Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030430 | sp|Q8L8Q8|Y5486_ARATH | 83.333 | 120 | 20 | 0 | 1 | 120 | 1 | 120 | 1.42e-73 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa0030430 | 0.802586 | 5.230153e-49 | -8.615850e-47 |
| Msa0027540 | Msa0030430 | 0.811675 | 6.219036e-51 | -8.615850e-47 |
| Msa0030380 | Msa0030430 | 0.804418 | 2.181022e-49 | -8.615850e-47 |
| Msa0030430 | Msa0032120 | 0.808179 | 3.516175e-50 | -8.615850e-47 |
| Msa0030430 | Msa0038350 | -0.800068 | 1.713925e-48 | -8.615850e-47 |
| Msa0030430 | Msa0044710 | 0.807872 | 4.087550e-50 | -8.615850e-47 |
| Msa0030430 | Msa0046750 | 0.814948 | 1.187708e-51 | -8.615850e-47 |
| Msa0030430 | Msa0075310 | 0.816213 | 6.210426e-52 | -8.615850e-47 |
| Msa0030430 | Msa0090590 | 0.800644 | 1.308392e-48 | -8.615850e-47 |
| Msa0030430 | Msa0103000 | 0.802075 | 6.661799e-49 | -8.615850e-47 |
| Msa0030430 | Msa0120330 | 0.812302 | 4.540419e-51 | -8.615850e-47 |
| Msa0030430 | Msa0140570 | 0.807410 | 5.124729e-50 | -8.615850e-47 |
| Msa0030430 | Msa0143430 | 0.814449 | 1.532218e-51 | -8.615850e-47 |
| Msa0030430 | Msa0145670 | 0.800255 | 1.570593e-48 | -8.615850e-47 |
| Msa0030430 | Msa0168100 | 0.825323 | 4.991138e-54 | -8.615850e-47 |
| Msa0030430 | Msa0172350 | 0.805143 | 1.538705e-49 | -8.615850e-47 |
| Msa0030430 | Msa0173740 | 0.806325 | 8.689768e-50 | -8.615850e-47 |
| Msa0030430 | Msa0173820 | 0.812694 | 3.726058e-51 | -8.615850e-47 |
| Msa0030430 | Msa0173830 | 0.817237 | 3.659028e-52 | -8.615850e-47 |
| Msa0030430 | Msa0183620 | 0.807701 | 4.443827e-50 | -8.615850e-47 |
| Msa0030430 | Msa0185700 | 0.802071 | 6.674625e-49 | -8.615850e-47 |
| Msa0030430 | Msa0193120 | 0.816024 | 6.843557e-52 | -8.615850e-47 |
| Msa0030430 | Msa0207000 | 0.809690 | 1.670233e-50 | -8.615850e-47 |
| Msa0030430 | Msa0267760 | 0.810668 | 1.028212e-50 | -8.615850e-47 |
| Msa0030430 | Msa0308830 | 0.813887 | 2.038646e-51 | -8.615850e-47 |
| Msa0030430 | Msa0349060 | 0.804037 | 2.618039e-49 | -8.615850e-47 |
| Msa0030430 | Msa0358170 | 0.812097 | 5.033117e-51 | -8.615850e-47 |
| Msa0030430 | Msa0376510 | 0.826919 | 2.082973e-54 | -8.615850e-47 |
| Msa0030430 | Msa0378080 | 0.801409 | 9.128384e-49 | -8.615850e-47 |
| Msa0030430 | Msa0419820 | 0.800851 | 1.187048e-48 | -8.615850e-47 |
| Msa0030430 | Msa0425010 | 0.808750 | 2.656531e-50 | -8.615850e-47 |
| Msa0030430 | Msa0425050 | 0.828284 | 9.790831e-55 | -8.615850e-47 |
| Msa0030430 | Msa0425940 | 0.823854 | 1.107119e-53 | -8.615850e-47 |
| Msa0030430 | Msa0426020 | 0.827926 | 1.194627e-54 | -8.615850e-47 |
| Msa0030430 | Msa0426160 | 0.819894 | 9.139880e-53 | -8.615850e-47 |
| Msa0030430 | Msa0431430 | 0.817597 | 3.036607e-52 | -8.615850e-47 |
| Msa0030430 | Msa0443500 | 0.808503 | 2.998988e-50 | -8.615850e-47 |
| Msa0030430 | Msa0470180 | 0.800682 | 1.285150e-48 | -8.615850e-47 |
| Msa0030430 | Msa0480320 | 0.814022 | 1.903736e-51 | -8.615850e-47 |
| Msa0030430 | Msa0516320 | 0.810663 | 1.030471e-50 | -8.615850e-47 |
| Msa0030430 | Msa0516450 | 0.801785 | 7.644488e-49 | -8.615850e-47 |
| Msa0030430 | Msa0526710 | 0.804187 | 2.436759e-49 | -8.615850e-47 |
| Msa0030430 | Msa0538700 | 0.803512 | 3.365528e-49 | -8.615850e-47 |
| Msa0030430 | Msa0546840 | 0.811756 | 5.971034e-51 | -8.615850e-47 |
