AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0098990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098990 MtrunA17_Chr1g0151421 94.915 354 0 1 41 376 3 356 0.0 677
Msa0098990 MtrunA17_Chr1g0153571 94.618 353 2 1 41 376 3 355 0.0 672
Msa0098990 MtrunA17_Chr1g0184451 34.564 298 143 10 75 364 17 270 1.12e-41 147
Msa0098990 MtrunA17_Chr6g0485031 40.000 180 103 3 76 255 173 347 5.73e-31 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098990 AT5G50960.1 74.000 350 71 3 41 372 3 350 0.0 528
Msa0098990 AT4G19540.1 43.005 193 100 5 75 264 38 223 7.37e-38 139
Msa0098990 AT3G24430.1 39.444 180 104 3 76 255 172 346 4.49e-31 124

Find 99 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGATTAAATTCAGCATTTC+AGG 0.187756 1_3:+5032579 None:intergenic
CCTTCTAGGCCAAGCATCTT+TGG 0.224706 1_3:+5033080 None:intergenic
TACATAAGGTTATTATTATA+AGG 0.233405 1_3:-5031990 Msa0098990:three_prime_UTR
GGTGTATCTCTTGACCTTCT+AGG 0.281189 1_3:+5033066 None:intergenic
ATAATTCTTTCAAACACTTC+TGG 0.300011 1_3:+5032035 None:intergenic
ATCCAGACGAAGCTGTTATA+TGG 0.325193 1_3:-5032968 Msa0098990:CDS
TTTATGAAGATTACAGATAA+TGG 0.328286 1_3:-5032654 Msa0098990:CDS
GAGATGGCGGTACCCTTTCT+TGG 0.328779 1_3:-5032504 Msa0098990:CDS
AATCTCGGGGTCATGTCAAT+TGG 0.348522 1_3:-5033005 Msa0098990:CDS
CTTCTAGGCCAAGCATCTTT+GGG 0.359162 1_3:+5033081 None:intergenic
CATACGTTCGTTGGCATCCT+CGG 0.362541 1_3:+5036629 None:intergenic
AAAGTTGGAGTGAAAGTTCT+TGG 0.364693 1_3:-5032726 Msa0098990:CDS
TTGAAAGCTATTTATACATA+AGG 0.368274 1_3:-5032004 Msa0098990:three_prime_UTR
TTTCACAGTGGCCATTCTTT+CGG 0.375809 1_3:+5033235 None:intergenic
CTAATTGTTGATGCTCCGCC+TGG 0.377996 1_3:-5032876 Msa0098990:CDS
CAGCTAACGCAAATGCCAGC+TGG 0.379548 1_3:+5033156 None:intergenic
CCAAAGATGCTTGGCCTAGA+AGG 0.402010 1_3:-5033080 Msa0098990:CDS
CCAAGCATCTTTGGGATGCT+TGG 0.406720 1_3:+5033089 None:intergenic
CTACAATGTCACAAACAAAC+TGG 0.407779 1_3:+5032124 None:intergenic
GTCTATGTTGAGTCTAATCT+CGG 0.416769 1_3:-5033020 Msa0098990:CDS
CACTGTGAAACATAAGATAC+TGG 0.420840 1_3:-5033222 Msa0098990:CDS
AAGTTGGAGTGAAAGTTCTT+GGG 0.429446 1_3:-5032725 Msa0098990:CDS
GGCGGTACCCTTTCTTGGTA+AGG 0.430728 1_3:-5032499 Msa0098990:CDS
CATAAGATACTGGTCTTGTC+AGG 0.432544 1_3:-5033212 Msa0098990:CDS
TAAAGGAACCTTACCAAGAA+AGG 0.434925 1_3:+5032491 None:intergenic
AGATGTTACGGAGTGGATAT+CGG 0.437420 1_3:-5032622 Msa0098990:CDS
ACTTGAGATTTGAGATGGGC+TGG 0.443213 1_3:+5032676 None:intergenic
AGCTAACGCAAATGCCAGCT+GGG 0.447107 1_3:+5033157 None:intergenic
GCAGAATCAGACTGAGGACC+TGG 0.452269 1_3:+5036500 None:intergenic
CTCCATATAACAGCTTCGTC+TGG 0.454307 1_3:+5032966 None:intergenic
CATAAACTTGAGATTTGAGA+TGG 0.455458 1_3:+5032671 None:intergenic
ATACGTTCGTTGGCATCCTC+GGG 0.457202 1_3:+5036630 None:intergenic
CGTCTACATTAGCAGCATCT+AGG 0.458881 1_3:+5032820 None:intergenic
CTTCTGGACATTGATATTTG+TGG 0.463857 1_3:-5033113 Msa0098990:CDS
AGAGAAGAGAAGAGCTTCCA+TGG 0.467899 1_3:-5036670 Msa0098990:CDS
ATCTCGGGGTCATGTCAATT+GGG 0.470649 1_3:-5033004 Msa0098990:CDS
CTTTGCAAGGCAGCCGAAGA+AGG 0.473054 1_3:-5032459 Msa0098990:CDS
TGGTGAGATGAAAGATGTTA+CGG 0.483466 1_3:-5032634 Msa0098990:CDS
GGTCCTCAGTCTGATTCTGC+TGG 0.484126 1_3:-5036497 Msa0098990:CDS
ATGTGTTCATCTGAGGTTCC+AGG 0.485714 1_3:+5032858 None:intergenic
GGCATTTGCGTTAGCTGCAA+GGG 0.486589 1_3:-5033150 Msa0098990:CDS
GAGACCAACCAAGGTTGCTC+TGG 0.487893 1_3:+5033045 None:intergenic
ACAATCTTTATCTGCAAAGC+AGG 0.488362 1_3:+5032431 None:intergenic
AAAGCAGGATCTGCCTTCTT+CGG 0.495633 1_3:+5032446 None:intergenic
GATTTGAGATGGGCTGGGAC+AGG 0.504393 1_3:+5032682 None:intergenic
TTGCAAAGCTGTGGATCTAA+AGG 0.505094 1_3:+5032474 None:intergenic
AAATATATTCATACGTTCGT+TGG 0.505708 1_3:+5036620 None:intergenic
GGTTGCCATTGCCGAAAGAA+TGG 0.507040 1_3:-5033246 Msa0098990:CDS
TATATCTCCGTTGTTCTCCA+TGG 0.511044 1_3:+5036653 None:intergenic
ATACTGGTCTTGTCAGGAAA+GGG 0.511385 1_3:-5033206 Msa0098990:CDS
CTTGAGATTTGAGATGGGCT+GGG 0.511450 1_3:+5032677 None:intergenic
GTATTTGATAGTAGCGGTGG+TGG 0.514266 1_3:-5032546 Msa0098990:CDS
AGTCATCGTCGTCACCCGCC+AGG 0.519376 1_3:-5036948 Msa0098990:intron
AAAGGAACCTTACCAAGAAA+GGG 0.525559 1_3:+5032492 None:intergenic
TGGCATTTGCGTTAGCTGCA+AGG 0.531152 1_3:-5033151 Msa0098990:CDS
CCAAGCATCCCAAAGATGCT+TGG 0.531277 1_3:-5033089 Msa0098990:CDS
TCTATGTTGAGTCTAATCTC+GGG 0.532182 1_3:-5033019 Msa0098990:CDS
GATAAGCTGATGGAAACTAG+TGG 0.534659 1_3:-5032375 Msa0098990:CDS
GAGATACACCAGAGCAACCT+TGG 0.541471 1_3:-5033053 Msa0098990:CDS
CTGGCATTTACAGATTGCCC+AGG 0.541633 1_3:-5036518 Msa0098990:intron
GATACTGGTCTTGTCAGGAA+AGG 0.542244 1_3:-5033207 Msa0098990:CDS
AGTGGCCATTCTTTCGGCAA+TGG 0.546079 1_3:+5033241 None:intergenic
TTGTCAGGAAAGGGAGGTGT+TGG 0.547516 1_3:-5033197 Msa0098990:CDS
TCGGCTGCCTTGCAAAGCTG+TGG 0.547932 1_3:+5032465 None:intergenic
TACACCAGAGCAACCTTGGT+TGG 0.551299 1_3:-5033049 Msa0098990:CDS
AGTTGGAGTGAAAGTTCTTG+GGG 0.553652 1_3:-5032724 Msa0098990:CDS
ATAACAGCTTCGTCTGGATG+AGG 0.554608 1_3:+5032972 None:intergenic
AGATTAGACTCAACATAGAC+AGG 0.558926 1_3:+5033023 None:intergenic
AATTGAAATGTGTTCATCTG+AGG 0.559191 1_3:+5032851 None:intergenic
ATAAACTTGAGATTTGAGAT+GGG 0.559421 1_3:+5032672 None:intergenic
