Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359030 | KEH24808.1 | 79.787 | 94 | 19 | 0 | 23 | 116 | 287 | 380 | 1.14e-39 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359030 | A0A072U6P8 | 79.787 | 94 | 19 | 0 | 23 | 116 | 287 | 380 | 5.44e-40 | 151 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031340 | Msa1359030 | 0.814089 | 1.840114e-51 | -8.615850e-47 |
| Msa0090360 | Msa1359030 | 0.800273 | 1.556965e-48 | -8.615850e-47 |
| Msa1346370 | Msa1359030 | 0.801965 | 7.020871e-49 | -8.615850e-47 |
| Msa1353060 | Msa1359030 | 0.801866 | 7.355136e-49 | -8.615850e-47 |
| Msa1353980 | Msa1359030 | 0.804271 | 2.340897e-49 | -8.615850e-47 |
| Msa1359030 | Msa1359040 | 0.881292 | 2.709728e-70 | -8.615850e-47 |
| Msa1359030 | Msa1460020 | 0.828259 | 9.930913e-55 | -8.615850e-47 |
| Msa1359030 | Msa1466540 | 0.800997 | 1.108324e-48 | -8.615850e-47 |
| Msa0612960 | Msa1359030 | 0.815097 | 1.100570e-51 | -8.615850e-47 |
| Msa0657610 | Msa1359030 | 0.802856 | 4.600376e-49 | -8.615850e-47 |
| Msa0663390 | Msa1359030 | 0.806213 | 9.172790e-50 | -8.615850e-47 |
| Msa0667050 | Msa1359030 | 0.808499 | 3.005456e-50 | -8.615850e-47 |
| Msa0711890 | Msa1359030 | 0.809841 | 1.550303e-50 | -8.615850e-47 |
| Msa0750880 | Msa1359030 | 0.800934 | 1.141456e-48 | -8.615850e-47 |
| Msa0794730 | Msa1359030 | 0.819249 | 1.282348e-52 | -8.615850e-47 |
| Msa0808270 | Msa1359030 | 0.809108 | 2.227368e-50 | -8.615850e-47 |
| Msa0140780 | Msa1359030 | 0.802751 | 4.835461e-49 | -8.615850e-47 |
| Msa0220580 | Msa1359030 | 0.806293 | 8.823909e-50 | -8.615850e-47 |
| Msa1305340 | Msa1359030 | 0.806895 | 6.586735e-50 | -8.615850e-47 |
| Msa1306840 | Msa1359030 | 0.817673 | 2.918651e-52 | -8.615850e-47 |
| Msa1327680 | Msa1359030 | 0.807868 | 4.095185e-50 | -8.615850e-47 |
| Msa1331000 | Msa1359030 | 0.801416 | 9.097673e-49 | -8.615850e-47 |
| Msa1331910 | Msa1359030 | 0.818430 | 1.968261e-52 | -8.615850e-47 |
| Msa0410650 | Msa1359030 | 0.806169 | 9.373128e-50 | -8.615850e-47 |
| Msa0436760 | Msa1359030 | 0.805837 | 1.100599e-49 | -8.615850e-47 |
| Msa0440750 | Msa1359030 | 0.806457 | 8.150080e-50 | -8.615850e-47 |
| Msa0466390 | Msa1359030 | 0.807215 | 5.634748e-50 | -8.615850e-47 |
| Msa0481530 | Msa1359030 | 0.805886 | 1.074732e-49 | -8.615850e-47 |
| Msa0993290 | Msa1359030 | 0.812041 | 5.174956e-51 | -8.615850e-47 |
| Msa0993600 | Msa1359030 | 0.810895 | 9.180936e-51 | -8.615850e-47 |
| Msa1082500 | Msa1359030 | 0.814618 | 1.405334e-51 | -8.615850e-47 |
| Msa1085200 | Msa1359030 | 0.804819 | 1.798816e-49 | -8.615850e-47 |
| Msa0244810 | Msa1359030 | 0.819168 | 1.338437e-52 | -8.615850e-47 |