| Msa0030430 | Msa0589150 | 0.803546 | 3.310330e-49 | -8.615850e-47 |
| Msa0030430 | Msa0590680 | 0.816796 | 4.597879e-52 | -8.615850e-47 |
| Msa0030430 | Msa0590800 | 0.800200 | 1.611255e-48 | -8.615850e-47 |
| Msa0030430 | Msa0591770 | 0.800307 | 1.532792e-48 | -8.615850e-47 |
| Msa0030430 | Msa0607200 | 0.809139 | 2.193316e-50 | -8.615850e-47 |
| Msa0030430 | Msa0618010 | 0.802298 | 5.995545e-49 | -8.615850e-47 |
| Msa0030430 | Msa0621120 | 0.804429 | 2.169922e-49 | -8.615850e-47 |
| Msa0030430 | Msa0643220 | 0.800745 | 1.247707e-48 | -8.615850e-47 |
| Msa0030430 | Msa0712980 | 0.807759 | 4.319829e-50 | -8.615850e-47 |
| Msa0030430 | Msa0734660 | 0.817741 | 2.816998e-52 | -8.615850e-47 |
| Msa0030430 | Msa0751070 | 0.803715 | 3.053495e-49 | -8.615850e-47 |
| Msa0030430 | Msa0776220 | 0.810243 | 1.270007e-50 | -8.615850e-47 |
| Msa0030430 | Msa0785560 | 0.831925 | 1.266220e-55 | -8.615850e-47 |
| Msa0030430 | Msa0787750 | 0.812856 | 3.434354e-51 | -8.615850e-47 |
| Msa0030430 | Msa0789570 | 0.808352 | 3.230544e-50 | -8.615850e-47 |
| Msa0030430 | Msa0813670 | 0.805357 | 1.388251e-49 | -8.615850e-47 |
| Msa0030430 | Msa0813720 | 0.811332 | 7.381747e-51 | -8.615850e-47 |
| Msa0030430 | Msa0824680 | 0.807874 | 4.084304e-50 | -8.615850e-47 |
| Msa0030430 | Msa0850960 | 0.808537 | 2.950569e-50 | -8.615850e-47 |
| Msa0030430 | Msa0854120 | 0.803266 | 3.784581e-49 | -8.615850e-47 |
| Msa0030430 | Msa0936270 | 0.803465 | 3.442153e-49 | -8.615850e-47 |
| Msa0030430 | Msa0980500 | 0.811094 | 8.313521e-51 | -8.615850e-47 |
| Msa0030430 | Msa1007610 | -0.804905 | 1.725612e-49 | -8.615850e-47 |
| Msa0030430 | Msa1018790 | 0.809021 | 2.324407e-50 | -8.615850e-47 |
| Msa0030430 | Msa1040830 | 0.802078 | 6.654753e-49 | -8.615850e-47 |
| Msa0030430 | Msa1055280 | 0.802855 | 4.602315e-49 | -8.615850e-47 |
| Msa0030430 | Msa1082700 | 0.817115 | 3.897947e-52 | -8.615850e-47 |
| Msa0030430 | Msa1111630 | 0.823542 | 1.309760e-53 | -8.615850e-47 |
| Msa0030430 | Msa1125760 | 0.812277 | 4.596820e-51 | -8.615850e-47 |
| Msa0030430 | Msa1139810 | 0.811059 | 8.462026e-51 | -8.615850e-47 |
| Msa0030430 | Msa1167170 | 0.824746 | 6.830173e-54 | -8.615850e-47 |
| Msa0030430 | Msa1171690 | 0.836473 | 9.167597e-57 | -8.615850e-47 |
| Msa0030430 | Msa1187840 | 0.806465 | 8.118983e-50 | -8.615850e-47 |
| Msa0030430 | Msa1188940 | 0.806657 | 7.396804e-50 | -8.615850e-47 |
| Msa0030430 | Msa1193070 | 0.808947 | 2.411491e-50 | -8.615850e-47 |
| Msa0030430 | Msa1211090 | 0.807877 | 4.077721e-50 | -8.615850e-47 |
| Msa0030430 | Msa1214270 | 0.808568 | 2.905343e-50 | -8.615850e-47 |
| Msa0030430 | Msa1226620 | 0.816362 | 5.750231e-52 | -8.615850e-47 |
| Msa0030430 | Msa1249870 | 0.804389 | 2.211945e-49 | -8.615850e-47 |
| Msa0030430 | Msa1281180 | 0.801481 | 8.823235e-49 | -8.615850e-47 |
| Msa0030430 | Msa1284520 | 0.808116 | 3.627699e-50 | -8.615850e-47 |
| Msa0030430 | Msa1323190 | 0.811692 | 6.164003e-51 | -8.615850e-47 |
| Msa0030430 | Msa1324000 | 0.805062 | 1.600356e-49 | -8.615850e-47 |
| Msa0030430 | Msa1337090 | 0.800418 | 1.454810e-48 | -8.615850e-47 |
| Msa0030430 | Msa1398480 | 0.801676 | 8.047397e-49 | -8.615850e-47 |
| Msa0030430 | Msa1417870 | 0.804611 | 1.988250e-49 | -8.615850e-47 |
| Msa0030430 | Msa1427760 | 0.811376 | 7.220865e-51 | -8.615850e-47 |
