AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0606820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606820 MtrunA17_Chr4g0037521 90.177 509 50 0 13 521 1 509 0.0 960
Msa0606820 MtrunA17_Chr8g0377681 60.887 496 178 8 37 526 28 513 0.0 577
Msa0606820 MtrunA17_Chr8g0377701 59.921 504 187 8 21 519 16 509 0.0 576
Msa0606820 MtrunA17_Chr8g0377691 59.091 506 192 8 19 519 13 508 0.0 575
Msa0606820 MtrunA17_Chr8g0377651 59.761 502 187 8 23 519 17 508 0.0 573
Msa0606820 MtrunA17_Chr8g0377641 58.250 503 194 9 24 520 15 507 0.0 567
Msa0606820 MtrunA17_Chr4g0037491 89.542 306 32 0 210 515 1 306 0.0 565
Msa0606820 MtrunA17_Chr4g0037501 83.158 95 15 1 108 201 1 95 4.33e-50 167
Msa0606820 MtrunA17_Chr8g0385461 33.755 237 147 4 46 281 162 389 1.25e-29 123
Msa0606820 MtrunA17_Chr3g0097801 28.486 502 322 15 45 520 41 531 9.91e-28 116
Msa0606820 MtrunA17_Chr2g0279961 24.138 493 337 12 47 523 130 601 2.34e-25 110
Msa0606820 MtrunA17_Chr8g0377661 65.278 72 24 1 448 519 1 71 5.83e-23 92.8
Msa0606820 MtrunA17_Chr3g0130801 27.455 499 308 18 46 522 200 666 3.63e-19 91.3
Msa0606820 MtrunA17_Chr8g0384851 25.451 499 319 14 46 522 136 603 4.13e-18 87.8
Msa0606820 MtrunA17_Chr1g0191741 35.606 132 75 3 144 271 63 188 1.14e-13 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606820 AT4G34880.2 57.831 498 197 3 24 519 22 508 0.0 553
Msa0606820 AT4G34880.1 51.205 498 184 4 24 519 22 462 2.61e-171 492
Msa0606820 AT5G07360.1 32.377 244 155 4 46 288 204 438 7.33e-26 112
Msa0606820 AT5G07360.3 32.377 244 155 4 46 288 204 438 7.33e-26 112
Msa0606820 AT3G25660.1 26.471 544 324 17 21 520 21 532 7.39e-26 111
Msa0606820 AT5G64440.1 26.498 434 275 12 107 523 195 601 8.60e-24 105
Msa0606820 AT5G07360.2 31.967 244 149 5 46 288 204 431 1.84e-22 101
Msa0606820 AT1G08980.1 38.333 120 67 2 144 262 64 177 6.18e-13 71.2

Find 136 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATAAATACATACTAAAAT+AGG 0.142863 4_2:-53460737 None:intergenic
CACATGTGGTTTCGAAATTA+AGG 0.182180 4_2:+53459304 Msa0606820:CDS
GGCAACAGTGGTGGATAATT+TGG 0.246919 4_2:+53460556 Msa0606820:CDS
GGAAGCCGGTGCCATTATTC+TGG 0.250921 4_2:+53459326 Msa0606820:CDS
CTTTATTTGTTGAAACTAAC+TGG 0.253674 4_2:-53458885 None:intergenic
TGCTTCTTGTATGTCTTCTA+TGG 0.260952 4_2:-53459010 None:intergenic
AGTGACATTGGATCCTTTAT+AGG 0.290749 4_2:-53460317 None:intergenic
AGAAAATTTAAGCACCGTTC+TGG 0.305636 4_2:+53460583 Msa0606820:CDS
CCTCTGGCGCACCAAGCTTC+TGG 0.314745 4_2:-53459396 None:intergenic
TTTGTAGCTTCATAATCTCT+TGG 0.332598 4_2:-53460190 None:intergenic
AGCAGGTTCTTATGCATTGT+TGG 0.339619 4_2:+53459260 Msa0606820:CDS
ATACTGTCCTTCAGCAAAAC+AGG 0.343096 4_2:-53459210 None:intergenic
ATGCCATTTGGAATCTGTTT+TGG 0.346624 4_2:+53461435 Msa0606820:CDS
CAGGAAAAGACTAATGAGTA+TGG 0.349839 4_2:+53461192 Msa0606820:intron
TCAGAAATGACAAGTGGAAT+TGG 0.351271 4_2:+53461234 Msa0606820:CDS
TAACATGGTTGCAGTTTCAT+TGG 0.354483 4_2:+53459867 Msa0606820:CDS
GGTCTCAATGGAAAGAAAAT+AGG 0.357122 4_2:+53460268 Msa0606820:CDS
GTATCTTGACGAGGTGAAAT+TGG 0.364768 4_2:-53459988 None:intergenic
CAATTTGAATTCTGAAAGTA+AGG 0.368656 4_2:-53460633 None:intergenic
CGTGACCGCTCGTTGCTTCA+TGG 0.370871 4_2:+53459183 Msa0606820:CDS
AACATGGTTGCAGTTTCATT+GGG 0.371572 4_2:+53459868 Msa0606820:CDS
CATAAATACATACTAAAATA+GGG 0.375693 4_2:-53460736 None:intergenic
GCAGGTTCTTATGCATTGTT+GGG 0.382233 4_2:+53459261 Msa0606820:CDS
CAGCACCAAGTATTGGATTC+AGG 0.382460 4_2:-53459095 None:intergenic
GTGACATTGGATCCTTTATA+GGG 0.389701 4_2:-53460316 None:intergenic
CAATGTCACTTCCATCTTTG+AGG 0.393004 4_2:+53460330 Msa0606820:CDS
GCAGCTAAGTTTATACCTTC+AGG 0.395988 4_2:+53460217 Msa0606820:CDS