AAAGATAATAGATAAGCTGA+TGG 0.562227 1_3:-5032385 Msa0098990:CDS
AACTAGTGGGCTGTCAATGA+CGG 0.568788 1_3:-5032361 Msa0098990:CDS
ACTATCAAATACTTCACTGC+AGG 0.571986 1_3:+5032557 None:intergenic
CTGTCAATGACGGAAAGCAA+TGG 0.575375 1_3:-5032351 Msa0098990:CDS
GACGAAGCTGTTATATGGAG+AGG 0.584494 1_3:-5032963 Msa0098990:CDS
TATCAGAAACAAACACCTGC+CGG 0.594674 1_3:-5036971 Msa0098990:CDS
ATAAGCTGATGGAAACTAGT+GGG 0.602164 1_3:-5032374 Msa0098990:CDS
TTTAGATCCACAGCTTTGCA+AGG 0.603851 1_3:-5032472 Msa0098990:CDS
GTTGAAGATGTGTAACGAGA+TGG 0.614173 1_3:-5032520 Msa0098990:CDS
CAGAATCAGACTGAGGACCT+GGG 0.614924 1_3:+5036501 None:intergenic
GCGGGTGACGACGATGACTC+CGG 0.617264 1_3:+5036952 None:intergenic
AAGAGAGACTTGTTGAGGAG+TGG 0.628280 1_3:+5032782 None:intergenic
GTGACGACGATGACTCCGGC+AGG 0.628500 1_3:+5036956 None:intergenic
AGATGAAAGATGTTACGGAG+TGG 0.628653 1_3:-5032629 Msa0098990:CDS
CTAGATGCTGCTAATGTAGA+CGG 0.629983 1_3:-5032819 Msa0098990:CDS
CTGGTCTTGTCAGGAAAGGG+AGG 0.640582 1_3:-5033203 Msa0098990:CDS
GAAGTATTTGATAGTAGCGG+TGG 0.649921 1_3:-5032549 Msa0098990:CDS
TCAATAAGAGAGACTTGTTG+AGG 0.650660 1_3:+5032777 None:intergenic
CTATGTTGAGTCTAATCTCG+GGG 0.653466 1_3:-5033018 Msa0098990:CDS
AGTGAAGTATTTGATAGTAG+CGG 0.680092 1_3:-5032552 Msa0098990:CDS
AGAGCTTCCATGGAGAACAA+CGG 0.682274 1_3:-5036660 Msa0098990:CDS
GGAAAATCTGATGCATGTGA+AGG 0.682695 1_3:-5036476 Msa0098990:intron
GGGGTTGTAGAGAATATGAG+TGG 0.686460 1_3:-5032705 Msa0098990:CDS
TTTCCAGCAGAATCAGACTG+AGG 0.699719 1_3:+5036494 None:intergenic
CATAGACAGGAGACCAACCA+AGG 0.702138 1_3:+5033036 None:intergenic
GAAGATGTGTAACGAGATGG+CGG 0.710160 1_3:-5032517 Msa0098990:CDS
GAACAACGGAGATATACCCG+AGG 0.745436 1_3:-5036646 Msa0098990:CDS
CAGTATCTTATGTTTCACAG+TGG 0.751734 1_3:+5033223 None:intergenic
TGTTCATCTGAGGTTCCAGG+CGG 0.754863 1_3:+5032861 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATCAATTATTTTAACAAA+CGG + chr1_3:5032274-5032293 None:intergenic 10.0%
!!! ATATTTTTCTTAACATAAAT+TGG - chr1_3:5035561-5035580 Msa0098990:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_3:5034571-5034590 Msa0098990:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_3:5034571-5034590 Msa0098990:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_3:5034571-5034590 Msa0098990:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_3:5034571-5034590 Msa0098990:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_3:5034571-5034590 Msa0098990:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_3:5034571-5034590 Msa0098990:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_3:5034571-5034590 Msa0098990:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_3:5034571-5034590 Msa0098990:intron 100.0%
!!! AACCATTTTTATCTATTTAA+AGG - chr1_3:5034930-5034949 Msa0098990:intron 15.0%
!! ATCCTTTAAATAGATAAAAA+TGG + chr1_3:5034935-5034954 None:intergenic 15.0%
!!! TTTTTATCTATTTAAAGGAT+TGG - chr1_3:5034935-5034954 Msa0098990:intron 15.0%
!! TTAGAAATATTTCGATAATT+TGG - chr1_3:5035002-5035021 Msa0098990:intron 15.0%
!!! ATGTAAAATTAAGTTTTATG+CGG - chr1_3:5036763-5036782 Msa0098990:intron 15.0%
!! AAAGTAAGAAATATAGAAGA+GGG + chr1_3:5032136-5032155 None:intergenic 20.0%
!! CTATATTTCTTACTTTCAAT+TGG - chr1_3:5032140-5032159 Msa0098990:three_prime_UTR 20.0%
!! GAACAAGCTTATATAAATAA+GGG + chr1_3:5032924-5032943 None:intergenic 20.0%
!! TGAACAAGCTTATATAAATA+AGG + chr1_3:5032925-5032944 None:intergenic 20.0%
!! ATCATTATCATTGCTTATTT+GGG - chr1_3:5033047-5033066 Msa0098990:CDS 20.0%
!!! AGTATTTTATTATAGCCAAA+TGG + chr1_3:5033781-5033800 None:intergenic 20.0%
!! TATAGAAATAGATCAAACAA+TGG + chr1_3:5034195-5034214 None:intergenic 20.0%
!! ATAGAATATTTAAAGAGCAA+AGG + chr1_3:5034339-5034358 None:intergenic 20.0%
!!! GCTCTTTAAATATTCTATTT+TGG - chr1_3:5034341-5034360 Msa0098990:intron 20.0%
!!! CTGAAATTTAATTTAGTTCA+TGG + chr1_3:5034489-5034508 None:intergenic 20.0%
!!! AGTGAAATGTTTATTTTAGA+AGG + chr1_3:5035349-5035368 None:intergenic 20.0%
!! ATCATTCTTCAAACTATTAT+TGG + chr1_3:5035439-5035458 None:intergenic 20.0%
!! CCAAAGAGAATATTTATAAT+CGG + chr1_3:5035496-5035515 None:intergenic 20.0%
!!! CATTTTCATTTTTTTTGCAT+TGG - chr1_3:5035720-5035739 Msa0098990:intron 20.0%
!!! AGTTTTTAAAAGACGTTTAT+TGG - chr1_3:5036088-5036107 Msa0098990:intron 20.0%
!!! GTTTTTAAAAGACGTTTATT+GGG - chr1_3:5036089-5036108 Msa0098990:intron 20.0%
!!! TTTTTAAAAGACGTTTATTG+GGG - chr1_3:5036090-5036109 Msa0098990:intron 20.0%
!! TTTATGAAGATTACAGATAA+TGG - chr1_3:5036348-5036367 Msa0098990:intron 20.0%
!!! GCATAAAACTTAATTTTACA+TGG + chr1_3:5036764-5036783 None:intergenic 20.0%
!! TTGAAAGCTATTTATACATA+AGG - chr1_3:5036998-5037017 Msa0098990:CDS 20.0%
! GAAAGTAAGAAATATAGAAG+AGG + chr1_3:5032137-5032156 None:intergenic 25.0%
!! ATGTGGTTTCTAATTTTGAA+TGG - chr1_3:5032174-5032193 Msa0098990:three_prime_UTR 25.0%
!!! GATTCTAAAATCATACTCTT+TGG - chr1_3:5032214-5032233 Msa0098990:three_prime_UTR 25.0%
! AAATATATTCATACGTTCGT+TGG + chr1_3:5032385-5032404 None:intergenic 25.0%
!! AACATAAAAGCATAAGAGAA+AGG + chr1_3:5032616-5032635 None:intergenic 25.0%
! CACTTAATCATTTATCATGT+AGG - chr1_3:5032673-5032692 Msa0098990:CDS 25.0%
