AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0711890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711890 MtrunA17_Chr5g0396321 98.507 67 1 0 31 97 691 757 9.92e-43 147
Msa0711890 MtrunA17_Chr6g0488821 79.365 63 13 0 32 94 704 766 5.70e-31 114
Msa0711890 MtrunA17_Chr7g0238841 76.190 63 15 0 32 94 450 512 1.60e-29 109
Msa0711890 MtrunA17_Chr6g0486411 75.000 64 15 1 32 94 222 285 4.49e-29 105
Msa0711890 MtrunA17_Chr4g0000131 70.968 62 18 0 32 93 694 755 5.14e-28 105
Msa0711890 MtrunA17_Chr4g0020031 69.355 62 19 0 32 93 695 756 3.04e-27 103
Msa0711890 MtrunA17_Chr4g0000191 67.742 62 20 0 32 93 439 500 2.06e-25 98.2
Msa0711890 MtrunA17_Chr8g0342291 60.317 63 25 0 32 94 537 599 1.85e-24 95.5
Msa0711890 MtrunA17_Chr7g0228111 66.129 62 21 0 32 93 695 756 9.15e-24 93.6
Msa0711890 MtrunA17_Chr6g0488871 72.917 48 13 0 47 94 4 51 2.55e-23 84.7
Msa0711890 MtrunA17_Chr8g0342311 58.730 63 26 0 32 94 454 516 3.39e-23 92.0
Msa0711890 MtrunA17_Chr3g0090601 64.516 62 22 0 32 93 625 686 1.33e-22 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711890 AT2G07050.2 82.540 63 11 0 32 94 601 663 3.41e-32 118
Msa0711890 AT2G07050.1 82.540 63 11 0 32 94 692 754 3.67e-32 118
Msa0711890 AT3G45130.4 76.190 63 15 0 32 94 692 754 8.88e-32 117
Msa0711890 AT3G45130.1 76.190 63 15 0 32 94 692 754 8.88e-32 117
Msa0711890 AT3G45130.5 76.190 63 15 0 32 94 692 754 8.88e-32 117
Msa0711890 AT3G45130.2 76.190 63 15 0 32 94 692 754 9.62e-32 117
Msa0711890 AT3G45130.3 76.190 63 15 0 32 94 692 754 9.62e-32 117
Msa0711890 AT1G78955.5 75.806 62 15 0 32 93 520 581 6.49e-29 108
Msa0711890 AT1G78955.1 75.806 62 15 0 32 93 695 756 7.23e-29 108
Msa0711890 AT1G78955.4 75.806 62 15 0 32 93 630 691 8.01e-29 108
Msa0711890 AT1G78960.5 67.692 65 21 0 32 96 544 608 6.27e-27 103
Msa0711890 AT1G78960.2 67.692 65 21 0 32 96 695 759 6.89e-27 103
Msa0711890 AT1G78960.1 67.692 65 21 0 32 96 695 759 6.89e-27 103
Msa0711890 AT1G78960.3 67.692 65 21 0 32 96 695 759 6.89e-27 103
Msa0711890 AT1G78950.1 67.742 62 20 0 32 93 695 756 1.22e-25 99.4
Msa0711890 AT1G78950.2 67.742 62 20 0 32 93 704 765 1.49e-24 96.3
Msa0711890 AT1G78970.1 65.079 63 22 0 32 94 692 754 6.45e-24 94.7
Msa0711890 AT1G78970.2 65.079 63 22 0 32 94 692 754 6.45e-24 94.7
Msa0711890 AT1G78970.3 65.079 63 22 0 32 94 692 754 6.45e-24 94.7