| Msa0030430 | Msa1429250 | 0.817394 | 3.374447e-52 | -8.615850e-47 |
| Msa0030430 | Msa1449880 | 0.827610 | 1.422951e-54 | -8.615850e-47 |
| Msa0030430 | Msa1453620 | 0.809072 | 2.266349e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030430 | MtrunA17_Chr1g0186311 | 100.000 | 126 | 0 | 0 | 1 | 126 | 1 | 126 | 3.02e-90 | 256 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030430 | AT5G64816.2 | 83.333 | 120 | 20 | 0 | 1 | 120 | 1 | 120 | 1.44e-74 | 218 |
| Msa0030430 | AT5G64816.4 | 83.333 | 120 | 20 | 0 | 1 | 120 | 1 | 120 | 1.44e-74 | 218 |
| Msa0030430 | AT5G64816.1 | 83.333 | 120 | 20 | 0 | 1 | 120 | 1 | 120 | 1.44e-74 | 218 |
| Msa0030430 | AT5G64816.3 | 83.333 | 120 | 20 | 0 | 1 | 120 | 1 | 120 | 1.44e-74 | 218 |
Find 32 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATATTTGGTGGTCACTTT+TGG | 0.138181 | 1_1:+56809145 | Msa0030430:CDS |
| TTCAAAGAGGATGTTGAAAA+AGG | 0.272946 | 1_1:+56809304 | Msa0030430:CDS |
| ACCAACATCAAGTACCTAAT+TGG | 0.307555 | 1_1:+56809432 | Msa0030430:CDS |
| GATACTTGTGTTACTGTTTG+TGG | 0.347747 | 1_1:+56809356 | Msa0030430:CDS |
| GCAGTCCCTGTCGTTGTTGC+AGG | 0.348680 | 1_1:+56809173 | Msa0030430:CDS |
| TATCAGAGATGGGAGATATT+TGG | 0.353189 | 1_1:+56809132 | Msa0030430:exon |
| ATTGGAATGACACATGTCTT+AGG | 0.381625 | 1_1:+56809450 | Msa0030430:CDS |
| AGACATGTGTCATTCCAATT+AGG | 0.386451 | 1_1:-56809446 | None:intergenic |
| GTAACACAAGTATCAGGAAT+TGG | 0.406394 | 1_1:-56809347 | None:intergenic |
| CAAACAGTAACACAAGTATC+AGG | 0.430522 | 1_1:-56809353 | None:intergenic |
| TTCTCTTTCTCCGCCACCGC+CGG | 0.441914 | 1_1:+56808090 | Msa0030430:five_prime_UTR |
| GCTTGTCCTGCAACAACGAC+AGG | 0.451940 | 1_1:-56809179 | None:intergenic |
| TATATAAATACGAAGGTAAA+GGG | 0.466273 | 1_1:+56808019 | None:intergenic |
| TCCAATTAGGTACTTGATGT+TGG | 0.474351 | 1_1:-56809433 | None:intergenic |
| AAGCATTTAGAGTTAAGAAA+AGG | 0.483524 | 1_1:+56809198 | Msa0030430:CDS |
| CTATATAAATACGAAGGTAA+AGG | 0.489752 | 1_1:+56808018 | None:intergenic |
| TGCTGAAGCTTGTGCTCGTA+CGG | 0.492373 | 1_1:+56809400 | Msa0030430:CDS |
| GTGAAACTAACCGGCGGTGG+CGG | 0.523447 | 1_1:-56808100 | None:intergenic |
| AAGTTGTGTAGTATCAGAGA+TGG | 0.527208 | 1_1:+56809121 | Msa0030430:intron |
| AGCAAAGGTTGAAGAGTGCA+AGG | 0.529370 | 1_1:+56809231 | Msa0030430:CDS |
| AGAGTGCAAGGGGAAGAGAA+AGG | 0.552353 | 1_1:+56809243 | Msa0030430:CDS |
| AAAGGAATGCAGAAGAGCAA+AGG | 0.565930 | 1_1:+56809216 | Msa0030430:CDS |
| CAGAGATGGGAGATATTTGG+TGG | 0.589138 | 1_1:+56809135 | Msa0030430:exon |
| GGCGGTGGCGGAGAAAGAGA+AGG | 0.591461 | 1_1:-56808088 | None:intergenic |
| CAAAGGTTGAAGAGTGCAAG+GGG | 0.608201 | 1_1:+56809233 | Msa0030430:CDS |
| GCAAAGGTTGAAGAGTGCAA+GGG | 0.610878 | 1_1:+56809232 | Msa0030430:CDS |
| AGTTGTGTAGTATCAGAGAT+GGG | 0.617867 | 1_1:+56809122 | Msa0030430:intron |
| CTTGTCCTGCAACAACGACA+GGG | 0.623317 | 1_1:-56809178 | None:intergenic |
| GAAGTGAAACTAACCGGCGG+TGG | 0.626939 | 1_1:-56808103 | None:intergenic |
| GGAATGACACATGTCTTAGG+AGG | 0.635618 | 1_1:+56809453 | Msa0030430:CDS |
| AAAGGGTCTGCACTTCAAAG+AGG | 0.655293 | 1_1:+56809291 | Msa0030430:CDS |
| GGTGGCGGAGAAAGAGAAGG+CGG | 0.715233 | 1_1:-56808085 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAAATTAAGAGAAAAATT+AGG | - | chr1_1:56808210-56808229 | None:intergenic | 15.0% |
