Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398730 | XP_013461721.1 | 77.717 | 368 | 10 | 3 | 1 | 350 | 1 | 314 | 0.0 | 542 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398730 | sp|Q4V3E2|MRG2_ARATH | 42.462 | 325 | 113 | 3 | 33 | 336 | 52 | 323 | 3.11e-81 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398730 | A0A072V241 | 77.717 | 368 | 10 | 3 | 1 | 350 | 1 | 314 | 0.0 | 542 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004860 | Msa0398730 | 0.801086 | 1.062975e-48 | -8.615850e-47 |
| Msa0004920 | Msa0398730 | 0.807683 | 4.484574e-50 | -8.615850e-47 |
| Msa0040450 | Msa0398730 | 0.824668 | 7.126764e-54 | -8.615850e-47 |
| Msa0047050 | Msa0398730 | 0.808439 | 3.095331e-50 | -8.615850e-47 |
| Msa0051770 | Msa0398730 | 0.809981 | 1.446257e-50 | -8.615850e-47 |
| Msa0105420 | Msa0398730 | 0.806734 | 7.124058e-50 | -8.615850e-47 |
| Msa0145670 | Msa0398730 | 0.800228 | 1.590389e-48 | -8.615850e-47 |
| Msa0171020 | Msa0398730 | 0.802539 | 5.347216e-49 | -8.615850e-47 |
| Msa0188630 | Msa0398730 | 0.808353 | 3.229410e-50 | -8.615850e-47 |
| Msa0191050 | Msa0398730 | 0.803260 | 3.794339e-49 | -8.615850e-47 |
| Msa0205850 | Msa0398730 | 0.801761 | 7.730016e-49 | -8.615850e-47 |
| Msa0233350 | Msa0398730 | 0.817352 | 3.447080e-52 | -8.615850e-47 |
| Msa0372660 | Msa0398730 | 0.817707 | 2.867457e-52 | -8.615850e-47 |
| Msa0372670 | Msa0398730 | 0.811001 | 8.707450e-51 | -8.615850e-47 |
| Msa0389340 | Msa0398730 | 0.808712 | 2.707195e-50 | -8.615850e-47 |
| Msa0395870 | Msa0398730 | 0.800313 | 1.528269e-48 | -8.615850e-47 |
| Msa0398710 | Msa0398730 | 0.834678 | 2.608824e-56 | -8.615850e-47 |
| Msa0398730 | Msa0420840 | 0.822587 | 2.187179e-53 | -8.615850e-47 |
| Msa0398730 | Msa0423040 | 0.829596 | 4.711003e-55 | -8.615850e-47 |
| Msa0398730 | Msa0432770 | 0.830361 | 3.066507e-55 | -8.615850e-47 |
| Msa0398730 | Msa0436050 | 0.802520 | 5.394829e-49 | -8.615850e-47 |
| Msa0398730 | Msa0442670 | 0.800469 | 1.420691e-48 | -8.615850e-47 |
| Msa0398730 | Msa0480000 | 0.826984 | 2.009456e-54 | -8.615850e-47 |
| Msa0398730 | Msa0488400 | 0.800494 | 1.403987e-48 | -8.615850e-47 |
| Msa0398730 | Msa0500360 | 0.808763 | 2.640088e-50 | -8.615850e-47 |
| Msa0398730 | Msa0505770 | 0.803537 | 3.324580e-49 | -8.615850e-47 |
| Msa0398730 | Msa0507680 | 0.804512 | 2.084941e-49 | -8.615850e-47 |
| Msa0398730 | Msa0516320 | 0.822258 | 2.607429e-53 | -8.615850e-47 |
| Msa0398730 | Msa0517330 | 0.804899 | 1.731231e-49 | -8.615850e-47 |
| Msa0398730 | Msa0638280 | 0.812356 | 4.417026e-51 | -8.615850e-47 |
| Msa0398730 | Msa0638320 | 0.824249 | 8.941886e-54 | -8.615850e-47 |
| Msa0398730 | Msa0677270 | 0.828554 | 8.427628e-55 | -8.615850e-47 |
| Msa0398730 | Msa0692230 | 0.809245 | 2.081732e-50 | -8.615850e-47 |
| Msa0398730 | Msa0724830 | 0.805890 | 1.073050e-49 | -8.615850e-47 |
| Msa0398730 | Msa0743260 | 0.806203 | 9.221362e-50 | -8.615850e-47 |
| Msa0398730 | Msa0751070 | 0.809101 | 2.235172e-50 | -8.615850e-47 |
| Msa0398730 | Msa0760380 | 0.823751 | 1.170060e-53 | -8.615850e-47 |
| Msa0398730 | Msa0831580 | 0.808589 | 2.876023e-50 | -8.615850e-47 |
| Msa0398730 | Msa0876200 | 0.805072 | 1.592856e-49 | -8.615850e-47 |
| Msa0398730 | Msa0944770 | 0.807603 | 4.663238e-50 | -8.615850e-47 |
| Msa0398730 | Msa1082500 | 0.805845 | 1.096475e-49 | -8.615850e-47 |
| Msa0398730 | Msa1083210 | 0.809015 | 2.332053e-50 | -8.615850e-47 |
| Msa0398730 | Msa1111110 | 0.827866 | 1.234404e-54 | -8.615850e-47 |
| Msa0398730 | Msa1127650 | 0.800707 | 1.270525e-48 | -8.615850e-47 |
| Msa0398730 | Msa1171870 | 0.811040 | 8.542236e-51 | -8.615850e-47 |
| Msa0398730 | Msa1199560 | 0.816302 | 5.931473e-52 | -8.615850e-47 |
| Msa0398730 | Msa1203250 | 0.820838 | 5.549857e-53 | -8.615850e-47 |
| Msa0398730 | Msa1206020 | 0.812114 | 4.989479e-51 | -8.615850e-47 |
| Msa0398730 | Msa1217660 | 0.800286 | 1.547895e-48 | -8.615850e-47 |
| Msa0398730 | Msa1240310 | 0.806052 | 9.918651e-50 | -8.615850e-47 |
| Msa0398730 | Msa1264020 | 0.809476 | 1.857333e-50 | -8.615850e-47 |
| Msa0398730 | Msa1281180 | 0.808926 | 2.435964e-50 | -8.615850e-47 |
| Msa0398730 | Msa1297090 | 0.811310 | 7.462807e-51 | -8.615850e-47 |
| Msa0398730 | Msa1304820 | 0.801389 | 9.213328e-49 | -8.615850e-47 |
| Msa0398730 | Msa1306430 | 0.811576 | 6.533169e-51 | -8.615850e-47 |
| Msa0398730 | Msa1320740 | 0.821119 | 4.782638e-53 | -8.615850e-47 |
| Msa0398730 | Msa1328850 | 0.813202 | 2.884506e-51 | -8.615850e-47 |
| Msa0398730 | Msa1342430 | 0.812530 | 4.048362e-51 | -8.615850e-47 |
| Msa0398730 | Msa1343820 | 0.801899 | 7.241445e-49 | -8.615850e-47 |