! AATCCTAGAACTTAAAAGAA+TGG + chr1_3:5032952-5032971 None:intergenic 25.0%
!!! TTCTTTTAAGTTCTAGGATT+TGG - chr1_3:5032952-5032971 Msa0098990:CDS 25.0%
!!! TCTTTTAAGTTCTAGGATTT+GGG - chr1_3:5032953-5032972 Msa0098990:CDS 25.0%
! CATCATTATCATTGCTTATT+TGG - chr1_3:5033046-5033065 Msa0098990:CDS 25.0%
!! ATAAAATGTTTCACTAGTCT+TGG + chr1_3:5033145-5033164 None:intergenic 25.0%
!!! TGCTTAGTTTGTTTATTGTT+TGG - chr1_3:5033177-5033196 Msa0098990:CDS 25.0%
!!! TTATTGTTTGGTCTTGTTAT+AGG - chr1_3:5033189-5033208 Msa0098990:CDS 25.0%
!!! TATTGTTTGGTCTTGTTATA+GGG - chr1_3:5033190-5033209 Msa0098990:CDS 25.0%
! ATTTGTTCAATTTGTGAAGT+TGG - chr1_3:5033261-5033280 Msa0098990:intron 25.0%
! CTAGTCATGAATTATTAAGT+TGG + chr1_3:5033336-5033355 None:intergenic 25.0%
! GAAACAAAGTGACATTATAT+AGG - chr1_3:5033439-5033458 Msa0098990:intron 25.0%
! GTATATTGTAATAAAGAGTG+TGG - chr1_3:5033931-5033950 Msa0098990:intron 25.0%
! AGGATATTAAATAAAGAGTG+TGG - chr1_3:5033956-5033975 Msa0098990:intron 25.0%
!! TATTAAATAAAGAGTGTGGT+AGG - chr1_3:5033960-5033979 Msa0098990:intron 25.0%
! AGAGTGTATTTATTTGATGA+AGG + chr1_3:5034167-5034186 None:intergenic 25.0%
! AATCAAAGATGCAATATGAT+AGG + chr1_3:5034246-5034265 None:intergenic 25.0%
! GAACATTGAAGAAGAAATTT+AGG - chr1_3:5034773-5034792 Msa0098990:intron 25.0%
! AAAATTGAATCCTTCTTGAT+TGG + chr1_3:5035050-5035069 None:intergenic 25.0%
!! ATATTTATAATCGGTTTCAG+AGG + chr1_3:5035487-5035506 None:intergenic 25.0%
! CCGATTATAAATATTCTCTT+TGG - chr1_3:5035493-5035512 Msa0098990:intron 25.0%
! AAATATGACATCAAGAAAGT+AGG + chr1_3:5035595-5035614 None:intergenic 25.0%
!!! TATTTTTTCTGTATGACACT+TGG - chr1_3:5035610-5035629 Msa0098990:intron 25.0%
!!! ATTTTTTCTGTATGACACTT+GGG - chr1_3:5035611-5035630 Msa0098990:intron 25.0%
!!! TAGGGCATTTCTTAATTTTA+TGG - chr1_3:5035645-5035664 Msa0098990:intron 25.0%
!! ATAAACTTGAGATTTGAGAT+GGG + chr1_3:5036333-5036352 None:intergenic 25.0%
! AAAGATAATAGATAAGCTGA+TGG - chr1_3:5036617-5036636 Msa0098990:intron 25.0%
!! AAACGAATTTTCTGTCAATT+AGG + chr1_3:5036729-5036748 None:intergenic 25.0%
! ATAATTCTTTCAAACACTTC+TGG + chr1_3:5036970-5036989 None:intergenic 25.0%
! CGTAAAATGAGAACTTTTGA+TGG + chr1_3:5032011-5032030 None:intergenic 30.0%
AATTGGTGTGTTTGATTATG+TGG - chr1_3:5032157-5032176 Msa0098990:three_prime_UTR 30.0%
TACACAAGAATCAAAGTCAA+TGG + chr1_3:5032451-5032470 None:intergenic 30.0%
! TGTGTATTTTGTATTGTTGC+TGG - chr1_3:5032465-5032484 Msa0098990:CDS 30.0%
!! TTGCACAAATTTGCTGATTT+GGG + chr1_3:5032555-5032574 None:intergenic 30.0%
GTTTATTTCCAATGACCATT+AGG - chr1_3:5032633-5032652 Msa0098990:CDS 30.0%
TAAGTGCGTTTAATCAAACA+GGG + chr1_3:5032659-5032678 None:intergenic 30.0%
TTAAGTGCGTTTAATCAAAC+AGG + chr1_3:5032660-5032679 None:intergenic 30.0%
!! CTTGTTTTCATAAACTCTAC+GGG + chr1_3:5032789-5032808 None:intergenic 30.0%
!!! CCTTGTTTTCATAAACTCTA+CGG + chr1_3:5032790-5032809 None:intergenic 30.0%
TGAAACAGTGTATGGATAAT+TGG - chr1_3:5032810-5032829 Msa0098990:CDS 30.0%
! AAATAAGGGTTTGTTTCGAT+TGG + chr1_3:5032910-5032929 None:intergenic 30.0%
!!! ACACCATTCTTTTAAGTTCT+AGG - chr1_3:5032946-5032965 Msa0098990:CDS 30.0%
ATTGTAGTGTGATTTCTTTC+CGG - chr1_3:5033020-5033039 Msa0098990:CDS 30.0%
AATCAGCTCTATCATAGTTA+TGG - chr1_3:5033094-5033113 Msa0098990:CDS 30.0%
TTATAGGGTTGTTAATTCCT+TGG - chr1_3:5033205-5033224 Msa0098990:CDS 30.0%
TATAGGGTTGTTAATTCCTT+GGG - chr1_3:5033206-5033225 Msa0098990:CDS 30.0%
GTTCATTTCATAGTTGTCAA+AGG + chr1_3:5033291-5033310 None:intergenic 30.0%
! TATGACACGTTTGCTAAAAT+CGG + chr1_3:5033565-5033584 None:intergenic 30.0%
TGATAAAGACTTAAGCCATT+TGG - chr1_3:5033763-5033782 Msa0098990:intron 30.0%
! TTGTAATAAAGAGTGTGGTT+AGG - chr1_3:5033936-5033955 Msa0098990:intron 30.0%
TTATGCCTCAGTTGTATAAA+TGG - chr1_3:5034003-5034022 Msa0098990:intron 30.0%
! CGATTTCTGCTTCTAAATTT+TGG - chr1_3:5034217-5034236 Msa0098990:intron 30.0%
! AAAGTATTAGATGTAGGTTG+TGG + chr1_3:5034312-5034331 None:intergenic 30.0%
GAATATTTAAAGAGCAAAGG+TGG + chr1_3:5034336-5034355 None:intergenic 30.0%
AATTATTCATTGCACAATCC+AGG - chr1_3:5034407-5034426 Msa0098990:intron 30.0%
ATTATTCATTGCACAATCCA+GGG - chr1_3:5034408-5034427 Msa0098990:intron 30.0%
ACAGGCTTATATTTCTCTAA+CGG + chr1_3:5034528-5034547 None:intergenic 30.0%
! TTTGTAATGGAGTAGTGTTA+GGG - chr1_3:5034659-5034678 Msa0098990:intron 30.0%
TGAAGAAGAAATTTAGGAAG+TGG - chr1_3:5034779-5034798 Msa0098990:intron 30.0%
! TTTGATCCCTTTGAAAATGT+CGG - chr1_3:5034827-5034846 Msa0098990:intron 30.0%
GATTGGTGAATGACATAAAA+AGG - chr1_3:5034952-5034971 Msa0098990:intron 30.0%
GAGAAATGCTAGTTGTAATT+TGG - chr1_3:5034978-5034997 Msa0098990:intron 30.0%
GTCATATGATATGTTGCATT+GGG - chr1_3:5035097-5035116 Msa0098990:intron 30.0%
TCATATGATATGTTGCATTG+GGG - chr1_3:5035098-5035117 Msa0098990:intron 30.0%
GGTTATTCAATTAGATCTGT+GGG - chr1_3:5035119-5035138 Msa0098990:intron 30.0%
! AATTGTATCAGTTTTTCCTG+TGG - chr1_3:5035168-5035187 Msa0098990:intron 30.0%
!! TGGGAGATTTTAGTCAATTT+TGG - chr1_3:5035200-5035219 Msa0098990:intron 30.0%
!!! TTTTGGTTTTTATTGCTTCC+TGG - chr1_3:5035217-5035236 Msa0098990:intron 30.0%
GCTTAACTAACTGAAAAACA+CGG + chr1_3:5035245-5035264 None:intergenic 30.0%