| Msa0287650 | Msa1359030 | 0.826271 | 2.972406e-54 | -8.615850e-47 |
| Msa0317730 | Msa1359030 | 0.804688 | 1.915819e-49 | -8.615850e-47 |
| Msa0336420 | Msa1359030 | 0.807640 | 4.580321e-50 | -8.615850e-47 |
| Msa0345970 | Msa1359030 | 0.813515 | 2.461248e-51 | -8.615850e-47 |
| Msa1131220 | Msa1359030 | 0.812488 | 4.133682e-51 | -8.615850e-47 |
| Msa1204530 | Msa1359030 | 0.807019 | 6.199494e-50 | -8.615850e-47 |
| Msa1214890 | Msa1359030 | 0.819687 | 1.019012e-52 | -8.615850e-47 |
| Msa0503060 | Msa1359030 | 0.800856 | 1.184093e-48 | -8.615850e-47 |
| Msa0507680 | Msa1359030 | 0.803583 | 3.252682e-49 | -8.615850e-47 |
| Msa0509610 | Msa1359030 | 0.818966 | 1.487375e-52 | -8.615850e-47 |
| Msa0545070 | Msa1359030 | 0.803327 | 3.674958e-49 | -8.615850e-47 |
| Msa0555020 | Msa1359030 | 0.801486 | 8.800601e-49 | -8.615850e-47 |
| Msa0558230 | Msa1359030 | 0.803024 | 4.246116e-49 | -8.615850e-47 |
| Msa0563840 | Msa1359030 | 0.801956 | 7.048657e-49 | -8.615850e-47 |
| Msa0577500 | Msa1359030 | 0.819643 | 1.042690e-52 | -8.615850e-47 |
| Msa0851170 | Msa1359030 | 0.889671 | 1.966540e-73 | -8.615850e-47 |
| Msa0888530 | Msa1359030 | 0.801870 | 7.340486e-49 | -8.615850e-47 |
| Msa0968680 | Msa1359030 | 0.800864 | 1.179947e-48 | -8.615850e-47 |
| Msa0969520 | Msa1359030 | 0.820464 | 6.763731e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359030 | MtrunA17_Chr6g0450151 | 79.787 | 94 | 19 | 0 | 23 | 116 | 329 | 422 | 1.06e-43 | 151 |
| Msa1359030 | MtrunA17_Chr6g0450071 | 72.340 | 94 | 26 | 0 | 23 | 116 | 269 | 362 | 9.39e-40 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCAAAATTATCCTTAAA+AGG | 0.203644 | tig0016634:+3768 | Msa1359030:intergenic |
| TTCTGTTGGCGAATTTGTTT+GGG | 0.261695 | tig0016634:-3938 | Msa1359030:CDS |
| TTTCTGTTGGCGAATTTGTT+TGG | 0.262300 | tig0016634:-3939 | Msa1359030:CDS |
| ATGCTCTCTGTGCCACTATC+TGG | 0.338217 | tig0016634:+3567 | None:intergenic |
| AATATTCGTTCTGTTTCTGC+TGG | 0.350235 | tig0016634:-2920 | None:intergenic |
| AGTCGTTCGTTTGTTGTTGC+GGG | 0.355271 | tig0016634:-3657 | Msa1359030:CDS |
| AAATGAGGTTGGAAGGGTTC+TGG | 0.372760 | tig0016634:-3691 | Msa1359030:CDS |
| AACAGCATAGGTAAAAGCTT+TGG | 0.424351 | tig0016634:+3725 | Msa1359030:intergenic |
| AAGAGTCATCCGTGGTGGCC+AGG | 0.469996 | tig0016634:-3907 | Msa1359030:intron |
| TAGTGGCACAGAGAGCATTT+CGG | 0.477803 | tig0016634:-3562 | Msa1359030:CDS |
| CAAGAAGCTGTAAATGAGGT+TGG | 0.503519 | tig0016634:-3702 | Msa1359030:CDS |
| GAGTCGTTCGTTTGTTGTTG+CGG | 0.521739 | tig0016634:-3658 | Msa1359030:CDS |