Msa0711890 AT1G78500.2 66.667 60 20 0 32 91 701 760 1.52e-22 90.5
Msa0711890 AT1G78500.1 66.667 60 20 0 32 91 701 760 1.52e-22 90.5
Msa0711890 AT4G15370.1 63.333 60 22 0 32 91 695 754 1.21e-21 88.2
Msa0711890 AT4G15370.2 63.333 60 22 0 32 91 692 751 1.32e-21 88.2
Msa0711890 AT3G29255.1 60.000 60 24 0 32 91 641 700 2.95e-20 84.3
Msa0711890 AT1G66960.2 58.333 60 25 0 32 91 704 763 6.20e-20 83.2
Msa0711890 AT1G66960.3 58.333 60 25 0 32 91 695 754 6.51e-20 83.2
Msa0711890 AT1G66960.1 58.333 60 25 0 32 91 695 754 6.51e-20 83.2
Msa0711890 AT1G66960.4 58.333 60 25 0 32 91 695 754 6.51e-20 83.2
Msa0711890 AT4G15340.1 58.621 58 24 0 32 89 700 757 1.44e-19 82.0
Msa0711890 AT5G48010.1 58.621 58 24 0 32 89 692 749 1.93e-19 81.6
Msa0711890 AT5G48010.2 58.621 58 24 0 32 89 700 757 2.13e-19 81.6
Msa0711890 AT5G36150.1 54.839 62 28 0 32 93 695 756 6.21e-19 80.5
Msa0711890 AT5G36150.2 54.839 62 28 0 32 93 695 756 6.21e-19 80.5
Msa0711890 AT5G42600.1 52.459 61 28 1 29 89 693 752 1.19e-15 70.9

Find 48 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCAATCATTGTATTTC+AGG 0.148173 5_1:+3766745 None:intergenic
TCTACCATTTCAGGAAATAA+TGG 0.264459 5_1:-3766399 Msa0711890:intron
CAGAGAGTGACTAAATTTAT+AGG 0.291444 5_1:-3766159 Msa0711890:three_prime_UTR
CTACCATTTCAGGAAATAAT+GGG 0.377145 5_1:-3766398 Msa0711890:intron
GAACCATGGAGGATGGTAAA+AGG 0.379088 5_1:+3766235 None:intergenic
AGTTGTGTATTTGTAGTCAT+TGG 0.382092 5_1:-3766093 Msa0711890:three_prime_UTR
CCTGTTTCATTATATCGAAA+TGG 0.386161 5_1:+3766579 None:intergenic
CTGTTGATTTCACTTTAGAT+AGG 0.394234 5_1:-3766279 Msa0711890:exon
CCATTTCGATATAATGAAAC+AGG 0.397404 5_1:-3766579 Msa0711890:CDS
AAAATATCCTCCCTGTCAAT+TGG 0.404977 5_1:+3765998 None:intergenic
AGTGTCCTCTATTATGTGTT+TGG 0.411221 5_1:-3765874 Msa0711890:three_prime_UTR
TTAGTCACTCTCTGTTTAGC+AGG 0.425637 5_1:+3766168 None:intergenic
ACAGAAACATATTCCCCATA+TGG 0.426625 5_1:-3766337 Msa0711890:CDS
CAGTGGTGTTGGATCTCTCT+TGG 0.433214 5_1:+3766556 None:intergenic
GAAATATGTGGTGGGTCAAA+AGG 0.444489 5_1:-3766039 Msa0711890:three_prime_UTR
GTATTCTCCCAACGCCCATA+TGG 0.453168 5_1:+3766322 None:intergenic
TATTCTCCCAACGCCCATAT+GGG 0.459458 5_1:+3766323 None:intergenic
CTATCTAAAGTGAAATCAAC+AGG 0.464113 5_1:+3766280 None:intergenic
AAAGCAATCATTGTATTTCA+GGG 0.472994 5_1:+3766746 None:intergenic
GTCCTCTATTATGTGTTTGG+CGG 0.484806 5_1:-3765871 Msa0711890:three_prime_UTR
