCTATGGCACCTTCAACATT+GGG + chr2_2:44873545-44873564 None:intergenic 40.0%
ATCTATGGCACCTTCAACAT+TGG + chr2_2:44873546-44873565 None:intergenic 40.0%
GTGGGAGAACTATAAACTCA+AGG - chr2_2:44873816-44873835 Msa0253240:CDS 40.0%
GGAGAACTATAAACTCAAGG+TGG - chr2_2:44873819-44873838 Msa0253240:CDS 40.0%
GACCATGAGACTTCAAGAAA+AGG - chr2_2:44873992-44874011 Msa0253240:CDS 40.0%
GGAAAAAGTCATCATGGTGG+TGG + chr2_2:44866829-44866848 None:intergenic 45.0%
CACAGCAACCTTAAAGACAG+TGG + chr2_2:44866942-44866961 None:intergenic 45.0%
! TTTAAGGTTGCTGTGTTGGG+TGG - chr2_2:44866947-44866966 Msa0253240:three_prime_UTR 45.0%
ACACTCTTTGAGTCTGCTAG+AGG - chr2_2:44867134-44867153 Msa0253240:three_prime_UTR 45.0%
!! TGGTGCTATAGACTATTGCC+GGG + chr2_2:44867319-44867338 None:intergenic 45.0%
!! GTGGTGCTATAGACTATTGC+CGG + chr2_2:44867320-44867339 None:intergenic 45.0%
!! AAGGAGCTGCATTTTGACCA+TGG - chr2_2:44868020-44868039 Msa0253240:intron 45.0%
!! GGCTTGCTAACCGAGAAAAA+CGG + chr2_2:44868050-44868069 None:intergenic 45.0%
! TGGCTCGTCTAGTTCAAGAA+TGG - chr2_2:44868075-44868094 Msa0253240:intron 45.0%
! GGCTCGTCTAGTTCAAGAAT+GGG - chr2_2:44868076-44868095 Msa0253240:intron 45.0%
TAGTTCAAGAATGGGAGTCG+AGG - chr2_2:44868084-44868103 Msa0253240:intron 45.0%
AGTTCAAGAATGGGAGTCGA+GGG - chr2_2:44868085-44868104 Msa0253240:intron 45.0%
! CTTTTTATTGGACAGGGGAG+GGG + chr2_2:44868582-44868601 None:intergenic 45.0%
GTGTCCGACATTACTCATGT+CGG - chr2_2:44868667-44868686 Msa0253240:intron 45.0%
! ACATCGGCTATGCATGTACA+AGG - chr2_2:44868811-44868830 Msa0253240:intron 45.0%
TGACAAAGCCTAGTGCATTC+AGG - chr2_2:44868843-44868862 Msa0253240:intron 45.0%
AAGAGATTTGTGGGTGTTCC+AGG - chr2_2:44868925-44868944 Msa0253240:intron 45.0%
! TGTGGAAAGCAAGTTTGGTG+TGG - chr2_2:44869076-44869095 Msa0253240:intron 45.0%
!! GTGGAAAGCAAGTTTGGTGT+GGG - chr2_2:44869077-44869096 Msa0253240:intron 45.0%
!! AGCAAGTTTGGTGTGGGTAT+TGG - chr2_2:44869083-44869102 Msa0253240:intron 45.0%
TGGTCATTGATAGGTGTGGA+TGG - chr2_2:44869137-44869156 Msa0253240:intron 45.0%
GGTGTGGATGGACAAAATCT+TGG - chr2_2:44869149-44869168 Msa0253240:intron 45.0%
ACTAGGATTGCAGATGTCAC+AGG - chr2_2:44869315-44869334 Msa0253240:three_prime_UTR 45.0%
AGCACATTCATACCAAGTGG+TGG + chr2_2:44869348-44869367 None:intergenic 45.0%
GTTCCAACTTCGCTAAGCTA+TGG + chr2_2:44869650-44869669 None:intergenic 45.0%