| Msa0398730 | Msa1371430 | 0.834449 | 2.979060e-56 | -8.615850e-47 |
| Msa0398730 | Msa1384350 | 0.809001 | 2.347163e-50 | -8.615850e-47 |
| Msa0398730 | Msa1385670 | 0.803097 | 4.100568e-49 | -8.615850e-47 |
| Msa0398730 | Msa1392200 | 0.804091 | 2.550580e-49 | -8.615850e-47 |
| Msa0398730 | Msa1404730 | 0.807470 | 4.976381e-50 | -8.615850e-47 |
| Msa0398730 | Msa1415640 | 0.826765 | 2.266376e-54 | -8.615850e-47 |
| Msa0398730 | Msa1423450 | 0.802266 | 6.087776e-49 | -8.615850e-47 |
| Msa0398730 | Msa1425010 | 0.806723 | 7.161528e-50 | -8.615850e-47 |
| Msa0248980 | Msa0398730 | 0.804956 | 1.683951e-49 | -8.615850e-47 |
| Msa0317250 | Msa0398730 | 0.801216 | 9.995476e-49 | -8.615850e-47 |
| Msa0320100 | Msa0398730 | 0.803956 | 2.721528e-49 | -8.615850e-47 |
| Msa0335040 | Msa0398730 | 0.810200 | 1.297246e-50 | -8.615850e-47 |
| Msa0355270 | Msa0398730 | 0.800542 | 1.372784e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398730 | MtrunA17_Chr3g0134331 | 77.717 | 368 | 10 | 3 | 1 | 350 | 1 | 314 | 0.0 | 542 |
| Msa0398730 | MtrunA17_Chr4g0053451 | 41.713 | 362 | 116 | 7 | 2 | 330 | 6 | 305 | 1.19e-76 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398730 | AT1G02740.1 | 42.462 | 325 | 113 | 3 | 33 | 336 | 52 | 323 | 3.16e-82 | 253 |
| Msa0398730 | AT4G37280.1 | 38.596 | 342 | 123 | 5 | 33 | 341 | 29 | 316 | 1.78e-73 | 231 |
Find 67 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACGATCCACGAGGCTTTC+TGG | 0.172555 | 3_2:-20719488 | None:intergenic |
| TGCTGTTCTCAACATCTTCT+TGG | 0.245431 | 3_2:-20722937 | None:intergenic |
| TAGGAGGTGTTCTTTGTTGC+TGG | 0.251794 | 3_2:+20718790 | Msa0398730:five_prime_UTR |
| TCAAGTGTTACTTGTAGTTT+TGG | 0.262805 | 3_2:+20723067 | Msa0398730:three_prime_UTR |
| AAGGGAGAGAAACTATTTAA+AGG | 0.289039 | 3_2:+20723112 | Msa0398730:three_prime_UTR |
| CATAAGTGTCTTAGCTCTTA+AGG | 0.290922 | 3_2:+20722382 | Msa0398730:CDS |
| CACCTAGTGCTACTGCGTTT+TGG | 0.294217 | 3_2:-20718867 | None:intergenic |
| AATTGCTTCTTTAGTGTTAG+TGG | 0.296530 | 3_2:-20721315 | None:intergenic |
| GAGCATTTGTTACGTCTCTT+TGG | 0.315634 | 3_2:+20722280 | Msa0398730:CDS |
| AACATCCGTATTTCCATAAC+AGG | 0.319709 | 3_2:-20722456 | None:intergenic |
| TTGAATATGTCGTTCACATT+AGG | 0.321893 | 3_2:-20721565 | None:intergenic |
| TATCGTTTGGACAAGCTTCT+TGG | 0.327945 | 3_2:-20722231 | None:intergenic |
| CTTGCACTTGATGAGAAATA+TGG | 0.334212 | 3_2:+20719451 | Msa0398730:CDS |
| CACAAATACTTGACTTTCTC+AGG | 0.343256 | 3_2:+20722738 | Msa0398730:CDS |
| AAGAAGAACTAGAATGAAAA+TGG | 0.345730 | 3_2:+20718892 | Msa0398730:exon |
| GTTGCACTTGCACCCTGTTA+TGG | 0.379206 | 3_2:+20722443 | Msa0398730:CDS |
| TAGATTTAATTAGTTGTTCA+AGG | 0.381785 | 3_2:+20723151 | Msa0398730:three_prime_UTR |
| AAAGAATGATTCTCTGGTTA+AGG | 0.387942 | 3_2:+20720995 | Msa0398730:CDS |
| TTGTTCCATGCTAACATTGA+AGG | 0.392194 | 3_2:+20722692 | Msa0398730:CDS |
| TTTACTGCAGTTGGGATGAA+TGG | 0.398180 | 3_2:+20719377 | Msa0398730:intron |
| ATCGCTCCTTCTGCTATATA+TGG | 0.401350 | 3_2:+20722253 | Msa0398730:CDS |
| GCAGAAGGAGCGATATCGTT+TGG | 0.409875 | 3_2:-20722244 | None:intergenic |
| TAATTAGTTGTTCAAGGAAA+AGG | 0.413446 | 3_2:+20723157 | Msa0398730:three_prime_UTR |
| TTTGCAAAATGCTGGCCATT+TGG | 0.416533 | 3_2:+20722490 | Msa0398730:CDS |
| AGGAGGTGTTCTTTGTTGCT+GGG | 0.420028 | 3_2:+20718791 | Msa0398730:five_prime_UTR |
| TCCGTTTCTCCTTACGATGA+AGG | 0.428559 | 3_2:+20718989 | Msa0398730:CDS |
| TATCTGACCATTCGAACTCT+TGG | 0.433463 | 3_2:-20719509 | None:intergenic |
| AGAATGCTTGTTACAAATGC+AGG | 0.437753 | 3_2:+20723011 | Msa0398730:three_prime_UTR |
| GATTACAGATTGAAGAAAAG+TGG | 0.438131 | 3_2:+20721598 | Msa0398730:CDS |
| TCTCTCCCTTAATCCTGAAA+AGG | 0.451248 | 3_2:-20723099 | None:intergenic |
| AAAACGAAAGAATGATTCTC+TGG | 0.464533 | 3_2:+20720989 | Msa0398730:CDS |
| TGCACCCTGTTATGGAAATA+CGG | 0.466904 | 3_2:+20722451 | Msa0398730:CDS |
| TCCTTTCATAATTTCTTCAA+CGG | 0.472345 | 3_2:-20722143 | None:intergenic |
| TCCTTCATCGTAAGGAGAAA+CGG | 0.473763 | 3_2:-20718990 | None:intergenic |
| CTTGGACATGATAAGAAGAA+AGG | 0.478796 | 3_2:-20722919 | None:intergenic |
| TTTGAGTTTATTACTCATCT+CGG | 0.485685 | 3_2:+20721348 | Msa0398730:CDS |
| CGACACATTGATAGAACTCC+AGG | 0.487335 | 3_2:+20722715 | Msa0398730:CDS |
| TTATTGTACAAGAGCATCAC+TGG | 0.493203 | 3_2:-20722193 | None:intergenic |
| TCCGTTGAAGAAATTATGAA+AGG | 0.507459 | 3_2:+20722142 | Msa0398730:CDS |
| TGAATGTTGACAAGTTTGTC+CGG | 0.509456 | 3_2:-20721288 | None:intergenic |
| TTACTGCAGTTGGGATGAAT+GGG | 0.516086 | 3_2:+20719378 | Msa0398730:intron |
| TTCTTGTCTTTATGAAGCCA+AGG | 0.516398 | 3_2:+20719036 | Msa0398730:CDS |
