AlfalfaGEDB | Msa1281180

M. sativa cultivar zhongmu-4 / Msa1281180

KEGG: K12734
GO: GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00160.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281180	XP_013445004.1	99.375	160	1	0	1	160	1	160	1.90e-114	331

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281180	sp\|Q9LPC7\|CP18A_ARATH	91.250	160	14	0	1	160	1	160	1.54e-110	313

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281180	G7ZW00	99.375	160	1	0	1	160	1	160	9.07e-115	331

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004920	Msa1281180	0.811865	5.654176e-51	-8.615850e-47
Msa0012040	Msa1281180	0.807088	5.995559e-50	-8.615850e-47
Msa0030430	Msa1281180	0.801481	8.823235e-49	-8.615850e-47
Msa0057140	Msa1281180	0.802210	6.250164e-49	-8.615850e-47
Msa0076000	Msa1281180	0.805326	1.408784e-49	-8.615850e-47
Msa0638280	Msa1281180	0.803946	2.734959e-49	-8.615850e-47
Msa0638320	Msa1281180	0.800288	1.546091e-48	-8.615850e-47
Msa0677270	Msa1281180	0.808990	2.360428e-50	-8.615850e-47
Msa0697670	Msa1281180	0.807018	6.205209e-50	-8.615850e-47
Msa0709500	Msa1281180	0.803252	3.808690e-49	-8.615850e-47
Msa0724830	Msa1281180	0.812761	3.602262e-51	-8.615850e-47
Msa0750350	Msa1281180	0.802532	5.364101e-49	-8.615850e-47
Msa0750430	Msa1281180	0.810142	1.335392e-50	-8.615850e-47
Msa0790850	Msa1281180	0.802901	4.502436e-49	-8.615850e-47
Msa0184960	Msa1281180	0.818391	2.009148e-52	-8.615850e-47
Msa0188680	Msa1281180	-0.801699	7.960942e-49	-8.615850e-47
Msa0191050	Msa1281180	0.809849	1.544074e-50	-8.615850e-47
Msa0233350	Msa1281180	0.817271	3.595763e-52	-8.615850e-47
Msa1251730	Msa1281180	0.806502	7.972391e-50	-8.615850e-47
Msa1254510	Msa1281180	0.804892	1.736825e-49	-8.615850e-47
Msa1281180	Msa1284220	0.829300	5.560617e-55	-8.615850e-47
Msa1281180	Msa1316830	0.800760	1.238869e-48	-8.615850e-47
Msa1281180	Msa1320740	0.804274	2.336505e-49	-8.615850e-47
Msa1281180	Msa1328700	0.816219	6.189295e-52	-8.615850e-47
Msa1281180	Msa1403580	-0.801010	1.101650e-48	-8.615850e-47
Msa1281180	Msa1404730	0.805340	1.399564e-49	-8.615850e-47
Msa1281180	Msa1425010	0.806186	9.297239e-50	-8.615850e-47
Msa0372660	Msa1281180	0.819891	9.150469e-53	-8.615850e-47
Msa0372670	Msa1281180	0.800766	1.235777e-48	-8.615850e-47
Msa0398730	Msa1281180	0.808926	2.435964e-50	-8.615850e-47
Msa0436050	Msa1281180	0.801934	7.122082e-49	-8.615850e-47
Msa1040890	Msa1281180	0.810819	9.537129e-51	-8.615850e-47
Msa1082500	Msa1281180	0.800854	1.185216e-48	-8.615850e-47
Msa1083210	Msa1281180	0.809685	1.674471e-50	-8.615850e-47
Msa1100720	Msa1281180	0.802683	4.994299e-49	-8.615850e-47
Msa0270220	Msa1281180	-0.805344	1.397021e-49	-8.615850e-47
Msa0307830	Msa1281180	-0.802621	5.143981e-49	-8.615850e-47
Msa0342360	Msa1281180	0.820489	6.676828e-53	-8.615850e-47
Msa1111630	Msa1281180	0.803097	4.101703e-49	-8.615850e-47
Msa1125760	Msa1281180	0.826940	2.058974e-54	-8.615850e-47
Msa1171360	Msa1281180	0.803872	2.833115e-49	-8.615850e-47
Msa1187840	Msa1281180	0.811235	7.747383e-51	-8.615850e-47
Msa1199560	Msa1281180	0.818838	1.590681e-52	-8.615850e-47
Msa1214270	Msa1281180	0.808895	2.472961e-50	-8.615850e-47
Msa0483860	Msa1281180	0.810529	1.101890e-50	-8.615850e-47
Msa0488400	Msa1281180	0.806730	7.136185e-50	-8.615850e-47
Msa0517330	Msa1281180	0.811393	7.161654e-51	-8.615850e-47
Msa0577220	Msa1281180	0.802183	6.330826e-49	-8.615850e-47
Msa0869120	Msa1281180	0.816111	6.544526e-52	-8.615850e-47
Msa0979010	Msa1281180	0.820163	7.931566e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281180	MtrunA17_Chr8g0351571	99.375	160	1	0	1	160	1	160	1.75e-118	331
Msa1281180	MtrunA17_Chr5g0401141	56.774	155	67	0	3	157	347	501	9.73e-58	189
Msa1281180	MtrunA17_Chr7g0266721	50.993	151	74	0	3	153	12	162	1.71e-54	169
Msa1281180	MtrunA17_Chr2g0321111	50.658	152	75	0	2	153	463	614	5.45e-51	171
Msa1281180	MtrunA17_Chr8g0374621	50.336	149	61	3	10	146	18	165	6.63e-41	140
Msa1281180	MtrunA17_Chr4g0045321	50.331	151	62	4	10	148	18	167	4.68e-40	138
Msa1281180	MtrunA17_Chr7g0260441	52.349	149	57	5	12	148	23	169	1.59e-37	135
Msa1281180	MtrunA17_Chr1g0213971	47.586	145	71	4	9	149	93	236	8.30e-37	127
Msa1281180	MtrunA17_Chr7g0274841	52.206	136	53	3	10	134	18	152	1.02e-36	124
Msa1281180	MtrunA17_Chr7g0270991	51.034	145	66	4	8	148	108	251	8.06e-36	124
Msa1281180	MtrunA17_Chr4g0038431	46.835	158	66	6	10	152	18	172	2.50e-34	118
Msa1281180	MtrunA17_Chr1g0193711	51.034	145	63	5	10	148	99	241	6.23e-34	119
Msa1281180	MtrunA17_Chr6g0484281	39.157	166	93	2	1	158	1	166	3.68e-33	123
Msa1281180	MtrunA17_Chr8g0353571	48.951	143	62	4	10	142	32	173	4.04e-33	115
Msa1281180	MtrunA17_Chr3g0145501	47.917	144	59	5	9	139	25	165	7.79e-33	115