TCTCTGATCGATACCAACCA+CGG - chr2_2:44870125-44870144 Msa0253240:intron 45.0%
ACTGCGAAACATGGCTTAAC+AGG + chr2_2:44870302-44870321 None:intergenic 45.0%
GCTTGGCAGGATTAAGTTTG+TGG - chr2_2:44870581-44870600 Msa0253240:intron 45.0%
! ACTTTTGTCTCATGCCCTCT+TGG + chr2_2:44870740-44870759 None:intergenic 45.0%
GGCTAGACTCTAATTCCTAG+AGG - chr2_2:44870879-44870898 Msa0253240:intron 45.0%
GAGTAACTAACCCAACCTCT+AGG + chr2_2:44870897-44870916 None:intergenic 45.0%
! GCAGATTGGCTACAAGAACT+GGG + chr2_2:44870958-44870977 None:intergenic 45.0%
! TGCAGATTGGCTACAAGAAC+TGG + chr2_2:44870959-44870978 None:intergenic 45.0%
CACGACACTTTACTGGATAG+TGG - chr2_2:44871885-44871904 Msa0253240:intron 45.0%
AGTATACACCTAAGTGCACC+CGG - chr2_2:44871933-44871952 Msa0253240:intron 45.0%
!! AGAGGTCCATGTTTTGAACC+GGG + chr2_2:44871954-44871973 None:intergenic 45.0%
GTGAAACAAACACTGCCACT+TGG + chr2_2:44872068-44872087 None:intergenic 45.0%
CAAGTGTAGGAACATTTCGG+AGG + chr2_2:44872115-44872134 None:intergenic 45.0%
CTCCGAAATGTTCCTACACT+TGG - chr2_2:44872113-44872132 Msa0253240:intron 45.0%
CGTTTGTCTCGCTCTATTCA+GGG + chr2_2:44872392-44872411 None:intergenic 45.0%
CGCAGATGATCAAAGGAAGA+AGG - chr2_2:44872410-44872429 Msa0253240:intron 45.0%
GTCAGCTCAAGCATAGATGT+TGG + chr2_2:44872449-44872468 None:intergenic 45.0%
! GGCACAATTGTTGTTCAGGA+TGG + chr2_2:44872584-44872603 None:intergenic 45.0%
CAACAATTGTGCCATCTTGC+TGG - chr2_2:44872591-44872610 Msa0253240:intron 45.0%
TTTGGACCAGATGCATGCTA+AGG - chr2_2:44872659-44872678 Msa0253240:intron 45.0%
CTAATGCCTTAGCATGCATC+TGG + chr2_2:44872668-44872687 None:intergenic 45.0%
! GAGCTTTCTCTGGCTTATGA+AGG + chr2_2:44872710-44872729 None:intergenic 45.0%
! GATATGACTTGCACACAGGA+AGG - chr2_2:44872951-44872970 Msa0253240:intron 45.0%
! CAAGAGACTAGCCATATGTG+GGG - chr2_2:44873505-44873524 Msa0253240:intron 45.0%
AACACAGAAGTCCCCACATA+TGG + chr2_2:44873519-44873538 None:intergenic 45.0%
!! GTTGAAGGTGCCATAGATAG+TGG - chr2_2:44873548-44873567 Msa0253240:intron 45.0%
!! AGGTGCCATAGATAGTGGAT+TGG - chr2_2:44873553-44873572 Msa0253240:intron 45.0%
TGCTGCCAATCCACTATCTA+TGG + chr2_2:44873561-44873580 None:intergenic 45.0%
!! CAGCTATAGTAGACTAGCCT+TGG + chr2_2:44873863-44873882 None:intergenic 45.0%
!!! CTATTTTTTATTTATTTAAT+GGG - chr2_2:44867193-44867212 Msa0253240:three_prime_UTR 5.0%
! TGTACTGATCATGGGACCCT+AGG - chr2_2:44867635-44867654 Msa0253240:intron 50.0%
