AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1387570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1387570 MtrunA17_Chr3g0139491 99.120 341 3 0 1 341 1 341 0.0 687
Msa1387570 MtrunA17_Chr1g0147151 89.796 343 33 2 1 341 1 343 0.0 570
Msa1387570 MtrunA17_Chr1g0203091 29.290 338 177 7 44 330 42 368 7.07e-30 117
Msa1387570 MtrunA17_Chr6g0475601 30.928 291 167 12 54 323 249 526 1.53e-25 107
Msa1387570 MtrunA17_Chr1g0213851 35.644 202 104 8 154 335 47 242 6.09e-25 101
Msa1387570 MtrunA17_Chr7g0214221 35.176 199 107 9 154 331 342 539 1.28e-23 101
Msa1387570 MtrunA17_Chr7g0247841 30.741 270 151 12 55 301 244 500 4.42e-23 100
Msa1387570 MtrunA17_Chr8g0348831 30.370 270 152 10 55 301 247 503 4.47e-21 94.0
Msa1387570 MtrunA17_Chr1g0182751 94.444 36 2 0 208 243 1 36 6.10e-15 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1387570 AT2G03120.1 83.481 339 54 1 1 339 1 337 0.0 561
Msa1387570 AT4G33410.1 28.443 334 167 8 29 301 17 339 2.49e-26 108
Msa1387570 AT1G63690.1 35.882 170 91 6 150 301 334 503 1.41e-22 99.0
Msa1387570 AT1G63690.2 35.294 170 92 6 150 301 334 503 5.13e-22 97.4
Msa1387570 AT1G01650.3 32.105 190 110 6 151 321 194 383 7.67e-21 92.8
Msa1387570 AT1G01650.4 32.105 190 110 6 151 321 194 383 7.67e-21 92.8
Msa1387570 AT1G01650.2 32.105 190 110 6 151 321 194 383 7.67e-21 92.8
Msa1387570 AT1G01650.1 32.105 190 110 6 151 321 336 525 8.31e-21 93.6
Msa1387570 AT2G43070.3 29.181 281 164 9 74 331 326 594 3.87e-20 92.0
Msa1387570 AT2G43070.4 29.181 281 164 9 74 331 332 600 4.36e-20 91.7
Msa1387570 AT2G43070.1 29.181 281 164 9 74 331 267 535 4.85e-20 91.3
Msa1387570 AT2G43070.2 29.181 281 164 9 74 331 273 541 5.00e-20 91.3
Msa1387570 AT1G05820.4 32.161 199 113 8 154 332 197 393 1.16e-19 89.4
Msa1387570 AT1G05820.2 36.471 170 86 8 154 303 337 504 1.21e-19 90.1
Msa1387570 AT1G05820.1 32.161 199 113 8 154 332 337 533 1.53e-19 90.1

Find 94 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTTGATGCACCAATTA+AGG 0.169404 tig0020912:+79813 Msa1387570:CDS
CACGGAACGAATTGCTAATT+TGG 0.197276 tig0020912:+78054 Msa1387570:CDS
TATATTGTACCTGCGGTAAT+TGG 0.229404 tig0020912:+82270 Msa1387570:CDS
TGTTGTGATGAACTGGTTTC+AGG 0.231809 tig0020912:+82048 Msa1387570:CDS
TGACGAACCTGCAATTAATT+AGG 0.240212 tig0020912:-77903 None:intergenic
GCTATTTAAGTTTCTATCTA+AGG 0.241091 tig0020912:+78518 Msa1387570:CDS
ATTGCTAATTTGGCTTTATT+AGG 0.242512 tig0020912:+78064 Msa1387570:CDS
GTACAATACGTGCACGTAAA+TGG 0.250189 tig0020912:+83177 Msa1387570:three_prime_UTR
AAAATGCACTCTTGAAATAC+TGG 0.260070 tig0020912:-81994 None:intergenic
TGTCACATACATCGAAAATA+TGG 0.289325 tig0020912:-78769 None:intergenic
TGCTCCTTGACTGCCCAATC+AGG 0.297514 tig0020912:+83105 Msa1387570:three_prime_UTR
AGCTTAAGTATCCGAATTCT+AGG 0.299065 tig0020912:-82991 None:intergenic
GTTAAAACAACATTTAAGTT+TGG 0.310254 tig0020912:-78235 None:intergenic
TGAATCAGAAGCACCGATAT+TGG 0.321158 tig0020912:-82947 None:intergenic
GTTAGGAGTGAAGAGTGTTT+TGG 0.324843 tig0020912:+83229 Msa1387570:three_prime_UTR
AGATCATCATTCCAATGATT+TGG 0.337619 tig0020912:-78730 None:intergenic
AACGCTTTCTGCCAAATCAT+TGG 0.337952 tig0020912:+78719 Msa1387570:CDS
ACTGTTACTTTCCTAGAATT+CGG 0.347422 tig0020912:+82980 Msa1387570:three_prime_UTR
GGCAGAAAGCGTTTAATAGA+TGG 0.350547 tig0020912:-78709 None:intergenic
TTGGCTGGCAAATAACATAT+TGG 0.355338 tig0020912:+78986 Msa1387570:CDS
TTCCATGGCAAACTTTCTAA+TGG 0.361171 tig0020912:+83130 Msa1387570:three_prime_UTR
CCAAGTCCAAGCATTGAAAA+TGG 0.367027 tig0020912:-80013 None:intergenic
TGCTCTGCGCAAGCATTGGC+TGG 0.369363 tig0020912:+78971 Msa1387570:CDS
CTGGAATGGTGAAGTTAAAC+AGG 0.372693 tig0020912:+82314 Msa1387570:CDS
GATCGGAGAAAGATAGAATT+GGG 0.382094 tig0020912:-77863 None:intergenic
ATGCTTGCGCAGAGCATACC+AGG 0.396831 tig0020912:-78964 None:intergenic
GGGTCTTGCTTTCTGCATCC+AGG 0.398103 tig0020912:+79007 Msa1387570:CDS
TCTTTGACCTTTGACTCTTT+CGG 0.399809 tig0020912:+77804 Msa1387570:five_prime_UTR
TCTCTTGGCTCCTTCAAGAC+TGG 0.403236 tig0020912:+79625 Msa1387570:CDS
TTACAATTGTTGTGATGAAC+TGG 0.407335 tig0020912:+82041 Msa1387570:CDS
CAATATTGACATGGTTGGTT+AGG 0.409453 tig0020912:+83212 Msa1387570:three_prime_UTR
CGTTGGTGCAGTTGGTTTGA+CGG 0.413210 tig0020912:-78293 None:intergenic
AGATCGGAGAAAGATAGAAT+TGG 0.418376 tig0020912:-77864 None:intergenic
CAAGACTGGTGCCATTCTCT+TGG 0.418444 tig0020912:+79639 Msa1387570:CDS
TGATGCCAAGTCTAGCAAAA+AGG 0.420156 tig0020912:+82904 Msa1387570:CDS
GGAATTGAAATGCTTTCTCT+TGG 0.423273 tig0020912:+79610 Msa1387570:CDS
GGTATGCTCTGCGCAAGCAT+TGG 0.428819 tig0020912:+78967 Msa1387570:CDS
GTTTGCCACGTAAGCATAAA+CGG 0.437282 tig0020912:+77709 Msa1387570:five_prime_UTR
GTTCATCCTTCTCATCTCAT+TGG 0.437622 tig0020912:+77731 Msa1387570:five_prime_UTR
TGGCTGGCAAATAACATATT+GGG 0.442504 tig0020912:+78987 Msa1387570:CDS
AGTTAAAGCATGTCCAATAT+CGG 0.445369 tig0020912:+82934 Msa1387570:exon
GTGCAGTTGGTTTGACGGAT+CGG 0.468327 tig0020912:-78288 None:intergenic