ACAAACAATGCTTCTAAACA+AGG + chr1_3:5035267-5035286 None:intergenic 30.0%
TGCCATTGTTTCAAAGTTAA+TGG - chr1_3:5035528-5035547 Msa0098990:intron 30.0%
!! CACCATTAACTTTGAAACAA+TGG + chr1_3:5035533-5035552 None:intergenic 30.0%
ACCAAAATGCTTAAACATGA+AGG + chr1_3:5035698-5035717 None:intergenic 30.0%
AATTGAAATGTGTTCATCTG+AGG + chr1_3:5036154-5036173 None:intergenic 30.0%
! GTGAATTTTTGCAAGAAAGT+TGG - chr1_3:5036261-5036280 Msa0098990:intron 30.0%
CATAAACTTGAGATTTGAGA+TGG + chr1_3:5036334-5036353 None:intergenic 30.0%
! AGTGAAGTATTTGATAGTAG+CGG - chr1_3:5036450-5036469 Msa0098990:intron 30.0%
! TCTATTATCTTTTGTAACGC+TGG + chr1_3:5036609-5036628 None:intergenic 30.0%
!! AATTAAGTTTTATGCGGTTG+AGG - chr1_3:5036769-5036788 Msa0098990:intron 30.0%
!! GTTGCACAAATTTGCTGATT+TGG + chr1_3:5032556-5032575 None:intergenic 35.0%
TTTAATCAAACAGGGCCTAA+TGG + chr1_3:5032651-5032670 None:intergenic 35.0%
CCGTAGAGTTTATGAAAACA+AGG - chr1_3:5032787-5032806 Msa0098990:CDS 35.0%
AAACAAGGTGAAACAGTGTA+TGG - chr1_3:5032802-5032821 Msa0098990:CDS 35.0%
TTGTAGTGTGATTTCTTTCC+GGG - chr1_3:5033021-5033040 Msa0098990:CDS 35.0%
!! TGGGTTGATTAGCAAAGAAA+TGG - chr1_3:5033066-5033085 Msa0098990:CDS 35.0%
CTATGAAATGAACCATGTGT+TGG - chr1_3:5033298-5033317 Msa0098990:intron 35.0%
ATTGAATGATGTCCAACACA+TGG + chr1_3:5033313-5033332 None:intergenic 35.0%
! TTGTTTCCCTTTTGCGTATT+AGG + chr1_3:5033426-5033445 None:intergenic 35.0%
GAGACAACACACAAAAAGAT+AGG - chr1_3:5033490-5033509 Msa0098990:intron 35.0%
AGGAAATAGAATTCCTCGTT+AGG - chr1_3:5033510-5033529 Msa0098990:intron 35.0%
AAATAGAATTCCTCGTTAGG+TGG - chr1_3:5033513-5033532 Msa0098990:intron 35.0%
TCGGTATCTTCAAAAAACAC+AGG + chr1_3:5033546-5033565 None:intergenic 35.0%
! ACTTTGAAAACACCTACTAG+AGG - chr1_3:5033644-5033663 Msa0098990:intron 35.0%
!! GCATGGAAGCATTCTATTAT+GGG + chr1_3:5033672-5033691 None:intergenic 35.0%
!! AGCATGGAAGCATTCTATTA+TGG + chr1_3:5033673-5033692 None:intergenic 35.0%
GTCTTTATCAATGAAGCTCT+TGG + chr1_3:5033753-5033772 None:intergenic 35.0%
GGAAGTGAACAAACAAACTA+TGG + chr1_3:5033808-5033827 None:intergenic 35.0%
ACTCACCATTTATACAACTG+AGG + chr1_3:5034011-5034030 None:intergenic 35.0%
AGTTGTATAAATGGTGAGTG+AGG - chr1_3:5034012-5034031 Msa0098990:intron 35.0%
AGAAGGAGAAAAATCTCTCT+CGG + chr1_3:5034092-5034111 None:intergenic 35.0%
TGATGAAGGAAAACTGTAGA+AGG + chr1_3:5034153-5034172 None:intergenic 35.0%
!! GGTGGAAAAGTATTAGATGT+AGG + chr1_3:5034318-5034337 None:intergenic 35.0%
!!! ATTTTGGCTCTAATGAACCT+AGG - chr1_3:5034357-5034376 Msa0098990:intron 35.0%
! GATAAGGAGGTTGTTTCAAT+GGG - chr1_3:5034618-5034637 Msa0098990:intron 35.0%
! GTTTGTAATGGAGTAGTGTT+AGG - chr1_3:5034658-5034677 Msa0098990:intron 35.0%
! TTGTAATGGAGTAGTGTTAG+GGG - chr1_3:5034660-5034679 Msa0098990:intron 35.0%
AAGAAATTTAGGAAGTGGAG+TGG - chr1_3:5034784-5034803 Msa0098990:intron 35.0%
AGAAATTTAGGAAGTGGAGT+GGG - chr1_3:5034785-5034804 Msa0098990:intron 35.0%
! GACATTTTCAAAGGGATCAA+AGG + chr1_3:5034828-5034847 None:intergenic 35.0%
TGTGCTTCAATATTGTGTGT+TGG - chr1_3:5034876-5034895 Msa0098990:intron 35.0%
GCAATGATTTCCAATCAAGA+AGG - chr1_3:5035037-5035056 Msa0098990:intron 35.0%
!! GTTTACCTGCATTATTTTGC+AGG - chr1_3:5035075-5035094 Msa0098990:intron 35.0%
TATGACCTGCAAAATAATGC+AGG + chr1_3:5035083-5035102 None:intergenic 35.0%
GGTCATATGATATGTTGCAT+TGG - chr1_3:5035096-5035115 Msa0098990:intron 35.0%
GGGTTATTCAATTAGATCTG+TGG - chr1_3:5035118-5035137 Msa0098990:intron 35.0%
! TTTTCCTGTGGTATTTTGTG+TGG - chr1_3:5035180-5035199 Msa0098990:intron 35.0%
! TTTCCTGTGGTATTTTGTGT+GGG - chr1_3:5035181-5035200 Msa0098990:intron 35.0%
! GTTTTCTATCATGCTTTCAC+TGG - chr1_3:5035369-5035388 Msa0098990:intron 35.0%
! GCCTTCATGTTTAAGCATTT+TGG - chr1_3:5035694-5035713 Msa0098990:intron 35.0%
!!! TGCATTGGTTTTTGCAGATA+TGG - chr1_3:5035735-5035754 Msa0098990:intron 35.0%
CAGTATCTTATGTTTCACAG+TGG + chr1_3:5035782-5035801 None:intergenic 35.0%
CACTGTGAAACATAAGATAC+TGG - chr1_3:5035780-5035799 Msa0098990:intron 35.0%
CTTCTGGACATTGATATTTG+TGG - chr1_3:5035889-5035908 Msa0098990:intron 35.0%
AGATTAGACTCAACATAGAC+AGG + chr1_3:5035982-5036001 None:intergenic 35.0%
GTCTATGTTGAGTCTAATCT+CGG - chr1_3:5035982-5036001 Msa0098990:intron 35.0%
TCTATGTTGAGTCTAATCTC+GGG - chr1_3:5035983-5036002 Msa0098990:intron 35.0%
!! TCAATAAGAGAGACTTGTTG+AGG + chr1_3:5036228-5036247 None:intergenic 35.0%
AAAGTTGGAGTGAAAGTTCT+TGG - chr1_3:5036276-5036295 Msa0098990:intron 35.0%
AAGTTGGAGTGAAAGTTCTT+GGG - chr1_3:5036277-5036296 Msa0098990:intron 35.0%
TGGTGAGATGAAAGATGTTA+CGG - chr1_3:5036368-5036387 Msa0098990:intron 35.0%
GCGATTAAATTCAGCATTTC+AGG + chr1_3:5036426-5036445 None:intergenic 35.0%
ACTATCAAATACTTCACTGC+AGG + chr1_3:5036448-5036467 None:intergenic 35.0%
AAAGGAACCTTACCAAGAAA+GGG + chr1_3:5036513-5036532 None:intergenic 35.0%
TAAAGGAACCTTACCAAGAA+AGG + chr1_3:5036514-5036533 None:intergenic 35.0%
ACAATCTTTATCTGCAAAGC+AGG + chr1_3:5036574-5036593 None:intergenic 35.0%
ATAAGCTGATGGAAACTAGT+GGG - chr1_3:5036628-5036647 Msa0098990:intron 35.0%
CTACAATGTCACAAACAAAC+TGG + chr1_3:5036881-5036900 None:intergenic 35.0%
TATCAGAAACAAACACCTGC+CGG - chr1_3:5032031-5032050 Msa0098990:three_prime_UTR 40.0%