| ACTTTCTCTCCTTCATCGTA+AGG | 0.528874 | 3_2:-20718998 | None:intergenic |
| GAAAGTCAAGTATTTGTGCC+TGG | 0.560002 | 3_2:-20722733 | None:intergenic |
| TGTTATGGAAATACGGATGT+TGG | 0.573911 | 3_2:+20722458 | Msa0398730:CDS |
| TGCAAGTGCAACAATTAAGT+CGG | 0.584029 | 3_2:-20722432 | None:intergenic |
| TTAGCATGGAACAATAACTC+TGG | 0.593094 | 3_2:-20722683 | None:intergenic |
| GGATCGTCCAAGAGTTCGAA+TGG | 0.602928 | 3_2:+20719502 | Msa0398730:CDS |
| TGTGTGAGGCTGATTCCAAA+TGG | 0.612083 | 3_2:-20722505 | None:intergenic |
| GAATGCTTGTTACAAATGCA+GGG | 0.615375 | 3_2:+20723012 | Msa0398730:three_prime_UTR |
| TGTCGCCTTCAATGTTAGCA+TGG | 0.620025 | 3_2:-20722697 | None:intergenic |
| AACCAAAACGCAGTAGCACT+AGG | 0.621202 | 3_2:+20718865 | Msa0398730:five_prime_UTR |
| TGCAGTTGGGATGAATGGGT+TGG | 0.622269 | 3_2:+20719382 | Msa0398730:intron |
| TCAGCACCATATATAGCAGA+AGG | 0.623119 | 3_2:-20722259 | None:intergenic |
| TTTGGAATCAGCCTCACACA+TGG | 0.625253 | 3_2:+20722508 | Msa0398730:CDS |
| AAATGTAATGCAGTAGCAAG+AGG | 0.629755 | 3_2:+20720963 | Msa0398730:intron |
| GTTTATTACTCATCTCGGCA+AGG | 0.637047 | 3_2:+20721353 | Msa0398730:CDS |
| TTGGAATCAGCCTCACACAT+GGG | 0.640684 | 3_2:+20722509 | Msa0398730:CDS |
| ATAATATCACATAGCTTCTG+CGG | 0.641242 | 3_2:+20722984 | Msa0398730:exon |
| CTTCATAAAGACAAGAAGTG+TGG | 0.647600 | 3_2:-20719030 | None:intergenic |
| TAGCAATAAACCCATGTGTG+AGG | 0.649617 | 3_2:-20722519 | None:intergenic |
| GAACTCTTGGACGATCCACG+AGG | 0.665911 | 3_2:-20719496 | None:intergenic |
| AACATACTGAGGAAAATATG+CGG | 0.687491 | 3_2:+20719422 | Msa0398730:CDS |
| AAGAATGCCAGAAAGCCTCG+TGG | 0.700259 | 3_2:+20719481 | Msa0398730:CDS |
| TCGTTCACATTAGGAGTACG+AGG | 0.705008 | 3_2:-20721556 | None:intergenic |
| TCGATTGATGAAACATACTG+AGG | 0.706974 | 3_2:+20719411 | Msa0398730:CDS |
| ACATCCGTATTTCCATAACA+GGG | 0.747296 | 3_2:-20722455 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTAAATTTAACATGAT+TGG | + | chr3_2:20720045-20720064 | Msa0398730:intron | 10.0% |
| !! | AATTTAAATTTAACATGATT+GGG | + | chr3_2:20720046-20720065 | Msa0398730:intron | 10.0% |
| !! | TAATTTAACATAAAATTAAG+AGG | - | chr3_2:20722776-20722795 | None:intergenic | 10.0% |
| !!! | TTGTTTAACCTATTAATTTT+CGG | - | chr3_2:20719136-20719155 | None:intergenic | 15.0% |
| !!! | ATGTGAATTGTATTTTTAAT+AGG | - | chr3_2:20719970-20719989 | None:intergenic | 15.0% |
| !! | TATTAAAAATACAATTCACA+TGG | + | chr3_2:20719969-20719988 | Msa0398730:intron | 15.0% |
| !!! | TTGTTATTAGTATTATTTTC+AGG | + | chr3_2:20720094-20720113 | Msa0398730:intron | 15.0% |
| !!! | TGTTATTAGTATTATTTTCA+GGG | + | chr3_2:20720095-20720114 | Msa0398730:intron | 15.0% |
| !!! | TATTTTAATTTCATATGCTT+TGG | + | chr3_2:20720353-20720372 | Msa0398730:intron | 15.0% |
| !!! | TTTAAATTTTAATTTGTACC+AGG | + | chr3_2:20721029-20721048 | Msa0398730:intron | 15.0% |
| !! | TATTTATTCAGTCAATATTT+AGG | + | chr3_2:20721903-20721922 | Msa0398730:intron | 15.0% |
| !! | TTAAATGTTAAATTAGTCAT+TGG | + | chr3_2:20722812-20722831 | Msa0398730:intron | 15.0% |
| !! | TATAGTGAAAATGTTGAATT+AGG | - | chr3_2:20719108-20719127 | None:intergenic | 20.0% |
| !! | ATACTATGCTATAAAAAACA+AGG | - | chr3_2:20719588-20719607 | None:intergenic | 20.0% |
| !! | ATAGTATAAATAGTAGAGAT+AGG | + | chr3_2:20719601-20719620 | Msa0398730:intron | 20.0% |
| !! | CATGTTAAATTTAAATTACG+AGG | - | chr3_2:20720043-20720062 | None:intergenic | 20.0% |
| !!! | GTTATTAGTATTATTTTCAG+GGG | + | chr3_2:20720096-20720115 | Msa0398730:intron | 20.0% |
| !! | AATGCCATAAAAAGTTTAAT+AGG | - | chr3_2:20720266-20720285 | None:intergenic | 20.0% |
| !!! | TATATCCTTATCATTTTGTA+TGG | - | chr3_2:20720384-20720403 | None:intergenic | 20.0% |
| !!! | AATTTTCTTTTGAGTTTGAA+TGG | - | chr3_2:20720488-20720507 | None:intergenic | 20.0% |
| !! | ATTCAAACTCAAAAGAAAAT+TGG | + | chr3_2:20720487-20720506 | Msa0398730:intron | 20.0% |
| !! | TTAGGAATGTAATCATTATA+GGG | + | chr3_2:20720649-20720668 | Msa0398730:intron | 20.0% |
| !! | TTCTTTGTAGAAAAGATAAT+AGG | + | chr3_2:20720687-20720706 | Msa0398730:intron | 20.0% |
| !!! | TTATTTTTCTTGTAGTTATG+TGG | + | chr3_2:20720869-20720888 | Msa0398730:intron | 20.0% |
| !! | TATCATATATGATTATTTCC+TGG | - | chr3_2:20721050-20721069 | None:intergenic | 20.0% |
| !! | ATAAACTATGTCAAATTAGT+CGG | + | chr3_2:20721115-20721134 | Msa0398730:intron | 20.0% |
| !!! | TTACAACTTTTTTTGACTAT+AGG | + | chr3_2:20721209-20721228 | Msa0398730:intron | 20.0% |
| !!! | TACAACTTTTTTTGACTATA+GGG | + | chr3_2:20721210-20721229 | Msa0398730:intron | 20.0% |
| !! | ACTATAGGGTATAATATAAT+TGG | + | chr3_2:20721224-20721243 | Msa0398730:intron | 20.0% |
| !! | TTTATTGTTTGCTTAATATC+AGG | + | chr3_2:20721248-20721267 | Msa0398730:intron | 20.0% |