Msa1281180	MtrunA17_Chr2g0288371	44.654	159	84	3	3	158	15	172	3.18e-32	119
Msa1281180	MtrunA17_Chr3g0113441	48.252	143	62	4	8	139	76	217	3.73e-32	114
Msa1281180	MtrunA17_Chr8g0357591	38.554	166	94	2	1	158	1	166	6.33e-32	119
Msa1281180	MtrunA17_Chr3g0104751	48.529	136	58	4	8	132	46	180	2.80e-31	111
Msa1281180	MtrunA17_Chr4g0037281	47.154	123	53	4	21	132	72	193	1.48e-26	100
Msa1281180	MtrunA17_Chr3g0138061	40.000	130	65	3	15	132	29	157	8.92e-22	90.9
Msa1281180	MtrunA17_Chr1g0149061	39.231	130	65	4	15	132	26	153	9.72e-20	85.1
Msa1281180	MtrunA17_Chr1g0199071	33.775	151	92	3	4	153	83	226	6.60e-19	80.1
Msa1281180	MtrunA17_Chr1g0163031	34.247	146	85	4	4	146	82	219	1.26e-18	79.3
Msa1281180	MtrunA17_Chr5g0416441	32.192	146	79	5	3	136	28	165	7.13e-13	64.3
Msa1281180	MtrunA17_Chr3g0122871	43.750	64	36	0	79	142	56	119	5.83e-12	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281180	AT1G01940.1	91.250	160	14	0	1	160	1	160	1.56e-111	313
Msa1281180	AT2G36130.1	52.318	151	72	0	3	153	12	162	6.03e-55	171
Msa1281180	AT5G67530.1	53.548	155	72	0	3	157	346	500	1.46e-54	181
Msa1281180	AT3G44600.1	51.316	152	74	0	2	153	477	628	1.57e-50	171
Msa1281180	AT3G63400.2	50.336	149	60	5	12	148	23	169	1.90e-38	135
Msa1281180	AT5G13120.2	50.355	141	65	4	10	146	103	242	4.36e-38	130
Msa1281180	AT5G13120.1	50.355	141	65	4	10	146	107	246	4.81e-38	130
Msa1281180	AT4G33060.1	47.917	144	71	3	3	143	15	157	6.61e-38	135
Msa1281180	AT3G63400.3	49.664	149	61	4	12	148	23	169	4.26e-37	134
Msa1281180	AT3G63400.4	49.664	149	61	4	12	148	23	169	4.26e-37	134
Msa1281180	AT3G63400.1	49.664	149	61	4	12	148	23	169	4.26e-37	134
Msa1281180	AT4G34870.1	50.000	146	57	4	7	139	15	157	8.64e-37	125
Msa1281180	AT3G62030.3	52.083	144	62	4	10	148	108	249	2.04e-35	124
Msa1281180	AT3G56070.1	45.283	159	74	4	10	157	18	174	2.16e-35	121
Msa1281180	AT3G56070.2	45.283	159	74	4	10	157	18	174	2.16e-35	121
Msa1281180	AT3G62030.1	52.083	144	62	4	10	148	109	250	2.26e-35	124
Msa1281180	AT3G62030.2	52.083	144	62	4	10	148	162	303	7.81e-35	124
Msa1281180	AT2G21130.1	50.355	141	58	4	10	139	19	158	1.44e-34	119
Msa1281180	AT2G15790.1	51.852	135	52	3	10	132	18	151	4.94e-34	122
Msa1281180	AT4G38740.1	48.227	141	61	3	10	139	18	157	5.50e-34	117
Msa1281180	AT3G55920.1	48.936	141	60	3	10	139	73	212	2.88e-33	117
Msa1281180	AT1G53720.2	37.952	166	95	2	1	158	1	166	9.26e-33	119
Msa1281180	AT1G53720.1	37.952	166	95	2	1	158	1	166	4.32e-32	119
Msa1281180	AT2G16600.1	46.853	143	60	4	10	139	19	158	1.94e-31	111
Msa1281180	AT2G29960.1	49.254	134	56	4	10	132	46	178	2.46e-31	112
Msa1281180	AT2G29960.3	49.254	134	56	4	10	132	46	178	2.46e-31	112
Msa1281180	AT5G58710.1	47.015	134	59	3	10	132	49	181	5.54e-29	105
Msa1281180	AT2G38730.1	46.528	144	64	5	10	142	46	187	1.32e-28	105
Msa1281180	AT4G34960.1	45.736	129	58	4	9	126	60	187	8.45e-26	98.2
Msa1281180	AT2G16600.2	43.939	132	58	3	10	139	19	136	2.27e-25	95.1
Msa1281180	AT2G29960.2	44.776	134	52	5	10	132	46	168	1.44e-24	94.4
Msa1281180	AT4G34960.2	47.273	110	46	4	9	107	60	168	2.59e-21	85.5
Msa1281180	AT4G32420.1	35.811	148	81	5	15	150	26	171	1.52e-17	79.3
Msa1281180	AT4G32420.5	35.811	148	81	5	15	150	26	171	1.52e-17	79.3
Msa1281180	AT4G32420.3	35.811	148	81	5	15	150	26	171	1.52e-17	79.3
Msa1281180	AT4G32420.6	35.811	148	81	5	15	150	26	171	1.52e-17	79.3
Msa1281180	AT2G47320.1	32.667	150	97	2	4	153	81	226	2.16e-17	76.3
Msa1281180	AT4G32420.4	38.168	131	68	4	15	133	26	155	7.65e-17	77.0
Msa1281180	AT1G53780.2	39.326	89	53	1	71	158	4	92	3.79e-14	69.3
Msa1281180	AT3G66654.4	28.188	149	106	1	5	153	85	232	5.61e-12	62.0
Msa1281180	AT3G66654.2	28.188	149	106	1	5	153	85	232	5.61e-12	62.0
Msa1281180	AT3G66654.3	28.188	149	106	1	5	153	85	232	5.61e-12	62.0
Msa1281180	AT3G66654.1	28.188	149	106	1	5	153	85	232	5.61e-12	62.0
Msa1281180	AT3G66654.5	28.188	149	106	1	5	153	85	232	5.61e-12	62.0
Msa1281180	AT1G26940.2	30.986	142	90	4	1	136	1	140	9.86e-12	60.8
Msa1281180	AT1G26940.1	31.429	140	88	4	3	136	34	171	1.67e-11	60.5

Find 57 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATATTTCACCGCAATATTAA+AGG	0.172007	8_3:-20562063	Msa1281180:CDS
AACTGACTTCCATTAGTATT+TGG	0.214721	8_3:+20561431	None:intergenic
AGAAGTTAGATCTATTGTTT+TGG	0.279029	8_3:+20560467	None:intergenic
TGTTTCTGAATAGATTCTTC+TGG	0.317254	8_3:+20562517	None:intergenic
TGACAAACCATCCATTAAAA+AGG	0.321494	8_3:+20560256	None:intergenic
TTTGTTGTGCAGACTCCAAC+AGG	0.336703	8_3:-20560604	Msa1281180:intron
AATGGACTATACACCGTGTT+TGG	0.381087	8_3:-20561377	Msa1281180:CDS
AATCCACTTGCTGGCTAGAC+TGG	0.386836	8_3:-20560526	Msa1281180:exon
TGTGATCGCACAAAATTTGC+CGG	0.398992	8_3:-20560321	Msa1281180:three_prime_UTR
GCAAAACAACCACATTTGAA+TGG	0.399385	8_3:-20561395	Msa1281180:CDS