GAGAATGGCACCAGTCTTGA+AGG 0.470820 tig0020912:-79635 None:intergenic
GCTCCTTGACTGCCCAATCA+GGG 0.476847 tig0020912:+83106 Msa1387570:three_prime_UTR
CCGTCGAGATTGAGTTTACA+AGG 0.477957 tig0020912:+78901 Msa1387570:CDS
TTCTCACCACTCCTCTCTCT+CGG 0.478834 tig0020912:+83155 Msa1387570:three_prime_UTR
CAGATCGTTGCTGCAGTCCC+TGG 0.479847 tig0020912:+78927 Msa1387570:CDS
TTTGCCATGGAAACCCTGAT+TGG 0.480401 tig0020912:-83119 None:intergenic
AGCATTGCACTTCCAACAAA+GGG 0.481693 tig0020912:-78480 None:intergenic
ACTCTCTTCTTGAGATGAAT+CGG 0.482413 tig0020912:-82882 None:intergenic
CTGCCCAATCAGGGTTTCCA+TGG 0.486913 tig0020912:+83115 Msa1387570:three_prime_UTR
TAACACAATATTGACATGGT+TGG 0.487369 tig0020912:+83207 Msa1387570:three_prime_UTR
TTGCCATGGAAACCCTGATT+GGG 0.495997 tig0020912:-83118 None:intergenic
ATGGATCTAGTGTGCGAGAT+TGG 0.499831 tig0020912:-78008 None:intergenic
ACAGGCTACTTCTTTGTACT+CGG 0.505091 tig0020912:+78561 Msa1387570:CDS
GCTTGCATCACTGTGTTTGT+CGG 0.510711 tig0020912:+78259 Msa1387570:CDS
GTGGAATAACTAGTTAAAGA+TGG 0.513910 tig0020912:-83268 None:intergenic
TTAGTGAACACTGTGTTGAC+AGG 0.514738 tig0020912:+78543 Msa1387570:CDS
GGAATGATGATCTCATAGTC+TGG 0.516052 tig0020912:+78740 Msa1387570:CDS
CTTCACCATTCCAGATGCAA+TGG 0.516632 tig0020912:-82305 None:intergenic
GTACTTACCGTTGGTGCAGT+TGG 0.522180 tig0020912:-78301 None:intergenic
AAAACGCATAGCATGTTCCT+TGG 0.531310 tig0020912:-78457 None:intergenic
CTTGGTGATATTGTTATCCC+AGG 0.535420 tig0020912:+80031 Msa1387570:CDS
TTTGACAACAAGCGGTGCTA+AGG 0.535421 tig0020912:-78206 None:intergenic
TTTGCAACGCTGACCATCAC+AGG 0.536507 tig0020912:-79790 None:intergenic
GAACTGGTTTCAGGCTGCAC+AGG 0.544980 tig0020912:+82057 Msa1387570:CDS
TTCACCATTCCAGATGCAAT+GGG 0.551965 tig0020912:-82304 None:intergenic
GGATCTACTTTGACAACAAG+CGG 0.559911 tig0020912:-78214 None:intergenic
GGCCTTGCAGAATCTGCTGT+GGG 0.560098 tig0020912:-79992 None:intergenic
AACCATTAGAAAGTTTGCCA+TGG 0.560755 tig0020912:-83132 None:intergenic
CGTCAAACCAACTGCACCAA+CGG 0.561582 tig0020912:+78294 Msa1387570:CDS
TAGCATTGCACTTCCAACAA+AGG 0.562776 tig0020912:-78481 None:intergenic
CTAATCACAGTCTGTTACAG+AGG 0.564128 tig0020912:-83032 None:intergenic
AAACCCTGATTGGGCAGTCA+AGG 0.565288 tig0020912:-83109 None:intergenic
CACGTATTGTACCGAGAGAG+AGG 0.565984 tig0020912:-83166 None:intergenic
TTTACTACCGAAAGAGTCAA+AGG 0.566706 tig0020912:-77811 None:intergenic
AGAAAAGAATTGCAGCAGAT+CGG 0.568020 tig0020912:-77880 None:intergenic
GCGGCCCATTGCATCTGGAA+TGG 0.576051 tig0020912:+82300 Msa1387570:CDS
AAATGCACTCTTGAAATACT+GGG 0.576806 tig0020912:-81993 None:intergenic
GGTACAATATACAAAAGAGC+AGG 0.585695 tig0020912:-82258 None:intergenic
TCCCCACAGCAGATTCTGCA+AGG 0.595992 tig0020912:+79990 Msa1387570:CDS
TTGCGGTTTGATGTGTCTAG+AGG 0.601003 tig0020912:+81962 Msa1387570:CDS
GAGTCAAAGGTCAAAGAGAA+CGG 0.602014 tig0020912:-77798 None:intergenic
TGGCCTTGCAGAATCTGCTG+TGG 0.613278 tig0020912:-79993 None:intergenic
ATCGGAGAAAGATAGAATTG+GGG 0.621997 tig0020912:-77862 None:intergenic
TGCATGCCAATGAGATGAGA+AGG 0.629161 tig0020912:-77737 None:intergenic
TATGCAGGAGACAATGTCCA+AGG 0.637852 tig0020912:+78440 Msa1387570:intron
CCTTGTAAACTCAATCTCGA+CGG 0.651095 tig0020912:-78901 None:intergenic
ATGAACCGTTTATGCTTACG+TGG 0.657297 tig0020912:-77714 None:intergenic
GACAAACACAGTGATGCAAG+CGG 0.680075 tig0020912:-78257 None:intergenic
TTGCTGCGAAATGAAGAACA+CGG 0.684413 tig0020912:+78036 Msa1387570:exon
TCGGAGAAAGATAGAATTGG+GGG 0.695601 tig0020912:-77861 None:intergenic
GCCTTGCAGAATCTGCTGTG+GGG 0.709703 tig0020912:-79991 None:intergenic
ATTGTACCGAGAGAGAGGAG+TGG 0.729764 tig0020912:-83161 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAATAAGTTAAAATTATT+TGG - tig0020912:80191-80210 None:intergenic 10.0%
!! AAGTTTAAAAACTTATAAAA+GGG - tig0020912:80535-80554 None:intergenic 10.0%
!!! AGTTAATATTTTTTTAGTTA+CGG - tig0020912:81619-81638 None:intergenic 10.0%
!!! TTTAAATTTTTTTTTTCGTT+TGG + tig0020912:82107-82126 Msa1387570:intron 10.0%
!!! TTAAATTTTTTTTTTCGTTT+GGG + tig0020912:82108-82127 Msa1387570:intron 10.0%
!! TGCAATATATAAAAGAATAA+GGG - tig0020912:78388-78407 None:intergenic 15.0%
!! TTGCAATATATAAAAGAATA+AGG - tig0020912:78389-78408 None:intergenic 15.0%
!! AATAGGTTATTATGTATAAT+TGG - tig0020912:79215-79234 None:intergenic 15.0%
!! TATACATAATAACCTATTAT+AGG + tig0020912:79217-79236 Msa1387570:intron 15.0%
!! TTAAATTATGGTATTTAACT+TGG + tig0020912:79240-79259 Msa1387570:intron 15.0%
!! CACAAAACATAATTAATTAT+TGG - tig0020912:79389-79408 None:intergenic 15.0%
!!! AATAAGCTTAATTTCTAAAA+AGG - tig0020912:79455-79474 None:intergenic 15.0%
!!! TTTTTATCAAATAGTTATCA+TGG - tig0020912:79918-79937 None:intergenic 15.0%
!!! TTTAGTTCTTAGTATAAATT+TGG + tig0020912:80115-80134 Msa1387570:intron 15.0%
!! ATACTAATTGAAAAAGAATA+AGG + tig0020912:80332-80351 Msa1387570:intron 15.0%
!! TACTAATTGAAAAAGAATAA+GGG + tig0020912:80333-80352 Msa1387570:intron 15.0%
!! GAAGTTTAAAAACTTATAAA+AGG - tig0020912:80536-80555 None:intergenic 15.0%