| !!! | TATATATCATTTTGGAGTAA+CGG | + | chr3_2:20721712-20721731 | Msa0398730:intron | 20.0% |
| !! | ATCTAATTGTAAAAAGATTG+AGG | - | chr3_2:20721858-20721877 | None:intergenic | 20.0% |
| !!! | AAGCTGTTATTTTAGAAAAA+GGG | - | chr3_2:20721884-20721903 | None:intergenic | 20.0% |
| !!! | TAAGCTGTTATTTTAGAAAA+AGG | - | chr3_2:20721885-20721904 | None:intergenic | 20.0% |
| !! | ATTACAGTTTAATTCTATGT+TGG | + | chr3_2:20722103-20722122 | Msa0398730:intron | 20.0% |
| !! | TTTAATTCTATGTTGGATAT+AGG | + | chr3_2:20722110-20722129 | Msa0398730:intron | 20.0% |
| !! | TAGATTTAATTAGTTGTTCA+AGG | + | chr3_2:20723151-20723170 | Msa0398730:three_prime_UTR | 20.0% |
| !!! | GCGTTTTGGTTTTTATTAAA+TGG | - | chr3_2:20718856-20718875 | None:intergenic | 25.0% |
| ! | AAGAAGAACTAGAATGAAAA+TGG | + | chr3_2:20718892-20718911 | Msa0398730:exon | 25.0% |
| ! | GGTTTAAATAAGAACGAAAA+AGG | - | chr3_2:20719087-20719106 | None:intergenic | 25.0% |
| ! | ATACTCTTCCGAAAATTAAT+AGG | + | chr3_2:20719125-20719144 | Msa0398730:intron | 25.0% |
| ! | TTGAATACAAACATAAACGA+TGG | + | chr3_2:20719157-20719176 | Msa0398730:intron | 25.0% |
| !!! | TTTTGTTTTCGTAACTCTAA+GGG | + | chr3_2:20719244-20719263 | Msa0398730:intron | 25.0% |
| !!! | ATTCAATTTTCCTTGTTTCA+GGG | + | chr3_2:20719267-20719286 | Msa0398730:intron | 25.0% |
| ! | TATGCTATAAAAAACAAGGA+AGG | - | chr3_2:20719584-20719603 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATAACCTATTT+TGG | - | chr3_2:20719738-20719757 | None:intergenic | 25.0% |
| !!! | AAGTACTTTTTTGTTGTTGA+AGG | - | chr3_2:20719842-20719861 | None:intergenic | 25.0% |
| ! | ATAAATTATATGGTCCTGTT+TGG | - | chr3_2:20719910-20719929 | None:intergenic | 25.0% |
| ! | ACAAGTTATTATCCAAAACT+TGG | - | chr3_2:20720140-20720159 | None:intergenic | 25.0% |
| !!! | AGTTTTGGATAATAACTTGT+TGG | + | chr3_2:20720140-20720159 | Msa0398730:intron | 25.0% |
| !!! | GTTTTGGATAATAACTTGTT+GGG | + | chr3_2:20720141-20720160 | Msa0398730:intron | 25.0% |
| ! | AATGCCATCAAAAGTTTAAT+AGG | - | chr3_2:20720209-20720228 | None:intergenic | 25.0% |
| !! | TTGATGGCATTTGTATATAA+TGG | + | chr3_2:20720218-20720237 | Msa0398730:intron | 25.0% |
| !! | ACCTCCTATTAAACTTTTTA+TGG | + | chr3_2:20720259-20720278 | Msa0398730:intron | 25.0% |
| ! | TTTATGGCATTTGTGTATAA+TGG | + | chr3_2:20720275-20720294 | Msa0398730:intron | 25.0% |
| ! | ATCTACCATACAAAATGATA+AGG | + | chr3_2:20720376-20720395 | Msa0398730:intron | 25.0% |
| ! | ACAAAATGATAAGGATATAG+AGG | + | chr3_2:20720385-20720404 | Msa0398730:intron | 25.0% |
| ! | CAAAATGATAAGGATATAGA+GGG | + | chr3_2:20720386-20720405 | Msa0398730:intron | 25.0% |
| ! | TAACAATTGTACTGTTGTAT+GGG | + | chr3_2:20720522-20720541 | Msa0398730:intron | 25.0% |
| ! | ATAGATAAGGATGTTATGAT+GGG | + | chr3_2:20720595-20720614 | Msa0398730:intron | 25.0% |
| ! | CTTAGGAATGTAATCATTAT+AGG | + | chr3_2:20720648-20720667 | Msa0398730:intron | 25.0% |
| ! | TAATCATTATAGGGAAAGTT+TGG | + | chr3_2:20720658-20720677 | Msa0398730:intron | 25.0% |
| ! | AATCATTATAGGGAAAGTTT+GGG | + | chr3_2:20720659-20720678 | Msa0398730:intron | 25.0% |
| !!! | TAAACCAATCTAAGACATTT+TGG | + | chr3_2:20720937-20720956 | Msa0398730:intron | 25.0% |
| !!! | AAACCAATCTAAGACATTTT+GGG | + | chr3_2:20720938-20720957 | Msa0398730:intron | 25.0% |
| ! | TTAATATCAGGAAAAACTTG+CGG | + | chr3_2:20721260-20721279 | Msa0398730:intron | 25.0% |
| !! | TTTGAGTTTATTACTCATCT+CGG | + | chr3_2:20721348-20721367 | Msa0398730:CDS | 25.0% |
| ! | TTCAACACAAAGCTTAAATA+TGG | - | chr3_2:20721650-20721669 | None:intergenic | 25.0% |
| ! | TCCTTTCATAATTTCTTCAA+CGG | - | chr3_2:20722146-20722165 | None:intergenic | 25.0% |
| !! | ACAAGATGGTTATTTCATTT+AGG | + | chr3_2:20722325-20722344 | Msa0398730:intron | 25.0% |
| !!! | TTCTGTAAAGCTTTATTATC+CGG | + | chr3_2:20722596-20722615 | Msa0398730:intron | 25.0% |
| ! | AATGTTAAATTAGTCATTGG+TGG | + | chr3_2:20722815-20722834 | Msa0398730:intron | 25.0% |
| ! | TTCTGTAACTATCTATTTCA+TGG | + | chr3_2:20722861-20722880 | Msa0398730:intron | 25.0% |
| ! | TAATTAGTTGTTCAAGGAAA+AGG | + | chr3_2:20723157-20723176 | Msa0398730:three_prime_UTR | 25.0% |
| AAAGGAAAGAAAAACGAGAA+AGG | - | chr3_2:20719069-20719088 | None:intergenic | 30.0% | |
| !!! | GTTTTGTTTTCGTAACTCTA+AGG | + | chr3_2:20719243-20719262 | Msa0398730:intron | 30.0% |
| !! | GATTCAATTTTCCTTGTTTC+AGG | + | chr3_2:20719266-20719285 | Msa0398730:intron | 30.0% |
| AACATACTGAGGAAAATATG+CGG | + | chr3_2:20719422-20719441 | Msa0398730:CDS | 30.0% | |
| TTTCAATGCTTTAACTACTC+AGG | + | chr3_2:20719537-20719556 | Msa0398730:intron | 30.0% | |