AGTCCTTGCGGGTCTAGCTT+TGG 0.397039 4_2:+53459823 Msa0606820:CDS
TTTGATAAAGAAGAATCAAT+TGG 0.401016 4_2:+53461317 Msa0606820:CDS
TCTGAAACTGTCCTGCATAT+TGG 0.401701 4_2:-53460130 None:intergenic
CTCAATAAACAAGGTCTCAA+TGG 0.407744 4_2:+53460256 Msa0606820:CDS
TTGTAGCTTCATAATCTCTT+GGG 0.418485 4_2:-53460189 None:intergenic
CCACCGTTGGACTCACTAGT+AGG 0.419110 4_2:+53459953 Msa0606820:CDS
CTAGTCTCTCGGAGTGGTAT+GGG 0.419677 4_2:+53459355 Msa0606820:CDS
CATTGAGACCTTGTTTATTG+AGG 0.434452 4_2:-53460255 None:intergenic
CCAGCTGGGACAGTGATTGC+AGG 0.438864 4_2:-53461396 None:intergenic
GCTTCTCCAATGTTGGCAAT+TGG 0.439223 4_2:+53461366 Msa0606820:CDS
ACATGTGGTTTCGAAATTAA+GGG 0.446335 4_2:+53459305 Msa0606820:CDS
TCCAACACAGCACCAAGTAT+TGG 0.446346 4_2:-53459102 None:intergenic
TCTGCTTGATCTCGAGCGTC+AGG 0.448953 4_2:-53459132 None:intergenic
ACAACTGAATTGTGATCAGC+TGG 0.450183 4_2:-53459919 None:intergenic
CGCCAGAGGTGGATTTGCAT+TGG 0.451539 4_2:+53459410 Msa0606820:CDS
CATGTGCTTGATGTAATTGT+TGG 0.452305 4_2:+53460160 Msa0606820:CDS
GATAGCGAAGGAATGCCATT+TGG 0.455549 4_2:+53461423 Msa0606820:CDS
TGGAGTCTAAAAGTCCTTGC+GGG 0.463261 4_2:+53459812 Msa0606820:CDS
TCTCCAATGTTGGCAATTGG+AGG 0.468557 4_2:+53461369 Msa0606820:CDS
GCTGATCACAATTCAGTTGT+CGG 0.471714 4_2:+53459922 Msa0606820:CDS
ACTAGTCTCTCGGAGTGGTA+TGG 0.475334 4_2:+53459354 Msa0606820:CDS
GATAAACTCAACACTTCAGC+AGG 0.475725 4_2:+53459243 Msa0606820:CDS
ATGACAAGTGGAATTGGAAA+AGG 0.477884 4_2:+53461240 Msa0606820:CDS
CCTGCAATCACTGTCCCAGC+TGG 0.480272 4_2:+53461396 Msa0606820:CDS
GAAGCCGGTGCCATTATTCT+GGG 0.492758 4_2:+53459327 Msa0606820:CDS
AGACTTGACCGATAGCTTTG+TGG 0.493754 4_2:+53461587 Msa0606820:three_prime_UTR
CTCAAAGATGGAAGTGACAT+TGG 0.496520 4_2:-53460329 None:intergenic
CATGTTAGTTGCCACTGAAA+TGG 0.497625 4_2:-53459851 None:intergenic
CCTTCGCTATCATATCCAGC+TGG 0.499262 4_2:-53461411 None:intergenic
GTGACCGCTCGTTGCTTCAT+GGG 0.502974 4_2:+53459184 Msa0606820:CDS
CTCTGATGCTTCTCCAATGT+TGG 0.503905 4_2:+53461359 Msa0606820:CDS
AATCTCAGCTAGAGACTTCA+CGG 0.505013 4_2:-53460693 None:intergenic
CGCTCGAGATCAAGCAGACA+AGG 0.505254 4_2:+53459137 Msa0606820:CDS
TTATGCATTGTTGGGATCGA+AGG 0.506206 4_2:+53459269 Msa0606820:CDS
ATTGAGATGGTCCTCAAAGA+TGG 0.506790 4_2:-53460341 None:intergenic
CATTTCAGTGGCAACTAACA+TGG 0.509195 4_2:+53459852 Msa0606820:CDS
TGGAGAAGCATCAGAGCCTA+TGG 0.512587 4_2:-53461352 None:intergenic
GAATCAATTGGATGCAGTGT+TGG 0.513137 4_2:+53461329 Msa0606820:CDS
CAAAGCTATCGGTCAAGTCT+AGG 0.520133 4_2:-53461584 None:intergenic
CCACCAAAACAGATTCCAAA+TGG 0.522144 4_2:-53461438 None:intergenic
GAGGGGTGGCTTCCTTGTCC+TGG 0.523166 4_2:-53461517 None:intergenic
AACCAATGCAAATCCACCTC+TGG 0.526339 4_2:-53459412 None:intergenic
TCACCTCGTCAAGATACTAT+CGG 0.527519 4_2:+53459994 Msa0606820:CDS
TACCCTCCAATTGCCAACAT+TGG 0.534176 4_2:-53461372 None:intergenic
GAAGCTTGGTGCGCCAGAGG+TGG 0.536770 4_2:+53459399 Msa0606820:CDS
CACCTCGTCAAGATACTATC+GGG 0.539125 4_2:+53459995 Msa0606820:CDS
TTGGATGCAGTGTTGGCCAT+AGG 0.542689 4_2:+53461336 Msa0606820:CDS
AAAGACTAATGAGTATGGGC+AGG 0.545033 4_2:+53461197 Msa0606820:CDS
TCCAATACTTGGTGCTGTGT+TGG 0.545546 4_2:+53459101 Msa0606820:CDS
TACAATCACCACAAAGCTAT+CGG 0.545780 4_2:-53461595 None:intergenic
TGTTATGCAGAATCCTTATG+TGG 0.546341 4_2:+53459792 Msa0606820:intron
AAGGTCCTGAATCCAATACT+TGG 0.547427 4_2:+53459090 Msa0606820:CDS
GTTTCGAAATTAAGGGAAGC+CGG 0.556197 4_2:+53459312 Msa0606820:CDS
AATTGAAGCAATGAAGATGA+TGG 0.567872 4_2:+53461266 Msa0606820:CDS
CACCGTTGGACTCACTAGTA+GGG 0.568104 4_2:+53459954 Msa0606820:CDS
CTAACACTGTGCCAGAAGCT+TGG 0.569014 4_2:+53459385 Msa0606820:CDS