!! TATTCATTATGAAAAAAGTA+GGG - tig0020912:80905-80924 None:intergenic 15.0%
!! TTATTCATTATGAAAAAAGT+AGG - tig0020912:80906-80925 None:intergenic 15.0%
!! AAAAATAATAAATGTTGCAT+TGG - tig0020912:81330-81349 None:intergenic 15.0%
!! GAATGAAATTCATTAAATAA+GGG - tig0020912:81366-81385 None:intergenic 15.0%
!! TGAATGAAATTCATTAAATA+AGG - tig0020912:81367-81386 None:intergenic 15.0%
!!! ATTAATTATGTTGATTTCAA+TGG - tig0020912:81450-81469 None:intergenic 15.0%
!!! GTTAATATTTTTTTAGTTAC+GGG - tig0020912:81618-81637 None:intergenic 15.0%
!! GATAATTTATTGAAGATAAA+TGG - tig0020912:81867-81886 None:intergenic 15.0%
!! ATAAATTATCTACAATCAAT+TGG + tig0020912:81877-81896 Msa1387570:intron 15.0%
!!! TAAATTTTTTTTTTCGTTTG+GGG + tig0020912:82109-82128 Msa1387570:intron 15.0%
!!! ATGATTTTATAGTTTTAAGT+TGG + tig0020912:82743-82762 Msa1387570:intron 15.0%
!!! GTTAAAACAACATTTAAGTT+TGG - tig0020912:78238-78257 None:intergenic 20.0%
!!! AATTTTGTATTGAATTATGC+AGG + tig0020912:78425-78444 Msa1387570:intron 20.0%
!! ATATAAAACACGTCAAAAAA+AGG - tig0020912:78643-78662 None:intergenic 20.0%
!!! TTATGTTTTTTGCTACTTTT+AGG + tig0020912:78837-78856 Msa1387570:intron 20.0%
!! ACCTATTATAGGTTAAATTA+TGG + tig0020912:79228-79247 Msa1387570:intron 20.0%
!! ACCATAATTTAACCTATAAT+AGG - tig0020912:79232-79251 None:intergenic 20.0%
!!! TTATGTTTTGTGCATATTTT+TGG + tig0020912:79397-79416 Msa1387570:intron 20.0%
!!! TTTTTGTATATGACATTTTC+TGG + tig0020912:79755-79774 Msa1387570:CDS 20.0%
!!! TTTTGTATATGACATTTTCT+GGG + tig0020912:79756-79775 Msa1387570:CDS 20.0%
!! TTTAAATTCAACTTCACAAA+AGG - tig0020912:80088-80107 None:intergenic 20.0%
!! CAAATGTAAAGTTTCTTTAT+AGG + tig0020912:80436-80455 Msa1387570:intron 20.0%
!!! ATTTTAAGTCTTTGCTTAAA+TGG + tig0020912:80938-80957 Msa1387570:intron 20.0%
!!! TGTAAAGTGACAATTATTTT+GGG - tig0020912:81304-81323 None:intergenic 20.0%
!!! TTGTAAAGTGACAATTATTT+TGG - tig0020912:81305-81324 None:intergenic 20.0%
!!! ATTAAATAAGGGTATAGTAA+TGG - tig0020912:81355-81374 None:intergenic 20.0%
!!! AAATTTTTTTTTTCGTTTGG+GGG + tig0020912:82110-82129 Msa1387570:intron 20.0%
!! TACATATAGATTGTAGAATA+TGG + tig0020912:82594-82613 Msa1387570:intron 20.0%
!! ACATATAGATTGTAGAATAT+GGG + tig0020912:82595-82614 Msa1387570:intron 20.0%
!! AAATTGCCAATATGAAAAAT+AGG - tig0020912:83080-83099 None:intergenic 20.0%
!!! TTTTTAACACAATATTGACA+TGG + tig0020912:83203-83222 Msa1387570:three_prime_UTR 20.0%
!!! ATTGCTAATTTGGCTTTATT+AGG + tig0020912:78064-78083 Msa1387570:CDS 25.0%
!! GCTATTTAAGTTTCTATCTA+AGG + tig0020912:78518-78537 Msa1387570:CDS 25.0%
! TGTTTAATTCATTCATGCAT+TGG + tig0020912:78812-78831 Msa1387570:intron 25.0%
! ATGCTTATAGTTAAATTGAC+AGG + tig0020912:79083-79102 Msa1387570:intron 25.0%
! ATGTAACTGGCATAAATAAA+AGG - tig0020912:79178-79197 None:intergenic 25.0%
! TTATGCCAGTTACATAAATT+TGG + tig0020912:79183-79202 Msa1387570:intron 25.0%
! TTGTTCCAAATTTATGTAAC+TGG - tig0020912:79191-79210 None:intergenic 25.0%
! TGCTTGTATTGAAATTTGAA+AGG + tig0020912:79307-79326 Msa1387570:intron 25.0%
! GCTTGTATTGAAATTTGAAA+GGG + tig0020912:79308-79327 Msa1387570:intron 25.0%
! TAATAAAAGAAATGGTTGAC+AGG - tig0020912:79346-79365 None:intergenic 25.0%
! CCATGAGTTAATAAAAGAAA+TGG - tig0020912:79354-79373 None:intergenic 25.0%
!! CCATTTCTTTTATTAACTCA+TGG + tig0020912:79351-79370 Msa1387570:intron 25.0%
! AAAAAAACATACCAAGAGAA+TGG - tig0020912:79653-79672 None:intergenic 25.0%
!! TCCTTCTTTTAAATTGAACT+TGG + tig0020912:79675-79694 Msa1387570:intron 25.0%
! ACCAAGTTCAATTTAAAAGA+AGG - tig0020912:79679-79698 None:intergenic 25.0%
!! TTTACATTCACATATTTTGC+AGG + tig0020912:79726-79745 Msa1387570:intron 25.0%
!!! GCAAAGATTTTAACCTTAAT+TGG - tig0020912:79829-79848 None:intergenic 25.0%
!!! TTAAATTTTTCAAACTGTGC+TGG + tig0020912:80140-80159 Msa1387570:intron 25.0%
!!! TAAATTTTTCAAACTGTGCT+GGG + tig0020912:80141-80160 Msa1387570:intron 25.0%
! AATTGAAAAAGAATAAGGGA+AGG + tig0020912:80337-80356 Msa1387570:intron 25.0%
! ATTGAAAAAGAATAAGGGAA+GGG + tig0020912:80338-80357 Msa1387570:intron 25.0%
! ATCAATTAATCATCCAAACA+GGG - tig0020912:80396-80415 None:intergenic 25.0%
!!! AAAAAAATGAGGGTTCTAAA+AGG + tig0020912:80487-80506 Msa1387570:intron 25.0%
!!! AAAAAATGAGGGTTCTAAAA+GGG + tig0020912:80488-80507 Msa1387570:intron 25.0%
! AGAGAAAAAATCTCATTGTT+TGG - tig0020912:80565-80584 None:intergenic 25.0%
!!! AGCTTTAAAAGTTTGTTCTT+TGG - tig0020912:80626-80645 None:intergenic 25.0%
! TTTGATTCTCTAGATAATGT+GGG - tig0020912:80683-80702 None:intergenic 25.0%
! ATTTGATTCTCTAGATAATG+TGG - tig0020912:80684-80703 None:intergenic 25.0%
! GAAGAAATTGGTACTAATTT+AGG - tig0020912:80791-80810 None:intergenic 25.0%
! CAGTTATATTGGATTCTTAT+TGG + tig0020912:81205-81224 Msa1387570:intron 25.0%
! TCCACTAACTACAATTAATA+AGG + tig0020912:81397-81416 Msa1387570:intron 25.0%
! CCACTAACTACAATTAATAA+GGG + tig0020912:81398-81417 Msa1387570:intron 25.0%
! CTCTAAATTATAGTCGTTTA+AGG - tig0020912:81498-81517 None:intergenic 25.0%