| !! | TTAGTATTATTTTCAGGGGA+AGG | + | chr3_2:20720100-20720119 | Msa0398730:intron | 30.0% |
| !! | TAGTATTATTTTCAGGGGAA+GGG | + | chr3_2:20720101-20720120 | Msa0398730:intron | 30.0% |
| ! | ACCTCCTATTAAACTTTTGA+TGG | + | chr3_2:20720202-20720221 | Msa0398730:intron | 30.0% |
| GCCATAAAAAGTTTAATAGG+AGG | - | chr3_2:20720263-20720282 | None:intergenic | 30.0% | |
| GACGAAATCAACGAATAATT+TGG | + | chr3_2:20720439-20720458 | Msa0398730:intron | 30.0% | |
| GTAACAATTGTACTGTTGTA+TGG | + | chr3_2:20720521-20720540 | Msa0398730:intron | 30.0% | |
| AACTCACTGTTTCATAGATA+AGG | + | chr3_2:20720582-20720601 | Msa0398730:intron | 30.0% | |
| CATAGATAAGGATGTTATGA+TGG | + | chr3_2:20720594-20720613 | Msa0398730:intron | 30.0% | |
| ! | AAGATAATAGGTATTGTCCT+AGG | + | chr3_2:20720699-20720718 | Msa0398730:intron | 30.0% |
| TAGTTATGTGGTAAAGTAAG+AGG | + | chr3_2:20720881-20720900 | Msa0398730:intron | 30.0% | |
| TTTCCCAAAATGTCTTAGAT+TGG | - | chr3_2:20720944-20720963 | None:intergenic | 30.0% | |
| AAAACGAAAGAATGATTCTC+TGG | + | chr3_2:20720989-20721008 | Msa0398730:CDS | 30.0% | |
| AAAGAATGATTCTCTGGTTA+AGG | + | chr3_2:20720995-20721014 | Msa0398730:CDS | 30.0% | |
| AATTGCTTCTTTAGTGTTAG+TGG | - | chr3_2:20721318-20721337 | None:intergenic | 30.0% | |
| AATTGGCTGTAAAGAAAATG+AGG | - | chr3_2:20721436-20721455 | None:intergenic | 30.0% | |
| !! | CAATTTGATATAGCTTTGGA+CGG | + | chr3_2:20721451-20721470 | Msa0398730:intron | 30.0% |
| TTGAATATGTCGTTCACATT+AGG | - | chr3_2:20721568-20721587 | None:intergenic | 30.0% | |
| GATTACAGATTGAAGAAAAG+TGG | + | chr3_2:20721598-20721617 | Msa0398730:CDS | 30.0% | |
| ACACAAAGCTTAAATATGGA+GGG | - | chr3_2:20721646-20721665 | None:intergenic | 30.0% | |
| AACACAAAGCTTAAATATGG+AGG | - | chr3_2:20721647-20721666 | None:intergenic | 30.0% | |
| ! | TTTGAAAACAGTTTTCTGCT+TGG | - | chr3_2:20721791-20721810 | None:intergenic | 30.0% |
| ATTGGAACTTTCTATCAACT+GGG | - | chr3_2:20721938-20721957 | None:intergenic | 30.0% | |
| TATTGGAACTTTCTATCAAC+TGG | - | chr3_2:20721939-20721958 | None:intergenic | 30.0% | |
| TGAACACAAAAACAGATTTC+AGG | - | chr3_2:20721975-20721994 | None:intergenic | 30.0% | |
| TCAATATAAGCAGAAAAACC+AGG | - | chr3_2:20722007-20722026 | None:intergenic | 30.0% | |
| CATCACAAGTGGAAATATAA+AGG | - | chr3_2:20722077-20722096 | None:intergenic | 30.0% | |
| GTAATAATAAGCATCACAAG+TGG | - | chr3_2:20722088-20722107 | None:intergenic | 30.0% | |
| TCCGTTGAAGAAATTATGAA+AGG | + | chr3_2:20722142-20722161 | Msa0398730:CDS | 30.0% | |
| ATGAAATAACCATCTTGTCT+GGG | - | chr3_2:20722323-20722342 | None:intergenic | 30.0% | |
| AATGAAATAACCATCTTGTC+TGG | - | chr3_2:20722324-20722343 | None:intergenic | 30.0% | |
| CACAAGTATTATTAGAAGTC+CGG | - | chr3_2:20722618-20722637 | None:intergenic | 30.0% | |
| ATAATATCACATAGCTTCTG+CGG | + | chr3_2:20722984-20723003 | Msa0398730:exon | 30.0% | |
| !!! | TCAAGTGTTACTTGTAGTTT+TGG | + | chr3_2:20723067-20723086 | Msa0398730:three_prime_UTR | 30.0% |
| ! | TTGGAAATGTAAACCTTTTC+AGG | + | chr3_2:20723086-20723105 | Msa0398730:three_prime_UTR | 30.0% |
| !! | TGTAAACCTTTTCAGGATTA+AGG | + | chr3_2:20723093-20723112 | Msa0398730:three_prime_UTR | 30.0% |
| !! | GTAAACCTTTTCAGGATTAA+GGG | + | chr3_2:20723094-20723113 | Msa0398730:three_prime_UTR | 30.0% |
| AAGGGAGAGAAACTATTTAA+AGG | + | chr3_2:20723112-20723131 | Msa0398730:three_prime_UTR | 30.0% | |
| !!! | TGTTGCTGGGTTTTGTTAAT+TGG | + | chr3_2:20718804-20718823 | Msa0398730:five_prime_UTR | 35.0% |
| CTTCATAAAGACAAGAAGTG+TGG | - | chr3_2:20719033-20719052 | None:intergenic | 35.0% | |
| TTCTTGTCTTTATGAAGCCA+AGG | + | chr3_2:20719036-20719055 | Msa0398730:CDS | 35.0% | |
| AGTTACGAAAACAAAACGAG+AGG | - | chr3_2:20719240-20719259 | None:intergenic | 35.0% | |
| !! | AATTTTCCTTGTTTCAGGGT+TGG | + | chr3_2:20719271-20719290 | Msa0398730:intron | 35.0% |
| TTGATTGTGTTGAGAACTGT+GGG | + | chr3_2:20719328-20719347 | Msa0398730:intron | 35.0% | |
| !!! | ACTGTGGGTTTTGATTTGTT+AGG | + | chr3_2:20719343-20719362 | Msa0398730:intron | 35.0% |
| !!! | CTGTGGGTTTTGATTTGTTA+GGG | + | chr3_2:20719344-20719363 | Msa0398730:intron | 35.0% |
| ! | TTTGTGTGTTTTACTGCAGT+TGG | + | chr3_2:20719368-20719387 | Msa0398730:intron | 35.0% |
| ! | TTGTGTGTTTTACTGCAGTT+GGG | + | chr3_2:20719369-20719388 | Msa0398730:intron | 35.0% |
| TCGATTGATGAAACATACTG+AGG | + | chr3_2:20719411-20719430 | Msa0398730:CDS | 35.0% | |
| CTTGCACTTGATGAGAAATA+TGG | + | chr3_2:20719451-20719470 | Msa0398730:CDS | 35.0% | |
| ! | CGAATGTTTTGTAGAGCTTA+TGG | + | chr3_2:20719659-20719678 | Msa0398730:intron | 35.0% |
| TTTCGTAAGCTCTCCAAAAT+AGG | + | chr3_2:20719722-20719741 | Msa0398730:intron | 35.0% | |