!! CCATGGTGCTCCGTTTTTCT+CGG - chr2_2:44868037-44868056 Msa0253240:intron 50.0%
TGAACTAGACGAGCCACTTC+AGG + chr2_2:44868071-44868090 None:intergenic 50.0%
GTTCAAGAATGGGAGTCGAG+GGG - chr2_2:44868086-44868105 Msa0253240:intron 50.0%
GGCTATGCATGTACAAGGCA+TGG - chr2_2:44868816-44868835 Msa0253240:intron 50.0%
GGATTGCAGATGTCACAGGA+CGG - chr2_2:44869319-44869338 Msa0253240:three_prime_UTR 50.0%
CACCCATAGCTTAGCGAAGT+TGG - chr2_2:44869644-44869663 Msa0253240:intron 50.0%
ATACAACAACCACCAAGCCG+TGG + chr2_2:44870145-44870164 None:intergenic 50.0%
GCCATGTTTCGCAGTTATGC+TGG - chr2_2:44870307-44870326 Msa0253240:intron 50.0%
GCCAGCATAACTGCGAAACA+TGG + chr2_2:44870311-44870330 None:intergenic 50.0%
GTTGGGCTTACTGTGATAGC+AGG - chr2_2:44871441-44871460 Msa0253240:intron 50.0%
TACTGTGATAGCAGGAAGCC+AGG - chr2_2:44871449-44871468 Msa0253240:intron 50.0%
TACCTTGTAGTAGAACGGCC+TGG + chr2_2:44871470-44871489 None:intergenic 50.0%
!! GTTTTGAACCGGGTGCACTT+AGG + chr2_2:44871944-44871963 None:intergenic 50.0%
AGTGCACCCGGTTCAAAACA+TGG - chr2_2:44871945-44871964 Msa0253240:intron 50.0%
GTGCTTTGTGTCCATGTCCA+TGG - chr2_2:44872018-44872037 Msa0253240:intron 50.0%
CTTTGTGTCCATGTCCATGG+AGG - chr2_2:44872021-44872040 Msa0253240:intron 50.0%
!! GGTTTTGACCTCCATGGACA+TGG + chr2_2:44872032-44872051 None:intergenic 50.0%
GCGTTTGTCTCGCTCTATTC+AGG + chr2_2:44872393-44872412 None:intergenic 50.0%
GCATGCATCTGGTCCAAACA+TGG + chr2_2:44872657-44872676 None:intergenic 50.0%
ATGGAGCTCAGAGCTTTCTC+TGG + chr2_2:44872720-44872739 None:intergenic 50.0%
!! GTGGATTGGCAGCAGCTTTA+AGG - chr2_2:44873567-44873586 Msa0253240:intron 50.0%
GATTACTCACCGCTCAACCA+AGG - chr2_2:44873843-44873862 Msa0253240:CDS 50.0%
!! GTAGACTAGCCTTGGTTGAG+CGG + chr2_2:44873855-44873874 None:intergenic 50.0%
AAGGTTGCTGTGTTGGGTGG+TGG - chr2_2:44866950-44866969 Msa0253240:three_prime_UTR 55.0%
TTTGAGTCTGCTAGAGGCCC+TGG - chr2_2:44867140-44867159 Msa0253240:three_prime_UTR 55.0%
! TTTGGGACATGCGTCCACCA+GGG + chr2_2:44867160-44867179 None:intergenic 55.0%
GTGGACGCATGTCCCAAAGA+AGG - chr2_2:44867162-44867181 Msa0253240:three_prime_UTR 55.0%
GTTAATCCCTCCAGCCAGGT+AGG + chr2_2:44867406-44867425 None:intergenic 55.0%
AGAGGTTAATCCCTCCAGCC+AGG + chr2_2:44867410-44867429 None:intergenic 55.0%
AATTGCGCGCAGAGGATACC+TGG - chr2_2:44867432-44867451 Msa0253240:three_prime_UTR 55.0%