ACAATATTACATACACCCTC+CGG 0.569554 4_2:+53461636 Msa0606820:three_prime_UTR
CTCCAATGTTGGCAATTGGA+GGG 0.574109 4_2:+53461370 Msa0606820:CDS
CCAGAAGCTTGGTGCGCCAG+AGG 0.575202 4_2:+53459396 Msa0606820:CDS
TCATTTCACCACTTTGAAGA+GGG 0.576827 4_2:-53460607 None:intergenic
ACAAAGAGGGGCAACAGTGG+TGG 0.577372 4_2:+53460547 Msa0606820:CDS
TCTGGGGAAAACTAGTCTCT+CGG 0.577590 4_2:+53459344 Msa0606820:CDS
ATCATTTCACCACTTTGAAG+AGG 0.579767 4_2:-53460608 None:intergenic
TTTACCTCAACACATTGAGA+TGG 0.579955 4_2:-53460354 None:intergenic
GTCGGAATCAAGCCCACCGT+TGG 0.580429 4_2:+53459940 Msa0606820:CDS
CTTCGCTATCATATCCAGCT+GGG 0.583149 4_2:-53461410 None:intergenic
GTTGGACTCACTAGTAGGGC+TGG 0.583241 4_2:+53459958 Msa0606820:CDS
TTGAGCAAGCTACCAGGACA+AGG 0.587838 4_2:+53461505 Msa0606820:CDS
TATGCAAATCAAGACAAAGA+GGG 0.587876 4_2:+53460534 Msa0606820:intron
TTTCCCCAGAATAATGGCAC+CGG 0.588790 4_2:-53459331 None:intergenic
AGGAAAAGACTAATGAGTAT+GGG 0.589935 4_2:+53461193 Msa0606820:intron
AGTTTCAACAAATAAAGAGA+TGG 0.592489 4_2:+53458891 Msa0606820:CDS
ATCTCAGCTAGAGACTTCAC+GGG 0.597190 4_2:-53460692 None:intergenic
TGAAGTGTTGAGTTTATCAA+AGG 0.598308 4_2:-53459238 None:intergenic
AGGACCATCTCAATGTGTTG+AGG 0.598729 4_2:+53460350 Msa0606820:CDS
TAGTCTCTCGGAGTGGTATG+GGG 0.603289 4_2:+53459356 Msa0606820:CDS
GAAACCACATGTGCGTCACG+TGG 0.611446 4_2:-53459294 None:intergenic
CTTTGGATCAGCCATTTCAG+TGG 0.617090 4_2:+53459840 Msa0606820:CDS
GGTTCCACGTGACGCACATG+TGG 0.618497 4_2:+53459290 Msa0606820:CDS
GCTAAGTTTATACCTTCAGG+TGG 0.620054 4_2:+53460220 Msa0606820:CDS
ATATGCAAATCAAGACAAAG+AGG 0.625787 4_2:+53460533 Msa0606820:intron
AACTAACTGGAATGCTACCA+TGG 0.627095 4_2:-53458872 None:intergenic
ATGGCATCAGAAATGACAAG+TGG 0.628000 4_2:+53461228 Msa0606820:CDS
GTGGAGTCTAAAAGTCCTTG+CGG 0.628103 4_2:+53459811 Msa0606820:CDS
ATGCAAATCAAGACAAAGAG+GGG 0.631749 4_2:+53460535 Msa0606820:intron
AAGACAAAGAGGGGCAACAG+TGG 0.635403 4_2:+53460544 Msa0606820:intron
CCAGCTGGATATGATAGCGA+AGG 0.637953 4_2:+53461411 Msa0606820:CDS
TACTGTCCTTCAGCAAAACA+GGG 0.638923 4_2:-53459209 None:intergenic
TCATGTGTGAATGAAAAGCG+AGG 0.639049 4_2:-53461536 None:intergenic
ACATGGTTGCAGTTTCATTG+GGG 0.641691 4_2:+53459869 Msa0606820:CDS
GATCCAAAGCTAGACCCGCA+AGG 0.645373 4_2:-53459826 None:intergenic
CTACTAGTGAGTCCAACGGT+GGG 0.650363 4_2:-53459952 None:intergenic
AAGCAATTCCTCAATAAACA+AGG 0.659450 4_2:+53460247 Msa0606820:CDS
GTTCTGGACCCTCTTCAAAG+TGG 0.660370 4_2:+53460599 Msa0606820:CDS
CATGTGTGAATGAAAAGCGA+GGG 0.669751 4_2:-53461535 None:intergenic
AATTGCTTATAACCACCTGA+AGG 0.670396 4_2:-53460232 None:intergenic
CCTACTAGTGAGTCCAACGG+TGG 0.675556 4_2:-53459953 None:intergenic
AAGCCGGTGCCATTATTCTG+GGG 0.694883 4_2:+53459328 Msa0606820:CDS
TCATTGGGGACAGAAACTGA+TGG 0.695584 4_2:+53459883 Msa0606820:CDS
TAAATAATAACTAACCACCA+TGG 0.697804 4_2:+53458855 None:intergenic
TGTGAATGAAAAGCGAGGGG+TGG 0.698305 4_2:-53461531 None:intergenic
AGCCCTACTAGTGAGTCCAA+CGG 0.702539 4_2:-53459956 None:intergenic
CAACTGAATTGTGATCAGCT+GGG 0.702745 4_2:-53459918 None:intergenic
ACTTTGAAGAGGGTCCAGAA+CGG 0.708246 4_2:-53460597 None:intergenic
TAACTGGAATGCTACCATGG+TGG 0.727219 4_2:-53458869 None:intergenic
GGATCCCATGAAGCAACGAG+CGG 0.729608 4_2:-53459188 None:intergenic
ATGTGTGAATGAAAAGCGAG+GGG 0.754399 4_2:-53461534 None:intergenic
TACCCGATAGTATCTTGACG+AGG 0.755148 4_2:-53459997 None:intergenic
GGAAAACTAGTCTCTCGGAG+TGG 0.758159 4_2:+53459349 Msa0606820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTTAAGGATAATATT+AGG + chr4_2:53461560-53461579 Msa0606820:exon 10.0%
!!! GATTTAGAATTTAATTACAT+TGG + chr4_2:53459626-53459645 Msa0606820:intron 15.0%
!!! TATATATATATATTTTGCAC+AGG + chr4_2:53460107-53460126 Msa0606820:intron 15.0%