ATATTCCCCATATGGGCGTT+GGG 0.489177 5_1:-3766329 Msa0711890:CDS
TTGGTTTGTGAGGAGAAAGT+TGG 0.489942 5_1:-3765968 Msa0711890:three_prime_UTR
TGACTTATGAGTTCGGTGTT+CGG 0.490559 5_1:-3766194 Msa0711890:three_prime_UTR
ATGCTTGATAAATTCTCAAA+TGG 0.493806 5_1:-3766519 Msa0711890:CDS
ATAATAGAGGACACTCTAGT+TGG 0.503188 5_1:+3765882 None:intergenic
CATATTCCCCATATGGGCGT+TGG 0.506392 5_1:-3766330 Msa0711890:CDS
AAGTTTATGACTTATGAGTT+CGG 0.507498 5_1:-3766201 Msa0711890:three_prime_UTR
GCTGCGCGGTGCAGTGGTGT+TGG 0.509005 5_1:+3766545 None:intergenic
ATAAATTCTCAAATGGAGAA+TGG 0.509659 5_1:-3766512 Msa0711890:CDS
CATACAGCTGCGCGGTGCAG+TGG 0.527189 5_1:+3766539 None:intergenic
TTTAAGGTGGTTGGTTTGTG+AGG 0.529431 5_1:-3765978 Msa0711890:three_prime_UTR
CAGAAACATATTCCCCATAT+GGG 0.533568 5_1:-3766336 Msa0711890:CDS
TACCGCCAAACACATAATAG+AGG 0.545956 5_1:+3765869 None:intergenic
GAATGGTGACTTTCCGCAAG+AGG 0.565873 5_1:-3766495 Msa0711890:intron
AAGAAGAGAACCATGGAGGA+TGG 0.589353 5_1:+3766228 None:intergenic
GTCTTCAACAATACCTCTTG+CGG 0.602182 5_1:+3766482 None:intergenic
AAAGGTTGAAATAATTCGAA+CGG 0.602830 5_1:+3766253 None:intergenic
ATTCTCCCAACGCCCATATG+GGG 0.616092 5_1:+3766324 None:intergenic
TTTGTTCAATCCAATTGACA+GGG 0.626549 5_1:-3766008 Msa0711890:three_prime_UTR
GTTCAATCCAATTGACAGGG+AGG 0.635827 5_1:-3766005 Msa0711890:three_prime_UTR
TATAAACTCTCTGTTTGTAG+CGG 0.648369 5_1:-3765848 Msa0711890:three_prime_UTR
ATCAATGTATGAGAAATATG+TGG 0.674004 5_1:-3766051 Msa0711890:three_prime_UTR
GCAATCATTGTATTTCAGGG+TGG 0.678538 5_1:+3766749 None:intergenic
AATGTATGAGAAATATGTGG+TGG 0.684248 5_1:-3766048 Msa0711890:three_prime_UTR
ATGTATGAGAAATATGTGGT+GGG 0.691708 5_1:-3766047 Msa0711890:three_prime_UTR
TTTCAAGAAGAGAACCATGG+AGG 0.696454 5_1:+3766224 None:intergenic
AGGTCTGCAATACATGACGA+CGG 0.735163 5_1:+3766300 None:intergenic
TTATCAAGCATACAGCTGCG+CGG 0.750861 5_1:+3766531 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATTTAAAATATATACAT+GGG + chr5_1:3766151-3766170 None:intergenic 10.0%
!!! TATAACAGTAAATATTTTTA+TGG - chr5_1:3766658-3766677 Msa0711890:intron 10.0%
!!! ATAACAGTAAATATTTTTAT+GGG - chr5_1:3766659-3766678 Msa0711890:intron 10.0%
!!! ATGATTTAAAATATATACAT+GGG + chr5_1:3766151-3766170 None:intergenic 10.0%
!!! TATAACAGTAAATATTTTTA+TGG - chr5_1:3766658-3766677 Msa0711890:intron 10.0%
!!! ATAACAGTAAATATTTTTAT+GGG - chr5_1:3766659-3766678 Msa0711890:intron 10.0%
!!! CATGATTTAAAATATATACA+TGG + chr5_1:3766152-3766171 None:intergenic 15.0%
!!! CATGATTTAAAATATATACA+TGG + chr5_1:3766152-3766171 None:intergenic 15.0%
!! TGACAAGTATTCAATTATTT+GGG + chr5_1:3765912-3765931 None:intergenic 20.0%
!! TTGACAAGTATTCAATTATT+TGG + chr5_1:3765913-3765932 None:intergenic 20.0%
!! TGACAAGTATTCAATTATTT+GGG + chr5_1:3765912-3765931 None:intergenic 20.0%
!! TTGACAAGTATTCAATTATT+TGG + chr5_1:3765913-3765932 None:intergenic 20.0%
! AAAGCAATCATTGTATTTCA+GGG + chr5_1:3765835-3765854 None:intergenic 25.0%
! AAAAGCAATCATTGTATTTC+AGG + chr5_1:3765836-3765855 None:intergenic 25.0%
! CAGAATCAGGATTATATATA+CGG + chr5_1:3765956-3765975 None:intergenic 25.0%
! ATGCTTGATAAATTCTCAAA+TGG - chr5_1:3766059-3766078 Msa0711890:three_prime_UTR 25.0%
! ATAAATTCTCAAATGGAGAA+TGG - chr5_1:3766066-3766085 Msa0711890:three_prime_UTR 25.0%
! AATATATACATGGGTAAAGA+GGG + chr5_1:3766142-3766161 None:intergenic 25.0%
! AAATATATACATGGGTAAAG+AGG + chr5_1:3766143-3766162 None:intergenic 25.0%
! AAAGGTTGAAATAATTCGAA+CGG + chr5_1:3766328-3766347 None:intergenic 25.0%
! AAGTTTATGACTTATGAGTT+CGG - chr5_1:3766377-3766396 Msa0711890:CDS 25.0%
! ATCAATGTATGAGAAATATG+TGG - chr5_1:3766527-3766546 Msa0711890:CDS 25.0%
! AAAGCAATCATTGTATTTCA+GGG + chr5_1:3765835-3765854 None:intergenic 25.0%
! AAAAGCAATCATTGTATTTC+AGG + chr5_1:3765836-3765855 None:intergenic 25.0%
! CAGAATCAGGATTATATATA+CGG + chr5_1:3765956-3765975 None:intergenic 25.0%
! ATGCTTGATAAATTCTCAAA+TGG - chr5_1:3766059-3766078 Msa0711890:three_prime_UTR 25.0%
! ATAAATTCTCAAATGGAGAA+TGG - chr5_1:3766066-3766085 Msa0711890:three_prime_UTR 25.0%
! AATATATACATGGGTAAAGA+GGG + chr5_1:3766142-3766161 None:intergenic 25.0%
! AAATATATACATGGGTAAAG+AGG + chr5_1:3766143-3766162 None:intergenic 25.0%
! AAAGGTTGAAATAATTCGAA+CGG + chr5_1:3766328-3766347 None:intergenic 25.0%
! AAGTTTATGACTTATGAGTT+CGG - chr5_1:3766377-3766396 Msa0711890:CDS 25.0%
! ATCAATGTATGAGAAATATG+TGG - chr5_1:3766527-3766546 Msa0711890:CDS 25.0%
TATTCTTCTACAACAGAATC+AGG + chr5_1:3765969-3765988 None:intergenic 30.0%
CCTGTTTCATTATATCGAAA+TGG + chr5_1:3766002-3766021 None:intergenic 30.0%
CCATTTCGATATAATGAAAC+AGG - chr5_1:3765999-3766018 Msa0711890:three_prime_UTR 30.0%
GGAGTAAAAACAGAGTTATA+TGG + chr5_1:3766121-3766140 None:intergenic 30.0%
TGTTACTATTCTACCATTTC+AGG - chr5_1:3766170-3766189 Msa0711890:three_prime_UTR 30.0%
TCTACCATTTCAGGAAATAA+TGG - chr5_1:3766179-3766198 Msa0711890:three_prime_UTR 30.0%
CTACCATTTCAGGAAATAAT+GGG - chr5_1:3766180-3766199 Msa0711890:three_prime_UTR 30.0%
! CTATCTAAAGTGAAATCAAC+AGG + chr5_1:3766301-3766320 None:intergenic 30.0%
!! CTGTTGATTTCACTTTAGAT+AGG - chr5_1:3766299-3766318 Msa0711890:CDS 30.0%
CAGAGAGTGACTAAATTTAT+AGG - chr5_1:3766419-3766438 Msa0711890:intron 30.0%
AGTTGTGTATTTGTAGTCAT+TGG - chr5_1:3766485-3766504 Msa0711890:intron 30.0%
AATGTATGAGAAATATGTGG+TGG - chr5_1:3766530-3766549 Msa0711890:CDS 30.0%
ATGTATGAGAAATATGTGGT+GGG - chr5_1:3766531-3766550 Msa0711890:CDS 30.0%
! TTTTGTTCAATCCAATTGAC+AGG - chr5_1:3766569-3766588 Msa0711890:CDS 30.0%
TTTGTTCAATCCAATTGACA+GGG - chr5_1:3766570-3766589 Msa0711890:CDS 30.0%
TATAAACTCTCTGTTTGTAG+CGG - chr5_1:3766730-3766749 Msa0711890:intron 30.0%
TATTCTTCTACAACAGAATC+AGG + chr5_1:3765969-3765988 None:intergenic 30.0%
CCTGTTTCATTATATCGAAA+TGG + chr5_1:3766002-3766021 None:intergenic 30.0%
CCATTTCGATATAATGAAAC+AGG - chr5_1:3765999-3766018 Msa0711890:three_prime_UTR 30.0%
GGAGTAAAAACAGAGTTATA+TGG + chr5_1:3766121-3766140 None:intergenic 30.0%
TGTTACTATTCTACCATTTC+AGG - chr5_1:3766170-3766189 Msa0711890:three_prime_UTR 30.0%
TCTACCATTTCAGGAAATAA+TGG - chr5_1:3766179-3766198 Msa0711890:three_prime_UTR 30.0%
CTACCATTTCAGGAAATAAT+GGG - chr5_1:3766180-3766199 Msa0711890:three_prime_UTR 30.0%
! CTATCTAAAGTGAAATCAAC+AGG + chr5_1:3766301-3766320 None:intergenic 30.0%
!! CTGTTGATTTCACTTTAGAT+AGG - chr5_1:3766299-3766318 Msa0711890:CDS 30.0%
CAGAGAGTGACTAAATTTAT+AGG - chr5_1:3766419-3766438 Msa0711890:intron 30.0%
AGTTGTGTATTTGTAGTCAT+TGG - chr5_1:3766485-3766504 Msa0711890:intron 30.0%
AATGTATGAGAAATATGTGG+TGG - chr5_1:3766530-3766549 Msa0711890:CDS 30.0%
ATGTATGAGAAATATGTGGT+GGG - chr5_1:3766531-3766550 Msa0711890:CDS 30.0%
! TTTTGTTCAATCCAATTGAC+AGG - chr5_1:3766569-3766588 Msa0711890:CDS 30.0%
TTTGTTCAATCCAATTGACA+GGG - chr5_1:3766570-3766589 Msa0711890:CDS 30.0%
TATAAACTCTCTGTTTGTAG+CGG - chr5_1:3766730-3766749 Msa0711890:intron 30.0%
ACTCCCATTATTTCCTGAAA+TGG + chr5_1:3766186-3766205 None:intergenic 35.0%
ACAGAAACATATTCCCCATA+TGG - chr5_1:3766241-3766260 Msa0711890:three_prime_UTR 35.0%
CAGAAACATATTCCCCATAT+GGG - chr5_1:3766242-3766261 Msa0711890:three_prime_UTR 35.0%
!!! CTTTTTCAAGAAGAGAACCA+TGG + chr5_1:3766360-3766379 None:intergenic 35.0%
AAAATATCCTCCCTGTCAAT+TGG + chr5_1:3766583-3766602 None:intergenic 35.0%
! TTGACAGGGAGGATATTTTA+AGG - chr5_1:3766584-3766603 Msa0711890:CDS 35.0%
ATAATAGAGGACACTCTAGT+TGG + chr5_1:3766699-3766718 None:intergenic 35.0%
AGTGTCCTCTATTATGTGTT+TGG - chr5_1:3766704-3766723 Msa0711890:intron 35.0%
ACTCCCATTATTTCCTGAAA+TGG + chr5_1:3766186-3766205 None:intergenic 35.0%
ACAGAAACATATTCCCCATA+TGG - chr5_1:3766241-3766260 Msa0711890:three_prime_UTR 35.0%
CAGAAACATATTCCCCATAT+GGG - chr5_1:3766242-3766261 Msa0711890:three_prime_UTR 35.0%
!!! CTTTTTCAAGAAGAGAACCA+TGG + chr5_1:3766360-3766379 None:intergenic 35.0%
AAAATATCCTCCCTGTCAAT+TGG + chr5_1:3766583-3766602 None:intergenic 35.0%
! TTGACAGGGAGGATATTTTA+AGG - chr5_1:3766584-3766603 Msa0711890:CDS 35.0%
ATAATAGAGGACACTCTAGT+TGG + chr5_1:3766699-3766718 None:intergenic 35.0%
AGTGTCCTCTATTATGTGTT+TGG - chr5_1:3766704-3766723 Msa0711890:intron 35.0%
GCAATCATTGTATTTCAGGG+TGG + chr5_1:3765832-3765851 None:intergenic 40.0%
TATAGAAACCCAGAATGCAG+TGG + chr5_1:3765866-3765885 None:intergenic 40.0%
GTCTTCAACAATACCTCTTG+CGG + chr5_1:3766099-3766118 None:intergenic 40.0%
TTTCAAGAAGAGAACCATGG+AGG + chr5_1:3766357-3766376 None:intergenic 40.0%
!! TGACTTATGAGTTCGGTGTT+CGG - chr5_1:3766384-3766403 Msa0711890:CDS 40.0%
TTAGTCACTCTCTGTTTAGC+AGG + chr5_1:3766413-3766432 None:intergenic 40.0%
!! TCGCTCTTCTTTTTAGCACA+AGG - chr5_1:3766457-3766476 Msa0711890:intron 40.0%
!! GAAATATGTGGTGGGTCAAA+AGG - chr5_1:3766539-3766558 Msa0711890:CDS 40.0%
!! ACAGGGAGGATATTTTAAGG+TGG - chr5_1:3766587-3766606 Msa0711890:CDS 40.0%
!!! GGAGGATATTTTAAGGTGGT+TGG - chr5_1:3766591-3766610 Msa0711890:CDS 40.0%
!! TTTAAGGTGGTTGGTTTGTG+AGG - chr5_1:3766600-3766619 Msa0711890:intron 40.0%
!! TTGGTTTGTGAGGAGAAAGT+TGG - chr5_1:3766610-3766629 Msa0711890:intron 40.0%
GTCCTCTATTATGTGTTTGG+CGG - chr5_1:3766707-3766726 Msa0711890:intron 40.0%
TACCGCCAAACACATAATAG+AGG + chr5_1:3766712-3766731 None:intergenic 40.0%
GCAATCATTGTATTTCAGGG+TGG + chr5_1:3765832-3765851 None:intergenic 40.0%
TATAGAAACCCAGAATGCAG+TGG + chr5_1:3765866-3765885 None:intergenic 40.0%
GTCTTCAACAATACCTCTTG+CGG + chr5_1:3766099-3766118 None:intergenic 40.0%
TTTCAAGAAGAGAACCATGG+AGG + chr5_1:3766357-3766376 None:intergenic 40.0%
!! TGACTTATGAGTTCGGTGTT+CGG - chr5_1:3766384-3766403 Msa0711890:CDS 40.0%
TTAGTCACTCTCTGTTTAGC+AGG + chr5_1:3766413-3766432 None:intergenic 40.0%
!! TCGCTCTTCTTTTTAGCACA+AGG - chr5_1:3766457-3766476 Msa0711890:intron 40.0%
!! GAAATATGTGGTGGGTCAAA+AGG - chr5_1:3766539-3766558 Msa0711890:CDS 40.0%
!! ACAGGGAGGATATTTTAAGG+TGG - chr5_1:3766587-3766606 Msa0711890:CDS 40.0%
!!! GGAGGATATTTTAAGGTGGT+TGG - chr5_1:3766591-3766610 Msa0711890:CDS 40.0%
!! TTTAAGGTGGTTGGTTTGTG+AGG - chr5_1:3766600-3766619 Msa0711890:intron 40.0%
!! TTGGTTTGTGAGGAGAAAGT+TGG - chr5_1:3766610-3766629 Msa0711890:intron 40.0%
GTCCTCTATTATGTGTTTGG+CGG - chr5_1:3766707-3766726 Msa0711890:intron 40.0%
TACCGCCAAACACATAATAG+AGG + chr5_1:3766712-3766731 None:intergenic 40.0%
TTCTGTTTGCCACTGCATTC+TGG - chr5_1:3765854-3765873 Msa0711890:three_prime_UTR 45.0%
TCTGTTTGCCACTGCATTCT+GGG - chr5_1:3765855-3765874 Msa0711890:three_prime_UTR 45.0%
TTATCAAGCATACAGCTGCG+CGG + chr5_1:3766050-3766069 None:intergenic 45.0%
ATATTCCCCATATGGGCGTT+GGG - chr5_1:3766249-3766268 Msa0711890:three_prime_UTR 45.0%
TATTCTCCCAACGCCCATAT+GGG + chr5_1:3766258-3766277 None:intergenic 45.0%
AGGTCTGCAATACATGACGA+CGG + chr5_1:3766281-3766300 None:intergenic 45.0%
! CAACCTTTTACCATCCTCCA+TGG - chr5_1:3766340-3766359 Msa0711890:CDS 45.0%
GAACCATGGAGGATGGTAAA+AGG + chr5_1:3766346-3766365 None:intergenic 45.0%
AAGAAGAGAACCATGGAGGA+TGG + chr5_1:3766353-3766372 None:intergenic 45.0%
GTTCAATCCAATTGACAGGG+AGG - chr5_1:3766573-3766592 Msa0711890:CDS 45.0%
TTCTGTTTGCCACTGCATTC+TGG - chr5_1:3765854-3765873 Msa0711890:three_prime_UTR 45.0%
TCTGTTTGCCACTGCATTCT+GGG - chr5_1:3765855-3765874 Msa0711890:three_prime_UTR 45.0%
TTATCAAGCATACAGCTGCG+CGG + chr5_1:3766050-3766069 None:intergenic 45.0%
ATATTCCCCATATGGGCGTT+GGG - chr5_1:3766249-3766268 Msa0711890:three_prime_UTR 45.0%
TATTCTCCCAACGCCCATAT+GGG + chr5_1:3766258-3766277 None:intergenic 45.0%
AGGTCTGCAATACATGACGA+CGG + chr5_1:3766281-3766300 None:intergenic 45.0%
! CAACCTTTTACCATCCTCCA+TGG - chr5_1:3766340-3766359 Msa0711890:CDS 45.0%
GAACCATGGAGGATGGTAAA+AGG + chr5_1:3766346-3766365 None:intergenic 45.0%
AAGAAGAGAACCATGGAGGA+TGG + chr5_1:3766353-3766372 None:intergenic 45.0%
GTTCAATCCAATTGACAGGG+AGG - chr5_1:3766573-3766592 Msa0711890:CDS 45.0%
! CAGTGGTGTTGGATCTCTCT+TGG + chr5_1:3766025-3766044 None:intergenic 50.0%