CTGATCATGGGACCCTAGGA+AGG - chr2_2:44867639-44867658 Msa0253240:intron 55.0%
! CCGAGAAAAACGGAGCACCA+TGG + chr2_2:44868040-44868059 None:intergenic 55.0%
CTCGGTTAGCAAGCCTGAAG+TGG - chr2_2:44868055-44868074 Msa0253240:intron 55.0%
GATCGATACCAACCACGGCT+TGG - chr2_2:44870130-44870149 Msa0253240:intron 55.0%
AACAACCACCAAGCCGTGGT+TGG + chr2_2:44870141-44870160 None:intergenic 55.0%
! GTCAATAGGTTGGCTGGGAG+AGG - chr2_2:44870858-44870877 Msa0253240:intron 55.0%
AGCCAGGCCGTTCTACTACA+AGG - chr2_2:44871465-44871484 Msa0253240:intron 55.0%
TCTTGGGCAATGCTAGCAGC+TGG + chr2_2:44873461-44873480 None:intergenic 55.0%
AGCTGCTAGCATTGCCCAAG+AGG - chr2_2:44873460-44873479 Msa0253240:intron 55.0%
!! CTTTGGGACATGCGTCCACC+AGG + chr2_2:44867161-44867180 None:intergenic 60.0%
CAGGTAGGACCGCAATGGCT+AGG + chr2_2:44867391-44867410 None:intergenic 60.0%
CTAGCCATTGCGGTCCTACC+TGG - chr2_2:44867389-44867408 Msa0253240:three_prime_UTR 60.0%
ACCTCTGCAATTGCGCGCAG+AGG - chr2_2:44867424-44867443 Msa0253240:three_prime_UTR 60.0%
TCCTCTGCGCGCAATTGCAG+AGG + chr2_2:44867428-44867447 None:intergenic 60.0%
CGAGGGGTCTCGTAGCTGAA+TGG - chr2_2:44868102-44868121 Msa0253240:intron 60.0%
ACAGGACGGTTGCCACCACT+TGG - chr2_2:44869333-44869352 Msa0253240:three_prime_UTR 60.0%
! CGATACCAACCACGGCTTGG+TGG - chr2_2:44870133-44870152 Msa0253240:intron 60.0%
GAGTCTGCTAGAGGCCCTGG+TGG - chr2_2:44867143-44867162 Msa0253240:three_prime_UTR 65.0%
CCAGCCAGGTAGGACCGCAA+TGG + chr2_2:44867396-44867415 None:intergenic 65.0%
CCATTGCGGTCCTACCTGGC+TGG - chr2_2:44867393-44867412 Msa0253240:three_prime_UTR 65.0%
TTGCGGTCCTACCTGGCTGG+AGG - chr2_2:44867396-44867415 Msa0253240:three_prime_UTR 65.0%
TGCGGTCCTACCTGGCTGGA+GGG - chr2_2:44867397-44867416 Msa0253240:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 44866810 44874146 44866810 ID=Msa0253240;Name=Msa0253240
chr2_2 mRNA 44866810 44874146 44866810 ID=Msa0253240-mRNA-1;Parent=Msa0253240;Name=Msa0253240-mRNA-1;_AED=0.11;_eAED=0.11;_QI=89|0.77|0.8|1|0.77|0.7|10|1255|122
chr2_2 exon 44866810 44867511 44866810 ID=Msa0253240-mRNA-1:exon:13813;Parent=Msa0253240-mRNA-1
chr2_2 exon 44869205 44869378 44869205 ID=Msa0253240-mRNA-1:exon:13812;Parent=Msa0253240-mRNA-1
chr2_2 exon 44869470 44869618 44869470 ID=Msa0253240-mRNA-1:exon:13811;Parent=Msa0253240-mRNA-1
chr2_2 exon 44870604 44870701 44870604 ID=Msa0253240-mRNA-1:exon:13810;Parent=Msa0253240-mRNA-1