!! ATATAATAAAACAGACAAAA+TGG - chr4_2:53460517-53460536 None:intergenic 15.0%
!! CATAAATACATACTAAAATA+GGG - chr4_2:53460739-53460758 None:intergenic 15.0%
!! ACATAAATACATACTAAAAT+AGG - chr4_2:53460740-53460759 None:intergenic 15.0%
!! AATTTAATGTATCTAAAAAG+TGG + chr4_2:53461743-53461762 Msa0606820:intron 15.0%
!! TAACATGTTAACTTTGATAT+TGG + chr4_2:53459514-53459533 Msa0606820:intron 20.0%
!! AAATTTAGCATTAAATAGAG+TGG + chr4_2:53459654-53459673 Msa0606820:intron 20.0%
!!! TTCCCACATTTAAAATTAAA+GGG - chr4_2:53460081-53460100 None:intergenic 20.0%
!!! ATTCCCACATTTAAAATTAA+AGG - chr4_2:53460082-53460101 None:intergenic 20.0%
!!! ATTATAATTAACTTGAGCTA+AGG - chr4_2:53460831-53460850 None:intergenic 20.0%
!!! GTGTTTTATAATATTTTGCT+CGG + chr4_2:53461130-53461149 Msa0606820:intron 20.0%
!! TTTGATAAAGAAGAATCAAT+TGG + chr4_2:53461317-53461336 Msa0606820:CDS 20.0%
!! TCACACATGAAAAAAATTTA+AGG + chr4_2:53461549-53461568 Msa0606820:CDS 20.0%
!!! TTTTTGCTTATATTAGTAAC+CGG - chr4_2:53461658-53461677 None:intergenic 20.0%
!! CTTTATTTGTTGAAACTAAC+TGG - chr4_2:53458888-53458907 None:intergenic 25.0%
! AGTTTCAACAAATAAAGAGA+TGG + chr4_2:53458891-53458910 Msa0606820:CDS 25.0%
! AATTCCTCATGAAATAGAAT+AGG + chr4_2:53459459-53459478 Msa0606820:intron 25.0%
! TGATATGATAACTTTGACAT+TGG + chr4_2:53459708-53459727 Msa0606820:intron 25.0%
!!! ACATTGGTTGATTTAATTTG+AGG + chr4_2:53459724-53459743 Msa0606820:intron 25.0%
!!! TTGCCCTTTAATTTTAAATG+TGG + chr4_2:53460075-53460094 Msa0606820:intron 25.0%
!!! TGCCCTTTAATTTTAAATGT+GGG + chr4_2:53460076-53460095 Msa0606820:intron 25.0%
!! CAATTTGAATTCTGAAAGTA+AGG - chr4_2:53460636-53460655 None:intergenic 25.0%
! GTCATTCAAAAAGAATTAAG+AGG - chr4_2:53460767-53460786 None:intergenic 25.0%
! CTTATGCATAATGCATAATA+GGG - chr4_2:53460910-53460929 None:intergenic 25.0%
! TCTTATGCATAATGCATAAT+AGG - chr4_2:53460911-53460930 None:intergenic 25.0%
! TTGAATATAACTACATGTGT+CGG - chr4_2:53461058-53461077 None:intergenic 25.0%
!! ATATTTTGCTCGGTTTAATT+TGG + chr4_2:53461140-53461159 Msa0606820:intron 25.0%
!! TTTTTGCTTATATTAGTGAC+CGG + chr4_2:53461767-53461786 Msa0606820:intron 25.0%
! CTTTTACTTACACAGAATCA+AGG + chr4_2:53459071-53459090 Msa0606820:CDS 30.0%
!! TGAAGTGTTGAGTTTATCAA+AGG - chr4_2:53459241-53459260 None:intergenic 30.0%
ACATGTGGTTTCGAAATTAA+GGG + chr4_2:53459305-53459324 Msa0606820:CDS 30.0%
CAATCCTATTCTATTTCATG+AGG - chr4_2:53459466-53459485 None:intergenic 30.0%
TTGTAGCTTCATAATCTCTT+GGG - chr4_2:53460192-53460211 None:intergenic 30.0%
TTTGTAGCTTCATAATCTCT+TGG - chr4_2:53460193-53460212 None:intergenic 30.0%
AAGCAATTCCTCAATAAACA+AGG + chr4_2:53460247-53460266 Msa0606820:CDS 30.0%
! GAAAGAAAATAGGTGTTTTG+AGG + chr4_2:53460278-53460297 Msa0606820:CDS 30.0%
CCTTTATAGGGAATCAAAAA+TGG - chr4_2:53460307-53460326 None:intergenic 30.0%
!! CCATTTTTGATTCCCTATAA+AGG + chr4_2:53460304-53460323 Msa0606820:CDS 30.0%
ATATGCAAATCAAGACAAAG+AGG + chr4_2:53460533-53460552 Msa0606820:intron 30.0%
TATGCAAATCAAGACAAAGA+GGG + chr4_2:53460534-53460553 Msa0606820:intron 30.0%
TTTGGTTGTTGATCTGTTTA+TGG + chr4_2:53461158-53461177 Msa0606820:intron 30.0%
AGGAAAAGACTAATGAGTAT+GGG + chr4_2:53461193-53461212 Msa0606820:intron 30.0%
AATTGAAGCAATGAAGATGA+TGG + chr4_2:53461266-53461285 Msa0606820:CDS 30.0%
TGCTTCTTGTATGTCTTCTA+TGG - chr4_2:53459013-53459032 None:intergenic 35.0%
CACATGTGGTTTCGAAATTA+AGG + chr4_2:53459304-53459323 Msa0606820:CDS 35.0%
!!! ACTAGTTTTCCCCAGAATAA+TGG - chr4_2:53459340-53459359 None:intergenic 35.0%
TGTTATGCAGAATCCTTATG+TGG + chr4_2:53459792-53459811 Msa0606820:intron 35.0%
TAACATGGTTGCAGTTTCAT+TGG + chr4_2:53459867-53459886 Msa0606820:CDS 35.0%