| !!! | TTAAATGTTAAATTAACTTG+TGG | + | chr1_1:56808316-56808335 | Msa0030430:intron | 15.0% |
| !!! | TAAATGTTAAATTAACTTGT+GGG | + | chr1_1:56808317-56808336 | Msa0030430:intron | 15.0% |
| !!! | TGTTTTTTTTTTTGTTGAAA+TGG | + | chr1_1:56808341-56808360 | Msa0030430:intron | 15.0% |
| !! | TTATATAGTTTAAGGAATAA+AGG | + | chr1_1:56808525-56808544 | Msa0030430:intron | 15.0% |
| !! | TATATAGTTTAAGGAATAAA+GGG | + | chr1_1:56808526-56808545 | Msa0030430:intron | 15.0% |
| !! | ATATTTAATGTCAATATTGA+GGG | + | chr1_1:56808743-56808762 | Msa0030430:intron | 15.0% |
| !! | TTAATGATAAGAAACAATTT+GGG | - | chr1_1:56808892-56808911 | None:intergenic | 15.0% |
| !! | ATTAATGATAAGAAACAATT+TGG | - | chr1_1:56808893-56808912 | None:intergenic | 15.0% |
| !! | TTTCTTATCATTAATTAAAG+TGG | + | chr1_1:56808898-56808917 | Msa0030430:intron | 15.0% |
| !! | TGAAAATTAAGAGAAAAATT+AGG | - | chr1_1:56808210-56808229 | None:intergenic | 15.0% |
| !!! | TTAAATGTTAAATTAACTTG+TGG | + | chr1_1:56808316-56808335 | Msa0030430:intron | 15.0% |
| !!! | TAAATGTTAAATTAACTTGT+GGG | + | chr1_1:56808317-56808336 | Msa0030430:intron | 15.0% |
| !!! | TGTTTTTTTTTTTGTTGAAA+TGG | + | chr1_1:56808341-56808360 | Msa0030430:intron | 15.0% |
| !! | TTATATAGTTTAAGGAATAA+AGG | + | chr1_1:56808525-56808544 | Msa0030430:intron | 15.0% |
| !! | TATATAGTTTAAGGAATAAA+GGG | + | chr1_1:56808526-56808545 | Msa0030430:intron | 15.0% |
| !! | ATATTTAATGTCAATATTGA+GGG | + | chr1_1:56808743-56808762 | Msa0030430:intron | 15.0% |
| !! | TTAATGATAAGAAACAATTT+GGG | - | chr1_1:56808892-56808911 | None:intergenic | 15.0% |
| !! | ATTAATGATAAGAAACAATT+TGG | - | chr1_1:56808893-56808912 | None:intergenic | 15.0% |
| !! | TTTCTTATCATTAATTAAAG+TGG | + | chr1_1:56808898-56808917 | Msa0030430:intron | 15.0% |
| !!! | CATTTAAAGCATTTATTCAT+AGG | - | chr1_1:56808303-56808322 | None:intergenic | 20.0% |
| !!! | AAATGTTAAATTAACTTGTG+GGG | + | chr1_1:56808318-56808337 | Msa0030430:intron | 20.0% |
| !! | ATATAGTTTAAGGAATAAAG+GGG | + | chr1_1:56808527-56808546 | Msa0030430:intron | 20.0% |
| !!! | TATTTTGAAATTTCGATACT+TGG | - | chr1_1:56808603-56808622 | None:intergenic | 20.0% |
| !! | CATATTTAATGTCAATATTG+AGG | + | chr1_1:56808742-56808761 | Msa0030430:intron | 20.0% |
| !!! | TTTGAAATTTTGATACATTG+AGG | + | chr1_1:56808817-56808836 | Msa0030430:intron | 20.0% |
| !!! | TTGAAATTTTGATACATTGA+GGG | + | chr1_1:56808818-56808837 | Msa0030430:intron | 20.0% |
| !! | TAATGATAAGAAACAATTTG+GGG | - | chr1_1:56808891-56808910 | None:intergenic | 20.0% |
| !!! | CATTTAAAGCATTTATTCAT+AGG | - | chr1_1:56808303-56808322 | None:intergenic | 20.0% |
| !!! | AAATGTTAAATTAACTTGTG+GGG | + | chr1_1:56808318-56808337 | Msa0030430:intron | 20.0% |
| !! | ATATAGTTTAAGGAATAAAG+GGG | + | chr1_1:56808527-56808546 | Msa0030430:intron | 20.0% |
| !!! | TATTTTGAAATTTCGATACT+TGG | - | chr1_1:56808603-56808622 | None:intergenic | 20.0% |
| !! | CATATTTAATGTCAATATTG+AGG | + | chr1_1:56808742-56808761 | Msa0030430:intron | 20.0% |
| !!! | TTTGAAATTTTGATACATTG+AGG | + | chr1_1:56808817-56808836 | Msa0030430:intron | 20.0% |
| !!! | TTGAAATTTTGATACATTGA+GGG | + | chr1_1:56808818-56808837 | Msa0030430:intron | 20.0% |
| !! | TAATGATAAGAAACAATTTG+GGG | - | chr1_1:56808891-56808910 | None:intergenic | 20.0% |
| ! | GAAATAAAAAGCAAGATAGA+AGG | - | chr1_1:56808161-56808180 | None:intergenic | 25.0% |
| ! | CTTAGTATTAAGGACTAAAT+TGG | - | chr1_1:56808419-56808438 | None:intergenic | 25.0% |
| ! | TGACTAAGTTCAAATACTTT+AGG | + | chr1_1:56808487-56808506 | Msa0030430:intron | 25.0% |
| ! | GACTAAGTTCAAATACTTTA+GGG | + | chr1_1:56808488-56808507 | Msa0030430:intron | 25.0% |
| ! | ATCGAAATTTCAAAATAGTC+CGG | + | chr1_1:56808606-56808625 | Msa0030430:intron | 25.0% |
| ! | ATACTTACTTATTGTCGTAT+CGG | + | chr1_1:56808695-56808714 | Msa0030430:intron | 25.0% |
| !! | TATTTTACAACTGTCATTGA+GGG | + | chr1_1:56808939-56808958 | Msa0030430:intron | 25.0% |
| ! | AAAGATTGAAATTCTGTAAC+TGG | + | chr1_1:56809039-56809058 | Msa0030430:intron | 25.0% |
| ! | AAGATTGAAATTCTGTAACT+GGG | + | chr1_1:56809040-56809059 | Msa0030430:intron | 25.0% |
| ! | GTATAAATTTGAAGAAAGAG+CGG | + | chr1_1:56809095-56809114 | Msa0030430:intron | 25.0% |
| !! | AAGCATTTAGAGTTAAGAAA+AGG | + | chr1_1:56809198-56809217 | Msa0030430:CDS | 25.0% |
| !! | ATGAAATTTTCGTTTGTGAA+AGG | + | chr1_1:56809273-56809292 | Msa0030430:CDS | 25.0% |
| !! | TGAAATTTTCGTTTGTGAAA+GGG | + | chr1_1:56809274-56809293 | Msa0030430:CDS | 25.0% |
| ! | GAAATAAAAAGCAAGATAGA+AGG | - | chr1_1:56808161-56808180 | None:intergenic | 25.0% |
| ! | CTTAGTATTAAGGACTAAAT+TGG | - | chr1_1:56808419-56808438 | None:intergenic | 25.0% |
| ! | TGACTAAGTTCAAATACTTT+AGG | + | chr1_1:56808487-56808506 | Msa0030430:intron | 25.0% |
| ! | GACTAAGTTCAAATACTTTA+GGG | + | chr1_1:56808488-56808507 | Msa0030430:intron | 25.0% |
| ! | ATCGAAATTTCAAAATAGTC+CGG | + | chr1_1:56808606-56808625 | Msa0030430:intron | 25.0% |
| ! | ATACTTACTTATTGTCGTAT+CGG | + | chr1_1:56808695-56808714 | Msa0030430:intron | 25.0% |
| !! | TATTTTACAACTGTCATTGA+GGG | + | chr1_1:56808939-56808958 | Msa0030430:intron | 25.0% |
| ! | AAAGATTGAAATTCTGTAAC+TGG | + | chr1_1:56809039-56809058 | Msa0030430:intron | 25.0% |
| ! | AAGATTGAAATTCTGTAACT+GGG | + | chr1_1:56809040-56809059 | Msa0030430:intron | 25.0% |
| ! | GTATAAATTTGAAGAAAGAG+CGG | + | chr1_1:56809095-56809114 | Msa0030430:intron | 25.0% |
| !! | AAGCATTTAGAGTTAAGAAA+AGG | + | chr1_1:56809198-56809217 | Msa0030430:CDS | 25.0% |
| !! | ATGAAATTTTCGTTTGTGAA+AGG | + | chr1_1:56809273-56809292 | Msa0030430:CDS | 25.0% |
| !! | TGAAATTTTCGTTTGTGAAA+GGG | + | chr1_1:56809274-56809293 | Msa0030430:CDS | 25.0% |
| ! | TTTGAAATTTCGATACTTGG+AGG | - | chr1_1:56808600-56808619 | None:intergenic | 30.0% |
| ATTAATTAAAGTGGCACCAA+TGG | + | chr1_1:56808907-56808926 | Msa0030430:intron | 30.0% | |
| ! | CTATTTTACAACTGTCATTG+AGG | + | chr1_1:56808938-56808957 | Msa0030430:intron | 30.0% |
| AAATTTCGTTGTGTATTGTG+TGG | + | chr1_1:56808997-56809016 | Msa0030430:intron | 30.0% | |
| TTCAAAGAGGATGTTGAAAA+AGG | + | chr1_1:56809304-56809323 | Msa0030430:CDS | 30.0% | |
| ! | TTTGAAATTTCGATACTTGG+AGG | - | chr1_1:56808600-56808619 | None:intergenic | 30.0% |
| ATTAATTAAAGTGGCACCAA+TGG | + | chr1_1:56808907-56808926 | Msa0030430:intron | 30.0% | |
| ! | CTATTTTACAACTGTCATTG+AGG | + | chr1_1:56808938-56808957 | Msa0030430:intron | 30.0% |
| AAATTTCGTTGTGTATTGTG+TGG | + | chr1_1:56808997-56809016 | Msa0030430:intron | 30.0% | |
| TTCAAAGAGGATGTTGAAAA+AGG | + | chr1_1:56809304-56809323 | Msa0030430:CDS | 30.0% | |
| AGAATGGAAGTGAAACTAAC+CGG | - | chr1_1:56808112-56808131 | None:intergenic | 35.0% | |
| AAGGAACGAAAATGGAAGAA+TGG | - | chr1_1:56808128-56808147 | None:intergenic | 35.0% | |
| GAAATGGAAAGGAACGAAAA+TGG | - | chr1_1:56808136-56808155 | None:intergenic | 35.0% | |
| GATAGAAGGAAGAAATGGAA+AGG | - | chr1_1:56808147-56808166 | None:intergenic | 35.0% | |
| AGCAAGATAGAAGGAAGAAA+TGG | - | chr1_1:56808152-56808171 | None:intergenic | 35.0% | |
| TCTCGAACGTCTTAGTATTA+AGG | - | chr1_1:56808429-56808448 | None:intergenic | 35.0% | |
| TTTCAAAATAGTCCGGATTG+TGG | + | chr1_1:56808613-56808632 | Msa0030430:intron | 35.0% | |
| GACTACTCATTACACATTCA+CGG | + | chr1_1:56808849-56808868 | Msa0030430:intron | 35.0% | |
| TAAAATAGTCACAGTGCCAT+TGG | - | chr1_1:56808926-56808945 | None:intergenic | 35.0% | |
| !!! | AACTGGGTTGTTTGTTTTGT+TGG | + | chr1_1:56809056-56809075 | Msa0030430:intron | 35.0% |
| !!! | ACTGGGTTGTTTGTTTTGTT+GGG | + | chr1_1:56809057-56809076 | Msa0030430:intron | 35.0% |
| AAGTTGTGTAGTATCAGAGA+TGG | + | chr1_1:56809121-56809140 | Msa0030430:intron | 35.0% | |
| AGTTGTGTAGTATCAGAGAT+GGG | + | chr1_1:56809122-56809141 | Msa0030430:intron | 35.0% | |
| TATCAGAGATGGGAGATATT+TGG | + | chr1_1:56809132-56809151 | Msa0030430:exon | 35.0% | |
| !! | AGATATTTGGTGGTCACTTT+TGG | + | chr1_1:56809145-56809164 | Msa0030430:CDS | 35.0% |
| !!! | GATATTTGGTGGTCACTTTT+GGG | + | chr1_1:56809146-56809165 | Msa0030430:CDS | 35.0% |
| !!! | ATATTTGGTGGTCACTTTTG+GGG | + | chr1_1:56809147-56809166 | Msa0030430:CDS | 35.0% |
| AAGAGGATGTTGAAAAAGGT+TGG | + | chr1_1:56809308-56809327 | Msa0030430:CDS | 35.0% | |
| GTAACACAAGTATCAGGAAT+TGG | - | chr1_1:56809350-56809369 | None:intergenic | 35.0% | |
| CAAACAGTAACACAAGTATC+AGG | - | chr1_1:56809356-56809375 | None:intergenic | 35.0% | |
| ! | GATACTTGTGTTACTGTTTG+TGG | + | chr1_1:56809356-56809375 | Msa0030430:CDS | 35.0% |
| ACCAACATCAAGTACCTAAT+TGG | + | chr1_1:56809432-56809451 | Msa0030430:CDS | 35.0% | |
| TCCAATTAGGTACTTGATGT+TGG | - | chr1_1:56809436-56809455 | None:intergenic | 35.0% | |
| ! | AGACATGTGTCATTCCAATT+AGG | - | chr1_1:56809449-56809468 | None:intergenic | 35.0% |
| ATTGGAATGACACATGTCTT+AGG | + | chr1_1:56809450-56809469 | Msa0030430:CDS | 35.0% | |
| AGAATGGAAGTGAAACTAAC+CGG | - | chr1_1:56808112-56808131 | None:intergenic | 35.0% | |
| AAGGAACGAAAATGGAAGAA+TGG | - | chr1_1:56808128-56808147 | None:intergenic | 35.0% | |
| GAAATGGAAAGGAACGAAAA+TGG | - | chr1_1:56808136-56808155 | None:intergenic | 35.0% | |
| GATAGAAGGAAGAAATGGAA+AGG | - | chr1_1:56808147-56808166 | None:intergenic | 35.0% | |
| AGCAAGATAGAAGGAAGAAA+TGG | - | chr1_1:56808152-56808171 | None:intergenic | 35.0% | |
| TCTCGAACGTCTTAGTATTA+AGG | - | chr1_1:56808429-56808448 | None:intergenic | 35.0% | |
| TTTCAAAATAGTCCGGATTG+TGG | + | chr1_1:56808613-56808632 | Msa0030430:intron | 35.0% | |
| GACTACTCATTACACATTCA+CGG | + | chr1_1:56808849-56808868 | Msa0030430:intron | 35.0% | |
| TAAAATAGTCACAGTGCCAT+TGG | - | chr1_1:56808926-56808945 | None:intergenic | 35.0% | |
| !!! | AACTGGGTTGTTTGTTTTGT+TGG | + | chr1_1:56809056-56809075 | Msa0030430:intron | 35.0% |
| !!! | ACTGGGTTGTTTGTTTTGTT+GGG | + | chr1_1:56809057-56809076 | Msa0030430:intron | 35.0% |
| AAGTTGTGTAGTATCAGAGA+TGG | + | chr1_1:56809121-56809140 | Msa0030430:intron | 35.0% | |
| AGTTGTGTAGTATCAGAGAT+GGG | + | chr1_1:56809122-56809141 | Msa0030430:intron | 35.0% | |
| TATCAGAGATGGGAGATATT+TGG | + | chr1_1:56809132-56809151 | Msa0030430:exon | 35.0% | |
| !! | AGATATTTGGTGGTCACTTT+TGG | + | chr1_1:56809145-56809164 | Msa0030430:CDS | 35.0% |
| !!! | GATATTTGGTGGTCACTTTT+GGG | + | chr1_1:56809146-56809165 | Msa0030430:CDS | 35.0% |
| !!! | ATATTTGGTGGTCACTTTTG+GGG | + | chr1_1:56809147-56809166 | Msa0030430:CDS | 35.0% |
| AAGAGGATGTTGAAAAAGGT+TGG | + | chr1_1:56809308-56809327 | Msa0030430:CDS | 35.0% | |
| GTAACACAAGTATCAGGAAT+TGG | - | chr1_1:56809350-56809369 | None:intergenic | 35.0% | |
| CAAACAGTAACACAAGTATC+AGG | - | chr1_1:56809356-56809375 | None:intergenic | 35.0% | |
| ! | GATACTTGTGTTACTGTTTG+TGG | + | chr1_1:56809356-56809375 | Msa0030430:CDS | 35.0% |
| ACCAACATCAAGTACCTAAT+TGG | + | chr1_1:56809432-56809451 | Msa0030430:CDS | 35.0% | |
| TCCAATTAGGTACTTGATGT+TGG | - | chr1_1:56809436-56809455 | None:intergenic | 35.0% | |
| ! | AGACATGTGTCATTCCAATT+AGG | - | chr1_1:56809449-56809468 | None:intergenic | 35.0% |
| ATTGGAATGACACATGTCTT+AGG | + | chr1_1:56809450-56809469 | Msa0030430:CDS | 35.0% | |
| GACTAACATAGTCCACAATC+CGG | - | chr1_1:56808628-56808647 | None:intergenic | 40.0% | |
| !!! | TGAGGGATTGTTTTAACGTC+AGG | + | chr1_1:56808760-56808779 | Msa0030430:intron | 40.0% |
| !!! | GAGGGATTGTTTTAACGTCA+GGG | + | chr1_1:56808761-56808780 | Msa0030430:intron | 40.0% |
| !!! | AGGGACTATTTTGACTAACG+AGG | + | chr1_1:56808780-56808799 | Msa0030430:intron | 40.0% |
| GAATTCGAACTCTGTCTCTT+AGG | + | chr1_1:56808961-56808980 | Msa0030430:intron | 40.0% | |
| !!! | TATTTGGTGGTCACTTTTGG+GGG | + | chr1_1:56809148-56809167 | Msa0030430:CDS | 40.0% |
| AAAGGAATGCAGAAGAGCAA+AGG | + | chr1_1:56809216-56809235 | Msa0030430:CDS | 40.0% | |
| GACTAACATAGTCCACAATC+CGG | - | chr1_1:56808628-56808647 | None:intergenic | 40.0% | |
| !!! | TGAGGGATTGTTTTAACGTC+AGG | + | chr1_1:56808760-56808779 | Msa0030430:intron | 40.0% |
| !!! | GAGGGATTGTTTTAACGTCA+GGG | + | chr1_1:56808761-56808780 | Msa0030430:intron | 40.0% |
| !!! | AGGGACTATTTTGACTAACG+AGG | + | chr1_1:56808780-56808799 | Msa0030430:intron | 40.0% |
| GAATTCGAACTCTGTCTCTT+AGG | + | chr1_1:56808961-56808980 | Msa0030430:intron | 40.0% | |
| !!! | TATTTGGTGGTCACTTTTGG+GGG | + | chr1_1:56809148-56809167 | Msa0030430:CDS | 40.0% |
| AAAGGAATGCAGAAGAGCAA+AGG | + | chr1_1:56809216-56809235 | Msa0030430:CDS | 40.0% | |
| ATGGAAGTGAAACTAACCGG+CGG | - | chr1_1:56808109-56808128 | None:intergenic | 45.0% | |
| CAGAGATGGGAGATATTTGG+TGG | + | chr1_1:56809135-56809154 | Msa0030430:exon | 45.0% | |
| ! | AGCAAAGGTTGAAGAGTGCA+AGG | + | chr1_1:56809231-56809250 | Msa0030430:CDS | 45.0% |
| ! | GCAAAGGTTGAAGAGTGCAA+GGG | + | chr1_1:56809232-56809251 | Msa0030430:CDS | 45.0% |
| ! | CAAAGGTTGAAGAGTGCAAG+GGG | + | chr1_1:56809233-56809252 | Msa0030430:CDS | 45.0% |
| AAAGGGTCTGCACTTCAAAG+AGG | + | chr1_1:56809291-56809310 | Msa0030430:CDS | 45.0% | |
| GGAATGACACATGTCTTAGG+AGG | + | chr1_1:56809453-56809472 | Msa0030430:CDS | 45.0% | |
| ACTCTCTTCTCAGTCTTCTC+AGG | + | chr1_1:56809496-56809515 | Msa0030430:CDS | 45.0% | |
| ATGGAAGTGAAACTAACCGG+CGG | - | chr1_1:56808109-56808128 | None:intergenic | 45.0% | |
| CAGAGATGGGAGATATTTGG+TGG | + | chr1_1:56809135-56809154 | Msa0030430:exon | 45.0% | |
| ! | AGCAAAGGTTGAAGAGTGCA+AGG | + | chr1_1:56809231-56809250 | Msa0030430:CDS | 45.0% |
| ! | GCAAAGGTTGAAGAGTGCAA+GGG | + | chr1_1:56809232-56809251 | Msa0030430:CDS | 45.0% |
| ! | CAAAGGTTGAAGAGTGCAAG+GGG | + | chr1_1:56809233-56809252 | Msa0030430:CDS | 45.0% |
| AAAGGGTCTGCACTTCAAAG+AGG | + | chr1_1:56809291-56809310 | Msa0030430:CDS | 45.0% | |
| GGAATGACACATGTCTTAGG+AGG | + | chr1_1:56809453-56809472 | Msa0030430:CDS | 45.0% | |
| !! | TATTATATTTATATAGTTTA+AGG | + | chr1_1:56808517-56808536 | Msa0030430:intron | 5.0% |
| !! | TATTATATTTATATAGTTTA+AGG | + | chr1_1:56808517-56808536 | Msa0030430:intron | 5.0% |
| CTTGTCCTGCAACAACGACA+GGG | - | chr1_1:56809181-56809200 | None:intergenic | 50.0% | |
| AGAGTGCAAGGGGAAGAGAA+AGG | + | chr1_1:56809243-56809262 | Msa0030430:CDS | 50.0% | |
| TGCTGAAGCTTGTGCTCGTA+CGG | + | chr1_1:56809400-56809419 | Msa0030430:CDS | 50.0% | |
| CTTGTCCTGCAACAACGACA+GGG | - | chr1_1:56809181-56809200 | None:intergenic | 50.0% | |
| AGAGTGCAAGGGGAAGAGAA+AGG | + | chr1_1:56809243-56809262 | Msa0030430:CDS | 50.0% | |
| TGCTGAAGCTTGTGCTCGTA+CGG | + | chr1_1:56809400-56809419 | Msa0030430:CDS | 50.0% | |
| GAAGTGAAACTAACCGGCGG+TGG | - | chr1_1:56808106-56808125 | None:intergenic | 55.0% | |
| GCTTGTCCTGCAACAACGAC+AGG | - | chr1_1:56809182-56809201 | None:intergenic | 55.0% | |
| GAAGTGAAACTAACCGGCGG+TGG | - | chr1_1:56808106-56808125 | None:intergenic | 55.0% | |
| GCTTGTCCTGCAACAACGAC+AGG | - | chr1_1:56809182-56809201 | None:intergenic | 55.0% | |
| !! | GGTGGCGGAGAAAGAGAAGG+CGG | - | chr1_1:56808088-56808107 | None:intergenic | 60.0% |
| TTCTCTTTCTCCGCCACCGC+CGG | + | chr1_1:56808090-56808109 | Msa0030430:five_prime_UTR | 60.0% | |
| GTGAAACTAACCGGCGGTGG+CGG | - | chr1_1:56808103-56808122 | None:intergenic | 60.0% | |
| GCAGTCCCTGTCGTTGTTGC+AGG | + | chr1_1:56809173-56809192 | Msa0030430:CDS | 60.0% | |
| !! | GGTGGCGGAGAAAGAGAAGG+CGG | - | chr1_1:56808088-56808107 | None:intergenic | 60.0% |
| TTCTCTTTCTCCGCCACCGC+CGG | + | chr1_1:56808090-56808109 | Msa0030430:five_prime_UTR | 60.0% | |
| GTGAAACTAACCGGCGGTGG+CGG | - | chr1_1:56808103-56808122 | None:intergenic | 60.0% | |
| GCAGTCCCTGTCGTTGTTGC+AGG | + | chr1_1:56809173-56809192 | Msa0030430:CDS | 60.0% | |
| !! | GGCGGTGGCGGAGAAAGAGA+AGG | - | chr1_1:56808091-56808110 | None:intergenic | 65.0% |
| !! | GGCGGTGGCGGAGAAAGAGA+AGG | - | chr1_1:56808091-56808110 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 56808030 | 56809517 | 56808030 | ID=Msa0030430;Name=Msa0030430 |
| chr1_1 | mRNA | 56808030 | 56809517 | 56808030 | ID=Msa0030430-mRNA-1;Parent=Msa0030430;Name=Msa0030430-mRNA-1;_AED=0.18;_eAED=0.20;_QI=90|0|0.5|1|0|0|2|0|126 |
| chr1_1 | exon | 56808030 | 56808111 | 56808030 | ID=Msa0030430-mRNA-1:exon:17034;Parent=Msa0030430-mRNA-1 |
| chr1_1 | exon | 56809132 | 56809517 | 56809132 | ID=Msa0030430-mRNA-1:exon:17035;Parent=Msa0030430-mRNA-1 |
| chr1_1 | five_prime_UTR | 56808030 | 56808111 | 56808030 | ID=Msa0030430-mRNA-1:five_prime_utr;Parent=Msa0030430-mRNA-1 |
| chr1_1 | five_prime_UTR | 56809132 | 56809139 | 56809132 | ID=Msa0030430-mRNA-1:five_prime_utr;Parent=Msa0030430-mRNA-1 |
| chr1_1 | CDS | 56809140 | 56809517 | 56809140 | ID=Msa0030430-mRNA-1:cds;Parent=Msa0030430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