TATATCTCCGTTGTTCTCCA+TGG + chr1_3:5032352-5032371 None:intergenic 40.0%
GGAAAATCTGATGCATGTGA+AGG - chr1_3:5032526-5032545 Msa0098990:CDS 40.0%
ATTTGTGCAACTGCTCCTAA+AGG - chr1_3:5032565-5032584 Msa0098990:CDS 40.0%
! TACGGGATAACTTGCGAAAA+CGG + chr1_3:5032772-5032791 None:intergenic 40.0%
! GTGACTTGTGAGACTGATTA+TGG + chr1_3:5032854-5032873 None:intergenic 40.0%
TATCTAGTACATGAGCACGA+AGG + chr1_3:5033001-5033020 None:intergenic 40.0%
! AGCAATGATAATGATGAGCC+CGG + chr1_3:5033042-5033061 None:intergenic 40.0%
ATTCCTTGGGCATTTGATAG+TGG - chr1_3:5033219-5033238 Msa0098990:CDS 40.0%
! TTCCTTGGGCATTTGATAGT+GGG - chr1_3:5033220-5033239 Msa0098990:CDS 40.0%
! GTGGGTATAATTTTGTGCAG+AGG - chr1_3:5033238-5033257 Msa0098990:CDS 40.0%
CATTAGGCAAGTGTGGAAAT+CGG + chr1_3:5033390-5033409 None:intergenic 40.0%
TTGCCTAATGGTGAAGTTAG+CGG - chr1_3:5033400-5033419 Msa0098990:intron 40.0%
CATGAACAACACACTAGCTA+TGG + chr1_3:5033610-5033629 None:intergenic 40.0%
! TAGCTAGTGTGTTGTTCATG+TGG - chr1_3:5033610-5033629 Msa0098990:intron 40.0%
! AGCTAGTGTGTTGTTCATGT+GGG - chr1_3:5033611-5033630 Msa0098990:intron 40.0%
AATAGAATGCTTCCATGCTC+AGG - chr1_3:5033674-5033693 Msa0098990:intron 40.0%
TTCCATGCTCAGGAAAAAGA+TGG - chr1_3:5033684-5033703 Msa0098990:intron 40.0%
! AACCATCTTTTTCCTGAGCA+TGG + chr1_3:5033689-5033708 None:intergenic 40.0%
AATGAAGCTCTTGGATACAG+AGG + chr1_3:5033744-5033763 None:intergenic 40.0%
CGAGGGCTGATAAGTAAAAA+GGG - chr1_3:5033908-5033927 Msa0098990:intron 40.0%
GAGGGCTGATAAGTAAAAAG+GGG - chr1_3:5033909-5033928 Msa0098990:intron 40.0%
TGAGGCTAGTGAAGATTGAT+GGG - chr1_3:5034030-5034049 Msa0098990:intron 40.0%
TAAGATGCTGAATCACACCT+AGG + chr1_3:5034377-5034396 None:intergenic 40.0%
ATTGCACAATCCAGGGAATT+GGG - chr1_3:5034415-5034434 Msa0098990:intron 40.0%
ATATAAGCCTGTCGCTGAAA+TGG - chr1_3:5034536-5034555 Msa0098990:intron 40.0%
! GGATAAGGAGGTTGTTTCAA+TGG - chr1_3:5034617-5034636 Msa0098990:intron 40.0%
! GAGGTTGTTTCAATGGGAAA+AGG - chr1_3:5034624-5034643 Msa0098990:intron 40.0%
GTTTCAATGGGAAAAGGAGT+TGG - chr1_3:5034630-5034649 Msa0098990:intron 40.0%
AGAGTTAGATAGGTGGAAGT+GGG - chr1_3:5034699-5034718 Msa0098990:intron 40.0%
! ATCCCTTTGAAAATGTCGGT+TGG - chr1_3:5034831-5034850 Msa0098990:intron 40.0%
! CTCCAACCGACATTTTCAAA+GGG + chr1_3:5034836-5034855 None:intergenic 40.0%
GCTTCAATATTGTGTGTTGG+AGG - chr1_3:5034879-5034898 Msa0098990:intron 40.0%
!! ATTAGATCTGTGGGTTAGCT+AGG - chr1_3:5035128-5035147 Msa0098990:intron 40.0%
!! TATGACACTTGGGCTGTTTT+TGG - chr1_3:5035621-5035640 Msa0098990:intron 40.0%
!!! ACTTGGGCTGTTTTTGGATA+GGG - chr1_3:5035627-5035646 Msa0098990:intron 40.0%
TTTCACAGTGGCCATTCTTT+CGG + chr1_3:5035770-5035789 None:intergenic 40.0%
!! CATAAGATACTGGTCTTGTC+AGG - chr1_3:5035790-5035809 Msa0098990:intron 40.0%
!! ATACTGGTCTTGTCAGGAAA+GGG - chr1_3:5035796-5035815 Msa0098990:intron 40.0%
!!! GGATTTTCAAGTTGGTCTTC+TGG - chr1_3:5035873-5035892 Msa0098990:intron 40.0%
CTATGTTGAGTCTAATCTCG+GGG - chr1_3:5035984-5036003 Msa0098990:intron 40.0%
ATCCAGACGAAGCTGTTATA+TGG - chr1_3:5036034-5036053 Msa0098990:intron 40.0%
!! TTGATAAGCCCATTTTTGCG+TGG + chr1_3:5036066-5036085 None:intergenic 40.0%
CTAGATGCTGCTAATGTAGA+CGG - chr1_3:5036183-5036202 Msa0098990:intron 40.0%
AGTTGGAGTGAAAGTTCTTG+GGG - chr1_3:5036278-5036297 Msa0098990:intron 40.0%
AGATGAAAGATGTTACGGAG+TGG - chr1_3:5036373-5036392 Msa0098990:intron 40.0%
AGATGTTACGGAGTGGATAT+CGG - chr1_3:5036380-5036399 Msa0098990:intron 40.0%
! GAAGTATTTGATAGTAGCGG+TGG - chr1_3:5036453-5036472 Msa0098990:intron 40.0%
TTGCAAAGCTGTGGATCTAA+AGG + chr1_3:5036531-5036550 None:intergenic 40.0%
TTTAGATCCACAGCTTTGCA+AGG - chr1_3:5036530-5036549 Msa0098990:intron 40.0%
GATAAGCTGATGGAAACTAG+TGG - chr1_3:5036627-5036646 Msa0098990:intron 40.0%
GAAGGGAAAAGGGAAAAACC+TGG + chr1_3:5032075-5032094 None:intergenic 45.0%
AGAGAAGAGAAGAGCTTCCA+TGG - chr1_3:5032332-5032351 Msa0098990:exon 45.0%
AGAGCTTCCATGGAGAACAA+CGG - chr1_3:5032342-5032361 Msa0098990:exon 45.0%
TTTCCAGCAGAATCAGACTG+AGG + chr1_3:5032511-5032530 None:intergenic 45.0%
!! AAGGTGAAGAGTACCAACCA+GGG + chr1_3:5032597-5032616 None:intergenic 45.0%
!! AAAGGTGAAGAGTACCAACC+AGG + chr1_3:5032598-5032617 None:intergenic 45.0%
AAACAGGGCCTAATGGTCAT+TGG + chr1_3:5032644-5032663 None:intergenic 45.0%
TACCCACTATCAAATGCCCA+AGG + chr1_3:5033225-5033244 None:intergenic 45.0%
CGATTTCCACACTTGCCTAA+TGG - chr1_3:5033388-5033407 Msa0098990:intron 45.0%
ACTTCACCATTAGGCAAGTG+TGG + chr1_3:5033397-5033416 None:intergenic 45.0%
TTAGCGGCCTAATACGCAAA+AGG - chr1_3:5033416-5033435 Msa0098990:intron 45.0%
TAGCGGCCTAATACGCAAAA+GGG - chr1_3:5033417-5033436 Msa0098990:intron 45.0%
! TAGTGTGTTGTTCATGTGGG+AGG - chr1_3:5033614-5033633 Msa0098990:intron 45.0%
! AGTGTGTTGTTCATGTGGGA+GGG - chr1_3:5033615-5033634 Msa0098990:intron 45.0%
CTATTATGGGAGCCTCTAGT+AGG + chr1_3:5033659-5033678 None:intergenic 45.0%
CAACAAAAGCTCTTCGATGC+AGG + chr1_3:5033719-5033738 None:intergenic 45.0%
ACTTCCCTGTGTTCCTCATT+GGG - chr1_3:5033822-5033841 Msa0098990:intron 45.0%
GCTCTCGAAACAGAGTTTGA+TGG - chr1_3:5033876-5033895 Msa0098990:intron 45.0%
TTTGATGGAGATCAGAGCGA+GGG - chr1_3:5033891-5033910 Msa0098990:intron 45.0%