AACATGGTTGCAGTTTCATT+GGG + chr4_2:53459868-53459887 Msa0606820:CDS 35.0%
CATGTGCTTGATGTAATTGT+TGG + chr4_2:53460160-53460179 Msa0606820:CDS 35.0%
AATTGCTTATAACCACCTGA+AGG - chr4_2:53460235-53460254 None:intergenic 35.0%
! CATTGAGACCTTGTTTATTG+AGG - chr4_2:53460258-53460277 None:intergenic 35.0%
CTCAATAAACAAGGTCTCAA+TGG + chr4_2:53460256-53460275 Msa0606820:CDS 35.0%
GGTCTCAATGGAAAGAAAAT+AGG + chr4_2:53460268-53460287 Msa0606820:CDS 35.0%
GTGACATTGGATCCTTTATA+GGG - chr4_2:53460319-53460338 None:intergenic 35.0%
AGTGACATTGGATCCTTTAT+AGG - chr4_2:53460320-53460339 None:intergenic 35.0%
TTTACCTCAACACATTGAGA+TGG - chr4_2:53460357-53460376 None:intergenic 35.0%
AGAATCAATGACCAATTGAG+GGG - chr4_2:53460408-53460427 None:intergenic 35.0%
GAGAATCAATGACCAATTGA+GGG - chr4_2:53460409-53460428 None:intergenic 35.0%
TGAGAATCAATGACCAATTG+AGG - chr4_2:53460410-53460429 None:intergenic 35.0%
ATGCAAATCAAGACAAAGAG+GGG + chr4_2:53460535-53460554 Msa0606820:intron 35.0%
! AGAAAATTTAAGCACCGTTC+TGG + chr4_2:53460583-53460602 Msa0606820:CDS 35.0%
! TCATTTCACCACTTTGAAGA+GGG - chr4_2:53460610-53460629 None:intergenic 35.0%
! ATCATTTCACCACTTTGAAG+AGG - chr4_2:53460611-53460630 None:intergenic 35.0%
TATTATTCTAGTGTCGTGTC+TGG + chr4_2:53461096-53461115 Msa0606820:intron 35.0%
! GTTTATGGTTTTCTTGTGAC+AGG + chr4_2:53461173-53461192 Msa0606820:intron 35.0%
CAGGAAAAGACTAATGAGTA+TGG + chr4_2:53461192-53461211 Msa0606820:intron 35.0%
!!! GTATGGGCAGGATTTTTTTA+TGG + chr4_2:53461209-53461228 Msa0606820:CDS 35.0%
TCAGAAATGACAAGTGGAAT+TGG + chr4_2:53461234-53461253 Msa0606820:CDS 35.0%
ATGACAAGTGGAATTGGAAA+AGG + chr4_2:53461240-53461259 Msa0606820:CDS 35.0%
ATGGAGCAGTTGTCAAAAAA+TGG + chr4_2:53461285-53461304 Msa0606820:CDS 35.0%
TGGAGCAGTTGTCAAAAAAT+GGG + chr4_2:53461286-53461305 Msa0606820:CDS 35.0%
!! ATGCCATTTGGAATCTGTTT+TGG + chr4_2:53461435-53461454 Msa0606820:CDS 35.0%
!!! CATTTGGAATCTGTTTTGGT+GGG + chr4_2:53461439-53461458 Msa0606820:CDS 35.0%
!!! AATCTGTTTTGGTGGGTTAA+AGG + chr4_2:53461446-53461465 Msa0606820:CDS 35.0%
!!! ATCTGTTTTGGTGGGTTAAA+GGG + chr4_2:53461447-53461466 Msa0606820:CDS 35.0%
TACAATCACCACAAAGCTAT+CGG - chr4_2:53461598-53461617 None:intergenic 35.0%
ACAATATTACATACACCCTC+CGG + chr4_2:53461636-53461655 Msa0606820:three_prime_UTR 35.0%
TGCTTATATTAGTAACCGGA+GGG - chr4_2:53461654-53461673 None:intergenic 35.0%
TTGCTTATATTAGTAACCGG+AGG - chr4_2:53461655-53461674 None:intergenic 35.0%
! ACCGGAAGGTGTATTTAATT+AGG + chr4_2:53461785-53461804 Msa0606820:intron 35.0%
CCCTAATTAAATACACCTTC+CGG - chr4_2:53461789-53461808 None:intergenic 35.0%
! CCGGAAGGTGTATTTAATTA+GGG + chr4_2:53461786-53461805 Msa0606820:intron 35.0%
AACTAACTGGAATGCTACCA+TGG - chr4_2:53458875-53458894 None:intergenic 40.0%
AAGGTCCTGAATCCAATACT+TGG + chr4_2:53459090-53459109 Msa0606820:CDS 40.0%
TACTGTCCTTCAGCAAAACA+GGG - chr4_2:53459212-53459231 None:intergenic 40.0%
ATACTGTCCTTCAGCAAAAC+AGG - chr4_2:53459213-53459232 None:intergenic 40.0%
GATAAACTCAACACTTCAGC+AGG + chr4_2:53459243-53459262 Msa0606820:CDS 40.0%
AGCAGGTTCTTATGCATTGT+TGG + chr4_2:53459260-53459279 Msa0606820:CDS 40.0%
GCAGGTTCTTATGCATTGTT+GGG + chr4_2:53459261-53459280 Msa0606820:CDS 40.0%
TTATGCATTGTTGGGATCGA+AGG + chr4_2:53459269-53459288 Msa0606820:CDS 40.0%
GTTTCGAAATTAAGGGAAGC+CGG + chr4_2:53459312-53459331 Msa0606820:CDS 40.0%
! GGACTTTTAGACTCCACATA+AGG - chr4_2:53459808-53459827 None:intergenic 40.0%
CATGTTAGTTGCCACTGAAA+TGG - chr4_2:53459854-53459873 None:intergenic 40.0%
CATTTCAGTGGCAACTAACA+TGG + chr4_2:53459852-53459871 Msa0606820:CDS 40.0%
ACATGGTTGCAGTTTCATTG+GGG + chr4_2:53459869-53459888 Msa0606820:CDS 40.0%