| GTCTGAATTCGCTCCAATGT+TGG | 0.525621 | tig0016634:-3625 | Msa1359030:CDS |
| ATATTCGTTCTGTTTCTGCT+GGG | 0.537547 | tig0016634:-2919 | None:intergenic |
| AAGCTGTAAATGAGGTTGGA+AGG | 0.558828 | tig0016634:-3698 | Msa1359030:CDS |
| TTGACGATTTGATCGATGAA+AGG | 0.570904 | tig0016634:-3969 | None:intergenic |
| GTCGTTCGTTTGTTGTTGCG+GGG | 0.581074 | tig0016634:-3656 | Msa1359030:CDS |
| AGCTGTAAATGAGGTTGGAA+GGG | 0.590294 | tig0016634:-3697 | Msa1359030:CDS |
| GAAAGGTGTGACATTTCTGT+TGG | 0.595681 | tig0016634:-3952 | Msa1359030:CDS |
| TACAGCTTCTTGAACAGCAT+AGG | 0.602664 | tig0016634:+3713 | Msa1359030:intergenic |
| TCGTTCGTTTGTTGTTGCGG+GGG | 0.630767 | tig0016634:-3655 | Msa1359030:CDS |
| TAAACCCAACCTGGCCACCA+CGG | 0.639794 | tig0016634:+3898 | Msa1359030:intergenic |
| TGTTCAAGAAGCTGTAAATG+AGG | 0.656142 | tig0016634:-3706 | Msa1359030:CDS |
| TTTGTTGCAGATTTGCGATG+AGG | 0.676368 | tig0016634:-2960 | Msa1359030:intron |
| TCTGTTGGCGAATTTGTTTG+GGG | 0.678938 | tig0016634:-3937 | Msa1359030:CDS |
| TTTGATGATATGGTGAGACG+AGG | 0.681159 | tig0016634:-3753 | Msa1359030:CDS |
| TGGCACAGAGAGCATTTCGG+CGG | 0.682197 | tig0016634:-3559 | Msa1359030:intron |
| AGATTAAGAGTCATCCGTGG+TGG | 0.700219 | tig0016634:-3912 | Msa1359030:CDS |
| GAAAGATTAAGAGTCATCCG+TGG | 0.746341 | tig0016634:-3915 | Msa1359030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATCAAAATTATCCTTAAA+AGG | + | tig0016634:3111-3130 | Msa1359030:intergenic | 20.0% |
| !!! | TAAGGATAATTTTGATGATA+TGG | - | tig0016634:3113-3132 | Msa1359030:intron | 20.0% |
| !! | ATCAAAAGCCATAAATAATT+CGG | + | tig0016634:3429-3448 | Msa1359030:intergenic | 20.0% |
| !! | AAAGAAATGAACAAACAATA+AGG | - | tig0016634:3678-3697 | Msa1359030:CDS | 20.0% |
| !!! | TTTTTACAGTGTTTTACTTA+TGG | + | tig0016634:3745-3764 | Msa1359030:intergenic | 20.0% |
| !! | TCATCAAAATTATCCTTAAA+AGG | + | tig0016634:3111-3130 | Msa1359030:intergenic | 20.0% |
| !!! | TAAGGATAATTTTGATGATA+TGG | - | tig0016634:3113-3132 | Msa1359030:intron | 20.0% |
| !! | ATCAAAAGCCATAAATAATT+CGG | + | tig0016634:3429-3448 | Msa1359030:intergenic | 20.0% |
| !! | AAAGAAATGAACAAACAATA+AGG | - | tig0016634:3678-3697 | Msa1359030:CDS | 20.0% |
| !!! | TTTTTACAGTGTTTTACTTA+TGG | + | tig0016634:3745-3764 | Msa1359030:intergenic | 20.0% |
| ! | CCAAATTCAAGAATTGTATT+TGG | + | tig0016634:3497-3516 | Msa1359030:intergenic | 25.0% |
| ! | CCAAATACAATTCTTGAATT+TGG | - | tig0016634:3494-3513 | Msa1359030:intron | 25.0% |
| ! | CTTGAATTTGGATAATTTCA+TGG | - | tig0016634:3506-3525 | Msa1359030:intron | 25.0% |
| ! | TGGATAATTTCATGGTTATT+TGG | - | tig0016634:3514-3533 | Msa1359030:intron | 25.0% |
