Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275480 | sp|Q9LRW7|IDD11_ARATH | 47.197 | 553 | 177 | 15 | 15 | 511 | 17 | 510 | 4.19e-140 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275480 | G7LHG9 | 90.769 | 520 | 32 | 5 | 1 | 511 | 1 | 513 | 0.0 | 854 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1275480 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020390 | Msa1275480 | -0.817717 | 2.852790e-52 | -8.615850e-47 |
| Msa0024930 | Msa1275480 | -0.809512 | 1.824047e-50 | -8.615850e-47 |
| Msa0036540 | Msa1275480 | -0.811701 | 6.137130e-51 | -8.615850e-47 |
| Msa0118540 | Msa1275480 | -0.826357 | 2.835382e-54 | -8.615850e-47 |
| Msa0608470 | Msa1275480 | -0.812348 | 4.436684e-51 | -8.615850e-47 |
| Msa0615580 | Msa1275480 | -0.837883 | 3.996829e-57 | -8.615850e-47 |
| Msa0617170 | Msa1275480 | -0.820279 | 7.459246e-53 | -8.615850e-47 |
| Msa0682680 | Msa1275480 | -0.818241 | 2.171672e-52 | -8.615850e-47 |
| Msa0709120 | Msa1275480 | -0.812285 | 4.577421e-51 | -8.615850e-47 |
| Msa0796580 | Msa1275480 | 0.809833 | 1.556006e-50 | -8.615850e-47 |
| Msa0139670 | Msa1275480 | -0.813296 | 2.750795e-51 | -8.615850e-47 |
| Msa0168800 | Msa1275480 | -0.806427 | 8.271870e-50 | -8.615850e-47 |
| Msa0183870 | Msa1275480 | -0.819452 | 1.153007e-52 | -8.615850e-47 |
| Msa0188350 | Msa1275480 | -0.809668 | 1.688760e-50 | -8.615850e-47 |
| Msa0207670 | Msa1275480 | -0.822725 | 2.031243e-53 | -8.615850e-47 |
| Msa0231100 | Msa1275480 | -0.808580 | 2.888041e-50 | -8.615850e-47 |
| Msa1232960 | Msa1275480 | 0.891774 | 2.922672e-74 | -8.615850e-47 |
| Msa1262890 | Msa1275480 | -0.821037 | 4.994258e-53 | -8.615850e-47 |
| Msa1275480 | Msa1310800 | 0.806924 | 6.494575e-50 | -8.615850e-47 |
| Msa1275480 | Msa1351540 | -0.838058 | 3.602734e-57 | -8.615850e-47 |
| Msa1275480 | Msa1435390 | -0.824812 | 6.589434e-54 | -8.615850e-47 |
| Msa1275480 | Msa1440930 | -0.802512 | 5.416210e-49 | -8.615850e-47 |
| Msa1275480 | Msa1454450 | -0.804937 | 1.699218e-49 | -8.615850e-47 |
| Msa1275480 | Msa1454680 | -0.806192 | 9.267575e-50 | -8.615850e-47 |
| Msa0385500 | Msa1275480 | -0.829544 | 4.851554e-55 | -8.615850e-47 |
| Msa0427860 | Msa1275480 | 0.824859 | 6.424761e-54 | -8.615850e-47 |
| Msa0445330 | Msa1275480 | -0.836052 | 1.172873e-56 | -8.615850e-47 |
| Msa0469620 | Msa1275480 | 0.812447 | 4.220976e-51 | -8.615850e-47 |
| Msa0474090 | Msa1275480 | 0.834706 | 2.566133e-56 | -8.615850e-47 |
| Msa1021520 | Msa1275480 | -0.839205 | 1.821111e-57 | -8.615850e-47 |
| Msa1060260 | Msa1275480 | -0.804740 | 1.868486e-49 | -8.615850e-47 |
| Msa0244980 | Msa1275480 | -0.803654 | 3.143706e-49 | -8.615850e-47 |
| Msa0257490 | Msa1275480 | -0.826167 | 3.146861e-54 | -8.615850e-47 |
| Msa0265430 | Msa1275480 | -0.801879 | 7.309176e-49 | -8.615850e-47 |
| Msa0281530 | Msa1275480 | -0.819304 | 1.245713e-52 | -8.615850e-47 |
| Msa0283420 | Msa1275480 | -0.806337 | 8.638817e-50 | -8.615850e-47 |
| Msa0296790 | Msa1275480 | -0.804865 | 1.759620e-49 | -8.615850e-47 |
| Msa0321690 | Msa1275480 | -0.813375 | 2.642580e-51 | -8.615850e-47 |
| Msa0357900 | Msa1275480 | -0.801181 | 1.016424e-48 | -8.615850e-47 |
| Msa1126830 | Msa1275480 | -0.805076 | 1.589203e-49 | -8.615850e-47 |
| Msa1128270 | Msa1275480 | -0.803937 | 2.746978e-49 | -8.615850e-47 |
| Msa1128280 | Msa1275480 | -0.812959 | 3.260139e-51 | -8.615850e-47 |
| Msa1133230 | Msa1275480 | -0.800795 | 1.218514e-48 | -8.615850e-47 |
| Msa1165270 | Msa1275480 | -0.814550 | 1.455187e-51 | -8.615850e-47 |
| Msa1165780 | Msa1275480 | -0.833102 | 6.467419e-56 | -8.615850e-47 |
| Msa1206270 | Msa1275480 | -0.805362 | 1.384576e-49 | -8.615850e-47 |
| Msa0581110 | Msa1275480 | -0.804296 | 2.313002e-49 | -8.615850e-47 |
| Msa0588260 | Msa1275480 | -0.815015 | 1.147975e-51 | -8.615850e-47 |
| Msa0892640 | Msa1275480 | -0.802739 | 4.863319e-49 | -8.615850e-47 |
| Msa0944610 | Msa1275480 | -0.813863 | 2.063853e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275480 | MtrunA17_Chr8g0342421 | 90.769 | 520 | 32 | 5 | 1 | 511 | 1 | 513 | 0.0 | 854 |
| Msa1275480 | MtrunA17_Chr2g0330171 | 57.965 | 521 | 135 | 21 | 18 | 511 | 1 | 464 | 1.32e-179 | 512 |
| Msa1275480 | MtrunA17_Chr1g0151351 | 48.069 | 518 | 189 | 15 | 1 | 509 | 1 | 447 | 1.73e-134 | 397 |
| Msa1275480 | MtrunA17_Chr4g0029521 | 45.243 | 515 | 210 | 16 | 29 | 505 | 8 | 488 | 2.45e-118 | 357 |
| Msa1275480 | MtrunA17_Chr1g0185121 | 53.866 | 388 | 117 | 12 | 18 | 385 | 6 | 351 | 4.71e-117 | 352 |
| Msa1275480 | MtrunA17_Chr1g0191991 | 61.218 | 312 | 87 | 7 | 58 | 356 | 61 | 351 | 5.56e-117 | 355 |
| Msa1275480 | MtrunA17_Chr8g0373541 | 76.812 | 207 | 35 | 2 | 17 | 223 | 3 | 196 | 7.80e-117 | 354 |
| Msa1275480 | MtrunA17_Chr7g0263941 | 55.068 | 365 | 115 | 11 | 57 | 409 | 31 | 358 | 9.81e-116 | 347 |
| Msa1275480 | MtrunA17_Chr1g0181381 | 55.241 | 353 | 101 | 8 | 55 | 359 | 34 | 377 | 2.18e-115 | 350 |