ATGCATTCTAATCCACTTGC+TGG	0.402070	8_3:-20560535	Msa1281180:CDS
ATTAAAGGCTTTATGATTCA+AGG	0.403390	8_3:-20562048	Msa1281180:CDS
GTGTTTGGAAGAGTAATTCA+TGG	0.424305	8_3:-20561362	Msa1281180:CDS
GTTAGAATCATCAAGTTCAA+TGG	0.429178	8_3:-20562458	Msa1281180:intron
TGTGCAAGTGGTTACTTTGA+TGG	0.436733	8_3:-20562090	Msa1281180:CDS
GAAGGAGAATTCTTATATGC+TGG	0.439410	8_3:-20560434	Msa1281180:three_prime_UTR
ATTTGAAGTTCTTGATCTCA+TGG	0.441468	8_3:-20561339	Msa1281180:CDS
GTGCAGACTCCAACAGGGGC+AGG	0.442734	8_3:-20560598	Msa1281180:intron
GTGCAAGTGGTTACTTTGAT+GGG	0.447542	8_3:-20562089	Msa1281180:CDS
CTATTGTTTAATTCATCGTT+GGG	0.449568	8_3:-20562494	Msa1281180:five_prime_UTR
GATCCAACTGGTACCGGCAA+AGG	0.454778	8_3:-20562021	Msa1281180:CDS
ATCCAACTGGTACCGGCAAA+GGG	0.456047	8_3:-20562020	Msa1281180:CDS
ACTATTGTTTAATTCATCGT+TGG	0.462535	8_3:-20562495	Msa1281180:five_prime_UTR
AGTTCTTGATCTCATGGAAA+AGG	0.470855	8_3:-20561333	Msa1281180:intron
AATTCATCGTTGGGATTTAG+CGG	0.475348	8_3:-20562485	Msa1281180:five_prime_UTR
CGAGATAAGAGAATCTTTGA+AGG	0.476005	8_3:-20561965	Msa1281180:intron
AACAGTGGTCCAAATACTAA+TGG	0.476528	8_3:-20561440	Msa1281180:CDS
GGTCGATCCCCTGCCCCTGT+TGG	0.500602	8_3:+20560589	None:intergenic
ATCGACCACTTGCAGAGATA+AGG	0.511883	8_3:-20560573	Msa1281180:CDS
GGTGGAGATCCAACTGGTAC+CGG	0.512107	8_3:-20562027	Msa1281180:CDS
GCAGACTCCAACAGGGGCAG+GGG	0.516609	8_3:-20560596	Msa1281180:intron
TTGTCTTTGTTCTTGTGTTG+CGG	0.519024	8_3:-20560283	Msa1281180:three_prime_UTR
TGCAGACTCCAACAGGGGCA+GGG	0.545321	8_3:-20560597	Msa1281180:intron
TGCAAGGGGAATATTGTCAA+TGG	0.546666	8_3:-20561465	Msa1281180:CDS
ATTCAAGGTGGAGATCCAAC+TGG	0.551039	8_3:-20562033	Msa1281180:CDS
CCAACTGGTACCGGCAAAGG+GGG	0.557700	8_3:-20562018	Msa1281180:CDS
AGACCAGTCTAGCCAGCAAG+TGG	0.559274	8_3:+20560523	None:intergenic
TCATAAAGCCTTTAATATTG+CGG	0.561288	8_3:+20562055	None:intergenic
ACAAAAGAAGTATTGAATGC+CGG	0.561849	8_3:+20560302	None:intergenic
TCCAACTGGTACCGGCAAAG+GGG	0.565649	8_3:-20562019	Msa1281180:CDS
TGTTGTGCAGACTCCAACAG+GGG	0.570681	8_3:-20560602	Msa1281180:intron
GTGTGTTCCAGCATAATGCA+AGG	0.572411	8_3:-20561481	Msa1281180:intron
TGTGTTCCAGCATAATGCAA+GGG	0.592664	8_3:-20561480	Msa1281180:intron
TAACTTCTAAGTAGAGGTGA+AGG	0.593566	8_3:-20560452	Msa1281180:three_prime_UTR
TAGATCTAACTTCTAAGTAG+AGG	0.609087	8_3:-20560458	Msa1281180:three_prime_UTR
TTTCGCATTTGATGTCACCT+AGG	0.612378	8_3:+20562335	None:intergenic
ATGAATTACTCTTCCAAACA+CGG	0.615509	8_3:+20561364	None:intergenic
GTTACTCTCCACACAAACCT+AGG	0.615549	8_3:-20562352	Msa1281180:CDS
TGATGTCACCTAGGTTTGTG+TGG	0.623331	8_3:+20562344	None:intergenic
TTGAGCCTTATCTCTGCAAG+TGG	0.632274	8_3:+20560568	None:intergenic
GTGTATAGTCCATTCAAATG+TGG	0.635991	8_3:+20561386	None:intergenic
TTGTTGTGCAGACTCCAACA+GGG	0.638282	8_3:-20560603	Msa1281180:intron
CAACTGGTACCGGCAAAGGG+GGG	0.655196	8_3:-20562017	Msa1281180:CDS
GTGTTCCAGCATAATGCAAG+GGG	0.668599	8_3:-20561479	Msa1281180:intron
AAAGGCTTTATGATTCAAGG+TGG	0.669284	8_3:-20562045	Msa1281180:CDS
ATATTGTCAATGGCTAACAG+TGG	0.731092	8_3:-20561455	Msa1281180:CDS
GAATGAAGTACGTACCTCGG+AGG	0.745275	8_3:+20562288	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTGTTTATCAAAAAATTT+TGG	-	chr8_3:20561512-20561531	Msa1281180:intron	10.0%
!!	TTATAAAAATATTCATTCAA+TGG	+	chr8_3:20561808-20561827	None:intergenic	10.0%
!!!	ATTTGTTTATCAAAAAATTT+TGG	-	chr8_3:20561512-20561531	Msa1281180:intron	10.0%
!!	TTATAAAAATATTCATTCAA+TGG	+	chr8_3:20561808-20561827	None:intergenic	10.0%
!!	TATATTTAAATATCCTATTG+TGG	-	chr8_3:20561169-20561188	Msa1281180:intron	15.0%
!!!	CAATCTTTTAAAAATTGAAT+CGG	+	chr8_3:20561687-20561706	None:intergenic	15.0%
!!!	TTCATACTTTTTTTTTTTTG+TGG	+	chr8_3:20561864-20561883	None:intergenic	15.0%
!!!	CAAAAAAAAAAAAGTATGAA+TGG	-	chr8_3:20561864-20561883	Msa1281180:intron	15.0%
!!	AAATAGAATGTAATCATAAT+AGG	+	chr8_3:20561988-20562007	None:intergenic	15.0%
!!	TATATTTAAATATCCTATTG+TGG	-	chr8_3:20561169-20561188	Msa1281180:intron	15.0%
!!!	CAATCTTTTAAAAATTGAAT+CGG	+	chr8_3:20561687-20561706	None:intergenic	15.0%
!!!	TTCATACTTTTTTTTTTTTG+TGG	+	chr8_3:20561864-20561883	None:intergenic	15.0%
!!!	CAAAAAAAAAAAAGTATGAA+TGG	-	chr8_3:20561864-20561883	Msa1281180:intron	15.0%
!!	AAATAGAATGTAATCATAAT+AGG	+	chr8_3:20561988-20562007	None:intergenic	15.0%
!!	TTTGATAAAACAAACGAAAT+AGG	-	chr8_3:20560980-20560999	Msa1281180:intron	20.0%
!!!	TTTTCTTCATAAGATTTTTG+TGG	-	chr8_3:20561276-20561295	Msa1281180:intron	20.0%
!!	TTTGATAAAACAAACGAAAT+AGG	-	chr8_3:20560980-20560999	Msa1281180:intron	20.0%
!!!	TTTTCTTCATAAGATTTTTG+TGG	-	chr8_3:20561276-20561295	Msa1281180:intron	20.0%
!	ACTATTGTTTAATTCATCGT+TGG	-	chr8_3:20560306-20560325	Msa1281180:three_prime_UTR	25.0%