| ACATGATTGGGCGAATTAAT+TGG | + | chr3_2:20720058-20720077 | Msa0398730:intron | 35.0% | |
| ! | TATCCATCTTCTCCAAGTTT+TGG | + | chr3_2:20720125-20720144 | Msa0398730:intron | 35.0% |
| TATCCAAAACTTGGAGAAGA+TGG | - | chr3_2:20720131-20720150 | None:intergenic | 35.0% | |
| GCCATCAAAAGTTTAATAGG+AGG | - | chr3_2:20720206-20720225 | None:intergenic | 35.0% | |
| AATAGGAGGTCAAACACATA+AGG | - | chr3_2:20720249-20720268 | None:intergenic | 35.0% | |
| TCCAAAAGAGTTTGAACACT+GGG | + | chr3_2:20720302-20720321 | Msa0398730:intron | 35.0% | |
| ATCTAGTCAAAGCTTCACAT+AGG | - | chr3_2:20720761-20720780 | None:intergenic | 35.0% | |
| ! | TATGTGAAGCTTTGACTAGA+TGG | + | chr3_2:20720760-20720779 | Msa0398730:intron | 35.0% |
| GGTAAAGTAAGAGGACTTTA+TGG | + | chr3_2:20720890-20720909 | Msa0398730:intron | 35.0% | |
| AAATGTAATGCAGTAGCAAG+AGG | + | chr3_2:20720963-20720982 | Msa0398730:intron | 35.0% | |
| TGAATGTTGACAAGTTTGTC+CGG | - | chr3_2:20721291-20721310 | None:intergenic | 35.0% | |
| CAGCCAATTTGATATAGCTT+TGG | + | chr3_2:20721447-20721466 | Msa0398730:intron | 35.0% | |
| CGTCCAAAGCTATATCAAAT+TGG | - | chr3_2:20721453-20721472 | None:intergenic | 35.0% | |
| ! | TTGAAATACTCCAGTCTTGT+GGG | + | chr3_2:20721665-20721684 | Msa0398730:intron | 35.0% |
| TTGGAACTTTCTATCAACTG+GGG | - | chr3_2:20721937-20721956 | None:intergenic | 35.0% | |
| TAAGCAGAAAAACCAGGTAA+AGG | - | chr3_2:20722001-20722020 | None:intergenic | 35.0% | |
| TATCAAAAACACAGCTGAAG+GGG | - | chr3_2:20722051-20722070 | None:intergenic | 35.0% | |
| GTATCAAAAACACAGCTGAA+GGG | - | chr3_2:20722052-20722071 | None:intergenic | 35.0% | |
| TGTATCAAAAACACAGCTGA+AGG | - | chr3_2:20722053-20722072 | None:intergenic | 35.0% | |
| !! | TTATTGTACAAGAGCATCAC+TGG | - | chr3_2:20722196-20722215 | None:intergenic | 35.0% |
| !!! | TATGCATGTGTTGTTTTGCA+AGG | + | chr3_2:20722350-20722369 | Msa0398730:intron | 35.0% |
| !!! | ATGCATGTGTTGTTTTGCAA+GGG | + | chr3_2:20722351-20722370 | Msa0398730:intron | 35.0% |
| ! | CATAAGTGTCTTAGCTCTTA+AGG | + | chr3_2:20722382-20722401 | Msa0398730:CDS | 35.0% |
| TGCAAGTGCAACAATTAAGT+CGG | - | chr3_2:20722435-20722454 | None:intergenic | 35.0% | |
| ACATCCGTATTTCCATAACA+GGG | - | chr3_2:20722458-20722477 | None:intergenic | 35.0% | |
| AACATCCGTATTTCCATAAC+AGG | - | chr3_2:20722459-20722478 | None:intergenic | 35.0% | |
| TGTTATGGAAATACGGATGT+TGG | + | chr3_2:20722458-20722477 | Msa0398730:CDS | 35.0% | |
| !! | AGAGTTGTTTTGCAAAATGC+TGG | + | chr3_2:20722482-20722501 | Msa0398730:CDS | 35.0% |
| TTAGCATGGAACAATAACTC+TGG | - | chr3_2:20722686-20722705 | None:intergenic | 35.0% | |
| TTGTTCCATGCTAACATTGA+AGG | + | chr3_2:20722692-20722711 | Msa0398730:CDS | 35.0% | |
| CACAAATACTTGACTTTCTC+AGG | + | chr3_2:20722738-20722757 | Msa0398730:CDS | 35.0% | |
| AACTATCTATTTCATGGTGC+AGG | + | chr3_2:20722867-20722886 | Msa0398730:intron | 35.0% | |
| CTTGGACATGATAAGAAGAA+AGG | - | chr3_2:20722922-20722941 | None:intergenic | 35.0% | |
| ! | AGAATGCTTGTTACAAATGC+AGG | + | chr3_2:20723011-20723030 | Msa0398730:three_prime_UTR | 35.0% |
| ! | GAATGCTTGTTACAAATGCA+GGG | + | chr3_2:20723012-20723031 | Msa0398730:three_prime_UTR | 35.0% |
| TCCTTCATCGTAAGGAGAAA+CGG | - | chr3_2:20718993-20719012 | None:intergenic | 40.0% | |
| ACTTTCTCTCCTTCATCGTA+AGG | - | chr3_2:20719001-20719020 | None:intergenic | 40.0% | |
| TTTCTTCCAACCCTGAAACA+AGG | - | chr3_2:20719280-20719299 | None:intergenic | 40.0% | |
| GTTGATTGTGTTGAGAACTG+TGG | + | chr3_2:20719327-20719346 | Msa0398730:intron | 40.0% | |
| TTTACTGCAGTTGGGATGAA+TGG | + | chr3_2:20719377-20719396 | Msa0398730:intron | 40.0% | |
| TTACTGCAGTTGGGATGAAT+GGG | + | chr3_2:20719378-20719397 | Msa0398730:intron | 40.0% | |
| TATCTGACCATTCGAACTCT+TGG | - | chr3_2:20719512-20719531 | None:intergenic | 40.0% | |
| CCTGTTTGGATAAACAGCTA+AGG | - | chr3_2:20719896-20719915 | None:intergenic | 40.0% | |
| CCTTAGCTGTTTATCCAAAC+AGG | + | chr3_2:20719893-20719912 | Msa0398730:intron | 40.0% | |
| CTTCCATGTTCAACTTGTAG+AGG | + | chr3_2:20719940-20719959 | Msa0398730:intron | 40.0% | |
| GCAAGACATTCACATTGTTC+AGG | + | chr3_2:20720008-20720027 | Msa0398730:intron | 40.0% | |
| CATTCACATTGTTCAGGAAC+TGG | + | chr3_2:20720014-20720033 | Msa0398730:intron | 40.0% | |
| TGGGCGAATTAATTGGTACT+TGG | + | chr3_2:20720065-20720084 | Msa0398730:intron | 40.0% | |
| GTCCAAAAGAGTTTGAACAC+TGG | + | chr3_2:20720301-20720320 | Msa0398730:intron | 40.0% | |
| CCAAAAGAGTTTGAACACTG+GGG | + | chr3_2:20720303-20720322 | Msa0398730:intron | 40.0% | |
| TTGATTTCGTCCACTCTAGT+TGG | - | chr3_2:20720430-20720449 | None:intergenic | 40.0% | |