GAATGGTGACTTTCCGCAAG+AGG - chr5_1:3766083-3766102 Msa0711890:three_prime_UTR 50.0%
CATATTCCCCATATGGGCGT+TGG - chr5_1:3766248-3766267 Msa0711890:three_prime_UTR 50.0%
ATTCTCCCAACGCCCATATG+GGG + chr5_1:3766257-3766276 None:intergenic 50.0%
GTATTCTCCCAACGCCCATA+TGG + chr5_1:3766259-3766278 None:intergenic 50.0%
! CAGTGGTGTTGGATCTCTCT+TGG + chr5_1:3766025-3766044 None:intergenic 50.0%
GAATGGTGACTTTCCGCAAG+AGG - chr5_1:3766083-3766102 Msa0711890:three_prime_UTR 50.0%
CATATTCCCCATATGGGCGT+TGG - chr5_1:3766248-3766267 Msa0711890:three_prime_UTR 50.0%
ATTCTCCCAACGCCCATATG+GGG + chr5_1:3766257-3766276 None:intergenic 50.0%
GTATTCTCCCAACGCCCATA+TGG + chr5_1:3766259-3766278 None:intergenic 50.0%
CATACAGCTGCGCGGTGCAG+TGG + chr5_1:3766042-3766061 None:intergenic 65.0%
CATACAGCTGCGCGGTGCAG+TGG + chr5_1:3766042-3766061 None:intergenic 65.0%
GCTGCGCGGTGCAGTGGTGT+TGG + chr5_1:3766036-3766055 None:intergenic 70.0%
GCTGCGCGGTGCAGTGGTGT+TGG + chr5_1:3766036-3766055 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 3765801 3766799 3765801 ID=Msa0711890;Name=Msa0711890
chr5_1 mRNA 3765801 3766799 3765801 ID=Msa0711890-mRNA-1;Parent=Msa0711890;Name=Msa0711890-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0.5|0.33|0.66|1|1|3|494|97
chr5_1 exon 3765801 3766408 3765801 ID=Msa0711890-mRNA-1:exon:1429;Parent=Msa0711890-mRNA-1
chr5_1 exon 3766496 3766618 3766496 ID=Msa0711890-mRNA-1:exon:1428;Parent=Msa0711890-mRNA-1
chr5_1 exon 3766743 3766799 3766743 ID=Msa0711890-mRNA-1:exon:1427;Parent=Msa0711890-mRNA-1
chr5_1 CDS 3766743 3766799 3766743 ID=Msa0711890-mRNA-1:cds;Parent=Msa0711890-mRNA-1
chr5_1 CDS 3766496 3766618 3766496 ID=Msa0711890-mRNA-1:cds;Parent=Msa0711890-mRNA-1
chr5_1 CDS 3766295 3766408 3766295 ID=Msa0711890-mRNA-1:cds;Parent=Msa0711890-mRNA-1
chr5_1 three_prime_UTR 3765801 3766294 3765801 ID=Msa0711890-mRNA-1:three_prime_utr;Parent=Msa0711890-mRNA-1
Gene Sequence

>Msa0711890

ATGGCTCTTTACTTTTCTGTTATGCTTGCCACCCTGAAATACAATGATTGCTTTTCTAAGAATAAAAATGATATCCATTTCGATATAATGAAACAGGCCAAGAGAGATCCAACACCACTGCACCGCGCAGCTGTATGCTTGATAAATTCTCAAATGGAGAATGGTGACTTTCCGCAAGAGGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACTTATGCTGCATACAGAAACATATTCCCCATATGGGCGTTGGGAGAATACCGTCGTCATGTATTGCAGACCTGTTGA

Protein sequence

>Msa0711890

MALYFSVMLATLKYNDCFSKNKNDIHFDIMKQAKRDPTPLHRAAVCLINSQMENGDFPQEEIMGVFNKNCMITYAAYRNIFPIWALGEYRRHVLQTC*