! AAACGACTATAATTTAGAGA+CGG + tig0020912:81499-81518 Msa1387570:intron 25.0%
! TATGACATAAACACTAAAGA+GGG - tig0020912:81553-81572 None:intergenic 25.0%
! TTATGACATAAACACTAAAG+AGG - tig0020912:81554-81573 None:intergenic 25.0%
!!! ATTTTTTAGACGTAGATCAA+TGG - tig0020912:81790-81809 None:intergenic 25.0%
!!! TGACTGTATTTTTTCCAATT+AGG + tig0020912:81920-81939 Msa1387570:intron 25.0%
!!! TTTCCAATTAGGTATTTTTG+TGG + tig0020912:81931-81950 Msa1387570:intron 25.0%
!!! TATTTCAAGAGTGCATTTTT+AGG + tig0020912:81998-82017 Msa1387570:CDS 25.0%
!! TAACGTTTTTCCCTTTTTAT+TGG + tig0020912:82220-82239 Msa1387570:intron 25.0%
!!! ATCCATATTTTTTATGCATC+TGG + tig0020912:82385-82404 Msa1387570:intron 25.0%
! AACCAGATGCATAAAAAATA+TGG - tig0020912:82390-82409 None:intergenic 25.0%
! TTTACACTACTCATAATACT+TGG - tig0020912:82468-82487 None:intergenic 25.0%
!! TATAAACTGCAAATTAGCTT+TGG - tig0020912:82504-82523 None:intergenic 25.0%
!!! TTAAGTACATTTTAAAGCAC+TGG - tig0020912:82558-82577 None:intergenic 25.0%
!!! AGTGCTTTAAAATGTACTTA+AGG + tig0020912:82557-82576 Msa1387570:intron 25.0%
! TTTGGTTAAATACCTTCTAA+AGG + tig0020912:82619-82638 Msa1387570:intron 25.0%
!!! GTTAGTCCTATTTTTCATAT+TGG + tig0020912:83071-83090 Msa1387570:three_prime_UTR 25.0%
! CTTTTCTCCTAATTAATTGC+AGG + tig0020912:77896-77915 Msa1387570:five_prime_UTR 30.0%
ACAAAACAGCTTATGTACAT+GGG - tig0020912:78329-78348 None:intergenic 30.0%
AACAAAACAGCTTATGTACA+TGG - tig0020912:78330-78349 None:intergenic 30.0%
AGATCATCATTCCAATGATT+TGG - tig0020912:78733-78752 None:intergenic 30.0%
TGTCACATACATCGAAAATA+TGG - tig0020912:78772-78791 None:intergenic 30.0%
TGTGACACTGAGTATAATAT+AGG + tig0020912:78785-78804 Msa1387570:intron 30.0%
AAATTTGACAGCACTATTCA+AGG + tig0020912:79267-79286 Msa1387570:intron 30.0%
!!! ATTTTTGGTATTCACTTTCC+TGG + tig0020912:79412-79431 Msa1387570:intron 30.0%
AAGCTTATTCTGTAGAAAAC+AGG + tig0020912:79466-79485 Msa1387570:intron 30.0%
ATCATTTGATGCACCAATTA+AGG + tig0020912:79813-79832 Msa1387570:CDS 30.0%
! ACAGCATGACTTCAAATTTT+GGG + tig0020912:80234-80253 Msa1387570:intron 30.0%
!! AACCATTTCTAGCAAATTCA+TGG - tig0020912:80271-80290 None:intergenic 30.0%
GTAAAAATGCCTGTTATAAC+CGG + tig0020912:80292-80311 Msa1387570:intron 30.0%
CATCAATTAATCATCCAAAC+AGG - tig0020912:80397-80416 None:intergenic 30.0%
CTGTTTGGATGATTAATTGA+TGG + tig0020912:80395-80414 Msa1387570:intron 30.0%
TATAAAAGGGAAGAAACAGA+GGG - tig0020912:80522-80541 None:intergenic 30.0%
TTATAAAAGGGAAGAAACAG+AGG - tig0020912:80523-80542 None:intergenic 30.0%
AAATCTCATTGTTTGGACTT+TGG - tig0020912:80558-80577 None:intergenic 30.0%
ACTAACACAAACACAGATAT+TGG - tig0020912:80829-80848 None:intergenic 30.0%
AAGAGACAATTATTGTGAGA+CGG - tig0020912:81265-81284 None:intergenic 30.0%
CCCTTATTAATTGTAGTTAG+TGG - tig0020912:81401-81420 None:intergenic 30.0%
! TAAATACATGTTGTCGCTTA+CGG - tig0020912:81736-81755 None:intergenic 30.0%
AAAAATAGACCCATAACCAA+AGG + tig0020912:81804-81823 Msa1387570:intron 30.0%
AAAATAGACCCATAACCAAA+GGG + tig0020912:81805-81824 Msa1387570:intron 30.0%
! CTGTATTTGAGATCAAACTT+TGG + tig0020912:81830-81849 Msa1387570:intron 30.0%
ACAATCAATTGGTTGTTACT+TGG + tig0020912:81888-81907 Msa1387570:intron 30.0%
ATGCCACAAAAATACCTAAT+TGG - tig0020912:81937-81956 None:intergenic 30.0%
!! ATTAGGTATTTTTGTGGCAT+TGG + tig0020912:81937-81956 Msa1387570:intron 30.0%
AAATGCACTCTTGAAATACT+GGG - tig0020912:81996-82015 None:intergenic 30.0%
AAAATGCACTCTTGAAATAC+TGG - tig0020912:81997-82016 None:intergenic 30.0%
!!! GCATTTTTAGGATACACTTT+TGG + tig0020912:82010-82029 Msa1387570:CDS 30.0%
TTACAATTGTTGTGATGAAC+TGG + tig0020912:82041-82060 Msa1387570:CDS 30.0%
TACGATCAGTGAATTTGATT+TGG - tig0020912:82164-82183 None:intergenic 30.0%
! TCTTTTGTATATTGTACCTG+CGG + tig0020912:82263-82282 Msa1387570:CDS 30.0%
TTGACATTGATATGAGAACA+GGG - tig0020912:82366-82385 None:intergenic 30.0%
ATTGACATTGATATGAGAAC+AGG - tig0020912:82367-82386 None:intergenic 30.0%
GGAAAAATTATACTACACAC+CGG - tig0020912:82428-82447 None:intergenic 30.0%
TTGGAAATGTAACACAAAAC+AGG - tig0020912:82449-82468 None:intergenic 30.0%
ACAAATGTTGCTGAAGTTAT+TGG + tig0020912:82716-82735 Msa1387570:intron 30.0%
! AACATCATGTTTAGAGCTTA+AGG + tig0020912:82767-82786 Msa1387570:intron 30.0%
CTTTCTATTAATGCAGTTGT+TGG + tig0020912:82838-82857 Msa1387570:intron 30.0%
AGTTAAAGCATGTCCAATAT+CGG + tig0020912:82934-82953 Msa1387570:exon 30.0%
!! ACTGTTACTTTCCTAGAATT+CGG + tig0020912:82980-82999 Msa1387570:three_prime_UTR 30.0%
TAACACAATATTGACATGGT+TGG + tig0020912:83207-83226 Msa1387570:three_prime_UTR 30.0%
GTGGAATAACTAGTTAAAGA+TGG - tig0020912:83271-83290 None:intergenic 30.0%
TCTTTGACCTTTGACTCTTT+CGG + tig0020912:77804-77823 Msa1387570:five_prime_UTR 35.0%
TTTACTACCGAAAGAGTCAA+AGG - tig0020912:77814-77833 None:intergenic 35.0%
GGGGGAAAATGATTAAATCA+GGG - tig0020912:77846-77865 None:intergenic 35.0%
TGGGGGAAAATGATTAAATC+AGG - tig0020912:77847-77866 None:intergenic 35.0%
ATCGGAGAAAGATAGAATTG+GGG - tig0020912:77865-77884 None:intergenic 35.0%