| Msa1275480 | MtrunA17_Chr4g0040571 | 86.471 | 170 | 21 | 1 | 54 | 223 | 35 | 202 | 3.71e-112 | 341 |
| Msa1275480 | MtrunA17_Chr1g0199101 | 88.415 | 164 | 19 | 0 | 58 | 221 | 45 | 208 | 5.86e-111 | 340 |
| Msa1275480 | MtrunA17_Chr1g0162971 | 55.132 | 341 | 91 | 9 | 60 | 354 | 41 | 365 | 1.28e-110 | 335 |
| Msa1275480 | MtrunA17_Chr1g0163001 | 84.302 | 172 | 27 | 0 | 55 | 226 | 38 | 209 | 1.49e-109 | 335 |
| Msa1275480 | MtrunA17_Chr7g0268961 | 52.991 | 351 | 120 | 9 | 70 | 403 | 32 | 354 | 5.90e-109 | 333 |
| Msa1275480 | MtrunA17_Chr1g0210821 | 87.500 | 160 | 20 | 0 | 63 | 222 | 47 | 206 | 1.37e-107 | 332 |
| Msa1275480 | MtrunA17_Chr2g0326381 | 68.981 | 216 | 56 | 4 | 59 | 265 | 31 | 244 | 1.26e-104 | 319 |
| Msa1275480 | MtrunA17_Chr3g0141431 | 77.576 | 165 | 34 | 2 | 53 | 216 | 17 | 179 | 3.32e-95 | 295 |
| Msa1275480 | MtrunA17_Chr2g0324991 | 87.786 | 131 | 16 | 0 | 71 | 201 | 3 | 133 | 9.96e-86 | 261 |
| Msa1275480 | MtrunA17_Chr6g0479921 | 65.385 | 156 | 53 | 1 | 60 | 214 | 29 | 184 | 1.08e-74 | 243 |
| Msa1275480 | MtrunA17_Chr8g0375521 | 64.103 | 156 | 54 | 2 | 60 | 213 | 27 | 182 | 1.90e-72 | 236 |
| Msa1275480 | MtrunA17_Chr2g0320341 | 34.839 | 155 | 87 | 3 | 69 | 209 | 224 | 378 | 6.17e-25 | 106 |
| Msa1275480 | MtrunA17_Chr3g0123941 | 35.897 | 156 | 92 | 3 | 65 | 212 | 113 | 268 | 9.67e-25 | 105 |
| Msa1275480 | MtrunA17_Chr1g0200421 | 34.731 | 167 | 92 | 5 | 59 | 212 | 224 | 386 | 2.95e-24 | 105 |
| Msa1275480 | MtrunA17_Chr5g0422571 | 36.184 | 152 | 84 | 6 | 83 | 223 | 108 | 257 | 5.54e-21 | 93.2 |
| Msa1275480 | MtrunA17_Chr8g0382121 | 34.459 | 148 | 86 | 5 | 73 | 209 | 109 | 256 | 8.37e-21 | 93.2 |
| Msa1275480 | MtrunA17_Chr7g0258011 | 33.333 | 159 | 86 | 6 | 83 | 223 | 183 | 339 | 6.53e-20 | 91.3 |
| Msa1275480 | MtrunA17_Chr1g0198651 | 33.333 | 156 | 89 | 6 | 83 | 225 | 109 | 262 | 1.85e-19 | 89.0 |
| Msa1275480 | MtrunA17_Chr8g0352011 | 35.252 | 139 | 80 | 4 | 83 | 212 | 173 | 310 | 1.91e-19 | 89.7 |
| Msa1275480 | MtrunA17_Chr4g0053341 | 32.911 | 158 | 95 | 5 | 64 | 212 | 63 | 218 | 7.99e-19 | 85.5 |
| Msa1275480 | MtrunA17_Chr1g0173841 | 34.286 | 140 | 80 | 5 | 83 | 212 | 222 | 359 | 1.43e-18 | 87.8 |
| Msa1275480 | MtrunA17_Chr2g0328921 | 33.571 | 140 | 81 | 5 | 83 | 212 | 145 | 282 | 6.07e-18 | 84.7 |
| Msa1275480 | MtrunA17_Chr4g0026521 | 34.286 | 140 | 80 | 5 | 83 | 212 | 125 | 262 | 9.27e-18 | 84.0 |
| Msa1275480 | MtrunA17_Chr2g0321291 | 35.714 | 140 | 78 | 6 | 83 | 212 | 140 | 277 | 2.26e-17 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275480 | AT3G13810.4 | 47.197 | 553 | 177 | 15 | 15 | 511 | 17 | 510 | 4.26e-141 | 416 |
| Msa1275480 | AT3G13810.1 | 47.197 | 553 | 177 | 15 | 15 | 511 | 17 | 510 | 4.26e-141 | 416 |
| Msa1275480 | AT3G13810.5 | 47.197 | 553 | 177 | 15 | 15 | 511 | 12 | 505 | 5.48e-141 | 416 |
| Msa1275480 | AT3G13810.6 | 47.091 | 550 | 176 | 15 | 18 | 511 | 1 | 491 | 2.95e-139 | 411 |
| Msa1275480 | AT1G55110.3 | 49.491 | 491 | 177 | 15 | 14 | 500 | 17 | 440 | 3.03e-133 | 394 |
| Msa1275480 | AT1G55110.1 | 49.491 | 491 | 177 | 15 | 14 | 500 | 17 | 440 | 3.03e-133 | 394 |
| Msa1275480 | AT1G55110.2 | 49.491 | 491 | 177 | 15 | 14 | 500 | 17 | 440 | 3.03e-133 | 394 |
| Msa1275480 | AT3G13810.2 | 44.902 | 559 | 187 | 15 | 15 | 511 | 12 | 511 | 2.87e-127 | 381 |
| Msa1275480 | AT3G13810.3 | 44.784 | 556 | 186 | 15 | 18 | 511 | 1 | 497 | 1.19e-125 | 376 |
| Msa1275480 | AT5G44160.1 | 48.317 | 416 | 177 | 8 | 29 | 410 | 8 | 419 | 2.69e-113 | 343 |
| Msa1275480 | AT1G03840.1 | 78.173 | 197 | 38 | 2 | 52 | 248 | 35 | 226 | 2.85e-112 | 342 |
| Msa1275480 | AT5G66730.1 | 75.362 | 207 | 34 | 2 | 17 | 222 | 4 | 194 | 3.02e-112 | 342 |
| Msa1275480 | AT3G50700.1 | 72.857 | 210 | 38 | 2 | 17 | 223 | 4 | 197 | 7.38e-112 | 339 |
| Msa1275480 | AT4G02670.2 | 51.715 | 379 | 109 | 12 | 27 | 399 | 19 | 329 | 1.78e-109 | 332 |
| Msa1275480 | AT4G02670.1 | 51.715 | 379 | 109 | 12 | 27 | 399 | 17 | 327 | 2.39e-109 | 331 |
| Msa1275480 | AT1G14580.1 | 72.277 | 202 | 52 | 1 | 21 | 222 | 18 | 215 | 4.47e-109 | 333 |
| Msa1275480 | AT1G14580.2 | 72.277 | 202 | 52 | 1 | 21 | 222 | 18 | 215 | 4.47e-109 | 333 |
| Msa1275480 | AT3G45260.2 | 81.768 | 181 | 24 | 2 | 60 | 231 | 39 | 219 | 4.53e-109 | 332 |
| Msa1275480 | AT3G45260.1 | 81.768 | 181 | 24 | 2 | 60 | 231 | 39 | 219 | 4.53e-109 | 332 |
| Msa1275480 | AT2G02080.1 | 51.397 | 358 | 110 | 9 | 58 | 362 | 52 | 398 | 5.17e-109 | 334 |
| Msa1275480 | AT2G02080.4 | 51.397 | 358 | 110 | 9 | 58 | 362 | 52 | 398 | 5.17e-109 | 334 |
| Msa1275480 | AT2G02080.5 | 51.397 | 358 | 110 | 9 | 58 | 362 | 52 | 398 | 5.17e-109 | 334 |
| Msa1275480 | AT2G02080.3 | 51.397 | 358 | 110 | 9 | 58 | 362 | 52 | 398 | 5.17e-109 | 334 |
| Msa1275480 | AT1G14580.3 | 72.277 | 202 | 52 | 1 | 21 | 222 | 32 | 229 | 7.62e-109 | 332 |