| ! | TATTTCATTGCAATTCTGTT+TGG | - | tig0016634:3615-3634 | Msa1359030:CDS | 25.0% |
| ! | ATATATTTGAGCATGAGAAT+AGG | - | tig0016634:3878-3897 | Msa1359030:intron | 25.0% |
| ! | CCAAATTCAAGAATTGTATT+TGG | + | tig0016634:3497-3516 | Msa1359030:intergenic | 25.0% |
| ! | CCAAATACAATTCTTGAATT+TGG | - | tig0016634:3494-3513 | Msa1359030:intron | 25.0% |
| ! | CTTGAATTTGGATAATTTCA+TGG | - | tig0016634:3506-3525 | Msa1359030:intron | 25.0% |
| ! | TGGATAATTTCATGGTTATT+TGG | - | tig0016634:3514-3533 | Msa1359030:intron | 25.0% |
| ! | TATTTCATTGCAATTCTGTT+TGG | - | tig0016634:3615-3634 | Msa1359030:CDS | 25.0% |
| ! | ATATATTTGAGCATGAGAAT+AGG | - | tig0016634:3878-3897 | Msa1359030:intron | 25.0% |
| TTAAAAGGCTTCAATTGTGA+CGG | + | tig0016634:3096-3115 | Msa1359030:intergenic | 30.0% | |
| AAAAATTCAGGAATCAAGGA+AGG | - | tig0016634:3276-3295 | Msa1359030:intron | 30.0% | |
| CAGAATTGCAATGAAATACA+AGG | + | tig0016634:3613-3632 | Msa1359030:intergenic | 30.0% | |
| GAAATCTCTATACATTCAGT+AGG | - | tig0016634:3835-3854 | Msa1359030:intron | 30.0% | |
| TTAAAAGGCTTCAATTGTGA+CGG | + | tig0016634:3096-3115 | Msa1359030:intergenic | 30.0% | |
| AAAAATTCAGGAATCAAGGA+AGG | - | tig0016634:3276-3295 | Msa1359030:intron | 30.0% | |
| CAGAATTGCAATGAAATACA+AGG | + | tig0016634:3613-3632 | Msa1359030:intergenic | 30.0% | |
| GAAATCTCTATACATTCAGT+AGG | - | tig0016634:3835-3854 | Msa1359030:intron | 30.0% | |
| ! | TTTCTGTTGGCGAATTTGTT+TGG | - | tig0016634:2937-2956 | Msa1359030:CDS | 35.0% |
| ! | TTCTGTTGGCGAATTTGTTT+GGG | - | tig0016634:2938-2957 | Msa1359030:CDS | 35.0% |
| CTGAAACAAGAATAGACTCT+TGG | - | tig0016634:3035-3054 | Msa1359030:intron | 35.0% | |
| ACTTTGATGGAACATTTGCT+TGG | - | tig0016634:3064-3083 | Msa1359030:intron | 35.0% | |
| TAAAAGGCTTCAATTGTGAC+GGG | + | tig0016634:3095-3114 | Msa1359030:intergenic | 35.0% | |
| ! | GTCACAATTGAAGCCTTTTA+AGG | - | tig0016634:3095-3114 | Msa1359030:intron | 35.0% |
| AACAGCATAGGTAAAAGCTT+TGG | + | tig0016634:3154-3173 | Msa1359030:intergenic | 35.0% | |
| TGTTCAAGAAGCTGTAAATG+AGG | - | tig0016634:3170-3189 | Msa1359030:intron | 35.0% | |
| TAGTTGCGCCGAATTATTTA+TGG | - | tig0016634:3418-3437 | Msa1359030:intron | 35.0% | |
| ATTTGAGCATGAGAATAGGA+AGG | - | tig0016634:3882-3901 | Msa1359030:intron | 35.0% | |
| ! | TTTCTGTTGGCGAATTTGTT+TGG | - | tig0016634:2937-2956 | Msa1359030:CDS | 35.0% |
| ! | TTCTGTTGGCGAATTTGTTT+GGG | - | tig0016634:2938-2957 | Msa1359030:CDS | 35.0% |
| CTGAAACAAGAATAGACTCT+TGG | - | tig0016634:3035-3054 | Msa1359030:intron | 35.0% | |
| ACTTTGATGGAACATTTGCT+TGG | - | tig0016634:3064-3083 | Msa1359030:intron | 35.0% | |