GATCGGAGAAAGATAGAATT+GGG - tig0020912:77866-77885 None:intergenic 35.0%
AGATCGGAGAAAGATAGAAT+TGG - tig0020912:77867-77886 None:intergenic 35.0%
AGAAAAGAATTGCAGCAGAT+CGG - tig0020912:77883-77902 None:intergenic 35.0%
TGACGAACCTGCAATTAATT+AGG - tig0020912:77906-77925 None:intergenic 35.0%
! AGGTTCGTCAAATGTGTTTT+TGG + tig0020912:77916-77935 Msa1387570:intron 35.0%
AATCATTTCTGTGATTGCAG+CGG + tig0020912:77982-78001 Msa1387570:intron 35.0%
TCATTTCGCAGCAAAAATGA+TGG - tig0020912:78030-78049 None:intergenic 35.0%
TAAAAGAATAAGGGCCTGTT+CGG - tig0020912:78379-78398 None:intergenic 35.0%
!!! TTTTCTCTTCCACTTTTTGC+AGG + tig0020912:78674-78693 Msa1387570:intron 35.0%
!!! TTTCTCTTCCACTTTTTGCA+GGG + tig0020912:78675-78694 Msa1387570:intron 35.0%
TTGGCTGGCAAATAACATAT+TGG + tig0020912:78986-79005 Msa1387570:CDS 35.0%
TGGCTGGCAAATAACATATT+GGG + tig0020912:78987-79006 Msa1387570:CDS 35.0%
! TATAGGTAAAGCATCAAACC+TGG - tig0020912:79028-79047 None:intergenic 35.0%
! TTCACTTTCCTGGTTTGAAA+TGG + tig0020912:79422-79441 Msa1387570:intron 35.0%
GTATTGTTCCATTTCAAACC+AGG - tig0020912:79433-79452 None:intergenic 35.0%
! GGAGTTACTGGTGTTAATTA+CGG - tig0020912:79573-79592 None:intergenic 35.0%
GGAATTGAAATGCTTTCTCT+TGG + tig0020912:79610-79629 Msa1387570:CDS 35.0%
AAAATCTTTGCTGAGTGCAA+TGG + tig0020912:79838-79857 Msa1387570:intron 35.0%
TCAACAGAGTAATCTTACCT+GGG - tig0020912:80051-80070 None:intergenic 35.0%
ATCAACAGAGTAATCTTACC+TGG - tig0020912:80052-80071 None:intergenic 35.0%
! CACAGCATGACTTCAAATTT+TGG + tig0020912:80233-80252 Msa1387570:intron 35.0%
!! TGCCATGAATTTGCTAGAAA+TGG + tig0020912:80266-80285 Msa1387570:intron 35.0%
TTAGTATTACAGTTCCCCAT+AGG - tig0020912:80319-80338 None:intergenic 35.0%
AAAAAGAATAAGGGAAGGGA+TGG + tig0020912:80342-80361 Msa1387570:intron 35.0%
GATTAATTGATGGAGCAAAG+TGG + tig0020912:80405-80424 Msa1387570:intron 35.0%
TTCTACAACCTGCAATTTGA+AGG + tig0020912:80459-80478 Msa1387570:intron 35.0%
TCTACAACCTGCAATTTGAA+GGG + tig0020912:80460-80479 Msa1387570:intron 35.0%
TGAAGGGGAACAAAAAAATG+AGG + tig0020912:80476-80495 Msa1387570:intron 35.0%
GAAGGGGAACAAAAAAATGA+GGG + tig0020912:80477-80496 Msa1387570:intron 35.0%
!! TTCTTTGGATTAGCAGCATT+GGG - tig0020912:80611-80630 None:intergenic 35.0%
GCAACAAACTATATCATCAC+AGG - tig0020912:80661-80680 None:intergenic 35.0%
TGAATGTAACTACCATGTGT+CGG - tig0020912:80754-80773 None:intergenic 35.0%
ACAAACACAGATATTGGACA+CGG - tig0020912:80823-80842 None:intergenic 35.0%
GTTAGTGCTTCATAGTTCAA+AGG + tig0020912:80843-80862 Msa1387570:intron 35.0%
AATGGTCAAACTGTGATGTT+CGG + tig0020912:80956-80975 Msa1387570:intron 35.0%
CTAGTAAATGCACTGTGTTA+TGG + tig0020912:81057-81076 Msa1387570:intron 35.0%
ATTCAGGACATGAACATTTG+AGG + tig0020912:81156-81175 Msa1387570:intron 35.0%
AAACGGTCGTACAGTTATAT+TGG + tig0020912:81194-81213 Msa1387570:intron 35.0%
AGGTTTGTGCGCAATTATTA+AGG - tig0020912:81478-81497 None:intergenic 35.0%
GACTATAATTTAGAGACGGA+GGG + tig0020912:81503-81522 Msa1387570:intron 35.0%
!! TTTAGGATACACTTTTGGCT+TGG + tig0020912:82015-82034 Msa1387570:CDS 35.0%
GGGAAAAACGTTAATAGAGA+AGG - tig0020912:82213-82232 None:intergenic 35.0%
AAGAGGGACACCAATAAAAA+GGG - tig0020912:82233-82252 None:intergenic 35.0%
GGTACAATATACAAAAGAGC+AGG - tig0020912:82261-82280 None:intergenic 35.0%
TATATTGTACCTGCGGTAAT+TGG + tig0020912:82270-82289 Msa1387570:CDS 35.0%
! GGTTTGATTTCAAGCATTAC+CGG + tig0020912:82406-82425 Msa1387570:intron 35.0%
CAGTTTATACTGTATGTGTG+TGG + tig0020912:82515-82534 Msa1387570:intron 35.0%
AGATTGTAGAATATGGGCTT+TGG + tig0020912:82601-82620 Msa1387570:intron 35.0%
!!! GACTTGTGACCAGTTTTAAA+AGG + tig0020912:82658-82677 Msa1387570:intron 35.0%
CTGCAACAAAAGATATTGTG+CGG - tig0020912:82686-82705 None:intergenic 35.0%
! ATCATGTTTAGAGCTTAAGG+TGG + tig0020912:82770-82789 Msa1387570:intron 35.0%
ACTCTCTTCTTGAGATGAAT+CGG - tig0020912:82885-82904 None:intergenic 35.0%
! TTCATCCTTTTTGCTAGACT+TGG - tig0020912:82912-82931 None:intergenic 35.0%
AGCTTAAGTATCCGAATTCT+AGG - tig0020912:82994-83013 None:intergenic 35.0%
TTCCATGGCAAACTTTCTAA+TGG + tig0020912:83130-83149 Msa1387570:three_prime_UTR 35.0%
AACCATTAGAAAGTTTGCCA+TGG - tig0020912:83135-83154 None:intergenic 35.0%
! CAATATTGACATGGTTGGTT+AGG + tig0020912:83212-83231 Msa1387570:three_prime_UTR 35.0%
GTTTGCCACGTAAGCATAAA+CGG + tig0020912:77709-77728 Msa1387570:five_prime_UTR 40.0%
ATGAACCGTTTATGCTTACG+TGG - tig0020912:77717-77736 None:intergenic 40.0%
GTTCATCCTTCTCATCTCAT+TGG + tig0020912:77731-77750 Msa1387570:five_prime_UTR 40.0%
GAGTCAAAGGTCAAAGAGAA+CGG - tig0020912:77801-77820 None:intergenic 40.0%
TCGGAGAAAGATAGAATTGG+GGG - tig0020912:77864-77883 None:intergenic 40.0%
TTGCTGCGAAATGAAGAACA+CGG + tig0020912:78036-78055 Msa1387570:exon 40.0%
CACGGAACGAATTGCTAATT+TGG + tig0020912:78054-78073 Msa1387570:CDS 40.0%
!! TCATTTTTGTATGTTGCCGC+AGG + tig0020912:78178-78197 Msa1387570:intron 40.0%
GGATCTACTTTGACAACAAG+CGG - tig0020912:78217-78236 None:intergenic 40.0%