| Msa1275480 | AT1G03840.2 | 77.157 | 197 | 38 | 3 | 52 | 248 | 35 | 224 | 1.84e-108 | 332 |
| Msa1275480 | AT2G02070.2 | 79.888 | 179 | 34 | 1 | 60 | 238 | 52 | 228 | 6.42e-106 | 329 |
| Msa1275480 | AT2G02070.1 | 79.888 | 179 | 34 | 1 | 60 | 238 | 52 | 228 | 6.42e-106 | 329 |
| Msa1275480 | AT5G03150.1 | 74.129 | 201 | 40 | 3 | 60 | 257 | 53 | 244 | 4.32e-105 | 323 |
| Msa1275480 | AT5G44160.2 | 48.800 | 375 | 156 | 7 | 70 | 410 | 8 | 380 | 2.85e-104 | 319 |
| Msa1275480 | AT5G60470.3 | 74.332 | 187 | 44 | 2 | 40 | 225 | 23 | 206 | 1.19e-102 | 316 |
| Msa1275480 | AT5G60470.2 | 74.332 | 187 | 44 | 2 | 40 | 225 | 27 | 210 | 1.31e-102 | 316 |
| Msa1275480 | AT5G60470.1 | 73.988 | 173 | 43 | 2 | 52 | 222 | 26 | 198 | 2.73e-94 | 294 |
| Msa1275480 | AT2G02080.6 | 49.699 | 332 | 103 | 9 | 84 | 362 | 1 | 321 | 1.17e-93 | 292 |
| Msa1275480 | AT2G02080.2 | 49.699 | 332 | 103 | 9 | 84 | 362 | 1 | 321 | 1.17e-93 | 292 |
| Msa1275480 | AT1G25250.3 | 65.605 | 157 | 51 | 2 | 60 | 213 | 33 | 189 | 3.69e-74 | 239 |
| Msa1275480 | AT1G68130.1 | 65.385 | 156 | 52 | 2 | 60 | 213 | 41 | 196 | 1.54e-73 | 239 |
| Msa1275480 | AT2G01940.1 | 64.198 | 162 | 56 | 2 | 56 | 215 | 40 | 201 | 2.68e-73 | 239 |
| Msa1275480 | AT1G25250.1 | 62.577 | 163 | 56 | 3 | 56 | 213 | 4 | 166 | 3.54e-71 | 231 |
| Msa1275480 | AT2G01940.3 | 63.190 | 163 | 57 | 3 | 56 | 215 | 40 | 202 | 8.48e-70 | 230 |
| Msa1275480 | AT1G68130.2 | 66.364 | 110 | 35 | 2 | 106 | 213 | 1 | 110 | 3.69e-47 | 167 |
| Msa1275480 | AT1G25250.2 | 65.766 | 111 | 35 | 2 | 106 | 213 | 1 | 111 | 6.86e-47 | 166 |
| Msa1275480 | AT2G01940.2 | 64.286 | 112 | 38 | 2 | 106 | 215 | 1 | 112 | 7.10e-46 | 164 |
| Msa1275480 | AT1G34370.3 | 33.544 | 158 | 91 | 3 | 69 | 212 | 14 | 171 | 7.66e-24 | 102 |
| Msa1275480 | AT1G34370.2 | 33.544 | 158 | 91 | 3 | 69 | 212 | 224 | 381 | 1.41e-23 | 104 |
| Msa1275480 | AT1G34370.1 | 33.544 | 158 | 91 | 3 | 69 | 212 | 224 | 381 | 1.41e-23 | 104 |
| Msa1275480 | AT5G22890.1 | 33.735 | 166 | 94 | 5 | 61 | 212 | 191 | 354 | 1.87e-23 | 102 |
| Msa1275480 | AT1G13290.1 | 34.437 | 151 | 85 | 6 | 83 | 221 | 95 | 243 | 1.70e-19 | 89.7 |
| Msa1275480 | AT1G08290.1 | 33.908 | 174 | 93 | 8 | 59 | 212 | 141 | 312 | 1.23e-18 | 87.8 |
| Msa1275480 | AT1G51220.1 | 33.094 | 139 | 83 | 4 | 83 | 212 | 172 | 309 | 3.52e-18 | 86.3 |
| Msa1275480 | AT3G20880.1 | 31.447 | 159 | 93 | 5 | 83 | 226 | 250 | 407 | 3.98e-18 | 87.0 |
| Msa1275480 | AT3G57670.1 | 33.571 | 140 | 81 | 5 | 83 | 212 | 211 | 348 | 7.49e-18 | 85.9 |
| Msa1275480 | AT1G34790.1 | 33.557 | 149 | 89 | 4 | 73 | 212 | 129 | 276 | 5.86e-17 | 82.0 |
Find 117 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCTCACCATGCTTTC+TGG | 0.052883 | 8_3:+9441455 | None:intergenic |
| CACCAAACATTTCATCAAAT+TGG | 0.116876 | 8_3:+9439960 | None:intergenic |
| TTCTCTAGTGCCACATGTTT+TGG | 0.232714 | 8_3:+9441374 | None:intergenic |
| TGGACCTAACCTTGCCATTA+TGG | 0.238820 | 8_3:+9439722 | None:intergenic |
| TGTAATCATAAGATGGTAAA+AGG | 0.239938 | 8_3:-9442028 | Msa1275480:exon |
| TCTGGTAACAGAACTGAAAT+TGG | 0.252456 | 8_3:-9441923 | Msa1275480:CDS |
| GACGGTGGCGGCGGCGGCGG+TGG | 0.256977 | 8_3:-9439869 | Msa1275480:CDS |
| ATATATATCCCTTGTATATA+TGG | 0.257880 | 8_3:+9439702 | None:intergenic |
| CCTAGTCTTGTTCATGTTCC+TGG | 0.271217 | 8_3:-9440298 | Msa1275480:CDS |
| TATACAAGGGATATATATTA+TGG | 0.284154 | 8_3:-9439697 | Msa1275480:three_prime_UTR |
| CTTGTTGAGGATTATTGAAT+TGG | 0.287471 | 8_3:+9440497 | None:intergenic |
| CTTGGTAACATTATCAACTA+TGG | 0.291412 | 8_3:-9442469 | Msa1275480:five_prime_UTR |
| CATGATCCATCAAGAGCATT+AGG | 0.324615 | 8_3:-9441507 | Msa1275480:CDS |
| AAGAAACAAGAGATGATAAA+TGG | 0.329425 | 8_3:+9442388 | None:intergenic |
| CATCTTATGATTACAACTTA+AGG | 0.346954 | 8_3:+9442036 | None:intergenic |
| TGTTGTTGTGAGGGTAAAAT+TGG | 0.350354 | 8_3:+9440565 | None:intergenic |
| GGTGGCGGCGGCGGCGGTGG+AGG | 0.354091 | 8_3:-9439866 | Msa1275480:CDS |
| ATCAATCTCAAAAGCCATAA+TGG | 0.355765 | 8_3:-9439736 | Msa1275480:exon |
| AGGTTTGACAAGAGATTTCT+TGG | 0.358914 | 8_3:-9439837 | Msa1275480:CDS |
| CAAGAGATTTCTTGGGGCTT+AGG | 0.363505 | 8_3:-9439829 | Msa1275480:CDS |
| ACCAAACATTTCATCAAATT+GGG | 0.370739 | 8_3:+9439961 | None:intergenic |
| ATGATCCATCAAGAGCATTA+GGG | 0.372273 | 8_3:-9441506 | Msa1275480:CDS |
| GCCGCCGCCGCCACCGTCAT+TGG | 0.375307 | 8_3:+9439874 | None:intergenic |
| AATGACGGTGGCGGCGGCGG+CGG | 0.384989 | 8_3:-9439872 | Msa1275480:CDS |
| ATAGCTATAACCTCAGCATC+AGG | 0.391905 | 8_3:+9441714 | None:intergenic |
| AATAATGTCTCTGGTAACTT+TGG | 0.395509 | 8_3:-9440121 | Msa1275480:CDS |
| CTTCCACTACTTGTTGCTGT+TGG | 0.402652 | 8_3:+9441993 | None:intergenic |
| GGTGAAGCTAGTGTTTCTTC+TGG | 0.407702 | 8_3:-9441941 | Msa1275480:CDS |
| AAATCCCCTAATGCTCTTGA+TGG | 0.408372 | 8_3:+9441501 | None:intergenic |
| GTTGCAGAAAGCAGCTCAAA+TGG | 0.410516 | 8_3:-9440218 | Msa1275480:CDS |