| TAAAAGGCTTCAATTGTGAC+GGG | + | tig0016634:3095-3114 | Msa1359030:intergenic | 35.0% | |
| ! | GTCACAATTGAAGCCTTTTA+AGG | - | tig0016634:3095-3114 | Msa1359030:intron | 35.0% |
| AACAGCATAGGTAAAAGCTT+TGG | + | tig0016634:3154-3173 | Msa1359030:intergenic | 35.0% | |
| TGTTCAAGAAGCTGTAAATG+AGG | - | tig0016634:3170-3189 | Msa1359030:intron | 35.0% | |
| TAGTTGCGCCGAATTATTTA+TGG | - | tig0016634:3418-3437 | Msa1359030:intron | 35.0% | |
| ATTTGAGCATGAGAATAGGA+AGG | - | tig0016634:3882-3901 | Msa1359030:intron | 35.0% | |
| ! | GAAAGGTGTGACATTTCTGT+TGG | - | tig0016634:2924-2943 | Msa1359030:CDS | 40.0% |
| ! | TCTGTTGGCGAATTTGTTTG+GGG | - | tig0016634:2939-2958 | Msa1359030:CDS | 40.0% |
| GAAAGATTAAGAGTCATCCG+TGG | - | tig0016634:2961-2980 | Msa1359030:intron | 40.0% | |
| ! | CTCTTGGTAGCTTACTTTGA+TGG | - | tig0016634:3051-3070 | Msa1359030:intron | 40.0% |
| ! | TTTGATGATATGGTGAGACG+AGG | - | tig0016634:3123-3142 | Msa1359030:intron | 40.0% |
| TACAGCTTCTTGAACAGCAT+AGG | + | tig0016634:3166-3185 | Msa1359030:intergenic | 40.0% | |
| CAAGAAGCTGTAAATGAGGT+TGG | - | tig0016634:3174-3193 | Msa1359030:intron | 40.0% | |
| AAGCTGTAAATGAGGTTGGA+AGG | - | tig0016634:3178-3197 | Msa1359030:intron | 40.0% | |
| AGCTGTAAATGAGGTTGGAA+GGG | - | tig0016634:3179-3198 | Msa1359030:intron | 40.0% | |
| ! | CCTGAATTTTTCGCCAACAT+TGG | + | tig0016634:3267-3286 | Msa1359030:intergenic | 40.0% |
| CCAATGTTGGCGAAAAATTC+AGG | - | tig0016634:3264-3283 | Msa1359030:intron | 40.0% | |
| GGCGAAAAATTCAGGAATCA+AGG | - | tig0016634:3272-3291 | Msa1359030:intron | 40.0% | |
| TACAACGTTGTAGCTGTTGT+AGG | - | tig0016634:3537-3556 | Msa1359030:intron | 40.0% | |
| TTTGTTGCAGATTTGCGATG+AGG | - | tig0016634:3916-3935 | Msa1359030:CDS | 40.0% | |
| ! | GAAAGGTGTGACATTTCTGT+TGG | - | tig0016634:2924-2943 | Msa1359030:CDS | 40.0% |
| ! | TCTGTTGGCGAATTTGTTTG+GGG | - | tig0016634:2939-2958 | Msa1359030:CDS | 40.0% |
| GAAAGATTAAGAGTCATCCG+TGG | - | tig0016634:2961-2980 | Msa1359030:intron | 40.0% | |
| ! | CTCTTGGTAGCTTACTTTGA+TGG | - | tig0016634:3051-3070 | Msa1359030:intron | 40.0% |
| ! | TTTGATGATATGGTGAGACG+AGG | - | tig0016634:3123-3142 | Msa1359030:intron | 40.0% |
| TACAGCTTCTTGAACAGCAT+AGG | + | tig0016634:3166-3185 | Msa1359030:intergenic | 40.0% | |
| CAAGAAGCTGTAAATGAGGT+TGG | - | tig0016634:3174-3193 | Msa1359030:intron | 40.0% | |
| AAGCTGTAAATGAGGTTGGA+AGG | - | tig0016634:3178-3197 | Msa1359030:intron | 40.0% | |
| AGCTGTAAATGAGGTTGGAA+GGG | - | tig0016634:3179-3198 | Msa1359030:intron | 40.0% | |