GCGAGGGCTGATAAGTAAAA+AGG - chr1_3:5033907-5033926 Msa0098990:intron 45.0%
GTGAGGCTAGTGAAGATTGA+TGG - chr1_3:5034029-5034048 Msa0098990:intron 45.0%
GAGGCTAGTGAAGATTGATG+GGG - chr1_3:5034031-5034050 Msa0098990:intron 45.0%
TGATGGGGACTGAGGAATAT+TGG - chr1_3:5034046-5034065 Msa0098990:intron 45.0%
TGGAGTGAACCATCACAGTT+AGG - chr1_3:5034066-5034085 Msa0098990:intron 45.0%
! GAGATTTTTCTCCTTCTCCG+AGG - chr1_3:5034095-5034114 Msa0098990:intron 45.0%
CATTGCACAATCCAGGGAAT+TGG - chr1_3:5034414-5034433 Msa0098990:intron 45.0%
CTGTCGCTGAAATGGTTGTA+GGG - chr1_3:5034544-5034563 Msa0098990:intron 45.0%
TGTCGCTGAAATGGTTGTAG+GGG - chr1_3:5034545-5034564 Msa0098990:intron 45.0%
TCAATGGGAAAAGGAGTTGG+TGG - chr1_3:5034633-5034652 Msa0098990:intron 45.0%
!! GAGTTGGTGGTGGTTTGTAA+TGG - chr1_3:5034646-5034665 Msa0098990:intron 45.0%
!! AGTGTTAGGGGTTGATTCGA+TGG - chr1_3:5034672-5034691 Msa0098990:intron 45.0%
CGATGGAGAGAGAGTTAGAT+AGG - chr1_3:5034689-5034708 Msa0098990:intron 45.0%
TGGAGAGAGAGTTAGATAGG+TGG - chr1_3:5034692-5034711 Msa0098990:intron 45.0%
GAGAGTTAGATAGGTGGAAG+TGG - chr1_3:5034698-5034717 Msa0098990:intron 45.0%
TTAGATAGGTGGAAGTGGGA+AGG - chr1_3:5034703-5034722 Msa0098990:intron 45.0%
! CCTCCAACCGACATTTTCAA+AGG + chr1_3:5034837-5034856 None:intergenic 45.0%
! CCTTTGAAAATGTCGGTTGG+AGG - chr1_3:5034834-5034853 Msa0098990:intron 45.0%
ATATTGTGTGTTGGAGGCTG+TGG - chr1_3:5034885-5034904 Msa0098990:intron 45.0%
TGTGGTAAACTCGAAGAAGG+AGG - chr1_3:5034903-5034922 Msa0098990:intron 45.0%
! GGTTAGCTAGGAAGTTGTGT+TGG - chr1_3:5035140-5035159 Msa0098990:intron 45.0%
TCTCCCACACAAAATACCAC+AGG + chr1_3:5035187-5035206 None:intergenic 45.0%
ATGCTTTCACTGGACATTGC+AGG - chr1_3:5035379-5035398 Msa0098990:intron 45.0%
!!! CACTTGGGCTGTTTTTGGAT+AGG - chr1_3:5035626-5035645 Msa0098990:intron 45.0%
!! GATACTGGTCTTGTCAGGAA+AGG - chr1_3:5035795-5035814 Msa0098990:intron 45.0%
!!! GCTGCAAGGGATTTTCAAGT+TGG - chr1_3:5035865-5035884 Msa0098990:intron 45.0%
CTTCTAGGCCAAGCATCTTT+GGG + chr1_3:5035924-5035943 None:intergenic 45.0%
GGTGTATCTCTTGACCTTCT+AGG + chr1_3:5035939-5035958 None:intergenic 45.0%
AATCTCGGGGTCATGTCAAT+TGG - chr1_3:5035997-5036016 Msa0098990:intron 45.0%
ATCTCGGGGTCATGTCAATT+GGG - chr1_3:5035998-5036017 Msa0098990:intron 45.0%
ATAACAGCTTCGTCTGGATG+AGG + chr1_3:5036033-5036052 None:intergenic 45.0%
CTCCATATAACAGCTTCGTC+TGG + chr1_3:5036039-5036058 None:intergenic 45.0%
GACGAAGCTGTTATATGGAG+AGG - chr1_3:5036039-5036058 Msa0098990:intron 45.0%
! ATGTGTTCATCTGAGGTTCC+AGG + chr1_3:5036147-5036166 None:intergenic 45.0%
CGTCTACATTAGCAGCATCT+AGG + chr1_3:5036185-5036204 None:intergenic 45.0%
!! AAGAGAGACTTGTTGAGGAG+TGG + chr1_3:5036223-5036242 None:intergenic 45.0%
GGGGTTGTAGAGAATATGAG+TGG - chr1_3:5036297-5036316 Msa0098990:intron 45.0%
! CTTGAGATTTGAGATGGGCT+GGG + chr1_3:5036328-5036347 None:intergenic 45.0%
! ACTTGAGATTTGAGATGGGC+TGG + chr1_3:5036329-5036348 None:intergenic 45.0%
! GTATTTGATAGTAGCGGTGG+TGG - chr1_3:5036456-5036475 Msa0098990:intron 45.0%
AAAGCAGGATCTGCCTTCTT+CGG + chr1_3:5036559-5036578 None:intergenic 45.0%
!! AACTAGTGGGCTGTCAATGA+CGG - chr1_3:5036641-5036660 Msa0098990:CDS 45.0%
! CTGTCAATGACGGAAAGCAA+TGG - chr1_3:5036651-5036670 Msa0098990:CDS 45.0%
!! AAAGAAAAAAATAATAAAAA+AGG + chr1_3:5032300-5032319 None:intergenic 5.0%
GGAAAAGGGAAAAACCTGGC+GGG + chr1_3:5032071-5032090 None:intergenic 50.0%
GGGAAAAGGGAAAAACCTGG+CGG + chr1_3:5032072-5032091 None:intergenic 50.0%
GAACAACGGAGATATACCCG+AGG - chr1_3:5032356-5032375 Msa0098990:CDS 50.0%
ATACGTTCGTTGGCATCCTC+GGG + chr1_3:5032375-5032394 None:intergenic 50.0%
CATACGTTCGTTGGCATCCT+CGG + chr1_3:5032376-5032395 None:intergenic 50.0%
CTGGCATTTACAGATTGCCC+AGG - chr1_3:5032484-5032503 Msa0098990:CDS 50.0%
CAGAATCAGACTGAGGACCT+GGG + chr1_3:5032504-5032523 None:intergenic 50.0%
AGGCCGCTAACTTCACCATT+AGG + chr1_3:5033406-5033425 None:intergenic 50.0%
AGGATGTCTACCACCTAACG+AGG + chr1_3:5033526-5033545 None:intergenic 50.0%
TTGTTCATGTGGGAGGGTGA+TGG - chr1_3:5033621-5033640 Msa0098990:intron 50.0%
CACTTCCCTGTGTTCCTCAT+TGG - chr1_3:5033821-5033840 Msa0098990:intron 50.0%
CCTTCCCAATGAGGAACACA+GGG + chr1_3:5033829-5033848 None:intergenic 50.0%
CCTGTGTTCCTCATTGGGAA+GGG - chr1_3:5033827-5033846 Msa0098990:intron 50.0%
GTCAACATCCCTTCCCAATG+AGG + chr1_3:5033838-5033857 None:intergenic 50.0%
TGACCTTGAGCATCTGCTAC+AGG - chr1_3:5033854-5033873 Msa0098990:intron 50.0%
GTTTGATGGAGATCAGAGCG+AGG - chr1_3:5033890-5033909 Msa0098990:intron 50.0%
AGTGTGGTAGGCTGCTTAGT+TGG - chr1_3:5033972-5033991 Msa0098990:intron 50.0%
GTGAAGATTGATGGGGACTG+AGG - chr1_3:5034038-5034057 Msa0098990:intron 50.0%
!! AGCTTGGCTCTGGTGTAGAT+TGG - chr1_3:5034118-5034137 Msa0098990:intron 50.0%
!! GCTTGGCTCTGGTGTAGATT+GGG - chr1_3:5034119-5034138 Msa0098990:intron 50.0%
CTGTGTATCTCCCAATTCCC+TGG + chr1_3:5034428-5034447 None:intergenic 50.0%
CCTACAACCATTTCAGCGAC+AGG + chr1_3:5034546-5034565 None:intergenic 50.0%
CCTGTCGCTGAAATGGTTGT+AGG - chr1_3:5034543-5034562 Msa0098990:intron 50.0%
GTCGCTGAAATGGTTGTAGG+GGG - chr1_3:5034546-5034565 Msa0098990:intron 50.0%
TCGCTGAAATGGTTGTAGGG+GGG - chr1_3:5034547-5034566 Msa0098990:intron 50.0%