| ! | GATAAGGATGTTATGATGGG+TGG | + | chr3_2:20720598-20720617 | Msa0398730:intron | 40.0% |
| ACACAAGTCAAGATAGGCTT+AGG | + | chr3_2:20720631-20720650 | Msa0398730:intron | 40.0% | |
| GAGGATAGTCCATATCTAGA+GGG | + | chr3_2:20720782-20720801 | Msa0398730:intron | 40.0% | |
| AGGATAGTCCATATCTAGAG+GGG | + | chr3_2:20720783-20720802 | Msa0398730:intron | 40.0% | |
| GTGAGTTTAGATCAGAAGTG+TGG | - | chr3_2:20720835-20720854 | None:intergenic | 40.0% | |
| CATGAACTTCAAAGACGCAT+GGG | - | chr3_2:20721077-20721096 | None:intergenic | 40.0% | |
| ACATGAACTTCAAAGACGCA+TGG | - | chr3_2:20721078-20721097 | None:intergenic | 40.0% | |
| ! | CATGTTTTGTCCCTTGTATG+AGG | + | chr3_2:20721171-20721190 | Msa0398730:intron | 40.0% |
| GTTTATTACTCATCTCGGCA+AGG | + | chr3_2:20721353-20721372 | Msa0398730:CDS | 40.0% | |
| GTTGAAATACTCCAGTCTTG+TGG | + | chr3_2:20721664-20721683 | Msa0398730:intron | 40.0% | |
| ACACTTATTTCCCACAAGAC+TGG | - | chr3_2:20721678-20721697 | None:intergenic | 40.0% | |
| CAAAAACAGATTTCAGGCAC+AGG | - | chr3_2:20721969-20721988 | None:intergenic | 40.0% | |
| TTGTGTTCATGTCCTTTACC+TGG | + | chr3_2:20721986-20722005 | Msa0398730:intron | 40.0% | |
| TATCGTTTGGACAAGCTTCT+TGG | - | chr3_2:20722234-20722253 | None:intergenic | 40.0% | |
| ATCGCTCCTTCTGCTATATA+TGG | + | chr3_2:20722253-20722272 | Msa0398730:CDS | 40.0% | |
| TCAGCACCATATATAGCAGA+AGG | - | chr3_2:20722262-20722281 | None:intergenic | 40.0% | |
| ! | GAGCATTTGTTACGTCTCTT+TGG | + | chr3_2:20722280-20722299 | Msa0398730:CDS | 40.0% |
| ATAACCATCTTGTCTGGGAA+GGG | - | chr3_2:20722318-20722337 | None:intergenic | 40.0% | |
| AATAACCATCTTGTCTGGGA+AGG | - | chr3_2:20722319-20722338 | None:intergenic | 40.0% | |
| TGCACCCTGTTATGGAAATA+CGG | + | chr3_2:20722451-20722470 | Msa0398730:CDS | 40.0% | |
| TTTGCAAAATGCTGGCCATT+TGG | + | chr3_2:20722490-20722509 | Msa0398730:CDS | 40.0% | |
| TAGCAATAAACCCATGTGTG+AGG | - | chr3_2:20722522-20722541 | None:intergenic | 40.0% | |
| GAAAGTCAAGTATTTGTGCC+TGG | - | chr3_2:20722736-20722755 | None:intergenic | 40.0% | |
| TGCTGTTCTCAACATCTTCT+TGG | - | chr3_2:20722940-20722959 | None:intergenic | 40.0% | |
| TCTCTCCCTTAATCCTGAAA+AGG | - | chr3_2:20723102-20723121 | None:intergenic | 40.0% | |
| !! | TAGGAGGTGTTCTTTGTTGC+TGG | + | chr3_2:20718790-20718809 | Msa0398730:five_prime_UTR | 45.0% |
| !! | AGGAGGTGTTCTTTGTTGCT+GGG | + | chr3_2:20718791-20718810 | Msa0398730:five_prime_UTR | 45.0% |
| AACCAAAACGCAGTAGCACT+AGG | + | chr3_2:20718865-20718884 | Msa0398730:five_prime_UTR | 45.0% | |
| TCCGTTTCTCCTTACGATGA+AGG | + | chr3_2:20718989-20719008 | Msa0398730:CDS | 45.0% | |
| ACGAGAAAGGAAGAAGACCT+TGG | - | chr3_2:20719056-20719075 | None:intergenic | 45.0% | |
| ! | ACGCCTCTACAAGTTGAACA+TGG | - | chr3_2:20719946-20719965 | None:intergenic | 45.0% |
| ! | CCCCAGTGTTCAAACTCTTT+TGG | - | chr3_2:20720306-20720325 | None:intergenic | 45.0% |
| TCCATAGAGTCCAACTAGAG+TGG | + | chr3_2:20720417-20720436 | Msa0398730:intron | 45.0% | |
| TCCACTCTAGTTGGACTCTA+TGG | - | chr3_2:20720421-20720440 | None:intergenic | 45.0% | |
| TGTTGTATGGGAGTCAGTGT+TGG | + | chr3_2:20720534-20720553 | Msa0398730:intron | 45.0% | |
| GTTGTATGGGAGTCAGTGTT+GGG | + | chr3_2:20720535-20720554 | Msa0398730:intron | 45.0% | |
| !! | AAGGATGTTATGATGGGTGG+TGG | + | chr3_2:20720601-20720620 | Msa0398730:intron | 45.0% |
| GGTGGTACACAAGTCAAGAT+AGG | + | chr3_2:20720625-20720644 | Msa0398730:intron | 45.0% | |
| ! | GTGAAGCTTTGACTAGATGG+AGG | + | chr3_2:20720763-20720782 | Msa0398730:intron | 45.0% |
| GGAGGATAGTCCATATCTAG+AGG | + | chr3_2:20720781-20720800 | Msa0398730:intron | 45.0% | |
| GGATAGTCCATATCTAGAGG+GGG | + | chr3_2:20720784-20720803 | Msa0398730:intron | 45.0% | |
| ! | TCAGAAGTGTGGTATGTGCT+AGG | - | chr3_2:20720824-20720843 | None:intergenic | 45.0% |
| TTTGTCCCTTGTATGAGGTG+AGG | + | chr3_2:20721176-20721195 | Msa0398730:intron | 45.0% | |
| TTGTCCCTTGTATGAGGTGA+GGG | + | chr3_2:20721177-20721196 | Msa0398730:intron | 45.0% | |
| CATTCCCTCACCTCATACAA+GGG | - | chr3_2:20721184-20721203 | None:intergenic | 45.0% | |
| GGAAAAACTTGCGGTTCTTC+CGG | + | chr3_2:20721269-20721288 | Msa0398730:intron | 45.0% | |
| ATCTCGGCAAGGTAGCAATA+TGG | + | chr3_2:20721364-20721383 | Msa0398730:intron | 45.0% | |
| ! | TCGTTCACATTAGGAGTACG+AGG | - | chr3_2:20721559-20721578 | None:intergenic | 45.0% |
| TGGATCGTAAGTTCATGCTG+AGG | + | chr3_2:20721618-20721637 | Msa0398730:intron | 45.0% | |
| CAGGCACAGGCTAATCATAT+TGG | - | chr3_2:20721956-20721975 | None:intergenic | 45.0% | |
| ! | TGTGTGAGGCTGATTCCAAA+TGG | - | chr3_2:20722508-20722527 | None:intergenic | 45.0% |