| ! | CCTGAATTTTTCGCCAACAT+TGG | + | tig0016634:3267-3286 | Msa1359030:intergenic | 40.0% |
| CCAATGTTGGCGAAAAATTC+AGG | - | tig0016634:3264-3283 | Msa1359030:intron | 40.0% | |
| GGCGAAAAATTCAGGAATCA+AGG | - | tig0016634:3272-3291 | Msa1359030:intron | 40.0% | |
| TACAACGTTGTAGCTGTTGT+AGG | - | tig0016634:3537-3556 | Msa1359030:intron | 40.0% | |
| TTTGTTGCAGATTTGCGATG+AGG | - | tig0016634:3916-3935 | Msa1359030:CDS | 40.0% | |
| AGATTAAGAGTCATCCGTGG+TGG | - | tig0016634:2964-2983 | Msa1359030:intron | 45.0% | |
| TTATGATCCGTCTGATGCGT+CGG | - | tig0016634:2998-3017 | Msa1359030:intron | 45.0% | |
| AAATGAGGTTGGAAGGGTTC+TGG | - | tig0016634:3185-3204 | Msa1359030:intron | 45.0% | |
| !! | GAGTCGTTCGTTTGTTGTTG+CGG | - | tig0016634:3218-3237 | Msa1359030:intron | 45.0% |
| !! | AGTCGTTCGTTTGTTGTTGC+GGG | - | tig0016634:3219-3238 | Msa1359030:intron | 45.0% |
| GTCTGAATTCGCTCCAATGT+TGG | - | tig0016634:3251-3270 | Msa1359030:intron | 45.0% | |
| !! | GGTGTTTTTGTGCCAGATAG+TGG | - | tig0016634:3297-3316 | Msa1359030:intron | 45.0% |
| !! | TAGTGGCACAGAGAGCATTT+CGG | - | tig0016634:3314-3333 | Msa1359030:intron | 45.0% |
| CCTTGAGAAAGTAACTCAGC+CGG | + | tig0016634:3354-3373 | Msa1359030:intergenic | 45.0% | |
| AGATTAAGAGTCATCCGTGG+TGG | - | tig0016634:2964-2983 | Msa1359030:intron | 45.0% | |
| TTATGATCCGTCTGATGCGT+CGG | - | tig0016634:2998-3017 | Msa1359030:intron | 45.0% | |
| AAATGAGGTTGGAAGGGTTC+TGG | - | tig0016634:3185-3204 | Msa1359030:intron | 45.0% | |
| !! | GAGTCGTTCGTTTGTTGTTG+CGG | - | tig0016634:3218-3237 | Msa1359030:intron | 45.0% |
| !! | AGTCGTTCGTTTGTTGTTGC+GGG | - | tig0016634:3219-3238 | Msa1359030:intron | 45.0% |
| GTCTGAATTCGCTCCAATGT+TGG | - | tig0016634:3251-3270 | Msa1359030:intron | 45.0% | |
| !! | GGTGTTTTTGTGCCAGATAG+TGG | - | tig0016634:3297-3316 | Msa1359030:intron | 45.0% |
| !! | TAGTGGCACAGAGAGCATTT+CGG | - | tig0016634:3314-3333 | Msa1359030:intron | 45.0% |
| CCTTGAGAAAGTAACTCAGC+CGG | + | tig0016634:3354-3373 | Msa1359030:intergenic | 45.0% | |
| GACGGATCATAAACCCAACC+TGG | + | tig0016634:2990-3009 | Msa1359030:intergenic | 50.0% | |
| ! | AAGGCTTCAATTGTGACGGG+TGG | + | tig0016634:3092-3111 | Msa1359030:intergenic | 50.0% |
| !! | GTCGTTCGTTTGTTGTTGCG+GGG | - | tig0016634:3220-3239 | Msa1359030:intron | 50.0% |
| !! | TCGTTCGTTTGTTGTTGCGG+GGG | - | tig0016634:3221-3240 | Msa1359030:intron | 50.0% |
| ! | ATGCTCTCTGTGCCACTATC+TGG | + | tig0016634:3312-3331 | Msa1359030:intergenic | 50.0% |
| TTCGGCGGTTACACTTGAAC+CGG | - | tig0016634:3332-3351 | Msa1359030:intron | 50.0% | |
| ! | CCGGCTGAGTTACTTTCTCA+AGG | - | tig0016634:3351-3370 | Msa1359030:intron | 50.0% |