TGAAATGGTTGTAGGGGGGT+GGG - chr1_3:5034551-5034570 Msa0098990:intron 50.0%
!! ATGGGAAAAGGAGTTGGTGG+TGG - chr1_3:5034636-5034655 Msa0098990:intron 50.0%
ATAGGTGGAAGTGGGAAGGA+GGG - chr1_3:5034707-5034726 Msa0098990:intron 50.0%
!! TGGAGTGGGCTAAAGAGGTT+TGG - chr1_3:5034799-5034818 Msa0098990:intron 50.0%
! ATGTCGGTTGGAGGCAAAAG+AGG - chr1_3:5034843-5034862 Msa0098990:intron 50.0%
! TGTCGGTTGGAGGCAAAAGA+GGG - chr1_3:5034844-5034863 Msa0098990:intron 50.0%
GGCTGTGGTAAACTCGAAGA+AGG - chr1_3:5034900-5034919 Msa0098990:intron 50.0%
TAACTGAAAAACACGGCGCC+AGG + chr1_3:5035238-5035257 None:intergenic 50.0%
GGTTGCCATTGCCGAAAGAA+TGG - chr1_3:5035756-5035775 Msa0098990:intron 50.0%
AGTGGCCATTCTTTCGGCAA+TGG + chr1_3:5035764-5035783 None:intergenic 50.0%
! TTGTCAGGAAAGGGAGGTGT+TGG - chr1_3:5035805-5035824 Msa0098990:intron 50.0%
AGCTAACGCAAATGCCAGCT+GGG + chr1_3:5035848-5035867 None:intergenic 50.0%
TGGCATTTGCGTTAGCTGCA+AGG - chr1_3:5035851-5035870 Msa0098990:intron 50.0%
GGCATTTGCGTTAGCTGCAA+GGG - chr1_3:5035852-5035871 Msa0098990:intron 50.0%
!! CCAAGCATCTTTGGGATGCT+TGG + chr1_3:5035916-5035935 None:intergenic 50.0%
CCAAGCATCCCAAAGATGCT+TGG - chr1_3:5035913-5035932 Msa0098990:intron 50.0%
CCTTCTAGGCCAAGCATCTT+TGG + chr1_3:5035925-5035944 None:intergenic 50.0%
CCAAAGATGCTTGGCCTAGA+AGG - chr1_3:5035922-5035941 Msa0098990:intron 50.0%
GAGATACACCAGAGCAACCT+TGG - chr1_3:5035949-5035968 Msa0098990:intron 50.0%
TACACCAGAGCAACCTTGGT+TGG - chr1_3:5035953-5035972 Msa0098990:intron 50.0%
CATAGACAGGAGACCAACCA+AGG + chr1_3:5035969-5035988 None:intergenic 50.0%
TGGAGAGGTCCACGCAAAAA+TGG - chr1_3:5036054-5036073 Msa0098990:intron 50.0%
GGAGAGGTCCACGCAAAAAT+GGG - chr1_3:5036055-5036074 Msa0098990:intron 50.0%
CTAATTGTTGATGCTCCGCC+TGG - chr1_3:5036126-5036145 Msa0098990:intron 50.0%
! TGTTCATCTGAGGTTCCAGG+CGG + chr1_3:5036144-5036163 None:intergenic 50.0%
CAAGGGAGGGGAAGGGAAAA+GGG + chr1_3:5032085-5032104 None:intergenic 55.0%
ACAAGGGAGGGGAAGGGAAA+AGG + chr1_3:5032086-5032105 None:intergenic 55.0%
TCCCTTCCCCTCCCTTGTTA+CGG - chr1_3:5032088-5032107 Msa0098990:three_prime_UTR 55.0%
GCAGAATCAGACTGAGGACC+TGG + chr1_3:5032505-5032524 None:intergenic 55.0%
GGTCCTCAGTCTGATTCTGC+TGG - chr1_3:5032505-5032524 Msa0098990:CDS 55.0%
CAACCAGGGTCAGGTCCTTT+AGG + chr1_3:5032583-5032602 None:intergenic 55.0%
CTAAAGGACCTGACCCTGGT+TGG - chr1_3:5032581-5032600 Msa0098990:CDS 55.0%
!! GAAGAGTACCAACCAGGGTC+AGG + chr1_3:5032592-5032611 None:intergenic 55.0%
CCCTGTGTTCCTCATTGGGA+AGG - chr1_3:5033826-5033845 Msa0098990:intron 55.0%
CCCTTCCCAATGAGGAACAC+AGG + chr1_3:5033830-5033849 None:intergenic 55.0%
GAGCCTGTAGCAGATGCTCA+AGG + chr1_3:5033860-5033879 None:intergenic 55.0%
TGGTAGGCTGCTTAGTTGGC+AGG - chr1_3:5033976-5033995 Msa0098990:intron 55.0%
CTCTCTCGGCCTAACTGTGA+TGG + chr1_3:5034078-5034097 None:intergenic 55.0%
TTCTCCTTCTCCGAGGAGCT+TGG - chr1_3:5034102-5034121 Msa0098990:intron 55.0%
TACACCAGAGCCAAGCTCCT+CGG + chr1_3:5034115-5034134 None:intergenic 55.0%
CTGAAATGGTTGTAGGGGGG+TGG - chr1_3:5034550-5034569 Msa0098990:intron 55.0%
GAAATGGTTGTAGGGGGGTG+GGG - chr1_3:5034552-5034571 Msa0098990:intron 55.0%
AAATGGTTGTAGGGGGGTGG+GGG - chr1_3:5034553-5034572 Msa0098990:intron 55.0%
TGGGGAGGGGGAATTGGATA+AGG - chr1_3:5034602-5034621 Msa0098990:intron 55.0%
GGAGGGGGAATTGGATAAGG+AGG - chr1_3:5034605-5034624 Msa0098990:intron 55.0%
GATAGGTGGAAGTGGGAAGG+AGG - chr1_3:5034706-5034725 Msa0098990:intron 55.0%
!! GGAAGTGGAGTGGGCTAAAG+AGG - chr1_3:5034794-5034813 Msa0098990:intron 55.0%
GTCGGTTGGAGGCAAAAGAG+GGG - chr1_3:5034845-5034864 Msa0098990:intron 55.0%
!! CTGGTCTTGTCAGGAAAGGG+AGG - chr1_3:5035799-5035818 Msa0098990:intron 55.0%
! GAGCACATTTTCTGCCCAGC+TGG - chr1_3:5035831-5035850 Msa0098990:intron 55.0%
CAGCTAACGCAAATGCCAGC+TGG + chr1_3:5035849-5035868 None:intergenic 55.0%
GAGACCAACCAAGGTTGCTC+TGG + chr1_3:5035960-5035979 None:intergenic 55.0%
!! GATTTGAGATGGGCTGGGAC+AGG + chr1_3:5036323-5036342 None:intergenic 55.0%
! GAGATGGCGGTACCCTTTCT+TGG - chr1_3:5036498-5036517 Msa0098990:CDS 55.0%
GGCGGTACCCTTTCTTGGTA+AGG - chr1_3:5036503-5036522 Msa0098990:CDS 55.0%
CTTTGCAAGGCAGCCGAAGA+AGG - chr1_3:5036543-5036562 Msa0098990:intron 55.0%
GCCGTAACAAGGGAGGGGAA+GGG + chr1_3:5032092-5032111 None:intergenic 60.0%
CTTCCCCTCCCTTGTTACGG+CGG - chr1_3:5032091-5032110 Msa0098990:three_prime_UTR 60.0%
AATCGCGGCCGCCGTAACAA+GGG + chr1_3:5032102-5032121 None:intergenic 60.0%
AAATCGCGGCCGCCGTAACA+AGG + chr1_3:5032103-5032122 None:intergenic 60.0%
GCTCCTAAAGGACCTGACCC+TGG - chr1_3:5032577-5032596 Msa0098990:CDS 60.0%
AGAGCCAAGCTCCTCGGAGA+AGG + chr1_3:5034109-5034128 None:intergenic 60.0%
TTCTCCGAGGAGCTTGGCTC+TGG - chr1_3:5034108-5034127 Msa0098990:intron 60.0%
AATGGTTGTAGGGGGGTGGG+GGG - chr1_3:5034554-5034573 Msa0098990:intron 60.0%
TCGGCTGCCTTGCAAAGCTG+TGG + chr1_3:5036540-5036559 None:intergenic 60.0%
GTGACGACGATGACTCCGGC+AGG + chr1_3:5032049-5032068 None:intergenic 65.0%
GCGGGTGACGACGATGACTC+CGG + chr1_3:5032053-5032072 None:intergenic 65.0%
AGTCATCGTCGTCACCCGCC+AGG - chr1_3:5032054-5032073 Msa0098990:three_prime_UTR 65.0%