TCAAATTAGCCAATCCGAAC+AGG + tig0020912:78362-78381 Msa1387570:intron 40.0%
AAAACGCATAGCATGTTCCT+TGG - tig0020912:78460-78479 None:intergenic 40.0%
AGCATTGCACTTCCAACAAA+GGG - tig0020912:78483-78502 None:intergenic 40.0%
TAGCATTGCACTTCCAACAA+AGG - tig0020912:78484-78503 None:intergenic 40.0%
! TTAGTGAACACTGTGTTGAC+AGG + tig0020912:78543-78562 Msa1387570:CDS 40.0%
ACAGGCTACTTCTTTGTACT+CGG + tig0020912:78561-78580 Msa1387570:CDS 40.0%
TAATGTTGCCCTGCAAAAAG+TGG - tig0020912:78686-78705 None:intergenic 40.0%
!! GGCAGAAAGCGTTTAATAGA+TGG - tig0020912:78712-78731 None:intergenic 40.0%
AACGCTTTCTGCCAAATCAT+TGG + tig0020912:78719-78738 Msa1387570:CDS 40.0%
GGAATGATGATCTCATAGTC+TGG + tig0020912:78740-78759 Msa1387570:CDS 40.0%
GGCTGTGTAAAATAGGTGTA+AGG - tig0020912:78883-78902 None:intergenic 40.0%
CCTTGTAAACTCAATCTCGA+CGG - tig0020912:78904-78923 None:intergenic 40.0%
!! AGGCACAAAAAAAAGTGCCA+GGG - tig0020912:78947-78966 None:intergenic 40.0%
TCGCAGACAGACATGAATAT+AGG - tig0020912:79045-79064 None:intergenic 40.0%
CAGGTTCGTAACCATTTAGA+TGG + tig0020912:79102-79121 Msa1387570:intron 40.0%
TAATCGCGTTGCCATCTAAA+TGG - tig0020912:79116-79135 None:intergenic 40.0%
CAGCACTATTCAAGGTTTAG+CGG + tig0020912:79275-79294 Msa1387570:intron 40.0%
ATTCAAGGTTTAGCGGTGAT+AGG + tig0020912:79282-79301 Msa1387570:intron 40.0%
AACGTTACAGATGGAGTTAC+TGG - tig0020912:79585-79604 None:intergenic 40.0%
ACTCCATCTGTAACGTTTAC+AGG + tig0020912:79588-79607 Msa1387570:intron 40.0%
CTCCATCTGTAACGTTTACA+GGG + tig0020912:79589-79608 Msa1387570:intron 40.0%
TTCCCTGTAAACGTTACAGA+TGG - tig0020912:79594-79613 None:intergenic 40.0%
! CATTCACATATTTTGCAGGC+TGG + tig0020912:79730-79749 Msa1387570:intron 40.0%
!! CCAAGTCCAAGCATTGAAAA+TGG - tig0020912:80016-80035 None:intergenic 40.0%
! CCATTTTCAATGCTTGGACT+TGG + tig0020912:80013-80032 Msa1387570:CDS 40.0%
! CTTGGTGATATTGTTATCCC+AGG + tig0020912:80031-80050 Msa1387570:CDS 40.0%
TAGATGGAGACAATGGAGAA+GGG + tig0020912:80164-80183 Msa1387570:intron 40.0%
AATTGATGGAGCAAAGTGGA+AGG + tig0020912:80409-80428 Msa1387570:intron 40.0%
ATTGATGGAGCAAAGTGGAA+GGG + tig0020912:80410-80429 Msa1387570:intron 40.0%
CTACAACCTGCAATTTGAAG+GGG + tig0020912:80461-80480 Msa1387570:intron 40.0%
TTTGTTCCCCTTCAAATTGC+AGG - tig0020912:80470-80489 None:intergenic 40.0%
!! ATGAGGGTTCTAAAAGGGAA+TGG + tig0020912:80493-80512 Msa1387570:intron 40.0%
!! TCTTTGGATTAGCAGCATTG+GGG - tig0020912:80610-80629 None:intergenic 40.0%
!! GTTCTTTGGATTAGCAGCAT+TGG - tig0020912:80612-80631 None:intergenic 40.0%
!! CGGCGTTGATTTGAAGAAAT+TGG - tig0020912:80803-80822 None:intergenic 40.0%
TTAGTGAAGAGACGTTGTTC+TGG + tig0020912:80879-80898 Msa1387570:intron 40.0%
!! ACACTCTGAAATGTTGCACA+CGG + tig0020912:81009-81028 Msa1387570:intron 40.0%
AGTGCATTTACTAGATCCAG+CGG - tig0020912:81051-81070 None:intergenic 40.0%
TAAATGCACTGTGTTATGGC+TGG + tig0020912:81061-81080 Msa1387570:intron 40.0%
GACAATTATTGTGAGACGGA+GGG - tig0020912:81261-81280 None:intergenic 40.0%
AGACAATTATTGTGAGACGG+AGG - tig0020912:81262-81281 None:intergenic 40.0%
CGACTATAATTTAGAGACGG+AGG + tig0020912:81502-81521 Msa1387570:intron 40.0%
ATACAGTGCCCTTTGGTTAT+GGG - tig0020912:81816-81835 None:intergenic 40.0%
AATACAGTGCCCTTTGGTTA+TGG - tig0020912:81817-81836 None:intergenic 40.0%
ATCTCAAATACAGTGCCCTT+TGG - tig0020912:81823-81842 None:intergenic 40.0%
!!! TTTTTGTGGCATTGGCTTTG+CGG + tig0020912:81945-81964 Msa1387570:CDS 40.0%
! TGTTGTGATGAACTGGTTTC+AGG + tig0020912:82048-82067 Msa1387570:CDS 40.0%
CAAGAGGGACACCAATAAAA+AGG - tig0020912:82234-82253 None:intergenic 40.0%
! ACCTGCGGTAATTGGATTTT+TGG + tig0020912:82278-82297 Msa1387570:CDS 40.0%
!! TGCGGTAATTGGATTTTTGG+CGG + tig0020912:82281-82300 Msa1387570:CDS 40.0%
TTCACCATTCCAGATGCAAT+GGG - tig0020912:82307-82326 None:intergenic 40.0%
CTGGAATGGTGAAGTTAAAC+AGG + tig0020912:82314-82333 Msa1387570:CDS 40.0%
TGATATGAGAACAGGGCAAA+TGG - tig0020912:82359-82378 None:intergenic 40.0%
CAAGCAAAGTTGCCTTTAGA+AGG - tig0020912:82634-82653 None:intergenic 40.0%
!!! TGTGCGGAACCTTTTAAAAC+TGG - tig0020912:82670-82689 None:intergenic 40.0%
TGATGCCAAGTCTAGCAAAA+AGG + tig0020912:82904-82923 Msa1387570:CDS 40.0%
!! TGAATCAGAAGCACCGATAT+TGG - tig0020912:82950-82969 None:intergenic 40.0%
CTAATCACAGTCTGTTACAG+AGG - tig0020912:83035-83054 None:intergenic 40.0%
GTACAATACGTGCACGTAAA+TGG + tig0020912:83177-83196 Msa1387570:three_prime_UTR 40.0%
!!! GTTAGGAGTGAAGAGTGTTT+TGG + tig0020912:83229-83248 Msa1387570:three_prime_UTR 40.0%
TGCATGCCAATGAGATGAGA+AGG - tig0020912:77740-77759 None:intergenic 45.0%
ATGGATCTAGTGTGCGAGAT+TGG - tig0020912:78011-78030 None:intergenic 45.0%
! TTTGACAACAAGCGGTGCTA+AGG - tig0020912:78209-78228 None:intergenic 45.0%
GACAAACACAGTGATGCAAG+CGG - tig0020912:78260-78279 None:intergenic 45.0%
GCTTGCATCACTGTGTTTGT+CGG + tig0020912:78259-78278 Msa1387570:CDS 45.0%
!! ACATGGGAAGTACTTACCGT+TGG - tig0020912:78313-78332 None:intergenic 45.0%