!	CTATTGTTTAATTCATCGTT+GGG	-	chr8_3:20560307-20560326	Msa1281180:three_prime_UTR	25.0%
!!!	TTCCTCAATTTTAACAGATT+CGG	-	chr8_3:20560549-20560568	Msa1281180:CDS	25.0%
!	ATATTTCACCGCAATATTAA+AGG	-	chr8_3:20560738-20560757	Msa1281180:intron	25.0%
!	TCATAAAGCCTTTAATATTG+CGG	+	chr8_3:20560749-20560768	None:intergenic	25.0%
!!	ATTAAAGGCTTTATGATTCA+AGG	-	chr8_3:20560753-20560772	Msa1281180:intron	25.0%
!	AGAAATTTACGAAGTATATG+CGG	-	chr8_3:20561007-20561026	Msa1281180:intron	25.0%
!	TAATTACATCACTCCAATAT+AGG	-	chr8_3:20561061-20561080	Msa1281180:intron	25.0%
!!!	TATCCTATTGTGGTTATTTT+TGG	-	chr8_3:20561179-20561198	Msa1281180:intron	25.0%
!	AAACCAAAAATAACCACAAT+AGG	+	chr8_3:20561185-20561204	None:intergenic	25.0%
!!!	TTGTGGTTATTTTTGGTTTA+TGG	-	chr8_3:20561186-20561205	Msa1281180:intron	25.0%
!!!	AGTTTTTAAAACATTGGCTA+TGG	+	chr8_3:20561538-20561557	None:intergenic	25.0%
!!!	CTGTTCAGTTTTTAAAACAT+TGG	+	chr8_3:20561544-20561563	None:intergenic	25.0%
!	AAATAACCAAACTGAAGTAA+AGG	+	chr8_3:20561581-20561600	None:intergenic	25.0%
!	TTTAAAAATTGAATCGGACA+TGG	+	chr8_3:20561681-20561700	None:intergenic	25.0%
!!	AAAAGATTGATTGATGATCA+AGG	-	chr8_3:20561698-20561717	Msa1281180:intron	25.0%
!	AATAGTTGAATGTGATCATT+AGG	-	chr8_3:20561762-20561781	Msa1281180:intron	25.0%
!	AAGTATGAATGGAGAAAAAT+TGG	-	chr8_3:20561875-20561894	Msa1281180:intron	25.0%
!	AGTATGAATGGAGAAAAATT+GGG	-	chr8_3:20561876-20561895	Msa1281180:intron	25.0%
!	GATCTATTATTTCGATAGTT+GGG	+	chr8_3:20561966-20561985	None:intergenic	25.0%
!!	GAAGTTAGATCTATTGTTTT+GGG	+	chr8_3:20562336-20562355	None:intergenic	25.0%
!!	AGAAGTTAGATCTATTGTTT+TGG	+	chr8_3:20562337-20562356	None:intergenic	25.0%
!	ACTATTGTTTAATTCATCGT+TGG	-	chr8_3:20560306-20560325	Msa1281180:three_prime_UTR	25.0%
!	CTATTGTTTAATTCATCGTT+GGG	-	chr8_3:20560307-20560326	Msa1281180:three_prime_UTR	25.0%
!!!	TTCCTCAATTTTAACAGATT+CGG	-	chr8_3:20560549-20560568	Msa1281180:CDS	25.0%
!	ATATTTCACCGCAATATTAA+AGG	-	chr8_3:20560738-20560757	Msa1281180:intron	25.0%
!	TCATAAAGCCTTTAATATTG+CGG	+	chr8_3:20560749-20560768	None:intergenic	25.0%
!!	ATTAAAGGCTTTATGATTCA+AGG	-	chr8_3:20560753-20560772	Msa1281180:intron	25.0%
!	AGAAATTTACGAAGTATATG+CGG	-	chr8_3:20561007-20561026	Msa1281180:intron	25.0%
!	TAATTACATCACTCCAATAT+AGG	-	chr8_3:20561061-20561080	Msa1281180:intron	25.0%
!!!	TATCCTATTGTGGTTATTTT+TGG	-	chr8_3:20561179-20561198	Msa1281180:intron	25.0%
!	AAACCAAAAATAACCACAAT+AGG	+	chr8_3:20561185-20561204	None:intergenic	25.0%
!!!	TTGTGGTTATTTTTGGTTTA+TGG	-	chr8_3:20561186-20561205	Msa1281180:intron	25.0%
!!!	AGTTTTTAAAACATTGGCTA+TGG	+	chr8_3:20561538-20561557	None:intergenic	25.0%
!!!	CTGTTCAGTTTTTAAAACAT+TGG	+	chr8_3:20561544-20561563	None:intergenic	25.0%
!	AAATAACCAAACTGAAGTAA+AGG	+	chr8_3:20561581-20561600	None:intergenic	25.0%
!	TTTAAAAATTGAATCGGACA+TGG	+	chr8_3:20561681-20561700	None:intergenic	25.0%
!!	AAAAGATTGATTGATGATCA+AGG	-	chr8_3:20561698-20561717	Msa1281180:intron	25.0%
!	AATAGTTGAATGTGATCATT+AGG	-	chr8_3:20561762-20561781	Msa1281180:intron	25.0%
!	AAGTATGAATGGAGAAAAAT+TGG	-	chr8_3:20561875-20561894	Msa1281180:intron	25.0%
!	AGTATGAATGGAGAAAAATT+GGG	-	chr8_3:20561876-20561895	Msa1281180:intron	25.0%
!	GATCTATTATTTCGATAGTT+GGG	+	chr8_3:20561966-20561985	None:intergenic	25.0%
!!	GAAGTTAGATCTATTGTTTT+GGG	+	chr8_3:20562336-20562355	None:intergenic	25.0%
!!	AGAAGTTAGATCTATTGTTT+TGG	+	chr8_3:20562337-20562356	None:intergenic	25.0%
!	TGTTTCTGAATAGATTCTTC+TGG	+	chr8_3:20560287-20560306	None:intergenic	30.0%
	GTTAGAATCATCAAGTTCAA+TGG	-	chr8_3:20560343-20560362	Msa1281180:three_prime_UTR	30.0%
	TCTTCTATTGTTTGTTCAGT+CGG	-	chr8_3:20560427-20560446	Msa1281180:three_prime_UTR	30.0%
!!	TCCTCAATTTTAACAGATTC+GGG	-	chr8_3:20560550-20560569	Msa1281180:CDS	30.0%
	TCGATTGAAACAACAGAATA+GGG	+	chr8_3:20560614-20560633	None:intergenic	30.0%
	ATCGATTGAAACAACAGAAT+AGG	+	chr8_3:20560615-20560634	None:intergenic	30.0%
	TTAACAAATACTACACACAC+AGG	+	chr8_3:20560918-20560937	None:intergenic	30.0%
	GTATAACAGATTGCCTATAT+TGG	+	chr8_3:20561077-20561096	None:intergenic	30.0%
!	TAAGTTCCGACACTTTTATT+GGG	-	chr8_3:20561098-20561117	Msa1281180:intron	30.0%
!	CTTTAACCCAATAAAAGTGT+CGG	+	chr8_3:20561107-20561126	None:intergenic	30.0%
!!!	GTTATTTTTGGTTTATGGTG+TGG	-	chr8_3:20561191-20561210	Msa1281180:intron	30.0%
!	AGATTTTTGTGGTAGCTAAT+TGG	-	chr8_3:20561287-20561306	Msa1281180:intron	30.0%
!	AACTGACTTCCATTAGTATT+TGG	+	chr8_3:20561373-20561392	None:intergenic	30.0%
	ATGAATTACTCTTCCAAACA+CGG	+	chr8_3:20561440-20561459	None:intergenic	30.0%
!	ATTTGAAGTTCTTGATCTCA+TGG	-	chr8_3:20561462-20561481	Msa1281180:CDS	30.0%
!!!	CTTCAGTTTGGTTATTTTTG+TGG	-	chr8_3:20561584-20561603	Msa1281180:intron	30.0%