| CATATTTGTGTGGCTATAGT+TGG | 0.415695 | 8_3:-9442498 | Msa1275480:five_prime_UTR |
| TCTGAAATTCCACCTTGGCT+TGG | 0.415974 | 8_3:-9440418 | Msa1275480:CDS |
| TGATGCACACAAGTTGGTTC+TGG | 0.417382 | 8_3:+9441528 | None:intergenic |
| AGTGACATTCTAAGTATTGC+AGG | 0.426084 | 8_3:-9439794 | Msa1275480:CDS |
| AATATGCTGTTCAATCTGAT+TGG | 0.427517 | 8_3:-9441407 | Msa1275480:CDS |
| ACCAATGACGGTGGCGGCGG+CGG | 0.436786 | 8_3:-9439875 | Msa1275480:CDS |
| ATTCTAAGTATTGCAGGGAT+TGG | 0.439295 | 8_3:-9439788 | Msa1275480:CDS |
| ACATGAACAAGACTAGGGTT+AGG | 0.441835 | 8_3:+9440304 | None:intergenic |
| ACCCAATTTGATGAAATGTT+TGG | 0.443043 | 8_3:-9439962 | Msa1275480:CDS |
| ATTTGTGAGATCTGCAACAA+AGG | 0.447156 | 8_3:-9441657 | Msa1275480:CDS |
| GTTCTTTGCTTCAACTTCCA+TGG | 0.449598 | 8_3:+9441585 | None:intergenic |
| GAAAACAAACCTGGGTTACC+AGG | 0.450492 | 8_3:+9441821 | None:intergenic |
| ACAAAACTTGTCTCTTGGGT+TGG | 0.456627 | 8_3:-9442346 | Msa1275480:five_prime_UTR |
| TCAAACTTAACTTCTGCATC+TGG | 0.461869 | 8_3:-9441962 | Msa1275480:CDS |
| GATTCTCTCAATAATGTCTC+TGG | 0.462323 | 8_3:-9440130 | Msa1275480:CDS |
| GAAGTAGTTGCAGTAGTTGT+TGG | 0.470353 | 8_3:+9440049 | None:intergenic |
| TGGGTCTTAATATTCATAGT+TGG | 0.475879 | 8_3:+9440160 | None:intergenic |
| GGTGCAACAATGAATAGAAC+TGG | 0.479773 | 8_3:-9440196 | Msa1275480:CDS |
| TCAAGTTCAACAACAATACT+TGG | 0.481347 | 8_3:-9441882 | Msa1275480:CDS |
| CCAGGAACATGAACAAGACT+AGG | 0.482912 | 8_3:+9440298 | None:intergenic |
| GAAGGTACTGTTTGGTAAGA+AGG | 0.483393 | 8_3:+9440265 | None:intergenic |
| TCAAGAAAGGTCCTTCCCTT+CGG | 0.488461 | 8_3:+9439578 | None:intergenic |
| AACTCAGAAACAGTTTATGA+AGG | 0.491373 | 8_3:+9442273 | None:intergenic |
| CATGAACAAGACTAGGGTTA+GGG | 0.500721 | 8_3:+9440305 | None:intergenic |
| GGTTTGACAAGAGATTTCTT+GGG | 0.503476 | 8_3:-9439836 | Msa1275480:CDS |
| AAAGCCATAATGGCAAGGTT+AGG | 0.503617 | 8_3:-9439726 | Msa1275480:exon |
| CAGAAACAGTTTATGAAGGA+TGG | 0.504519 | 8_3:+9442277 | None:intergenic |
| ACCACCAATGACGGTGGCGG+CGG | 0.504903 | 8_3:-9439878 | Msa1275480:CDS |
| GAACGAGAACAAGGACTAGT+TGG | 0.506113 | 8_3:+9442299 | None:intergenic |
| AGTATTGTTGTTGAACTTGA+GGG | 0.512238 | 8_3:+9441885 | None:intergenic |
| CATTATTGAGAGAATCAACT+TGG | 0.518652 | 8_3:+9440137 | None:intergenic |
| CTTAAGTTGTAATCATAAGA+TGG | 0.520015 | 8_3:-9442035 | Msa1275480:exon |
| ATTTAGTTACCTTGAGAAGA+GGG | 0.520888 | 8_3:+9441332 | None:intergenic |
| GAGAGATGATCAACATTATG+TGG | 0.524492 | 8_3:+9440394 | None:intergenic |
| CAATTTGATGAAATGTTTGG+TGG | 0.530509 | 8_3:-9439959 | Msa1275480:CDS |
| GAAAGCATGGTGAGAAGAAG+TGG | 0.533075 | 8_3:-9441452 | Msa1275480:CDS |
| GCCGCCGCCACCGTCATTGG+TGG | 0.534618 | 8_3:+9439877 | None:intergenic |
| AAGTATTGTTGTTGAACTTG+AGG | 0.537745 | 8_3:+9441884 | None:intergenic |
| GGCGGCGGTGGAGGAAATGA+AGG | 0.543312 | 8_3:-9439857 | Msa1275480:CDS |
| TTGCAGAAAGCAGCTCAAAT+GGG | 0.549522 | 8_3:-9440217 | Msa1275480:CDS |
| GTTGATATTTATCTTTCCGA+AGG | 0.552271 | 8_3:-9439594 | Msa1275480:three_prime_UTR |
| TATTTATCTTTCCGAAGGGA+AGG | 0.556302 | 8_3:-9439589 | Msa1275480:three_prime_UTR |
| TAAGAAGGGAGTGTGGGTCC+AGG | 0.557369 | 8_3:+9440280 | None:intergenic |
| AGGTTAGGTCCATATATACA+AGG | 0.558378 | 8_3:-9439711 | Msa1275480:three_prime_UTR |
| AAATTATGAAAATCTTGTTG+AGG | 0.561862 | 8_3:+9440484 | None:intergenic |
| AGAGCATTAGGGGATTTGAC+TGG | 0.562614 | 8_3:-9441495 | Msa1275480:CDS |
| ACATTATGTGGGCCAAGCCA+AGG | 0.564626 | 8_3:+9440406 | None:intergenic |
| ATTGAGAGAATCAACTTGGT+GGG | 0.565155 | 8_3:+9440141 | None:intergenic |
| AAGGTACTGTTTGGTAAGAA+GGG | 0.566686 | 8_3:+9440266 | None:intergenic |
| ACCTTTCTGAAATTCCACCT+TGG | 0.568922 | 8_3:-9440423 | Msa1275480:CDS |
| GCCAAGGTGGAATTTCAGAA+AGG | 0.572630 | 8_3:+9440422 | None:intergenic |
| GTTCCAACAGCAACAAGTAG+TGG | 0.573848 | 8_3:-9441996 | Msa1275480:CDS |
| GATGAAGGTTGTTGTTGTGA+GGG | 0.574323 | 8_3:+9440556 | None:intergenic |
| AATCTTCAACTTCACAGAAG+AGG | 0.577210 | 8_3:-9441618 | Msa1275480:CDS |
| ATATTAGGATCATTCAAGAA+AGG | 0.582239 | 8_3:+9439565 | None:intergenic |
| AATTTAGTTACCTTGAGAAG+AGG | 0.584975 | 8_3:+9441331 | None:intergenic |
| TATTGAGAGAATCAACTTGG+TGG | 0.585481 | 8_3:+9440140 | None:intergenic |
| ACAACCACCAATGACGGTGG+CGG | 0.585647 | 8_3:-9439881 | Msa1275480:CDS |
| TGTGAGCTGAAGGTACTGTT+TGG | 0.586948 | 8_3:+9440257 | None:intergenic |
| AGAAACCTCCCTGGTAACCC+AGG | 0.588025 | 8_3:-9441830 | Msa1275480:intron |
| TCTAAAACAACCACCAATGA+CGG | 0.588296 | 8_3:-9439887 | Msa1275480:CDS |
| GTGACATTCTAAGTATTGCA+GGG | 0.598839 | 8_3:-9439793 | Msa1275480:CDS |
| TTGATATTTATCTTTCCGAA+GGG | 0.602656 | 8_3:-9439593 | Msa1275480:three_prime_UTR |
| TGATGAAGGTTGTTGTTGTG+AGG | 0.603801 | 8_3:+9440555 | None:intergenic |
| GTTTGACAAGAGATTTCTTG+GGG | 0.605661 | 8_3:-9439835 | Msa1275480:CDS |
| TGAAGGATGGAACGAGAACA+AGG | 0.609167 | 8_3:+9442290 | None:intergenic |