TATGCAGGAGACAATGTCCA+AGG + tig0020912:78440-78459 Msa1387570:intron 45.0%
! GCTATGCGTTTTCCCTTTGT+TGG + tig0020912:78468-78487 Msa1387570:CDS 45.0%
TCTCGACGGCTGTGTAAAAT+AGG - tig0020912:78890-78909 None:intergenic 45.0%
CCGTCGAGATTGAGTTTACA+AGG + tig0020912:78901-78920 Msa1387570:CDS 45.0%
!! CAGGCACAAAAAAAAGTGCC+AGG - tig0020912:78948-78967 None:intergenic 45.0%
!!! CTGGCACTTTTTTTTGTGCC+TGG + tig0020912:78946-78965 Msa1387570:CDS 45.0%
! GGTTTTCTTCACTCCTGTGA+TGG + tig0020912:79777-79796 Msa1387570:CDS 45.0%
!! GCAAGGCCATTTTCAATGCT+TGG + tig0020912:80007-80026 Msa1387570:CDS 45.0%
TTCAAACTGTGCTGGGTAGA+TGG + tig0020912:80148-80167 Msa1387570:intron 45.0%
GTAGATGGAGACAATGGAGA+AGG + tig0020912:80163-80182 Msa1387570:intron 45.0%
CCTGTTATAACCGGTCCTAT+GGG + tig0020912:80301-80320 Msa1387570:intron 45.0%
CTGTTATAACCGGTCCTATG+GGG + tig0020912:80302-80321 Msa1387570:intron 45.0%
ATTACAGTTCCCCATAGGAC+CGG - tig0020912:80314-80333 None:intergenic 45.0%
GAATAAGGGAAGGGATGGAA+TGG + tig0020912:80347-80366 Msa1387570:intron 45.0%
TATCCCTTCTTCTCCCTGTT+TGG + tig0020912:80380-80399 Msa1387570:intron 45.0%
CATCCAAACAGGGAGAAGAA+GGG - tig0020912:80386-80405 None:intergenic 45.0%
TCATCCAAACAGGGAGAAGA+AGG - tig0020912:80387-80406 None:intergenic 45.0%
!! CTTTGGATTAGCAGCATTGG+GGG - tig0020912:80609-80628 None:intergenic 45.0%
! CATGTGTCGGTGTTTGACAT+TGG - tig0020912:80741-80760 None:intergenic 45.0%
CAATGTCAAACACCGACACA+TGG + tig0020912:80739-80758 Msa1387570:intron 45.0%
TTACACACGTGCGCTTATTC+AGG + tig0020912:81140-81159 Msa1387570:intron 45.0%
TTGCGGTTTGATGTGTCTAG+AGG + tig0020912:81962-81981 Msa1387570:CDS 45.0%
TGTGAGGATTGTGGTCATTG+TGG + tig0020912:82138-82157 Msa1387570:intron 45.0%
AAAAGAGCAGGCTGACAAGA+GGG - tig0020912:82249-82268 None:intergenic 45.0%
GCCAAAAATCCAATTACCGC+AGG - tig0020912:82282-82301 None:intergenic 45.0%
CTTCACCATTCCAGATGCAA+TGG - tig0020912:82308-82327 None:intergenic 45.0%
AGCTTAAGGTGGTCGAAATG+CGG + tig0020912:82781-82800 Msa1387570:intron 45.0%
TTGCCATGGAAACCCTGATT+GGG - tig0020912:83121-83140 None:intergenic 45.0%
TTTGCCATGGAAACCCTGAT+TGG - tig0020912:83122-83141 None:intergenic 45.0%
!! ATAATAATAATAATAATAGA+AGG - tig0020912:77956-77975 None:intergenic 5.0%
CATTTCTGTGATTGCAGCGG+AGG + tig0020912:77985-78004 Msa1387570:intron 50.0%
! CGGTGCTAAGGTTAAACCTG+CGG - tig0020912:78197-78216 None:intergenic 50.0%
!! GTGCAGTTGGTTTGACGGAT+CGG - tig0020912:78291-78310 None:intergenic 50.0%
!! CGTTGGTGCAGTTGGTTTGA+CGG - tig0020912:78296-78315 None:intergenic 50.0%
CGTCAAACCAACTGCACCAA+CGG + tig0020912:78294-78313 Msa1387570:CDS 50.0%
GTACTTACCGTTGGTGCAGT+TGG - tig0020912:78304-78323 None:intergenic 50.0%
GAATAAGGGCCTGTTCGGAT+TGG - tig0020912:78374-78393 None:intergenic 50.0%
TCTCTTGGCTCCTTCAAGAC+TGG + tig0020912:79625-79644 Msa1387570:CDS 50.0%
GAGAATGGCACCAGTCTTGA+AGG - tig0020912:79638-79657 None:intergenic 50.0%
!! CAAGACTGGTGCCATTCTCT+TGG + tig0020912:79639-79658 Msa1387570:CDS 50.0%
TTTGCAACGCTGACCATCAC+AGG - tig0020912:79793-79812 None:intergenic 50.0%
TGCTGGGTAGATGGAGACAA+TGG + tig0020912:80157-80176 Msa1387570:intron 50.0%
GAAGTCATGCTGTGACAGCA+AGG - tig0020912:80227-80246 None:intergenic 50.0%
GCCTGTTATAACCGGTCCTA+TGG + tig0020912:80300-80319 Msa1387570:intron 50.0%
CCCATAGGACCGGTTATAAC+AGG - tig0020912:80304-80323 None:intergenic 50.0%
AGGGAAGGGATGGAATGGAA+AGG + tig0020912:80352-80371 Msa1387570:intron 50.0%
ACTGTGATGTTCGGTTGTCG+AGG + tig0020912:80965-80984 Msa1387570:intron 50.0%
GGCTAGAGCATGCACTCAAA+CGG + tig0020912:81177-81196 Msa1387570:intron 50.0%
TCGTTTGGGGGAATGTTGTG+AGG + tig0020912:82122-82141 Msa1387570:intron 50.0%
GGGGAATGTTGTGAGGATTG+TGG + tig0020912:82129-82148 Msa1387570:intron 50.0%
CAAAAGAGCAGGCTGACAAG+AGG - tig0020912:82250-82269 None:intergenic 50.0%
CGAAATGCGGTATGCTTGCT+AGG + tig0020912:82794-82813 Msa1387570:intron 50.0%
AAACCCTGATTGGGCAGTCA+AGG - tig0020912:83112-83131 None:intergenic 50.0%
TTCTCACCACTCCTCTCTCT+CGG + tig0020912:83155-83174 Msa1387570:three_prime_UTR 50.0%
ATTGTACCGAGAGAGAGGAG+TGG - tig0020912:83164-83183 None:intergenic 50.0%
CACGTATTGTACCGAGAGAG+AGG - tig0020912:83169-83188 None:intergenic 50.0%
ATGCTTGCGCAGAGCATACC+AGG - tig0020912:78967-78986 None:intergenic 55.0%
GGTATGCTCTGCGCAAGCAT+TGG + tig0020912:78967-78986 Msa1387570:CDS 55.0%
GGGTCTTGCTTTCTGCATCC+AGG + tig0020912:79007-79026 Msa1387570:CDS 55.0%
TCCCCACAGCAGATTCTGCA+AGG + tig0020912:79990-80009 Msa1387570:CDS 55.0%
GCCTTGCAGAATCTGCTGTG+GGG - tig0020912:79994-80013 None:intergenic 55.0%
GGCCTTGCAGAATCTGCTGT+GGG - tig0020912:79995-80014 None:intergenic 55.0%
! TGGCCTTGCAGAATCTGCTG+TGG - tig0020912:79996-80015 None:intergenic 55.0%
GCACTGTGTTATGGCTGGAG+AGG + tig0020912:81066-81085 Msa1387570:intron 55.0%
! GAACTGGTTTCAGGCTGCAC+AGG + tig0020912:82057-82076 Msa1387570:CDS 55.0%
GGCTGCACAGGTGATTCATG+TGG + tig0020912:82069-82088 Msa1387570:intron 55.0%
TGATCGTACACGAGTCGCTG+AGG + tig0020912:82176-82195 Msa1387570:intron 55.0%