!	GTTTGATCACAATTTTGTCT+CGG	-	chr8_3:20561606-20561625	Msa1281180:intron	30.0%
	GTAGTTAAAACATGACTCAA+AGG	-	chr8_3:20561644-20561663	Msa1281180:intron	30.0%
	TTGAATGTGATCATTAGGAA+TGG	-	chr8_3:20561767-20561786	Msa1281180:intron	30.0%
	GGATCTATTATTTCGATAGT+TGG	+	chr8_3:20561967-20561986	None:intergenic	30.0%
!	TTGATTTGACAACACAATGA+AGG	-	chr8_3:20562038-20562057	Msa1281180:CDS	30.0%
	ATGTTTAGTATTTGAGTGCA+TGG	+	chr8_3:20562148-20562167	None:intergenic	30.0%
	TAGATCTAACTTCTAAGTAG+AGG	-	chr8_3:20562343-20562362	Msa1281180:CDS	30.0%
!!	ACAAAAGAAGTATTGAATGC+CGG	+	chr8_3:20562502-20562521	None:intergenic	30.0%
	TGACAAACCATCCATTAAAA+AGG	+	chr8_3:20562548-20562567	None:intergenic	30.0%
!	TGTTTCTGAATAGATTCTTC+TGG	+	chr8_3:20560287-20560306	None:intergenic	30.0%
	GTTAGAATCATCAAGTTCAA+TGG	-	chr8_3:20560343-20560362	Msa1281180:three_prime_UTR	30.0%
	TCTTCTATTGTTTGTTCAGT+CGG	-	chr8_3:20560427-20560446	Msa1281180:three_prime_UTR	30.0%
!!	TCCTCAATTTTAACAGATTC+GGG	-	chr8_3:20560550-20560569	Msa1281180:CDS	30.0%
	TCGATTGAAACAACAGAATA+GGG	+	chr8_3:20560614-20560633	None:intergenic	30.0%
	ATCGATTGAAACAACAGAAT+AGG	+	chr8_3:20560615-20560634	None:intergenic	30.0%
	TTAACAAATACTACACACAC+AGG	+	chr8_3:20560918-20560937	None:intergenic	30.0%
	GTATAACAGATTGCCTATAT+TGG	+	chr8_3:20561077-20561096	None:intergenic	30.0%
!	TAAGTTCCGACACTTTTATT+GGG	-	chr8_3:20561098-20561117	Msa1281180:intron	30.0%
!	CTTTAACCCAATAAAAGTGT+CGG	+	chr8_3:20561107-20561126	None:intergenic	30.0%
!!!	GTTATTTTTGGTTTATGGTG+TGG	-	chr8_3:20561191-20561210	Msa1281180:intron	30.0%
!	AGATTTTTGTGGTAGCTAAT+TGG	-	chr8_3:20561287-20561306	Msa1281180:intron	30.0%
!	AACTGACTTCCATTAGTATT+TGG	+	chr8_3:20561373-20561392	None:intergenic	30.0%
	ATGAATTACTCTTCCAAACA+CGG	+	chr8_3:20561440-20561459	None:intergenic	30.0%
!	ATTTGAAGTTCTTGATCTCA+TGG	-	chr8_3:20561462-20561481	Msa1281180:CDS	30.0%
!!!	CTTCAGTTTGGTTATTTTTG+TGG	-	chr8_3:20561584-20561603	Msa1281180:intron	30.0%
!	GTTTGATCACAATTTTGTCT+CGG	-	chr8_3:20561606-20561625	Msa1281180:intron	30.0%
	GTAGTTAAAACATGACTCAA+AGG	-	chr8_3:20561644-20561663	Msa1281180:intron	30.0%
	TTGAATGTGATCATTAGGAA+TGG	-	chr8_3:20561767-20561786	Msa1281180:intron	30.0%
	GGATCTATTATTTCGATAGT+TGG	+	chr8_3:20561967-20561986	None:intergenic	30.0%
!	TTGATTTGACAACACAATGA+AGG	-	chr8_3:20562038-20562057	Msa1281180:CDS	30.0%
	ATGTTTAGTATTTGAGTGCA+TGG	+	chr8_3:20562148-20562167	None:intergenic	30.0%
	TAGATCTAACTTCTAAGTAG+AGG	-	chr8_3:20562343-20562362	Msa1281180:CDS	30.0%
!!	ACAAAAGAAGTATTGAATGC+CGG	+	chr8_3:20562502-20562521	None:intergenic	30.0%
	TGACAAACCATCCATTAAAA+AGG	+	chr8_3:20562548-20562567	None:intergenic	30.0%
	AATTCATCGTTGGGATTTAG+CGG	-	chr8_3:20560316-20560335	Msa1281180:three_prime_UTR	35.0%
	ACCCGAATCTGTTAAAATTG+AGG	+	chr8_3:20560554-20560573	None:intergenic	35.0%
!	AAAGGCTTTATGATTCAAGG+TGG	-	chr8_3:20560756-20560775	Msa1281180:intron	35.0%
	CGAGATAAGAGAATCTTTGA+AGG	-	chr8_3:20560836-20560855	Msa1281180:intron	35.0%
!	TTACCATGACACCATGTTTT+TGG	-	chr8_3:20560880-20560899	Msa1281180:intron	35.0%
!	TACCATGACACCATGTTTTT+GGG	-	chr8_3:20560881-20560900	Msa1281180:intron	35.0%
!!	CAATAAAAGTGTCGGAACTT+AGG	+	chr8_3:20561099-20561118	None:intergenic	35.0%
!	CTAAGTTCCGACACTTTTAT+TGG	-	chr8_3:20561097-20561116	Msa1281180:intron	35.0%
!	CGACACTTTTATTGGGTTAA+AGG	-	chr8_3:20561105-20561124	Msa1281180:intron	35.0%
	TGGACCTTTATAAGCATACT+GGG	-	chr8_3:20561218-20561237	Msa1281180:intron	35.0%
	ATGTCCCAGTATGCTTATAA+AGG	+	chr8_3:20561225-20561244	None:intergenic	35.0%
	ATATTGTCAATGGCTAACAG+TGG	-	chr8_3:20561346-20561365	Msa1281180:CDS	35.0%
	AACAGTGGTCCAAATACTAA+TGG	-	chr8_3:20561361-20561380	Msa1281180:CDS	35.0%
	GCAAAACAACCACATTTGAA+TGG	-	chr8_3:20561406-20561425	Msa1281180:CDS	35.0%
	GTGTATAGTCCATTCAAATG+TGG	+	chr8_3:20561418-20561437	None:intergenic	35.0%
	GTGTTTGGAAGAGTAATTCA+TGG	-	chr8_3:20561439-20561458	Msa1281180:CDS	35.0%
	AGTTCTTGATCTCATGGAAA+AGG	-	chr8_3:20561468-20561487	Msa1281180:CDS	35.0%
	TCAAGGTTAACCAGAATTGT+AGG	-	chr8_3:20561715-20561734	Msa1281180:intron	35.0%
	ATGTGATCATTAGGAATGGA+AGG	-	chr8_3:20561771-20561790	Msa1281180:intron	35.0%
	TGTGATCATTAGGAATGGAA+GGG	-	chr8_3:20561772-20561791	Msa1281180:intron	35.0%
!	TTCACTTGTTCAGTATTGGA+TGG	-	chr8_3:20561902-20561921	Msa1281180:intron	35.0%
	CGAAAACTAATGAATCGTGA+TGG	+	chr8_3:20561936-20561955	None:intergenic	35.0%
	TAACTTCTAAGTAGAGGTGA+AGG	-	chr8_3:20562349-20562368	Msa1281180:CDS	35.0%
	GAAGGAGAATTCTTATATGC+TGG	-	chr8_3:20562367-20562386	Msa1281180:intron	35.0%
	TTGTCTTTGTTCTTGTGTTG+CGG	-	chr8_3:20562518-20562537	Msa1281180:five_prime_UTR	35.0%
	AATTCATCGTTGGGATTTAG+CGG	-	chr8_3:20560316-20560335	Msa1281180:three_prime_UTR	35.0%
	ACCCGAATCTGTTAAAATTG+AGG	+	chr8_3:20560554-20560573	None:intergenic	35.0%
!	AAAGGCTTTATGATTCAAGG+TGG	-	chr8_3:20560756-20560775	Msa1281180:intron	35.0%
	CGAGATAAGAGAATCTTTGA+AGG	-	chr8_3:20560836-20560855	Msa1281180:intron	35.0%
!	TTACCATGACACCATGTTTT+TGG	-	chr8_3:20560880-20560899	Msa1281180:intron	35.0%
!	TACCATGACACCATGTTTTT+GGG	-	chr8_3:20560881-20560900	Msa1281180:intron	35.0%
!!	CAATAAAAGTGTCGGAACTT+AGG	+	chr8_3:20561099-20561118	None:intergenic	35.0%
!	CTAAGTTCCGACACTTTTAT+TGG	-	chr8_3:20561097-20561116	Msa1281180:intron	35.0%
!	CGACACTTTTATTGGGTTAA+AGG	-	chr8_3:20561105-20561124	Msa1281180:intron	35.0%
	TGGACCTTTATAAGCATACT+GGG	-	chr8_3:20561218-20561237	Msa1281180:intron	35.0%
	ATGTCCCAGTATGCTTATAA+AGG	+	chr8_3:20561225-20561244	None:intergenic	35.0%
	ATATTGTCAATGGCTAACAG+TGG	-	chr8_3:20561346-20561365	Msa1281180:CDS	35.0%
	AACAGTGGTCCAAATACTAA+TGG	-	chr8_3:20561361-20561380	Msa1281180:CDS	35.0%
	GCAAAACAACCACATTTGAA+TGG	-	chr8_3:20561406-20561425	Msa1281180:CDS	35.0%
	GTGTATAGTCCATTCAAATG+TGG	+	chr8_3:20561418-20561437	None:intergenic	35.0%
	GTGTTTGGAAGAGTAATTCA+TGG	-	chr8_3:20561439-20561458	Msa1281180:CDS	35.0%
	AGTTCTTGATCTCATGGAAA+AGG	-	chr8_3:20561468-20561487	Msa1281180:CDS	35.0%
	TCAAGGTTAACCAGAATTGT+AGG	-	chr8_3:20561715-20561734	Msa1281180:intron	35.0%
	ATGTGATCATTAGGAATGGA+AGG	-	chr8_3:20561771-20561790	Msa1281180:intron	35.0%
	TGTGATCATTAGGAATGGAA+GGG	-	chr8_3:20561772-20561791	Msa1281180:intron	35.0%
!	TTCACTTGTTCAGTATTGGA+TGG	-	chr8_3:20561902-20561921	Msa1281180:intron	35.0%
	CGAAAACTAATGAATCGTGA+TGG	+	chr8_3:20561936-20561955	None:intergenic	35.0%
	TAACTTCTAAGTAGAGGTGA+AGG	-	chr8_3:20562349-20562368	Msa1281180:CDS	35.0%
	GAAGGAGAATTCTTATATGC+TGG	-	chr8_3:20562367-20562386	Msa1281180:intron	35.0%
	TTGTCTTTGTTCTTGTGTTG+CGG	-	chr8_3:20562518-20562537	Msa1281180:five_prime_UTR	35.0%
	TTTCGCATTTGATGTCACCT+AGG	+	chr8_3:20560469-20560488	None:intergenic	40.0%
	AGTGAATGAAGTACGTACCT+CGG	+	chr8_3:20560519-20560538	None:intergenic	40.0%
	ACAACAGAATAGGGCAAGAA+TGG	+	chr8_3:20560605-20560624	None:intergenic	40.0%
!!	TTTTTAGCGCTTTGTGCAAG+TGG	-	chr8_3:20560699-20560718	Msa1281180:intron	40.0%
!	TGTGCAAGTGGTTACTTTGA+TGG	-	chr8_3:20560711-20560730	Msa1281180:intron	40.0%
!	GTGCAAGTGGTTACTTTGAT+GGG	-	chr8_3:20560712-20560731	Msa1281180:intron	40.0%
!!	ACCATGACACCATGTTTTTG+GGG	-	chr8_3:20560882-20560901	Msa1281180:intron	40.0%
	ACAGCATAACCCCAAAAACA+TGG	+	chr8_3:20560894-20560913	None:intergenic	40.0%
	TGCGGCTCTACTGAAATTTA+TGG	-	chr8_3:20561025-20561044	Msa1281180:intron	40.0%
	CTGGACCTTTATAAGCATAC+TGG	-	chr8_3:20561217-20561236	Msa1281180:intron	40.0%
	GGGACATTTCTTGTGCTTTA+TGG	-	chr8_3:20561238-20561257	Msa1281180:intron	40.0%
	TGTGTTCCAGCATAATGCAA+GGG	-	chr8_3:20561321-20561340	Msa1281180:intron	40.0%
	ATATTCCCCTTGCATTATGC+TGG	+	chr8_3:20561330-20561349	None:intergenic	40.0%
	TGCAAGGGGAATATTGTCAA+TGG	-	chr8_3:20561336-20561355	Msa1281180:CDS	40.0%
!!	AATGGACTATACACCGTGTT+TGG	-	chr8_3:20561424-20561443	Msa1281180:CDS	40.0%
	ACTGAACAGAAACCTTGAAC+TGG	-	chr8_3:20561555-20561574	Msa1281180:intron	40.0%
!!	AACTGGCCTTTACTTCAGTT+TGG	-	chr8_3:20561572-20561591	Msa1281180:intron	40.0%
	AATTGAATCGGACATGGAAC+AGG	+	chr8_3:20561675-20561694	None:intergenic	40.0%
	CCAAACATAGCCTACAATTC+TGG	+	chr8_3:20561728-20561747	None:intergenic	40.0%
	CCAGAATTGTAGGCTATGTT+TGG	-	chr8_3:20561725-20561744	Msa1281180:intron	40.0%
	GCTGTTCACTTGTTCAGTAT+TGG	-	chr8_3:20561898-20561917	Msa1281180:intron	40.0%
	TCATCAATCCAAACATAGCC+TGG	-	chr8_3:20562007-20562026	Msa1281180:CDS	40.0%
	CATCAATCCAAACATAGCCT+GGG	-	chr8_3:20562008-20562027	Msa1281180:CDS	40.0%
	GTGTGTGTGAAATCTAGATG+AGG	+	chr8_3:20562126-20562145	None:intergenic	40.0%
	ATGCATTCTAATCCACTTGC+TGG	-	chr8_3:20562266-20562285	Msa1281180:intron	40.0%
	TGTGATCGCACAAAATTTGC+CGG	-	chr8_3:20562480-20562499	Msa1281180:five_prime_UTR	40.0%
!	GTTGCGGTTCACCTTTTTAA+TGG	-	chr8_3:20562534-20562553	Msa1281180:five_prime_UTR	40.0%
!	CGGTTCACCTTTTTAATGGA+TGG	-	chr8_3:20562538-20562557	Msa1281180:five_prime_UTR	40.0%
	TTTCGCATTTGATGTCACCT+AGG	+	chr8_3:20560469-20560488	None:intergenic	40.0%
	AGTGAATGAAGTACGTACCT+CGG	+	chr8_3:20560519-20560538	None:intergenic	40.0%
	ACAACAGAATAGGGCAAGAA+TGG	+	chr8_3:20560605-20560624	None:intergenic	40.0%
!!	TTTTTAGCGCTTTGTGCAAG+TGG	-	chr8_3:20560699-20560718	Msa1281180:intron	40.0%
!	TGTGCAAGTGGTTACTTTGA+TGG	-	chr8_3:20560711-20560730	Msa1281180:intron	40.0%
!	GTGCAAGTGGTTACTTTGAT+GGG	-	chr8_3:20560712-20560731	Msa1281180:intron	40.0%
!!	ACCATGACACCATGTTTTTG+GGG	-	chr8_3:20560882-20560901	Msa1281180:intron	40.0%
	ACAGCATAACCCCAAAAACA+TGG	+	chr8_3:20560894-20560913	None:intergenic	40.0%
	TGCGGCTCTACTGAAATTTA+TGG	-	chr8_3:20561025-20561044	Msa1281180:intron	40.0%