CAACTGAATTGTGATCAGCT+GGG - chr4_2:53459921-53459940 None:intergenic 40.0%
ACAACTGAATTGTGATCAGC+TGG - chr4_2:53459922-53459941 None:intergenic 40.0%
GCTGATCACAATTCAGTTGT+CGG + chr4_2:53459922-53459941 Msa0606820:CDS 40.0%
GTATCTTGACGAGGTGAAAT+TGG - chr4_2:53459991-53460010 None:intergenic 40.0%
TCACCTCGTCAAGATACTAT+CGG + chr4_2:53459994-53460013 Msa0606820:CDS 40.0%
AAAGGGCAAAACTACATCAG+AGG - chr4_2:53460064-53460083 None:intergenic 40.0%
! TCTGAAACTGTCCTGCATAT+TGG - chr4_2:53460133-53460152 None:intergenic 40.0%
GCAGCTAAGTTTATACCTTC+AGG + chr4_2:53460217-53460236 Msa0606820:CDS 40.0%
GCTAAGTTTATACCTTCAGG+TGG + chr4_2:53460220-53460239 Msa0606820:CDS 40.0%
CTCAAAGATGGAAGTGACAT+TGG - chr4_2:53460332-53460351 None:intergenic 40.0%
! CAATGTCACTTCCATCTTTG+AGG + chr4_2:53460330-53460349 Msa0606820:CDS 40.0%
ATTGAGATGGTCCTCAAAGA+TGG - chr4_2:53460344-53460363 None:intergenic 40.0%
AATCTCAGCTAGAGACTTCA+CGG - chr4_2:53460696-53460715 None:intergenic 40.0%
GCTAAGGTATAAGCAGTTTG+AGG - chr4_2:53460815-53460834 None:intergenic 40.0%
AAAGACTAATGAGTATGGGC+AGG + chr4_2:53461197-53461216 Msa0606820:CDS 40.0%
ATGGCATCAGAAATGACAAG+TGG + chr4_2:53461228-53461247 Msa0606820:CDS 40.0%
GAATCAATTGGATGCAGTGT+TGG + chr4_2:53461329-53461348 Msa0606820:CDS 40.0%
CCACCAAAACAGATTCCAAA+TGG - chr4_2:53461441-53461460 None:intergenic 40.0%
!! CCATTTGGAATCTGTTTTGG+TGG + chr4_2:53461438-53461457 Msa0606820:CDS 40.0%
! ATGATTTTGAGCAAGCTACC+AGG + chr4_2:53461499-53461518 Msa0606820:CDS 40.0%
ATGTGTGAATGAAAAGCGAG+GGG - chr4_2:53461537-53461556 None:intergenic 40.0%
CATGTGTGAATGAAAAGCGA+GGG - chr4_2:53461538-53461557 None:intergenic 40.0%
TCATGTGTGAATGAAAAGCG+AGG - chr4_2:53461539-53461558 None:intergenic 40.0%
TGCTTATATTAGTGACCGGA+AGG + chr4_2:53461771-53461790 Msa0606820:intron 40.0%
TAACTGGAATGCTACCATGG+TGG - chr4_2:53458872-53458891 None:intergenic 45.0%
!! CAGCACCAAGTATTGGATTC+AGG - chr4_2:53459098-53459117 None:intergenic 45.0%
!! TCCAATACTTGGTGCTGTGT+TGG + chr4_2:53459101-53459120 Msa0606820:CDS 45.0%
TCCAACACAGCACCAAGTAT+TGG - chr4_2:53459105-53459124 None:intergenic 45.0%
TTTCCCCAGAATAATGGCAC+CGG - chr4_2:53459334-53459353 None:intergenic 45.0%
! TCTGGGGAAAACTAGTCTCT+CGG + chr4_2:53459344-53459363 Msa0606820:CDS 45.0%
AACCAATGCAAATCCACCTC+TGG - chr4_2:53459415-53459434 None:intergenic 45.0%
GTGGAGTCTAAAAGTCCTTG+CGG + chr4_2:53459811-53459830 Msa0606820:CDS 45.0%
TGGAGTCTAAAAGTCCTTGC+GGG + chr4_2:53459812-53459831 Msa0606820:CDS 45.0%
CTTTGGATCAGCCATTTCAG+TGG + chr4_2:53459840-53459859 Msa0606820:CDS 45.0%
TCATTGGGGACAGAAACTGA+TGG + chr4_2:53459883-53459902 Msa0606820:CDS 45.0%
CACCTCGTCAAGATACTATC+GGG + chr4_2:53459995-53460014 Msa0606820:CDS 45.0%
TACCCGATAGTATCTTGACG+AGG - chr4_2:53460000-53460019 None:intergenic 45.0%
! TTTTGCACAGGCCAATATGC+AGG + chr4_2:53460119-53460138 Msa0606820:intron 45.0%
AGGACCATCTCAATGTGTTG+AGG + chr4_2:53460350-53460369 Msa0606820:CDS 45.0%
CATAACACACACCCCTCAAT+TGG + chr4_2:53460394-53460413 Msa0606820:intron 45.0%
!! GGCAACAGTGGTGGATAATT+TGG + chr4_2:53460556-53460575 Msa0606820:CDS 45.0%
! ACTTTGAAGAGGGTCCAGAA+CGG - chr4_2:53460600-53460619 None:intergenic 45.0%
ATCTCAGCTAGAGACTTCAC+GGG - chr4_2:53460695-53460714 None:intergenic 45.0%
! TAACTACATGTGTCGGTGTC+AGG - chr4_2:53461051-53461070 None:intergenic 45.0%
CTCTGATGCTTCTCCAATGT+TGG + chr4_2:53461359-53461378 Msa0606820:CDS 45.0%
GCTTCTCCAATGTTGGCAAT+TGG + chr4_2:53461366-53461385 Msa0606820:CDS 45.0%
TCTCCAATGTTGGCAATTGG+AGG + chr4_2:53461369-53461388 Msa0606820:CDS 45.0%
CTCCAATGTTGGCAATTGGA+GGG + chr4_2:53461370-53461389 Msa0606820:CDS 45.0%