! TTTTGGCGGCCCATTGCATC+TGG + tig0020912:82295-82314 Msa1387570:CDS 55.0%
! TGCGGTATGCTTGCTAGGTG+TGG + tig0020912:82799-82818 Msa1387570:intron 55.0%
TGCTCCTTGACTGCCCAATC+AGG + tig0020912:83105-83124 Msa1387570:three_prime_UTR 55.0%
GCTCCTTGACTGCCCAATCA+GGG + tig0020912:83106-83125 Msa1387570:three_prime_UTR 55.0%
CTGCCCAATCAGGGTTTCCA+TGG + tig0020912:83115-83134 Msa1387570:three_prime_UTR 55.0%
CAGATCGTTGCTGCAGTCCC+TGG + tig0020912:78927-78946 Msa1387570:CDS 60.0%
!! TGCTCTGCGCAAGCATTGGC+TGG + tig0020912:78971-78990 Msa1387570:CDS 60.0%
TAGATCCAGCGGCTCTGCTG+CGG - tig0020912:81040-81059 None:intergenic 60.0%
CGTACACGAGTCGCTGAGGT+TGG + tig0020912:82180-82199 Msa1387570:intron 60.0%
GCGGCCCATTGCATCTGGAA+TGG + tig0020912:82300-82319 Msa1387570:CDS 60.0%
TGCAGCCGCAGCAGAGCCGC+TGG + tig0020912:81032-81051 Msa1387570:intron 75.0%
Chromosome Type Strat End Strand Name
tig0020912 gene 77706 83291 77706 ID=Msa1387570;Name=Msa1387570
tig0020912 mRNA 77706 83291 77706 ID=Msa1387570-mRNA-1;Parent=Msa1387570;Name=Msa1387570-mRNA-1;_AED=0.10;_eAED=0.10;_QI=256|1|1|1|0.90|0.83|12|357|341
tig0020912 exon 77706 77917 77706 ID=Msa1387570-mRNA-1:exon:10655;Parent=Msa1387570-mRNA-1
tig0020912 exon 78002 78085 78002 ID=Msa1387570-mRNA-1:exon:10656;Parent=Msa1387570-mRNA-1
tig0020912 exon 78200 78315 78200 ID=Msa1387570-mRNA-1:exon:10657;Parent=Msa1387570-mRNA-1
tig0020912 exon 78447 78598 78447 ID=Msa1387570-mRNA-1:exon:10658;Parent=Msa1387570-mRNA-1
tig0020912 exon 78696 78781 78696 ID=Msa1387570-mRNA-1:exon:10659;Parent=Msa1387570-mRNA-1
tig0020912 exon 78901 79028 78901 ID=Msa1387570-mRNA-1:exon:10660;Parent=Msa1387570-mRNA-1
tig0020912 exon 79610 79660 79610 ID=Msa1387570-mRNA-1:exon:10661;Parent=Msa1387570-mRNA-1
tig0020912 exon 79748 79834 79748 ID=Msa1387570-mRNA-1:exon:10662;Parent=Msa1387570-mRNA-1
tig0020912 exon 79983 80052 79983 ID=Msa1387570-mRNA-1:exon:10663;Parent=Msa1387570-mRNA-1
tig0020912 exon 81942 82078 81942 ID=Msa1387570-mRNA-1:exon:10664;Parent=Msa1387570-mRNA-1
tig0020912 exon 82258 82335 82258 ID=Msa1387570-mRNA-1:exon:10665;Parent=Msa1387570-mRNA-1
tig0020912 exon 82854 83291 82854 ID=Msa1387570-mRNA-1:exon:10666;Parent=Msa1387570-mRNA-1
tig0020912 five_prime_UTR 77706 77917 77706 ID=Msa1387570-mRNA-1:five_prime_utr;Parent=Msa1387570-mRNA-1
tig0020912 five_prime_UTR 78002 78045 78002 ID=Msa1387570-mRNA-1:five_prime_utr;Parent=Msa1387570-mRNA-1
tig0020912 CDS 78046 78085 78046 ID=Msa1387570-mRNA-1:cds;Parent=Msa1387570-mRNA-1
tig0020912 CDS 78200 78315 78200 ID=Msa1387570-mRNA-1:cds;Parent=Msa1387570-mRNA-1
tig0020912 CDS 78447 78598 78447 ID=Msa1387570-mRNA-1:cds;Parent=Msa1387570-mRNA-1
tig0020912 CDS 78696 78781 78696 ID=Msa1387570-mRNA-1:cds;Parent=Msa1387570-mRNA-1
tig0020912 CDS 78901 79028 78901 ID=Msa1387570-mRNA-1:cds;Parent=Msa1387570-mRNA-1
tig0020912 CDS 79610 79660 79610 ID=Msa1387570-mRNA-1:cds;Parent=Msa1387570-mRNA-1
tig0020912 CDS 79748 79834 79748 ID=Msa1387570-mRNA-1:cds;Parent=Msa1387570-mRNA-1
tig0020912 CDS 79983 80052 79983 ID=Msa1387570-mRNA-1:cds;Parent=Msa1387570-mRNA-1
tig0020912 CDS 81942 82078 81942 ID=Msa1387570-mRNA-1:cds;Parent=Msa1387570-mRNA-1
tig0020912 CDS 82258 82335 82258 ID=Msa1387570-mRNA-1:cds;Parent=Msa1387570-mRNA-1
tig0020912 CDS 82854 82934 82854 ID=Msa1387570-mRNA-1:cds;Parent=Msa1387570-mRNA-1
tig0020912 three_prime_UTR 82935 83291 82935 ID=Msa1387570-mRNA-1:three_prime_utr;Parent=Msa1387570-mRNA-1
Gene Sequence

>Msa1387570

ATGAAGAACACGGAACGAATTGCTAATTTGGCTTTATTAGGTTTAACCTTAGCACCGCTTGTTGTCAAAGTAGATCCAAACTTAAATGTTGTTTTAACCGCTTGCATCACTGTGTTTGTCGGATGTTACCGATCCGTCAAACCAACTGCACCAACGGAGACAATGTCCAAGGAACATGCTATGCGTTTTCCCTTTGTTGGAAGTGCAATGCTATTATCACTTTTCTTGCTATTTAAGTTTCTATCTAAGGACTTAGTGAACACTGTGTTGACAGGCTACTTCTTTGTACTCGGCATTGTTGCACTTTCGGCAACATTATTGCCATCTATTAAACGCTTTCTGCCAAATCATTGGAATGATGATCTCATAGTCTGGCGTTTTCCATATTTTCGATCCGTCGAGATTGAGTTTACAAGGTCACAGATCGTTGCTGCAGTCCCTGGCACTTTTTTTTGTGCCTGGTATGCTCTGCGCAAGCATTGGCTGGCAAATAACATATTGGGTCTTGCTTTCTGCATCCAGGGAATTGAAATGCTTTCTCTTGGCTCCTTCAAGACTGGTGCCATTCTCTTGGCTGGTCTTTTTGTATATGACATTTTCTGGGTTTTCTTCACTCCTGTGATGGTCAGCGTTGCAAAATCATTTGATGCACCAATTAAGCTTTTGTTCCCCACAGCAGATTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGATATTGTTATCCCAGGTATTTTTGTGGCATTGGCTTTGCGGTTTGATGTGTCTAGAGGAAGACAGACCCAGTATTTCAAGAGTGCATTTTTAGGATACACTTTTGGCTTGGTTCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGCCTGCTCTTTTGTATATTGTACCTGCGGTAATTGGATTTTTGGCGGCCCATTGCATCTGGAATGGTGAAGTTAAACAGTTGTTGGAGTTCGACGAGTCAAAGACTGCCGATTCATCTCAAGAAGAGAGTGATGCCAAGTCTAGCAAAAAGGATGAATAA

Protein sequence

>Msa1387570

MKNTERIANLALLGLTLAPLVVKVDPNLNVVLTACITVFVGCYRSVKPTAPTETMSKEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPSIKRFLPNHWNDDLIVWRFPYFRSVEIEFTRSQIVAAVPGTFFCAWYALRKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDIVIPGIFVALALRFDVSRGRQTQYFKSAFLGYTFGLVLTIVVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESKTADSSQEESDAKSSKKDE*