AlfalfaGEDB | Msa0202110

M. sativa cultivar zhongmu-4 / Msa0202110

KEGG: K03676
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF00462.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202110	AES65381.1	89.041	146	1	1	1	146	1	131	1.05e-86	259

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202110	sp\|Q8LFQ6\|GRXC4_ARATH	56.618	136	44	1	3	138	7	127	1.31e-50	160

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202110	G7IID8	89.041	146	1	1	1	146	1	131	5.00e-87	259

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003720	Msa0202110	0.809340	1.985978e-50	-8.615850e-47
Msa0004540	Msa0202110	0.801315	9.543798e-49	-8.615850e-47
Msa0010490	Msa0202110	0.811735	6.033710e-51	-8.615850e-47
Msa0010500	Msa0202110	0.801295	9.631278e-49	-8.615850e-47
Msa0017390	Msa0202110	0.813448	2.546588e-51	-8.615850e-47
Msa0020390	Msa0202110	0.833562	4.967338e-56	-8.615850e-47
Msa0029260	Msa0202110	0.808362	3.214715e-50	-8.615850e-47
Msa0031820	Msa0202110	0.812697	3.721679e-51	-8.615850e-47
Msa0033880	Msa0202110	0.872783	2.439103e-67	-8.615850e-47
Msa0037160	Msa0202110	0.816744	4.721259e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202110	MtrunA17_Chr2g0299021	89.041	146	1	1	1	146	56	186	4.17e-90	259
Msa0202110	MtrunA17_Chr5g0404751	44.203	138	60	2	1	136	4	126	5.23e-38	125
Msa0202110	MtrunA17_Chr1g0182971	36.283	113	58	1	24	136	79	177	8.53e-22	86.3
Msa0202110	MtrunA17_Chr3g0117411	40.000	100	45	1	37	136	27	111	2.17e-20	80.9
Msa0202110	MtrunA17_Chr7g0228311	38.235	102	48	1	35	136	10	96	6.27e-20	79.3
Msa0202110	MtrunA17_Chr3g0117391	39.000	100	46	1	37	136	30	114	2.12e-19	78.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202110	AT5G20500.1	56.618	136	44	1	3	138	7	127	1.33e-51	160
Msa0202110	AT1G77370.2	46.000	150	64	2	2	137	8	154	2.04e-40	133
Msa0202110	AT1G77370.1	46.324	136	58	1	2	137	8	128	6.32e-38	126
Msa0202110	AT2G20270.2	35.537	121	65	1	29	136	76	196	1.64e-21	86.3
Msa0202110	AT2G20270.1	37.963	108	53	1	29	136	76	169	3.02e-21	85.1
Msa0202110	AT5G40370.1	40.196	102	46	1	35	136	10	96	9.01e-21	81.6
Msa0202110	AT4G28730.1	37.168	113	57	1	24	136	66	164	1.58e-20	82.8
Msa0202110	AT5G40370.2	41.000	100	44	1	37	136	37	121	3.82e-18	75.9
Msa0202110	AT5G63030.1	39.175	97	44	1	40	136	31	112	1.33e-17	73.9
Msa0202110	AT4G28730.2	35.955	89	43	1	24	112	66	140	3.78e-14	65.5