TACCCTCCAATTGCCAACAT+TGG - chr4_2:53461375-53461394 None:intergenic 45.0%
CTTCGCTATCATATCCAGCT+GGG - chr4_2:53461413-53461432 None:intergenic 45.0%
GATAGCGAAGGAATGCCATT+TGG + chr4_2:53461423-53461442 Msa0606820:CDS 45.0%
CAAAGCTATCGGTCAAGTCT+AGG - chr4_2:53461587-53461606 None:intergenic 45.0%
! AGACTTGACCGATAGCTTTG+TGG + chr4_2:53461587-53461606 Msa0606820:three_prime_UTR 45.0%
! TGGGATCCCTGTTTTGCTGA+AGG + chr4_2:53459203-53459222 Msa0606820:CDS 50.0%
!! GAAGCCGGTGCCATTATTCT+GGG + chr4_2:53459327-53459346 Msa0606820:CDS 50.0%
!! AAGCCGGTGCCATTATTCTG+GGG + chr4_2:53459328-53459347 Msa0606820:CDS 50.0%
! GGAAAACTAGTCTCTCGGAG+TGG + chr4_2:53459349-53459368 Msa0606820:CDS 50.0%
! ACTAGTCTCTCGGAGTGGTA+TGG + chr4_2:53459354-53459373 Msa0606820:CDS 50.0%
CTAGTCTCTCGGAGTGGTAT+GGG + chr4_2:53459355-53459374 Msa0606820:CDS 50.0%
TAGTCTCTCGGAGTGGTATG+GGG + chr4_2:53459356-53459375 Msa0606820:CDS 50.0%
CTAACACTGTGCCAGAAGCT+TGG + chr4_2:53459385-53459404 Msa0606820:CDS 50.0%
CTACTAGTGAGTCCAACGGT+GGG - chr4_2:53459955-53459974 None:intergenic 50.0%
CACCGTTGGACTCACTAGTA+GGG + chr4_2:53459954-53459973 Msa0606820:CDS 50.0%
AGCCCTACTAGTGAGTCCAA+CGG - chr4_2:53459959-53459978 None:intergenic 50.0%
AAGACAAAGAGGGGCAACAG+TGG + chr4_2:53460544-53460563 Msa0606820:intron 50.0%
! GTTCTGGACCCTCTTCAAAG+TGG + chr4_2:53460599-53460618 Msa0606820:CDS 50.0%
!! TTGGATGCAGTGTTGGCCAT+AGG + chr4_2:53461336-53461355 Msa0606820:CDS 50.0%
!! TGGAGAAGCATCAGAGCCTA+TGG - chr4_2:53461355-53461374 None:intergenic 50.0%
CCTTCGCTATCATATCCAGC+TGG - chr4_2:53461414-53461433 None:intergenic 50.0%
! CCAGCTGGATATGATAGCGA+AGG + chr4_2:53461411-53461430 Msa0606820:CDS 50.0%
TTGAGCAAGCTACCAGGACA+AGG + chr4_2:53461505-53461524 Msa0606820:CDS 50.0%
TGTGAATGAAAAGCGAGGGG+TGG - chr4_2:53461534-53461553 None:intergenic 50.0%
TCTGCTTGATCTCGAGCGTC+AGG - chr4_2:53459135-53459154 None:intergenic 55.0%
CGCTCGAGATCAAGCAGACA+AGG + chr4_2:53459137-53459156 Msa0606820:CDS 55.0%
GTGACCGCTCGTTGCTTCAT+GGG + chr4_2:53459184-53459203 Msa0606820:CDS 55.0%
GGATCCCATGAAGCAACGAG+CGG - chr4_2:53459191-53459210 None:intergenic 55.0%
GAAACCACATGTGCGTCACG+TGG - chr4_2:53459297-53459316 None:intergenic 55.0%
!! GGAAGCCGGTGCCATTATTC+TGG + chr4_2:53459326-53459345 Msa0606820:CDS 55.0%
! CGCCAGAGGTGGATTTGCAT+TGG + chr4_2:53459410-53459429 Msa0606820:CDS 55.0%
! AGTCCTTGCGGGTCTAGCTT+TGG + chr4_2:53459823-53459842 Msa0606820:CDS 55.0%
GATCCAAAGCTAGACCCGCA+AGG - chr4_2:53459829-53459848 None:intergenic 55.0%
CCTACTAGTGAGTCCAACGG+TGG - chr4_2:53459956-53459975 None:intergenic 55.0%
CCACCGTTGGACTCACTAGT+AGG + chr4_2:53459953-53459972 Msa0606820:CDS 55.0%
GTTGGACTCACTAGTAGGGC+TGG + chr4_2:53459958-53459977 Msa0606820:CDS 55.0%
ACAAAGAGGGGCAACAGTGG+TGG + chr4_2:53460547-53460566 Msa0606820:CDS 55.0%
CGTGACCGCTCGTTGCTTCA+TGG + chr4_2:53459183-53459202 Msa0606820:CDS 60.0%
GGTTCCACGTGACGCACATG+TGG + chr4_2:53459290-53459309 Msa0606820:CDS 60.0%
GTCGGAATCAAGCCCACCGT+TGG + chr4_2:53459940-53459959 Msa0606820:CDS 60.0%
CCAGCTGGGACAGTGATTGC+AGG - chr4_2:53461399-53461418 None:intergenic 60.0%
CCTGCAATCACTGTCCCAGC+TGG + chr4_2:53461396-53461415 Msa0606820:CDS 60.0%
CCTCTGGCGCACCAAGCTTC+TGG - chr4_2:53459399-53459418 None:intergenic 65.0%
!! CCAGAAGCTTGGTGCGCCAG+AGG + chr4_2:53459396-53459415 Msa0606820:CDS 65.0%
!! GAAGCTTGGTGCGCCAGAGG+TGG + chr4_2:53459399-53459418 Msa0606820:CDS 65.0%
GAGGGGTGGCTTCCTTGTCC+TGG - chr4_2:53461520-53461539 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 53458863 53461819 53458863 ID=Msa0606820;Name=Msa0606820
chr4_2 mRNA 53458863 53461819 53458863 ID=Msa0606820-mRNA-1;Parent=Msa0606820;Name=Msa0606820-mRNA-1;_AED=0.39;_eAED=0.39;_QI=11|1|1|1|0.8|0.66|6|101|529