| TGATGAGAAGATGATGATGA+AGG | 0.612181 | 8_3:+9440541 | None:intergenic |
| TGATCCATCAAGAGCATTAG+GGG | 0.622634 | 8_3:-9441505 | Msa1275480:CDS |
| TCTCAAAAGCCATAATGGCA+AGG | 0.624310 | 8_3:-9439731 | Msa1275480:exon |
| TGGGTTGCTTCAAATCCAGA+AGG | 0.625506 | 8_3:+9439980 | None:intergenic |
| GTTTGGTAAGAAGGGAGTGT+GGG | 0.626393 | 8_3:+9440274 | None:intergenic |
| TGTTTGGTAAGAAGGGAGTG+TGG | 0.632667 | 8_3:+9440273 | None:intergenic |
| CAGGAACATGAACAAGACTA+GGG | 0.634110 | 8_3:+9440299 | None:intergenic |
| ACTGTGGAACCCTCTTCTCA+AGG | 0.634375 | 8_3:-9441341 | Msa1275480:intron |
| AGAATGTCACTATGTGACAA+TGG | 0.635720 | 8_3:+9439806 | None:intergenic |
| GAAGAGGTCATAATTTACCA+TGG | 0.635939 | 8_3:-9441602 | Msa1275480:CDS |
| TAGCTATAACCTCAGCATCA+GGG | 0.639613 | 8_3:+9441715 | None:intergenic |
| AGAGATGATCAACATTATGT+GGG | 0.641603 | 8_3:+9440395 | None:intergenic |
| GGATCATGATGCACACAAGT+TGG | 0.642093 | 8_3:+9441522 | None:intergenic |
| AAAACAAACCTGGGTTACCA+GGG | 0.660704 | 8_3:+9441822 | None:intergenic |
| ACAAACCTGGGTTACCAGGG+AGG | 0.662065 | 8_3:+9441825 | None:intergenic |
| AAAACAACCACCAATGACGG+TGG | 0.670222 | 8_3:-9439884 | Msa1275480:CDS |
| GTAGCTGACATGTGAGCTGA+AGG | 0.671459 | 8_3:+9440247 | None:intergenic |
| AAAGCTCATTCCAAAACATG+TGG | 0.678165 | 8_3:-9441384 | Msa1275480:CDS |
| TTATGTGGGCCAAGCCAAGG+TGG | 0.692215 | 8_3:+9440409 | None:intergenic |
| GGTTAGGTCCATATATACAA+GGG | 0.692410 | 8_3:-9439710 | Msa1275480:three_prime_UTR |
| AGAGAATATAGATGTGACTG+TGG | 0.703138 | 8_3:-9441357 | Msa1275480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCACATTATTAATATTA+AGG | - | chr8_3:9440930-9440949 | Msa1275480:intron | 10.0% |
| !! | GTAAAACTATATAATATTAA+GGG | + | chr8_3:9441125-9441144 | None:intergenic | 10.0% |
| !! | TGTAAAACTATATAATATTA+AGG | + | chr8_3:9441126-9441145 | None:intergenic | 10.0% |
| !!! | ATTTTTATTCTTTTTCATTT+TGG | - | chr8_3:9442483-9442502 | Msa1275480:five_prime_UTR | 10.0% |
| !! | TTTGATAAACATGTTATTAA+TGG | - | chr8_3:9440350-9440369 | Msa1275480:CDS | 15.0% |
| !! | TTGATAAACATGTTATTAAT+GGG | - | chr8_3:9440351-9440370 | Msa1275480:CDS | 15.0% |
| !! | TTAATTTCATTCATTTATGA+AGG | - | chr8_3:9440861-9440880 | Msa1275480:intron | 15.0% |
| !!! | AGTTTAAAATGTTTTCTTTT+TGG | + | chr8_3:9441015-9441034 | None:intergenic | 15.0% |
| !! | TATGAACAAAAATATAGACT+TGG | + | chr8_3:9439610-9439629 | None:intergenic | 20.0% |
| !!! | TATTTTTGTTCATATTTGTG+TGG | - | chr8_3:9439616-9439635 | Msa1275480:three_prime_UTR | 20.0% |
| !!! | ATATGTTGGTAATGTTTTTA+TGG | + | chr8_3:9439997-9440016 | None:intergenic | 20.0% |
| !! | AACAAAACAAAACAAAAAGA+AGG | + | chr8_3:9440331-9440350 | None:intergenic | 20.0% |
| !!! | TTAATGGGTTTTTTTTTGTT+TGG | - | chr8_3:9440366-9440385 | Msa1275480:CDS | 20.0% |
| !! | CATTAAAAAATTTCCTTACT+AGG | + | chr8_3:9441261-9441280 | None:intergenic | 20.0% |
| !! | AAGACAAATAGTCTATTATT+AGG | + | chr8_3:9441289-9441308 | None:intergenic | 20.0% |
| !! | AAATTATGAAAATCTTGTTG+AGG | + | chr8_3:9441643-9441662 | None:intergenic | 20.0% |
| !! | ATATATATCCCTTGTATATA+TGG | + | chr8_3:9442425-9442444 | None:intergenic | 20.0% |
| !! | TATACAAGGGATATATATTA+TGG | - | chr8_3:9442427-9442446 | Msa1275480:five_prime_UTR | 20.0% |
| !!! | GGATATATATTATGGATTTT+TGG | - | chr8_3:9442435-9442454 | Msa1275480:five_prime_UTR | 20.0% |
| !!! | TTTATTCTTTTTCATTTTGG+TGG | - | chr8_3:9442486-9442505 | Msa1275480:five_prime_UTR | 20.0% |
| ! | AAGAAACAAGAGATGATAAA+TGG | + | chr8_3:9439739-9439758 | None:intergenic | 25.0% |
| ! | AAAAAACAAAACTTGTCTCT+TGG | - | chr8_3:9439773-9439792 | Msa1275480:CDS | 25.0% |
| ! | AAAAACAAAACTTGTCTCTT+GGG | - | chr8_3:9439774-9439793 | Msa1275480:CDS | 25.0% |
| !!! | GTTTTTTTGGTGATATAGTT+TGG | + | chr8_3:9439806-9439825 | None:intergenic | 25.0% |
| !! | TTGTGTTCTTTTTCTGTTTT+TGG | - | chr8_3:9439946-9439965 | Msa1275480:CDS | 25.0% |
| !!! | TCTTTGTGTTTTTGATATGT+TGG | + | chr8_3:9440011-9440030 | None:intergenic | 25.0% |
| ! | CAAAAACACAAAGATCTATA+TGG | - | chr8_3:9440017-9440036 | Msa1275480:CDS | 25.0% |
| ! | CATCTTATGATTACAACTTA+AGG | + | chr8_3:9440091-9440110 | None:intergenic | 25.0% |
| !! | CTTAAGTTGTAATCATAAGA+TGG | - | chr8_3:9440089-9440108 | Msa1275480:CDS | 25.0% |
| ! | TGTAATCATAAGATGGTAAA+AGG | - | chr8_3:9440096-9440115 | Msa1275480:CDS | 25.0% |
| !!! | TTTTTTTTCATTGGTTGAGT+TGG | + | chr8_3:9440273-9440292 | None:intergenic | 25.0% |
| !!! | AGGTTTCTCTTTTTTTTCAT+TGG | + | chr8_3:9440282-9440301 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTAGTAAACTCTT+TGG | + | chr8_3:9440440-9440459 | None:intergenic | 25.0% |
| ! | ATTTCATTCATTTATGAAGG+TGG | - | chr8_3:9440864-9440883 | Msa1275480:intron | 25.0% |
| ! | ACTATATTTGACTCCTTAAT+CGG | - | chr8_3:9441074-9441093 | Msa1275480:intron | 25.0% |
| ! | AGAATGGAATTAGTGATTAT+GGG | + | chr8_3:9441220-9441239 | None:intergenic | 25.0% |
| ! | AAGAATGGAATTAGTGATTA+TGG | + | chr8_3:9441221-9441240 | None:intergenic | 25.0% |
| ! | TAATCACTAATTCCATTCTT+TGG | - | chr8_3:9441221-9441240 | Msa1275480:intron | 25.0% |
| !!! | GTTGCTCTTTTTTCAATAAT+GGG | + | chr8_3:9441666-9441685 | None:intergenic | 25.0% |
| !!! | TGTTGCTCTTTTTTCAATAA+TGG | + | chr8_3:9441667-9441686 | None:intergenic | 25.0% |
| ! | ACCAAACATTTCATCAAATT+GGG | + | chr8_3:9442166-9442185 | None:intergenic | 25.0% |
| ! | TTGATATTTATCTTTCCGAA+GGG | - | chr8_3:9442531-9442550 | Msa1275480:five_prime_UTR | 25.0% |
| ! | CTTGGTAACATTATCAACTA+TGG | - | chr8_3:9439655-9439674 | Msa1275480:three_prime_UTR | 30.0% |
| AACTCAGAAACAGTTTATGA+AGG | + | chr8_3:9439854-9439873 | None:intergenic | 30.0% | |
| !!! | TTCTTTTTCTGTTTTTGGCA+AGG | - | chr8_3:9439951-9439970 | Msa1275480:CDS | 30.0% |
| ! | AGTATTGTTGTTGAACTTGA+GGG | + | chr8_3:9440242-9440261 | None:intergenic | 30.0% |
| ! | AAGTATTGTTGTTGAACTTG+AGG | + | chr8_3:9440243-9440262 | None:intergenic | 30.0% |
| TCAAGTTCAACAACAATACT+TGG | - | chr8_3:9440242-9440261 | Msa1275480:CDS | 30.0% | |
| AGAGTTTACTAGCAAAAAAC+AGG | - | chr8_3:9440441-9440460 | Msa1275480:CDS | 30.0% | |
| AATATGCTGTTCAATCTGAT+TGG | - | chr8_3:9440717-9440736 | Msa1275480:intron | 30.0% | |
| ATTTAGTTACCTTGAGAAGA+GGG | + | chr8_3:9440795-9440814 | None:intergenic | 30.0% | |
| AATTTAGTTACCTTGAGAAG+AGG | + | chr8_3:9440796-9440815 | None:intergenic | 30.0% | |
| !!! | TAGGTTTTGAATTGTATCCT+AGG | - | chr8_3:9440890-9440909 | Msa1275480:intron | 30.0% |
| ! | ATTCCATTCTTTGGAAAAAG+TGG | - | chr8_3:9441230-9441249 | Msa1275480:intron | 30.0% |
| !!! | TTTCCACTTTTTCCAAAGAA+TGG | + | chr8_3:9441236-9441255 | None:intergenic | 30.0% |
| AAAAGTGGAAATTCCTAGTA+AGG | - | chr8_3:9441245-9441264 | Msa1275480:intron | 30.0% | |
| ! | TTTATGATGAGTTTTGCAGA+AGG | - | chr8_3:9441458-9441477 | Msa1275480:CDS | 30.0% |
| ! | TTATGATGAGTTTTGCAGAA+GGG | - | chr8_3:9441459-9441478 | Msa1275480:CDS | 30.0% |
| CTTGTTGAGGATTATTGAAT+TGG | + | chr8_3:9441630-9441649 | None:intergenic | 30.0% | |
| AGAGATGATCAACATTATGT+GGG | + | chr8_3:9441732-9441751 | None:intergenic | 30.0% | |
| TGGGTCTTAATATTCATAGT+TGG | + | chr8_3:9441967-9441986 | None:intergenic | 30.0% | |
| CATTATTGAGAGAATCAACT+TGG | + | chr8_3:9441990-9442009 | None:intergenic | 30.0% | |
| AATAATGTCTCTGGTAACTT+TGG | - | chr8_3:9442003-9442022 | Msa1275480:CDS | 30.0% | |
| ACCCAATTTGATGAAATGTT+TGG | - | chr8_3:9442162-9442181 | Msa1275480:five_prime_UTR | 30.0% | |
| CACCAAACATTTCATCAAAT+TGG | + | chr8_3:9442167-9442186 | None:intergenic | 30.0% | |
| CAATTTGATGAAATGTTTGG+TGG | - | chr8_3:9442165-9442184 | Msa1275480:five_prime_UTR | 30.0% | |
| ATCAATCTCAAAAGCCATAA+TGG | - | chr8_3:9442388-9442407 | Msa1275480:five_prime_UTR | 30.0% | |
| GTTGATATTTATCTTTCCGA+AGG | - | chr8_3:9442530-9442549 | Msa1275480:five_prime_UTR | 30.0% | |
| CATATTTGTGTGGCTATAGT+TGG | - | chr8_3:9439626-9439645 | Msa1275480:three_prime_UTR | 35.0% | |
| ! | GGCTATAGTTGGATTTTTCT+TGG | - | chr8_3:9439637-9439656 | Msa1275480:three_prime_UTR | 35.0% |
| !!! | CAAGGACTAGTTGGTTTTTT+TGG | + | chr8_3:9439819-9439838 | None:intergenic | 35.0% |
| CAGAAACAGTTTATGAAGGA+TGG | + | chr8_3:9439850-9439869 | None:intergenic | 35.0% | |
| !!! | GGTTTTGTTCTAGAAAGCTA+AGG | + | chr8_3:9440070-9440089 | None:intergenic | 35.0% |
| TCAAACTTAACTTCTGCATC+TGG | - | chr8_3:9440162-9440181 | Msa1275480:CDS | 35.0% | |
| TCTGGTAACAGAACTGAAAT+TGG | - | chr8_3:9440201-9440220 | Msa1275480:CDS | 35.0% | |
| !!! | TTTTTCATTGGTTGAGTTGG+AGG | + | chr8_3:9440270-9440289 | None:intergenic | 35.0% |
| AAAAAAAAGAGAAACCTCCC+TGG | - | chr8_3:9440285-9440304 | Msa1275480:CDS | 35.0% | |
| AGAAGGTTGAAAACAAACCT+GGG | + | chr8_3:9440314-9440333 | None:intergenic | 35.0% | |
| AAGAAGGTTGAAAACAAACC+TGG | + | chr8_3:9440315-9440334 | None:intergenic | 35.0% | |
| ATTTGTGAGATCTGCAACAA+AGG | - | chr8_3:9440467-9440486 | Msa1275480:CDS | 35.0% | |
| AATCTTCAACTTCACAGAAG+AGG | - | chr8_3:9440506-9440525 | Msa1275480:CDS | 35.0% | |
| GAAGAGGTCATAATTTACCA+TGG | - | chr8_3:9440522-9440541 | Msa1275480:CDS | 35.0% | |
| !! | ATGATCCATCAAGAGCATTA+GGG | - | chr8_3:9440618-9440637 | Msa1275480:CDS | 35.0% |
| AAAGCTCATTCCAAAACATG+TGG | - | chr8_3:9440740-9440759 | Msa1275480:intron | 35.0% | |
| AGAGAATATAGATGTGACTG+TGG | - | chr8_3:9440767-9440786 | Msa1275480:intron | 35.0% | |
| TCATTTATGAAGGTGGTCAT+AGG | - | chr8_3:9440871-9440890 | Msa1275480:intron | 35.0% | |
| ! | ATTGTATCCTAGGTTGACTT+TGG | - | chr8_3:9440900-9440919 | Msa1275480:intron | 35.0% |
| TCATGTTATCCAATGTCTCT+GGG | - | chr8_3:9440953-9440972 | Msa1275480:intron | 35.0% | |
| ACACACTTGATTTCTTGCAT+CGG | - | chr8_3:9441157-9441176 | Msa1275480:intron | 35.0% | |
| TAAAGAGAGAGAGAGAGAAA+AGG | - | chr8_3:9441347-9441366 | Msa1275480:CDS | 35.0% | |
| TGTTGTTGTGAGGGTAAAAT+TGG | + | chr8_3:9441562-9441581 | None:intergenic | 35.0% | |
| ! | TGATGAGAAGATGATGATGA+AGG | + | chr8_3:9441586-9441605 | None:intergenic | 35.0% |
| GAGAGATGATCAACATTATG+TGG | + | chr8_3:9441733-9441752 | None:intergenic | 35.0% | |
| !! | AAGGTACTGTTTGGTAAGAA+GGG | + | chr8_3:9441861-9441880 | None:intergenic | 35.0% |
| ATTGAGAGAATCAACTTGGT+GGG | + | chr8_3:9441986-9442005 | None:intergenic | 35.0% | |
| TATTGAGAGAATCAACTTGG+TGG | + | chr8_3:9441987-9442006 | None:intergenic | 35.0% | |
| GATTCTCTCAATAATGTCTC+TGG | - | chr8_3:9441994-9442013 | Msa1275480:CDS | 35.0% | |
| ! | TTTTCTTCTTCATCTCCTTC+TGG | - | chr8_3:9442129-9442148 | Msa1275480:five_prime_UTR | 35.0% |
| ! | TCTAAAACAACCACCAATGA+CGG | - | chr8_3:9442237-9442256 | Msa1275480:five_prime_UTR | 35.0% |
| AGGTTTGACAAGAGATTTCT+TGG | - | chr8_3:9442287-9442306 | Msa1275480:five_prime_UTR | 35.0% | |
| GGTTTGACAAGAGATTTCTT+GGG | - | chr8_3:9442288-9442307 | Msa1275480:five_prime_UTR | 35.0% | |
| GTTTGACAAGAGATTTCTTG+GGG | - | chr8_3:9442289-9442308 | Msa1275480:five_prime_UTR | 35.0% | |
| AGAATGTCACTATGTGACAA+TGG | + | chr8_3:9442321-9442340 | None:intergenic | 35.0% | |
| ! | AGTGACATTCTAAGTATTGC+AGG | - | chr8_3:9442330-9442349 | Msa1275480:five_prime_UTR | 35.0% |
| ! | GTGACATTCTAAGTATTGCA+GGG | - | chr8_3:9442331-9442350 | Msa1275480:five_prime_UTR | 35.0% |
| ! | ATTCTAAGTATTGCAGGGAT+TGG | - | chr8_3:9442336-9442355 | Msa1275480:five_prime_UTR | 35.0% |
| AGGTTAGGTCCATATATACA+AGG | - | chr8_3:9442413-9442432 | Msa1275480:five_prime_UTR | 35.0% | |
| GGTTAGGTCCATATATACAA+GGG | - | chr8_3:9442414-9442433 | Msa1275480:five_prime_UTR | 35.0% | |
| TATTTATCTTTCCGAAGGGA+AGG | - | chr8_3:9442535-9442554 | Msa1275480:five_prime_UTR | 35.0% | |
| ACAAAACTTGTCTCTTGGGT+TGG | - | chr8_3:9439778-9439797 | Msa1275480:CDS | 40.0% | |
| AAAACAAACCTGGGTTACCA+GGG | + | chr8_3:9440305-9440324 | None:intergenic | 40.0% | |
| TAGCTATAACCTCAGCATCA+GGG | + | chr8_3:9440412-9440431 | None:intergenic | 40.0% | |
| ATAGCTATAACCTCAGCATC+AGG | + | chr8_3:9440413-9440432 | None:intergenic | 40.0% | |
| GTTCTTTGCTTCAACTTCCA+TGG | + | chr8_3:9440542-9440561 | None:intergenic | 40.0% | |
| !! | CATGATCCATCAAGAGCATT+AGG | - | chr8_3:9440617-9440636 | Msa1275480:CDS | 40.0% |
| !! | TGATCCATCAAGAGCATTAG+GGG | - | chr8_3:9440619-9440638 | Msa1275480:CDS | 40.0% |
| AAATCCCCTAATGCTCTTGA+TGG | + | chr8_3:9440626-9440645 | None:intergenic | 40.0% | |
| ! | AAGCACTTTTCCAGAAAGCA+TGG | - | chr8_3:9440659-9440678 | Msa1275480:intron | 40.0% |
| ! | TTCTCTAGTGCCACATGTTT+TGG | + | chr8_3:9440753-9440772 | None:intergenic | 40.0% |
| TTATGCACCAAAGTCAACCT+AGG | + | chr8_3:9440910-9440929 | None:intergenic | 40.0% | |
| GTCATGTTATCCAATGTCTC+TGG | - | chr8_3:9440952-9440971 | Msa1275480:intron | 40.0% | |
| !!! | CCTCTTTTGACTTCGTTAAC+CGG | + | chr8_3:9440982-9441001 | None:intergenic | 40.0% |
| ! | GATGAAGGTTGTTGTTGTGA+GGG | + | chr8_3:9441571-9441590 | None:intergenic | 40.0% |
| ! | TGATGAAGGTTGTTGTTGTG+AGG | + | chr8_3:9441572-9441591 | None:intergenic | 40.0% |
| !! | ACCTTTCTGAAATTCCACCT+TGG | - | chr8_3:9441701-9441720 | Msa1275480:CDS | 40.0% |
| CATGAACAAGACTAGGGTTA+GGG | + | chr8_3:9441822-9441841 | None:intergenic | 40.0% | |
| ACATGAACAAGACTAGGGTT+AGG | + | chr8_3:9441823-9441842 | None:intergenic | 40.0% | |
| CAGGAACATGAACAAGACTA+GGG | + | chr8_3:9441828-9441847 | None:intergenic | 40.0% | |
| !! | GAAGGTACTGTTTGGTAAGA+AGG | + | chr8_3:9441862-9441881 | None:intergenic | 40.0% |
| TTGCAGAAAGCAGCTCAAAT+GGG | - | chr8_3:9441907-9441926 | Msa1275480:CDS | 40.0% | |
| GGTGCAACAATGAATAGAAC+TGG | - | chr8_3:9441928-9441947 | Msa1275480:CDS | 40.0% | |
| GAAGTAGTTGCAGTAGTTGT+TGG | + | chr8_3:9442078-9442097 | None:intergenic | 40.0% | |
| TCTCAAAAGCCATAATGGCA+AGG | - | chr8_3:9442393-9442412 | Msa1275480:five_prime_UTR | 40.0% | |
| AAAGCCATAATGGCAAGGTT+AGG | - | chr8_3:9442398-9442417 | Msa1275480:five_prime_UTR | 40.0% | |
| ! | GAACGAGAACAAGGACTAGT+TGG | + | chr8_3:9439828-9439847 | None:intergenic | 45.0% |
| TGAAGGATGGAACGAGAACA+AGG | + | chr8_3:9439837-9439856 | None:intergenic | 45.0% | |
| GTTCCAACAGCAACAAGTAG+TGG | - | chr8_3:9440128-9440147 | Msa1275480:CDS | 45.0% | |
| ! | CTTCCACTACTTGTTGCTGT+TGG | + | chr8_3:9440134-9440153 | None:intergenic | 45.0% |
| GGTGAAGCTAGTGTTTCTTC+TGG | - | chr8_3:9440183-9440202 | Msa1275480:CDS | 45.0% | |
| GAAAACAAACCTGGGTTACC+AGG | + | chr8_3:9440306-9440325 | None:intergenic | 45.0% | |
| !! | TTTTTCAGACCCTGATGCTG+AGG | - | chr8_3:9440400-9440419 | Msa1275480:CDS | 45.0% |
| !! | TGATGCACACAAGTTGGTTC+TGG | + | chr8_3:9440599-9440618 | None:intergenic | 45.0% |
| GGATCATGATGCACACAAGT+TGG | + | chr8_3:9440605-9440624 | None:intergenic | 45.0% | |
| ! | AGAGCATTAGGGGATTTGAC+TGG | - | chr8_3:9440629-9440648 | Msa1275480:CDS | 45.0% |
| CTTCTTCTCACCATGCTTTC+TGG | + | chr8_3:9440672-9440691 | None:intergenic | 45.0% | |
| ! | GAAAGCATGGTGAGAAGAAG+TGG | - | chr8_3:9440672-9440691 | Msa1275480:intron | 45.0% |
| CCGGTTAACGAAGTCAAAAG+AGG | - | chr8_3:9440979-9440998 | Msa1275480:intron | 45.0% | |
| ! | TGACTCCTTAATCGGTGTTC+CGG | - | chr8_3:9441082-9441101 | Msa1275480:intron | 45.0% |
| GGAAATGCTAATAGTGTCCC+CGG | + | chr8_3:9441104-9441123 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAAAAGG+AGG | - | chr8_3:9441350-9441369 | Msa1275480:CDS | 45.0% | |
| GAGAGAGAGAGAGAAAAGGA+GGG | - | chr8_3:9441351-9441370 | Msa1275480:CDS | 45.0% | |
| GCCAAGGTGGAATTTCAGAA+AGG | + | chr8_3:9441705-9441724 | None:intergenic | 45.0% | |
| ! | TCTGAAATTCCACCTTGGCT+TGG | - | chr8_3:9441706-9441725 | Msa1275480:CDS | 45.0% |
| CCAGGAACATGAACAAGACT+AGG | + | chr8_3:9441829-9441848 | None:intergenic | 45.0% | |
| !! | CCTAGTCTTGTTCATGTTCC+TGG | - | chr8_3:9441826-9441845 | Msa1275480:intron | 45.0% |
| ! | GTTTGGTAAGAAGGGAGTGT+GGG | + | chr8_3:9441853-9441872 | None:intergenic | 45.0% |
| TGTTTGGTAAGAAGGGAGTG+TGG | + | chr8_3:9441854-9441873 | None:intergenic | 45.0% | |
| !! | TGTGAGCTGAAGGTACTGTT+TGG | + | chr8_3:9441870-9441889 | None:intergenic | 45.0% |
| GTTGCAGAAAGCAGCTCAAA+TGG | - | chr8_3:9441906-9441925 | Msa1275480:CDS | 45.0% | |
| TGGGTTGCTTCAAATCCAGA+AGG | + | chr8_3:9442147-9442166 | None:intergenic | 45.0% | |
| AAAACAACCACCAATGACGG+TGG | - | chr8_3:9442240-9442259 | Msa1275480:five_prime_UTR | 45.0% | |
| CAAGAGATTTCTTGGGGCTT+AGG | - | chr8_3:9442295-9442314 | Msa1275480:five_prime_UTR | 45.0% | |
| TGGACCTAACCTTGCCATTA+TGG | + | chr8_3:9442405-9442424 | None:intergenic | 45.0% | |
| TCAAGAAAGGTCCTTCCCTT+CGG | + | chr8_3:9442549-9442568 | None:intergenic | 45.0% | |
| ACTGTGGAACCCTCTTCTCA+AGG | - | chr8_3:9440783-9440802 | Msa1275480:intron | 50.0% | |
| !! | ATCCAATGTCTCTGGGACAC+CGG | - | chr8_3:9440960-9440979 | Msa1275480:intron | 50.0% |
| ! | GACTCCTTAATCGGTGTTCC+GGG | - | chr8_3:9441083-9441102 | Msa1275480:intron | 50.0% |
| ! | ACTCCTTAATCGGTGTTCCG+GGG | - | chr8_3:9441084-9441103 | Msa1275480:intron | 50.0% |
| ACATTATGTGGGCCAAGCCA+AGG | + | chr8_3:9441721-9441740 | None:intergenic | 50.0% | |
| GTAGCTGACATGTGAGCTGA+AGG | + | chr8_3:9441880-9441899 | None:intergenic | 50.0% | |
| AGAAACCTCCCTGGTAACCC+AGG | - | chr8_3:9440294-9440313 | Msa1275480:CDS | 55.0% | |
| ACAAACCTGGGTTACCAGGG+AGG | + | chr8_3:9440302-9440321 | None:intergenic | 55.0% | |
| AACCGGTGTCCCAGAGACAT+TGG | + | chr8_3:9440965-9440984 | None:intergenic | 55.0% | |
| ! | TGTCCCCGGAACACCGATTA+AGG | + | chr8_3:9441090-9441109 | None:intergenic | 55.0% |
| TTATGTGGGCCAAGCCAAGG+TGG | + | chr8_3:9441718-9441737 | None:intergenic | 55.0% | |
| ! | TAAGAAGGGAGTGTGGGTCC+AGG | + | chr8_3:9441847-9441866 | None:intergenic | 55.0% |
| ACAACCACCAATGACGGTGG+CGG | - | chr8_3:9442243-9442262 | Msa1275480:five_prime_UTR | 55.0% | |
| ! | ACCACCAATGACGGTGGCGG+CGG | - | chr8_3:9442246-9442265 | Msa1275480:five_prime_UTR | 65.0% |
| GGCGGCGGTGGAGGAAATGA+AGG | - | chr8_3:9442267-9442286 | Msa1275480:five_prime_UTR | 65.0% | |
| ! | ACCAATGACGGTGGCGGCGG+CGG | - | chr8_3:9442249-9442268 | Msa1275480:five_prime_UTR | 70.0% |
| GCCGCCGCCACCGTCATTGG+TGG | + | chr8_3:9442250-9442269 | None:intergenic | 75.0% | |
| ! | AATGACGGTGGCGGCGGCGG+CGG | - | chr8_3:9442252-9442271 | Msa1275480:five_prime_UTR | 75.0% |
| ! | GCCGCCGCCGCCACCGTCAT+TGG | + | chr8_3:9442253-9442272 | None:intergenic | 80.0% |
| !! | GACGGTGGCGGCGGCGGCGG+TGG | - | chr8_3:9442255-9442274 | Msa1275480:five_prime_UTR | 90.0% |
| !! | GGTGGCGGCGGCGGCGGTGG+AGG | - | chr8_3:9442258-9442277 | Msa1275480:five_prime_UTR | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 9439571 | 9442575 | 9439571 | ID=Msa1275480;Name=Msa1275480 |
| chr8_3 | mRNA | 9439571 | 9442575 | 9439571 | ID=Msa1275480-mRNA-1;Parent=Msa1275480;Name=Msa1275480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=537|1|1|1|1|1|3|168|511 |
| chr8_3 | exon | 9439571 | 9440669 | 9439571 | ID=Msa1275480-mRNA-1:exon:3967;Parent=Msa1275480-mRNA-1 |
| chr8_3 | exon | 9441342 | 9441738 | 9441342 | ID=Msa1275480-mRNA-1:exon:3966;Parent=Msa1275480-mRNA-1 |
| chr8_3 | exon | 9441831 | 9442575 | 9441831 | ID=Msa1275480-mRNA-1:exon:3965;Parent=Msa1275480-mRNA-1 |
| chr8_3 | five_prime_UTR | 9442039 | 9442575 | 9442039 | ID=Msa1275480-mRNA-1:five_prime_utr;Parent=Msa1275480-mRNA-1 |
| chr8_3 | CDS | 9441831 | 9442038 | 9441831 | ID=Msa1275480-mRNA-1:cds;Parent=Msa1275480-mRNA-1 |
| chr8_3 | CDS | 9441342 | 9441738 | 9441342 | ID=Msa1275480-mRNA-1:cds;Parent=Msa1275480-mRNA-1 |
| chr8_3 | CDS | 9439739 | 9440669 | 9439739 | ID=Msa1275480-mRNA-1:cds;Parent=Msa1275480-mRNA-1 |
| chr8_3 | three_prime_UTR | 9439571 | 9439738 | 9439571 | ID=Msa1275480-mRNA-1:three_prime_utr;Parent=Msa1275480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