chr2_2 exon 44871602 44871655 44871602 ID=Msa0253240-mRNA-1:exon:13809;Parent=Msa0253240-mRNA-1
chr2_2 exon 44871756 44871881 44871756 ID=Msa0253240-mRNA-1:exon:13808;Parent=Msa0253240-mRNA-1
chr2_2 exon 44871921 44871928 44871921 ID=Msa0253240-mRNA-1:exon:13807;Parent=Msa0253240-mRNA-1
chr2_2 exon 44872819 44872955 44872819 ID=Msa0253240-mRNA-1:exon:13806;Parent=Msa0253240-mRNA-1
chr2_2 exon 44873773 44873872 44873773 ID=Msa0253240-mRNA-1:exon:13805;Parent=Msa0253240-mRNA-1
chr2_2 exon 44873982 44874146 44873982 ID=Msa0253240-mRNA-1:exon:13804;Parent=Msa0253240-mRNA-1
chr2_2 five_prime_UTR 44874058 44874146 44874058 ID=Msa0253240-mRNA-1:five_prime_utr;Parent=Msa0253240-mRNA-1
chr2_2 CDS 44873982 44874057 44873982 ID=Msa0253240-mRNA-1:cds;Parent=Msa0253240-mRNA-1
chr2_2 CDS 44873773 44873872 44873773 ID=Msa0253240-mRNA-1:cds;Parent=Msa0253240-mRNA-1
chr2_2 CDS 44872819 44872955 44872819 ID=Msa0253240-mRNA-1:cds;Parent=Msa0253240-mRNA-1
chr2_2 CDS 44871921 44871928 44871921 ID=Msa0253240-mRNA-1:cds;Parent=Msa0253240-mRNA-1
chr2_2 CDS 44871834 44871881 44871834 ID=Msa0253240-mRNA-1:cds;Parent=Msa0253240-mRNA-1
chr2_2 three_prime_UTR 44871756 44871833 44871756 ID=Msa0253240-mRNA-1:three_prime_utr;Parent=Msa0253240-mRNA-1
chr2_2 three_prime_UTR 44871602 44871655 44871602 ID=Msa0253240-mRNA-1:three_prime_utr;Parent=Msa0253240-mRNA-1
chr2_2 three_prime_UTR 44870604 44870701 44870604 ID=Msa0253240-mRNA-1:three_prime_utr;Parent=Msa0253240-mRNA-1
chr2_2 three_prime_UTR 44869470 44869618 44869470 ID=Msa0253240-mRNA-1:three_prime_utr;Parent=Msa0253240-mRNA-1
chr2_2 three_prime_UTR 44869205 44869378 44869205 ID=Msa0253240-mRNA-1:three_prime_utr;Parent=Msa0253240-mRNA-1
chr2_2 three_prime_UTR 44866810 44867511 44866810 ID=Msa0253240-mRNA-1:three_prime_utr;Parent=Msa0253240-mRNA-1
Gene Sequence

>Msa0253240

ATGTCTGTTTCAGAATCCAACAGCCAAAAAACAATGACTTCCACTGTCTTTAAGGTTGCTGTGTTGGGTGGTGGAATTTCAGGAGCAGTGTGTGCATCAACTCTTGCTAGAAATGGTGTTTCTGTTACACTCTTTGAGTCTGCTAGAGGCCCTGGTGGACGCATGTCCCAAAGAAGAGAGAAAACTGAAGATGGGAAGGAGCTGCATTTTGACCATGGTGCTCCGTTTTTCTCGGTTAGCAAGCCTGAAGTGGCTCGTCTAGTTCAAGAATGGGAGTCGAGGGGTCTCGTAGCTGAATGGAGAGAAAAGTTTGAGTTGACCGTGTGGAAAGCAAGTTTGGTGTGGGTATTGGAAGAGTTGAATGGTTGA

Protein sequence

>Msa0253240

MSVSESNSQKTMTSTVFKVAVLGGGISGAVCASTLARNGVSVTLFESARGPGGRMSQRREKTEDGKELHFDHGAPFFSVSKPEVARLVQEWESRGLVAEWREKFELTVWKASLVWVLEELNG*