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Find 41 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACCTTGGAGGATCAGA+TGG	0.593775	2_1:+24118858	Msa0202110:CDS
AACAATGATGATGGTGATGA+TGG	0.544654	2_1:+24116490	Msa0202110:CDS
AACCATCATCTGCAATGAAA+AGG	0.471141	2_1:-24118767	None:intergenic
AAGTAGCTGGAAAACTAACA+TGG	0.655102	2_1:-24119229	None:intergenic
AATGAAGGTAACAATGATGA+TGG	0.593130	2_1:+24116481	Msa0202110:exon
ACAATATGTCTTGGAAAAGA+TGG	0.515296	2_1:-24116603	None:intergenic
ACATGCTTACATGGGTGATC+TGG	0.423544	2_1:-24116314	None:intergenic
ACTGTTGAAGCGTATGAGAG+TGG	0.601661	2_1:+24118990	Msa0202110:CDS
ACTTACCATCTGATCCTCCA+AGG	0.638772	2_1:-24118863	None:intergenic
ACTTCTAGGAATTGAGACCG+TGG	0.695991	2_1:+24119025	Msa0202110:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTAACTGCCAAGAAAAAAC+CGG	-	chr2_1:24116453-24116472	None:intergenic	30.0%
AATGAAGGTAACAATGATGA+TGG	+	chr2_1:24116481-24116500	Msa0202110:exon	30.0%
ACAATATGTCTTGGAAAAGA+TGG	-	chr2_1:24116606-24116625	None:intergenic	30.0%
AAGAGGGATACAAATACTTA+CGG	-	chr2_1:24116629-24116648	None:intergenic	30.0%
TTGTGTCTATATCAATAGAG+TGG	-	chr2_1:24116734-24116753	None:intergenic	30.0%
GATATAGACACAAACACAAT+TGG	+	chr2_1:24116741-24116760	Msa0202110:intron	30.0%
CTGCTAATGTAAAAAAACAC+CGG	-	chr2_1:24117175-24117194	None:intergenic	30.0%
AACAGATAAATGTCGCTAAA+TGG	-	chr2_1:24117272-24117291	None:intergenic	30.0%
CCCAAATAAAGAACAAAAAG+AGG	-	chr2_1:24117316-24117335	None:intergenic	30.0%
TATGTACATTAGTACTCAAG+TGG	+	chr2_1:24117396-24117415	Msa0202110:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	24116223	24119317	24116223	ID=Msa0202110;Name=Msa0202110
chr2_1	mRNA	24116223	24119317	24116223	ID=Msa0202110-mRNA-1;Parent=Msa0202110;Name=Msa0202110-mRNA-1;_AED=0.12;_eAED=0.12;_QI=118\|0.75\|0.8\|1\|0.75\|0.6\|5\|253\|146
chr2_1	exon	24116223	24116326	24116223	ID=Msa0202110-mRNA-1:exon:9315;Parent=Msa0202110-mRNA-1
chr2_1	exon	24116468	24116627	24116468	ID=Msa0202110-mRNA-1:exon:9316;Parent=Msa0202110-mRNA-1
chr2_1	exon	24118169	24118242	24118169	ID=Msa0202110-mRNA-1:exon:9317;Parent=Msa0202110-mRNA-1
chr2_1	exon	24118736	24118879	24118736	ID=Msa0202110-mRNA-1:exon:9318;Parent=Msa0202110-mRNA-1
chr2_1	exon	24118988	24119317	24118988	ID=Msa0202110-mRNA-1:exon:9319;Parent=Msa0202110-mRNA-1
chr2_1	five_prime_UTR	24116223	24116326	24116223	ID=Msa0202110-mRNA-1:five_prime_utr;Parent=Msa0202110-mRNA-1
chr2_1	five_prime_UTR	24116468	24116481	24116468	ID=Msa0202110-mRNA-1:five_prime_utr;Parent=Msa0202110-mRNA-1
chr2_1	CDS	24116482	24116627	24116482	ID=Msa0202110-mRNA-1:cds;Parent=Msa0202110-mRNA-1
chr2_1	CDS	24118169	24118242	24118169	ID=Msa0202110-mRNA-1:cds;Parent=Msa0202110-mRNA-1
chr2_1	CDS	24118736	24118879	24118736	ID=Msa0202110-mRNA-1:cds;Parent=Msa0202110-mRNA-1
chr2_1	CDS	24118988	24119064	24118988	ID=Msa0202110-mRNA-1:cds;Parent=Msa0202110-mRNA-1
chr2_1	three_prime_UTR	24119065	24119317	24119065	ID=Msa0202110-mRNA-1:three_prime_utr;Parent=Msa0202110-mRNA-1

Gene Sequence

>Msa0202110

ATGAAGGTAACAATGATGATGGTGATGATGGTTTTAGCAATTTCTGTTTATTTGGATTCAGCTTCAGCAGCTTCATCTGTTGGTGAGTTTGTTGACAAGACCATTAATAACAACAAGATCGCCATCTTTTCCAAGACATATTGTCCGTACTGTAGAAGAGCAAAAGCTGTTTTCAAAGAGTTGAACCAAGTGCCATATGTTGTGGAGCTTGATGAGAGAGGGGCCATTGTTGTTACAAAGATATTGAAAGACCTTTTCATTGCAGATGATGGTTCAAAGATTCAGGATATTTTGGTTAATATTGTCGGGAAGCGTACTGTGCCACAAGTTTTCATCAATGGAAAACACCTTGGAGGATCAGATGAAACTGTTGAAGCGTATGAGAGTGGACTTCTGGCTAAACTTCTAGGAATTGAGACCGTGGATCATGATGATCTTTGA

Protein sequence

>Msa0202110

MKVTMMMVMMVLAISVYLDSASAASSVGEFVDKTINNNKIAIFSKTYCPYCRRAKAVFKELNQVPYVVELDERGAIVVTKILKDLFIADDGSKIQDILVNIVGKRTVPQVFINGKHLGGSDETVEAYESGLLAKLLGIETVDHDDL*