CGCCGTAACAAGGGAGGGGA+AGG + chr1_3:5032093-5032112 None:intergenic 65.0%
GTTACGGCGGCCGCGATTTG+CGG - chr1_3:5032104-5032123 Msa0098990:three_prime_UTR 65.0%
ATGGTTGTAGGGGGGTGGGG+GGG - chr1_3:5034555-5034574 Msa0098990:intron 65.0%
CGGCCGCCGTAACAAGGGAG+GGG + chr1_3:5032097-5032116 None:intergenic 70.0%
GCGGCCGCCGTAACAAGGGA+GGG + chr1_3:5032098-5032117 None:intergenic 70.0%
AGGGCCGCCACCGCAAATCG+CGG + chr1_3:5032117-5032136 None:intergenic 70.0%
TGGTTGTAGGGGGGTGGGGG+GGG - chr1_3:5034556-5034575 Msa0098990:intron 70.0%
GGGGGATGGGGAGGGGGAAT+TGG - chr1_3:5034596-5034615 Msa0098990:intron 70.0%
CGCGGCCGCCGTAACAAGGG+AGG + chr1_3:5032099-5032118 None:intergenic 75.0%
ACGGCGGCCGCGATTTGCGG+TGG - chr1_3:5032107-5032126 Msa0098990:three_prime_UTR 75.0%
GCGGCCGCGATTTGCGGTGG+CGG - chr1_3:5032110-5032129 Msa0098990:three_prime_UTR 75.0%
GGTTGTAGGGGGGTGGGGGG+GGG - chr1_3:5034557-5034576 Msa0098990:intron 75.0%
GTTGTAGGGGGGTGGGGGGG+GGG - chr1_3:5034558-5034577 Msa0098990:intron 75.0%
TTGTAGGGGGGTGGGGGGGG+GGG - chr1_3:5034559-5034578 Msa0098990:intron 75.0%
! TGTAGGGGGGTGGGGGGGGG+GGG - chr1_3:5034560-5034579 Msa0098990:intron 80.0%
! GTAGGGGGGTGGGGGGGGGG+GGG - chr1_3:5034561-5034580 Msa0098990:intron 85.0%
! TAGGGGGGTGGGGGGGGGGG+GGG - chr1_3:5034562-5034581 Msa0098990:intron 85.0%
! GGGGGGGGGGGGGATGGGGA+GGG - chr1_3:5034588-5034607 Msa0098990:intron 85.0%
! GGGGGGGGGGGGATGGGGAG+GGG - chr1_3:5034589-5034608 Msa0098990:intron 85.0%
! GGGGGGGGGGGATGGGGAGG+GGG - chr1_3:5034590-5034609 Msa0098990:intron 85.0%
! AGGGGGGTGGGGGGGGGGGG+GGG - chr1_3:5034563-5034582 Msa0098990:intron 90.0%
! GGGGGGGGGGGGGGGGGGAT+GGG - chr1_3:5034583-5034602 Msa0098990:intron 90.0%
! GGGGGGGGGGGGGGGGGATG+GGG - chr1_3:5034584-5034603 Msa0098990:intron 90.0%
! GGGGGGGGGGGGGGATGGGG+AGG - chr1_3:5034587-5034606 Msa0098990:intron 90.0%
! GGGGGGTGGGGGGGGGGGGG+GGG - chr1_3:5034564-5034583 Msa0098990:intron 95.0%
! GGGGGTGGGGGGGGGGGGGG+GGG - chr1_3:5034565-5034584 Msa0098990:intron 95.0%
! GGGGTGGGGGGGGGGGGGGG+GGG - chr1_3:5034566-5034585 Msa0098990:intron 95.0%
! GGGTGGGGGGGGGGGGGGGG+GGG - chr1_3:5034567-5034586 Msa0098990:intron 95.0%
! GGTGGGGGGGGGGGGGGGGG+GGG - chr1_3:5034568-5034587 Msa0098990:intron 95.0%
! GTGGGGGGGGGGGGGGGGGG+GGG - chr1_3:5034569-5034588 Msa0098990:intron 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr1_3:5034570-5034589 Msa0098990:intron 95.0%
! GGGGGGGGGGGGGGGGGGGA+TGG - chr1_3:5034582-5034601 Msa0098990:intron 95.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 5031990 5037034 5031990 ID=Msa0098990;Name=Msa0098990
chr1_3 mRNA 5031990 5037034 5031990 ID=Msa0098990-mRNA-1;Parent=Msa0098990;Name=Msa0098990-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.66|0.75|1|0.66|0.75|4|354|376
chr1_3 exon 5031990 5033272 5031990 ID=Msa0098990-mRNA-1:exon:1785;Parent=Msa0098990-mRNA-1
chr1_3 exon 5036477 5036527 5036477 ID=Msa0098990-mRNA-1:exon:1784;Parent=Msa0098990-mRNA-1
chr1_3 exon 5036634 5036698 5036634 ID=Msa0098990-mRNA-1:exon:1783;Parent=Msa0098990-mRNA-1
chr1_3 exon 5036949 5037034 5036949 ID=Msa0098990-mRNA-1:exon:1782;Parent=Msa0098990-mRNA-1
chr1_3 CDS 5036949 5037034 5036949 ID=Msa0098990-mRNA-1:cds;Parent=Msa0098990-mRNA-1
chr1_3 CDS 5036634 5036698 5036634 ID=Msa0098990-mRNA-1:cds;Parent=Msa0098990-mRNA-1
chr1_3 CDS 5036477 5036527 5036477 ID=Msa0098990-mRNA-1:cds;Parent=Msa0098990-mRNA-1
chr1_3 CDS 5032344 5033272 5032344 ID=Msa0098990-mRNA-1:cds;Parent=Msa0098990-mRNA-1
chr1_3 three_prime_UTR 5031990 5032343 5031990 ID=Msa0098990-mRNA-1:three_prime_utr;Parent=Msa0098990-mRNA-1
Gene Sequence

>Msa0098990

CAACGAAGCTCAATTGCTCCATCAAAAGTTCTCATTTTACGTATCAGAAACAAACACCTGCCGGAGTCATCGTCGTCACCCGCCAGTACACAAGAGAAGAGAAGAGCTTCCATGGAGAACAACGGAGATATACCCGAGGATGCCAACGAACATTGCCCAGGTCCTCAGTCTGATTCTGCTGGAAAATCTGATGCATGTGAAGATATGGTTGCCATTGCCGAAAGAATGGCCACTGTGAAACATAAGATACTGGTCTTGTCAGGAAAGGGAGGTGTTGGCAAGAGCACATTTTCTGCCCAGCTGGCATTTGCGTTAGCTGCAAGGGATTTTCAAGTTGGTCTTCTGGACATTGATATTTGTGGTCCAAGCATCCCAAAGATGCTTGGCCTAGAAGGTCAAGAGATACACCAGAGCAACCTTGGTTGGTCTCCTGTCTATGTTGAGTCTAATCTCGGGGTCATGTCAATTGGGTTCATGCTTCCTCATCCAGACGAAGCTGTTATATGGAGAGGTCCACGCAAAAATGGGCTTATCAAGCAGTTTTTAAAAGACGTTTATTGGGGTGAACTTGATTTTCTAATTGTTGATGCTCCGCCTGGAACCTCAGATGAACACATTTCAATTGTTCAATGCCTAGATGCTGCTAATGTAGACGGTGCAATCATAGTTACCACTCCTCAACAAGTCTCTCTTATTGATGTGAAAAAAGAAGTGAATTTTTGCAAGAAAGTTGGAGTGAAAGTTCTTGGGGTTGTAGAGAATATGAGTGGCCTGTCCCAGCCCATCTCAAATCTCAAGTTTATGAAGATTACAGATAATGGTGAGATGAAAGATGTTACGGAGTGGATATCGGAGTACATGAAAGAAAAAGCGCCTGAAATGCTGAATTTAATCGCCTGCAGTGAAGTATTTGATAGTAGCGGTGGTGGAGCGTTGAAGATGTGTAACGAGATGGCGGTACCCTTTCTTGGTAAGGTTCCTTTAGATCCACAGCTTTGCAAGGCAGCCGAAGAAGGCAGATCCTGCTTTGCAGATAAAGATTGTGTTGTGAGCGCTCCAGCGTTACAAAAGATAATAGATAAGCTGATGGAAACTAGTGGGCTGTCAATGACGGAAAGCAATGGAGTGTAG

Protein sequence

>Msa0098990

QRSSIAPSKVLILRIRNKHLPESSSSPASTQEKRRASMENNGDIPEDANEHCPGPQSDSAGKSDACEDMVAIAERMATVKHKILVLSGKGGVGKSTFSAQLAFALAARDFQVGLLDIDICGPSIPKMLGLEGQEIHQSNLGWSPVYVESNLGVMSIGFMLPHPDEAVIWRGPRKNGLIKQFLKDVYWGELDFLIVDAPPGTSDEHISIVQCLDAANVDGAIIVTTPQQVSLIDVKKEVNFCKKVGVKVLGVVENMSGLSQPISNLKFMKITDNGEMKDVTEWISEYMKEKAPEMLNLIACSEVFDSSGGGALKMCNEMAVPFLGKVPLDPQLCKAAEEGRSCFADKDCVVSAPALQKIIDKLMETSGLSMTESNGV*