| ! | TTTGGAATCAGCCTCACACA+TGG | + | chr3_2:20722508-20722527 | Msa0398730:CDS | 45.0% |
| TTGGAATCAGCCTCACACAT+GGG | + | chr3_2:20722509-20722528 | Msa0398730:CDS | 45.0% | |
| TGTCGCCTTCAATGTTAGCA+TGG | - | chr3_2:20722700-20722719 | None:intergenic | 45.0% | |
| CGACACATTGATAGAACTCC+AGG | + | chr3_2:20722715-20722734 | Msa0398730:CDS | 45.0% | |
| !! | AAATAATTCAATAAATTATA+TGG | - | chr3_2:20719920-20719939 | None:intergenic | 5.0% |
| !!! | AATTATTATATATATCATTT+TGG | + | chr3_2:20721704-20721723 | Msa0398730:intron | 5.0% |
| !! | CACCTAGTGCTACTGCGTTT+TGG | - | chr3_2:20718870-20718889 | None:intergenic | 50.0% |
| TGCAGTTGGGATGAATGGGT+TGG | + | chr3_2:20719382-20719401 | Msa0398730:intron | 50.0% | |
| AAGAATGCCAGAAAGCCTCG+TGG | + | chr3_2:20719481-20719500 | Msa0398730:CDS | 50.0% | |
| GGATCGTCCAAGAGTTCGAA+TGG | + | chr3_2:20719502-20719521 | Msa0398730:CDS | 50.0% | |
| !! | GATGTTATGATGGGTGGTGG+TGG | + | chr3_2:20720604-20720623 | Msa0398730:intron | 50.0% |
| ! | GTTGCATGCTCGAAGTACCT+AGG | - | chr3_2:20720719-20720738 | None:intergenic | 50.0% |
| GAGCATGCAACGAGAAAGCT+TGG | + | chr3_2:20720728-20720747 | Msa0398730:intron | 50.0% | |
| TAGTGTGCCCCCTCTAGATA+TGG | - | chr3_2:20720794-20720813 | None:intergenic | 50.0% | |
| CCATTCCCTCACCTCATACA+AGG | - | chr3_2:20721185-20721204 | None:intergenic | 50.0% | |
| CCTTGTATGAGGTGAGGGAA+TGG | + | chr3_2:20721182-20721201 | Msa0398730:intron | 50.0% | |
| GCAGAAGGAGCGATATCGTT+TGG | - | chr3_2:20722247-20722266 | None:intergenic | 50.0% | |
| TTAGCCCTTCCCAGACAAGA+TGG | + | chr3_2:20722311-20722330 | Msa0398730:intron | 50.0% | |
| GTTGCACTTGCACCCTGTTA+TGG | + | chr3_2:20722443-20722462 | Msa0398730:CDS | 50.0% | |
| GAACTCTTGGACGATCCACG+AGG | - | chr3_2:20719499-20719518 | None:intergenic | 55.0% | |
| !! | GTTATGATGGGTGGTGGTGG+TGG | + | chr3_2:20720607-20720626 | Msa0398730:intron | 55.0% |
| GGACGATCCACGAGGCTTTC+TGG | - | chr3_2:20719491-20719510 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 20718776 | 20723198 | 20718776 | ID=Msa0398730;Name=Msa0398730 |
| chr3_2 | mRNA | 20718776 | 20723198 | 20718776 | ID=Msa0398730-mRNA-1;Parent=Msa0398730;Name=Msa0398730-mRNA-1;_AED=0.43;_eAED=0.43;_QI=129|0.55|0.8|0.9|1|1|10|201|350 |
| chr3_2 | exon | 20718776 | 20719057 | 20718776 | ID=Msa0398730-mRNA-1:exon:4518;Parent=Msa0398730-mRNA-1 |
| chr3_2 | exon | 20719288 | 20719301 | 20719288 | ID=Msa0398730-mRNA-1:exon:4519;Parent=Msa0398730-mRNA-1 |
| chr3_2 | exon | 20719387 | 20719523 | 20719387 | ID=Msa0398730-mRNA-1:exon:4520;Parent=Msa0398730-mRNA-1 |
| chr3_2 | exon | 20720976 | 20721016 | 20720976 | ID=Msa0398730-mRNA-1:exon:4521;Parent=Msa0398730-mRNA-1 |
| chr3_2 | exon | 20721270 | 20721374 | 20721270 | ID=Msa0398730-mRNA-1:exon:4522;Parent=Msa0398730-mRNA-1 |
| chr3_2 | exon | 20721544 | 20721623 | 20721544 | ID=Msa0398730-mRNA-1:exon:4523;Parent=Msa0398730-mRNA-1 |
| chr3_2 | exon | 20722132 | 20722301 | 20722132 | ID=Msa0398730-mRNA-1:exon:4524;Parent=Msa0398730-mRNA-1 |
| chr3_2 | exon | 20722372 | 20722530 | 20722372 | ID=Msa0398730-mRNA-1:exon:4525;Parent=Msa0398730-mRNA-1 |
| chr3_2 | exon | 20722675 | 20722759 | 20722675 | ID=Msa0398730-mRNA-1:exon:4526;Parent=Msa0398730-mRNA-1 |
| chr3_2 | exon | 20722889 | 20723198 | 20722889 | ID=Msa0398730-mRNA-1:exon:4527;Parent=Msa0398730-mRNA-1 |
| chr3_2 | five_prime_UTR | 20718776 | 20718904 | 20718776 | ID=Msa0398730-mRNA-1:five_prime_utr;Parent=Msa0398730-mRNA-1 |
| chr3_2 | CDS | 20718905 | 20719057 | 20718905 | ID=Msa0398730-mRNA-1:cds;Parent=Msa0398730-mRNA-1 |
| chr3_2 | CDS | 20719288 | 20719301 | 20719288 | ID=Msa0398730-mRNA-1:cds;Parent=Msa0398730-mRNA-1 |
| chr3_2 | CDS | 20719387 | 20719523 | 20719387 | ID=Msa0398730-mRNA-1:cds;Parent=Msa0398730-mRNA-1 |
| chr3_2 | CDS | 20720976 | 20721016 | 20720976 | ID=Msa0398730-mRNA-1:cds;Parent=Msa0398730-mRNA-1 |
| chr3_2 | CDS | 20721270 | 20721374 | 20721270 | ID=Msa0398730-mRNA-1:cds;Parent=Msa0398730-mRNA-1 |
| chr3_2 | CDS | 20721544 | 20721623 | 20721544 | ID=Msa0398730-mRNA-1:cds;Parent=Msa0398730-mRNA-1 |
| chr3_2 | CDS | 20722132 | 20722301 | 20722132 | ID=Msa0398730-mRNA-1:cds;Parent=Msa0398730-mRNA-1 |
| chr3_2 | CDS | 20722372 | 20722530 | 20722372 | ID=Msa0398730-mRNA-1:cds;Parent=Msa0398730-mRNA-1 |
| chr3_2 | CDS | 20722675 | 20722759 | 20722675 | ID=Msa0398730-mRNA-1:cds;Parent=Msa0398730-mRNA-1 |
| chr3_2 | CDS | 20722889 | 20722997 | 20722889 | ID=Msa0398730-mRNA-1:cds;Parent=Msa0398730-mRNA-1 |
| chr3_2 | three_prime_UTR | 20722998 | 20723198 | 20722998 | ID=Msa0398730-mRNA-1:three_prime_utr;Parent=Msa0398730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