	CTGGACCTTTATAAGCATAC+TGG	-	chr8_3:20561217-20561236	Msa1281180:intron	40.0%
	GGGACATTTCTTGTGCTTTA+TGG	-	chr8_3:20561238-20561257	Msa1281180:intron	40.0%
	TGTGTTCCAGCATAATGCAA+GGG	-	chr8_3:20561321-20561340	Msa1281180:intron	40.0%
	ATATTCCCCTTGCATTATGC+TGG	+	chr8_3:20561330-20561349	None:intergenic	40.0%
	TGCAAGGGGAATATTGTCAA+TGG	-	chr8_3:20561336-20561355	Msa1281180:CDS	40.0%
!!	AATGGACTATACACCGTGTT+TGG	-	chr8_3:20561424-20561443	Msa1281180:CDS	40.0%
	ACTGAACAGAAACCTTGAAC+TGG	-	chr8_3:20561555-20561574	Msa1281180:intron	40.0%
!!	AACTGGCCTTTACTTCAGTT+TGG	-	chr8_3:20561572-20561591	Msa1281180:intron	40.0%
	AATTGAATCGGACATGGAAC+AGG	+	chr8_3:20561675-20561694	None:intergenic	40.0%
	CCAAACATAGCCTACAATTC+TGG	+	chr8_3:20561728-20561747	None:intergenic	40.0%
	CCAGAATTGTAGGCTATGTT+TGG	-	chr8_3:20561725-20561744	Msa1281180:intron	40.0%
	GCTGTTCACTTGTTCAGTAT+TGG	-	chr8_3:20561898-20561917	Msa1281180:intron	40.0%
	TCATCAATCCAAACATAGCC+TGG	-	chr8_3:20562007-20562026	Msa1281180:CDS	40.0%
	CATCAATCCAAACATAGCCT+GGG	-	chr8_3:20562008-20562027	Msa1281180:CDS	40.0%
	GTGTGTGTGAAATCTAGATG+AGG	+	chr8_3:20562126-20562145	None:intergenic	40.0%
	ATGCATTCTAATCCACTTGC+TGG	-	chr8_3:20562266-20562285	Msa1281180:intron	40.0%
	TGTGATCGCACAAAATTTGC+CGG	-	chr8_3:20562480-20562499	Msa1281180:five_prime_UTR	40.0%
!	GTTGCGGTTCACCTTTTTAA+TGG	-	chr8_3:20562534-20562553	Msa1281180:five_prime_UTR	40.0%
!	CGGTTCACCTTTTTAATGGA+TGG	-	chr8_3:20562538-20562557	Msa1281180:five_prime_UTR	40.0%
	GTTACTCTCCACACAAACCT+AGG	-	chr8_3:20560449-20560468	Msa1281180:three_prime_UTR	45.0%
	TGATGTCACCTAGGTTTGTG+TGG	+	chr8_3:20560460-20560479	None:intergenic	45.0%
!	TACGTACCTCGGAGGTTTTA+GGG	+	chr8_3:20560508-20560527	None:intergenic	45.0%
	ATTCAAGGTGGAGATCCAAC+TGG	-	chr8_3:20560768-20560787	Msa1281180:intron	45.0%
!	CAAAGGGGGGACTAGTATTT+GGG	-	chr8_3:20560797-20560816	Msa1281180:intron	45.0%
!	AAAGGGGGGACTAGTATTTG+GGG	-	chr8_3:20560798-20560817	Msa1281180:intron	45.0%
	TGTCATGGTAATTAGCGCGT+CGG	+	chr8_3:20560871-20560890	None:intergenic	45.0%
!	ACCCCAAAAACATGGTGTCA+TGG	+	chr8_3:20560886-20560905	None:intergenic	45.0%
	TTGGTTTATGGTGTGGACTC+TGG	-	chr8_3:20561198-20561217	Msa1281180:intron	45.0%
	GTGTGTTCCAGCATAATGCA+AGG	-	chr8_3:20561320-20561339	Msa1281180:intron	45.0%
	GTGTTCCAGCATAATGCAAG+GGG	-	chr8_3:20561322-20561341	Msa1281180:intron	45.0%
	CTGAAGTAAAGGCCAGTTCA+AGG	+	chr8_3:20561570-20561589	None:intergenic	45.0%
	GTCAAATCAAGTCAAGTCCC+AGG	+	chr8_3:20562028-20562047	None:intergenic	45.0%
!	TTTGTTGTGCAGACTCCAAC+AGG	-	chr8_3:20562197-20562216	Msa1281180:intron	45.0%
	TTGTTGTGCAGACTCCAACA+GGG	-	chr8_3:20562198-20562217	Msa1281180:intron	45.0%
	ATCGACCACTTGCAGAGATA+AGG	-	chr8_3:20562228-20562247	Msa1281180:intron	45.0%
!	TTGAGCCTTATCTCTGCAAG+TGG	+	chr8_3:20562236-20562255	None:intergenic	45.0%
	GTTACTCTCCACACAAACCT+AGG	-	chr8_3:20560449-20560468	Msa1281180:three_prime_UTR	45.0%
	TGATGTCACCTAGGTTTGTG+TGG	+	chr8_3:20560460-20560479	None:intergenic	45.0%
!	TACGTACCTCGGAGGTTTTA+GGG	+	chr8_3:20560508-20560527	None:intergenic	45.0%
	ATTCAAGGTGGAGATCCAAC+TGG	-	chr8_3:20560768-20560787	Msa1281180:intron	45.0%
!	CAAAGGGGGGACTAGTATTT+GGG	-	chr8_3:20560797-20560816	Msa1281180:intron	45.0%
!	AAAGGGGGGACTAGTATTTG+GGG	-	chr8_3:20560798-20560817	Msa1281180:intron	45.0%
	TGTCATGGTAATTAGCGCGT+CGG	+	chr8_3:20560871-20560890	None:intergenic	45.0%
!	ACCCCAAAAACATGGTGTCA+TGG	+	chr8_3:20560886-20560905	None:intergenic	45.0%
	TTGGTTTATGGTGTGGACTC+TGG	-	chr8_3:20561198-20561217	Msa1281180:intron	45.0%
	GTGTGTTCCAGCATAATGCA+AGG	-	chr8_3:20561320-20561339	Msa1281180:intron	45.0%
	GTGTTCCAGCATAATGCAAG+GGG	-	chr8_3:20561322-20561341	Msa1281180:intron	45.0%
	CTGAAGTAAAGGCCAGTTCA+AGG	+	chr8_3:20561570-20561589	None:intergenic	45.0%
	GTCAAATCAAGTCAAGTCCC+AGG	+	chr8_3:20562028-20562047	None:intergenic	45.0%
!	TTTGTTGTGCAGACTCCAAC+AGG	-	chr8_3:20562197-20562216	Msa1281180:intron	45.0%
	TTGTTGTGCAGACTCCAACA+GGG	-	chr8_3:20562198-20562217	Msa1281180:intron	45.0%
	ATCGACCACTTGCAGAGATA+AGG	-	chr8_3:20562228-20562247	Msa1281180:intron	45.0%
!	TTGAGCCTTATCTCTGCAAG+TGG	+	chr8_3:20562236-20562255	None:intergenic	45.0%
!	GTACGTACCTCGGAGGTTTT+AGG	+	chr8_3:20560509-20560528	None:intergenic	50.0%
	GAATGAAGTACGTACCTCGG+AGG	+	chr8_3:20560516-20560535	None:intergenic	50.0%
!!	ATCCAACTGGTACCGGCAAA+GGG	-	chr8_3:20560781-20560800	Msa1281180:intron	50.0%
	AATACTAGTCCCCCCTTTGC+CGG	+	chr8_3:20560796-20560815	None:intergenic	50.0%
!	GCAAAGGGGGGACTAGTATT+TGG	-	chr8_3:20560796-20560815	Msa1281180:intron	50.0%
	GTCAAGTCCCAGGCTATGTT+TGG	+	chr8_3:20562018-20562037	None:intergenic	50.0%
	TGTTGTGCAGACTCCAACAG+GGG	-	chr8_3:20562199-20562218	Msa1281180:intron	50.0%
!	AATCCACTTGCTGGCTAGAC+TGG	-	chr8_3:20562275-20562294	Msa1281180:intron	50.0%
!	GTACGTACCTCGGAGGTTTT+AGG	+	chr8_3:20560509-20560528	None:intergenic	50.0%
	GAATGAAGTACGTACCTCGG+AGG	+	chr8_3:20560516-20560535	None:intergenic	50.0%
!!	ATCCAACTGGTACCGGCAAA+GGG	-	chr8_3:20560781-20560800	Msa1281180:intron	50.0%
	AATACTAGTCCCCCCTTTGC+CGG	+	chr8_3:20560796-20560815	None:intergenic	50.0%
!	GCAAAGGGGGGACTAGTATT+TGG	-	chr8_3:20560796-20560815	Msa1281180:intron	50.0%
	GTCAAGTCCCAGGCTATGTT+TGG	+	chr8_3:20562018-20562037	None:intergenic	50.0%
	TGTTGTGCAGACTCCAACAG+GGG	-	chr8_3:20562199-20562218	Msa1281180:intron	50.0%
!	AATCCACTTGCTGGCTAGAC+TGG	-	chr8_3:20562275-20562294	Msa1281180:intron	50.0%
	CGAAGTCCCTAAAACCTCCG+AGG	-	chr8_3:20560499-20560518	Msa1281180:three_prime_UTR	55.0%
	GGTGGAGATCCAACTGGTAC+CGG	-	chr8_3:20560774-20560793	Msa1281180:intron	55.0%
!!	GATCCAACTGGTACCGGCAA+AGG	-	chr8_3:20560780-20560799	Msa1281180:intron	55.0%
!!	TCCAACTGGTACCGGCAAAG+GGG	-	chr8_3:20560782-20560801	Msa1281180:intron	55.0%
	AGACCAGTCTAGCCAGCAAG+TGG	+	chr8_3:20562281-20562300	None:intergenic	55.0%
	CGAAGTCCCTAAAACCTCCG+AGG	-	chr8_3:20560499-20560518	Msa1281180:three_prime_UTR	55.0%
	GGTGGAGATCCAACTGGTAC+CGG	-	chr8_3:20560774-20560793	Msa1281180:intron	55.0%
!!	GATCCAACTGGTACCGGCAA+AGG	-	chr8_3:20560780-20560799	Msa1281180:intron	55.0%
!!	TCCAACTGGTACCGGCAAAG+GGG	-	chr8_3:20560782-20560801	Msa1281180:intron	55.0%
	AGACCAGTCTAGCCAGCAAG+TGG	+	chr8_3:20562281-20562300	None:intergenic	55.0%
!!	CCAACTGGTACCGGCAAAGG+GGG	-	chr8_3:20560783-20560802	Msa1281180:intron	60.0%
!!	CAACTGGTACCGGCAAAGGG+GGG	-	chr8_3:20560784-20560803	Msa1281180:intron	60.0%
	TGCAGACTCCAACAGGGGCA+GGG	-	chr8_3:20562204-20562223	Msa1281180:intron	60.0%
!!	CCAACTGGTACCGGCAAAGG+GGG	-	chr8_3:20560783-20560802	Msa1281180:intron	60.0%
!!	CAACTGGTACCGGCAAAGGG+GGG	-	chr8_3:20560784-20560803	Msa1281180:intron	60.0%
	TGCAGACTCCAACAGGGGCA+GGG	-	chr8_3:20562204-20562223	Msa1281180:intron	60.0%
	CCCCCTTTGCCGGTACCAGT+TGG	+	chr8_3:20560786-20560805	None:intergenic	65.0%
	GTGCAGACTCCAACAGGGGC+AGG	-	chr8_3:20562203-20562222	Msa1281180:intron	65.0%
	GCAGACTCCAACAGGGGCAG+GGG	-	chr8_3:20562205-20562224	Msa1281180:intron	65.0%
	CCCCCTTTGCCGGTACCAGT+TGG	+	chr8_3:20560786-20560805	None:intergenic	65.0%
	GTGCAGACTCCAACAGGGGC+AGG	-	chr8_3:20562203-20562222	Msa1281180:intron	65.0%
	GCAGACTCCAACAGGGGCAG+GGG	-	chr8_3:20562205-20562224	Msa1281180:intron	65.0%
	GGTCGATCCCCTGCCCCTGT+TGG	+	chr8_3:20562215-20562234	None:intergenic	70.0%
	GGTCGATCCCCTGCCCCTGT+TGG	+	chr8_3:20562215-20562234	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	20560253	20562570	20560253	ID=Msa1281180;Name=Msa1281180
chr8_3	mRNA	20560253	20562570	20560253	ID=Msa1281180-mRNA-1;Parent=Msa1281180;Name=Msa1281180-mRNA-1;_AED=0.05;_eAED=0.05;_QI=109\|1\|1\|1\|1\|1\|5\|278\|160
chr8_3	exon	20560253	20560614	20560253	ID=Msa1281180-mRNA-1:exon:7521;Parent=Msa1281180-mRNA-1
chr8_3	exon	20561334	20561492	20561334	ID=Msa1281180-mRNA-1:exon:7520;Parent=Msa1281180-mRNA-1
chr8_3	exon	20561966	20562127	20561966	ID=Msa1281180-mRNA-1:exon:7519;Parent=Msa1281180-mRNA-1
chr8_3	exon	20562303	20562377	20562303	ID=Msa1281180-mRNA-1:exon:7518;Parent=Msa1281180-mRNA-1
chr8_3	exon	20562459	20562570	20562459	ID=Msa1281180-mRNA-1:exon:7517;Parent=Msa1281180-mRNA-1
chr8_3	five_prime_UTR	20562462	20562570	20562462	ID=Msa1281180-mRNA-1:five_prime_utr;Parent=Msa1281180-mRNA-1
chr8_3	CDS	20562459	20562461	20562459	ID=Msa1281180-mRNA-1:cds;Parent=Msa1281180-mRNA-1
chr8_3	CDS	20562303	20562377	20562303	ID=Msa1281180-mRNA-1:cds;Parent=Msa1281180-mRNA-1
chr8_3	CDS	20561966	20562127	20561966	ID=Msa1281180-mRNA-1:cds;Parent=Msa1281180-mRNA-1
chr8_3	CDS	20561334	20561492	20561334	ID=Msa1281180-mRNA-1:cds;Parent=Msa1281180-mRNA-1
chr8_3	CDS	20560531	20560614	20560531	ID=Msa1281180-mRNA-1:cds;Parent=Msa1281180-mRNA-1
chr8_3	three_prime_UTR	20560253	20560530	20560253	ID=Msa1281180-mRNA-1:three_prime_utr;Parent=Msa1281180-mRNA-1

Gene Sequence

>Msa1281180

ATGTCGGTTACTCTCCACACAAACCTAGGTGACATCAAATGCGAAATCTTCTGCGACGAAGTCCCTAAAACCTCCGAGAATTTTTTAGCGCTTTGTGCAAGTGGTTACTTTGATGGGACTATATTTCACCGCAATATTAAAGGCTTTATGATTCAAGGTGGAGATCCAACTGGTACCGGCAAAGGGGGGACTAGTATTTGGGGAAAGAAATTCAACGACGAGATAAGAGAATCTTTGAAGCATAATGCAAGGGGAATATTGTCAATGGCTAACAGTGGTCCAAATACTAATGGAAGTCAGTTCTTCATAAGTTATGCAAAACAACCACATTTGAATGGACTATACACCGTGTTTGGAAGAGTAATTCATGGATTTGAAGTTCTTGATCTCATGGAAAAGACTCCAACAGGGGCAGGGGATCGACCACTTGCAGAGATAAGGCTCAATCGTGTAACAATGCATTCTAATCCACTTGCTGGCTAG

Protein sequence

>Msa1281180

MSVTLHTNLGDIKCEIFCDEVPKTSENFLALCASGYFDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKTPTGAGDRPLAEIRLNRVTMHSNPLAG*