chr4_2 exon 53458863 53459431 53458863 ID=Msa0606820-mRNA-1:exon:13190;Parent=Msa0606820-mRNA-1
chr4_2 exon 53459802 53460016 53459802 ID=Msa0606820-mRNA-1:exon:13191;Parent=Msa0606820-mRNA-1
chr4_2 exon 53460129 53460371 53460129 ID=Msa0606820-mRNA-1:exon:13192;Parent=Msa0606820-mRNA-1
chr4_2 exon 53460547 53460745 53460547 ID=Msa0606820-mRNA-1:exon:13193;Parent=Msa0606820-mRNA-1
chr4_2 exon 53461195 53461657 53461195 ID=Msa0606820-mRNA-1:exon:13194;Parent=Msa0606820-mRNA-1
chr4_2 exon 53461807 53461819 53461807 ID=Msa0606820-mRNA-1:exon:13195;Parent=Msa0606820-mRNA-1
chr4_2 five_prime_UTR 53458863 53458873 53458863 ID=Msa0606820-mRNA-1:five_prime_utr;Parent=Msa0606820-mRNA-1
chr4_2 CDS 53458874 53459431 53458874 ID=Msa0606820-mRNA-1:cds;Parent=Msa0606820-mRNA-1
chr4_2 CDS 53459802 53460016 53459802 ID=Msa0606820-mRNA-1:cds;Parent=Msa0606820-mRNA-1
chr4_2 CDS 53460129 53460371 53460129 ID=Msa0606820-mRNA-1:cds;Parent=Msa0606820-mRNA-1
chr4_2 CDS 53460547 53460745 53460547 ID=Msa0606820-mRNA-1:cds;Parent=Msa0606820-mRNA-1
chr4_2 CDS 53461195 53461569 53461195 ID=Msa0606820-mRNA-1:cds;Parent=Msa0606820-mRNA-1
chr4_2 three_prime_UTR 53461570 53461657 53461570 ID=Msa0606820-mRNA-1:three_prime_utr;Parent=Msa0606820-mRNA-1
chr4_2 three_prime_UTR 53461807 53461819 53461807 ID=Msa0606820-mRNA-1:three_prime_utr;Parent=Msa0606820-mRNA-1
Gene Sequence

>Msa0606820

ATGGTAGCATTCCAGTTAGTTTCAACAAATAAAGAGATGGCAACAAGAAGCAAAGTTTGTATTTCTCTAATATTATTTGCAGTAGCATTTGTCAATGCAATAGATGAATGTTCAGATTTTGCAATCGAAGAATCAACCATAGAAGACATACAAGAAGCATTCACACGAAACAAACTCACTTCAAGACAGCTCGTTGACTTTTACTTACACAGAATCAAGGTCCTGAATCCAATACTTGGTGCTGTGTTGGAACTCAATCCTGACGCTCGAGATCAAGCAGACAAGGCTGATTGTGAGAGACGAGAAGATCGTGACCGCTCGTTGCTTCATGGGATCCCTGTTTTGCTGAAGGACAGTATTGCAACCTTTGATAAACTCAACACTTCAGCAGGTTCTTATGCATTGTTGGGATCGAAGGTTCCACGTGACGCACATGTGGTTTCGAAATTAAGGGAAGCCGGTGCCATTATTCTGGGGAAAACTAGTCTCTCGGAGTGGTATGGGGTTCGTTCTAACACTGTGCCAGAAGCTTGGTGCGCCAGAGGTGGATTTGCATTGAATCCTTATGTGGAGTCTAAAAGTCCTTGCGGGTCTAGCTTTGGATCAGCCATTTCAGTGGCAACTAACATGGTTGCAGTTTCATTGGGGACAGAAACTGATGGCTCTATTATCTGCCCAGCTGATCACAATTCAGTTGTCGGAATCAAGCCCACCGTTGGACTCACTAGTAGGGCTGGTGTCATACCAATTTCACCTCGTCAAGATACTATCGGGCCAATATGCAGGACAGTTTCAGATGCAGTTCATGTGCTTGATGTAATTGTTGGATTTGACCCAAGAGATTATGAAGCTACAAAATCAGCAGCTAAGTTTATACCTTCAGGTGGTTATAAGCAATTCCTCAATAAACAAGGTCTCAATGGAAAGAAAATAGGTGTTTTGAGGAATCCATTTTTGATTCCCTATAAAGGATCCAATGTCACTTCCATCTTTGAGGACCATCTCAATGTGTTGAGACAAAGAGGGGCAACAGTGGTGGATAATTTGGAAGTAGAAAATTTAAGCACCGTTCTGGACCCTCTTCAAAGTGGTGAAATGATAACCTTACTTTCAGAATTCAAATTGTACATCAACAAATATCTGCAAGAGCTCACTTATTCTCCCGTGAAGTCTCTAGCTGAGATTATAGAATACAACGTCAACAACCCTATTTTAGAAAAGACTAATGAGTATGGGCAGGATTTTTTTATGGCATCAGAAATGACAAGTGGAATTGGAAAAGGTGAAATTGAAGCAATGAAGATGATGGAGCAGTTGTCAAAAAATGGGTTTGAGAGTTTGATAAAGAAGAATCAATTGGATGCAGTGTTGGCCATAGGCTCTGATGCTTCTCCAATGTTGGCAATTGGAGGGTATCCTGCAATCACTGTCCCAGCTGGATATGATAGCGAAGGAATGCCATTTGGAATCTGTTTTGGTGGGTTAAAGGGAACTGAGTCAAAACTGATTGAGATTGCTTATGATTTTGAGCAAGCTACCAGGACAAGGAAGCCACCCCTCGCTTTTCATTCACACATGAAAAAAATTTAA

Protein sequence

>Msa0606820

MVAFQLVSTNKEMATRSKVCISLILFAVAFVNAIDECSDFAIEESTIEDIQEAFTRNKLTSRQLVDFYLHRIKVLNPILGAVLELNPDARDQADKADCERREDRDRSLLHGIPVLLKDSIATFDKLNTSAGSYALLGSKVPRDAHVVSKLREAGAIILGKTSLSEWYGVRSNTVPEAWCARGGFALNPYVESKSPCGSSFGSAISVATNMVAVSLGTETDGSIICPADHNSVVGIKPTVGLTSRAGVIPISPRQDTIGPICRTVSDAVHVLDVIVGFDPRDYEATKSAAKFIPSGGYKQFLNKQGLNGKKIGVLRNPFLIPYKGSNVTSIFEDHLNVLRQRGATVVDNLEVENLSTVLDPLQSGEMITLLSEFKLYINKYLQELTYSPVKSLAEIIEYNVNNPILEKTNEYGQDFFMASEMTSGIGKGEIEAMKMMEQLSKNGFESLIKKNQLDAVLAIGSDASPMLAIGGYPAITVPAGYDSEGMPFGICFGGLKGTESKLIEIAYDFEQATRTRKPPLAFHSHMKKI*