| GACGGATCATAAACCCAACC+TGG | + | tig0016634:2990-3009 | Msa1359030:intergenic | 50.0% | |
| ! | AAGGCTTCAATTGTGACGGG+TGG | + | tig0016634:3092-3111 | Msa1359030:intergenic | 50.0% |
| !! | GTCGTTCGTTTGTTGTTGCG+GGG | - | tig0016634:3220-3239 | Msa1359030:intron | 50.0% |
| !! | TCGTTCGTTTGTTGTTGCGG+GGG | - | tig0016634:3221-3240 | Msa1359030:intron | 50.0% |
| ! | ATGCTCTCTGTGCCACTATC+TGG | + | tig0016634:3312-3331 | Msa1359030:intergenic | 50.0% |
| TTCGGCGGTTACACTTGAAC+CGG | - | tig0016634:3332-3351 | Msa1359030:intron | 50.0% | |
| ! | CCGGCTGAGTTACTTTCTCA+AGG | - | tig0016634:3351-3370 | Msa1359030:intron | 50.0% |
| TAAACCCAACCTGGCCACCA+CGG | + | tig0016634:2981-3000 | Msa1359030:intergenic | 55.0% | |
| GCAAGTTCCGACGCATCAGA+CGG | + | tig0016634:3008-3027 | Msa1359030:intergenic | 55.0% | |
| !! | TGGCACAGAGAGCATTTCGG+CGG | - | tig0016634:3317-3336 | Msa1359030:intron | 55.0% |
| TAAACCCAACCTGGCCACCA+CGG | + | tig0016634:2981-3000 | Msa1359030:intergenic | 55.0% | |
| GCAAGTTCCGACGCATCAGA+CGG | + | tig0016634:3008-3027 | Msa1359030:intergenic | 55.0% | |
| !! | TGGCACAGAGAGCATTTCGG+CGG | - | tig0016634:3317-3336 | Msa1359030:intron | 55.0% |
| AAGAGTCATCCGTGGTGGCC+AGG | - | tig0016634:2969-2988 | Msa1359030:intron | 60.0% | |
| TCATCCGTGGTGGCCAGGTT+GGG | - | tig0016634:2974-2993 | Msa1359030:intron | 60.0% | |
| AAGAGTCATCCGTGGTGGCC+AGG | - | tig0016634:2969-2988 | Msa1359030:intron | 60.0% | |
| TCATCCGTGGTGGCCAGGTT+GGG | - | tig0016634:2974-2993 | Msa1359030:intron | 60.0% | |
| GTCATCCGTGGTGGCCAGGT+TGG | - | tig0016634:2973-2992 | Msa1359030:intron | 65.0% | |
| GTCATCCGTGGTGGCCAGGT+TGG | - | tig0016634:2973-2992 | Msa1359030:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016634 | gene | 2922 | 3976 | 2922 | ID=Msa1359030;Name=Msa1359030 |
| tig0016634 | mRNA | 2922 | 3976 | 2922 | ID=Msa1359030-mRNA-1;Parent=Msa1359030;Name=Msa1359030-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|0.66|1|1|3|0|117 |
| tig0016634 | exon | 3908 | 3976 | 3908 | ID=Msa1359030-mRNA-1:exon:11163;Parent=Msa1359030-mRNA-1 |
| tig0016634 | exon | 3560 | 3790 | 3560 | ID=Msa1359030-mRNA-1:exon:11162;Parent=Msa1359030-mRNA-1 |
| tig0016634 | exon | 2922 | 2972 | 2922 | ID=Msa1359030-mRNA-1:exon:11161;Parent=Msa1359030-mRNA-1 |
| tig0016634 | CDS | 3908 | 3976 | 3908 | ID=Msa1359030-mRNA-1:cds;Parent=Msa1359030-mRNA-1 |
| tig0016634 | CDS | 3560 | 3790 | 3560 | ID=Msa1359030-mRNA-1:cds;Parent=Msa1359030-mRNA-1 |
| tig0016634 | CDS | 2922 | 2972 | 2922 | ID=Msa1359030-mRNA-1:cds;Parent=Msa1359030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
