AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032596

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032596.t1 MTR_6g005310 98.174 219 4 0 1 219 1 219 6.04e-157 433
MS.gene032596.t1 MTR_6g005340 97.727 220 5 0 1 220 1 220 7.35e-157 433
MS.gene032596.t1 MTR_6g005360 96.818 220 7 0 1 220 1 220 1.77e-155 429
MS.gene032596.t1 MTR_6g005330 95.455 220 10 0 1 220 1 220 7.39e-153 423
MS.gene032596.t1 MTR_1g079490 82.488 217 35 3 7 220 6 222 1.76e-124 351
MS.gene032596.t1 MTR_4g017040 76.018 221 52 1 1 220 1 221 2.98e-118 335
MS.gene032596.t1 MTR_4g017050 77.523 218 47 2 5 220 4 221 3.36e-118 335
MS.gene032596.t1 MTR_5g046410 77.523 218 47 2 5 220 4 221 3.52e-118 335
MS.gene032596.t1 MTR_5g046430 77.523 218 47 2 5 220 4 221 3.52e-118 335
MS.gene032596.t1 MTR_4g017030 77.523 218 47 2 5 220 4 221 3.52e-118 335
MS.gene032596.t1 MTR_2g019250 77.064 218 48 2 5 220 4 221 4.67e-118 335
MS.gene032596.t1 MTR_6g005350 75.000 220 54 1 1 220 1 219 3.52e-114 325
MS.gene032596.t1 MTR_6g005380 71.154 208 59 1 1 207 1 208 1.46e-102 295
MS.gene032596.t1 MTR_1g023770 62.814 199 64 2 19 215 19 209 5.76e-83 246
MS.gene032596.t1 MTR_2g030855 62.814 199 67 2 19 215 19 212 1.88e-82 244
MS.gene032596.t1 MTR_2g031270 62.000 200 68 3 19 215 19 213 2.21e-79 237
MS.gene032596.t1 MTR_2g030895 65.116 172 57 2 47 215 7 178 1.15e-74 223
MS.gene032596.t1 MTR_2g030865 65.116 172 57 2 47 215 7 178 3.38e-73 220
MS.gene032596.t1 MTR_2g031300 60.000 160 42 2 47 204 7 146 4.94e-58 181
MS.gene032596.t1 MTR_1g085500 46.190 210 103 4 11 214 8 213 4.97e-58 182
MS.gene032596.t1 MTR_7g111240 50.000 196 92 3 22 215 20 211 8.32e-55 174
MS.gene032596.t1 MTR_1g085140 47.000 200 100 3 18 215 20 215 3.97e-54 173
MS.gene032596.t1 MTR_7g111240 49.490 196 90 3 22 215 20 208 2.45e-52 168
MS.gene032596.t1 MTR_5g036570 48.223 197 95 4 22 215 27 219 1.36e-51 166
MS.gene032596.t1 MTR_1g112200 43.519 216 107 6 2 215 5 207 2.06e-47 155
MS.gene032596.t1 MTR_2g041550 41.589 214 110 5 1 212 3 203 1.60e-41 140
MS.gene032596.t1 MTR_1g060120 39.048 210 118 4 12 215 16 221 2.11e-41 140
MS.gene032596.t1 MTR_8g020750 43.455 191 89 5 5 189 7 184 7.35e-41 139
MS.gene032596.t1 MTR_2g041580 39.252 214 115 5 1 212 3 203 1.07e-38 133
MS.gene032596.t1 MTR_2g041570 39.070 215 116 5 1 213 3 204 1.08e-38 133
MS.gene032596.t1 MTR_3g019680 38.679 212 116 5 5 215 6 204 1.25e-34 122
MS.gene032596.t1 MTR_8g020630 37.736 212 119 5 5 215 6 205 4.87e-34 121
MS.gene032596.t1 MTR_3g019710 38.679 212 117 5 5 215 6 205 5.48e-34 121
MS.gene032596.t1 MTR_8g020590 39.474 190 107 4 26 213 19 202 7.94e-34 120
MS.gene032596.t1 MTR_8g007300 40.476 168 97 2 22 188 26 191 1.03e-33 120
MS.gene032596.t1 MTR_8g020650 40.212 189 105 4 28 215 24 205 7.18e-33 118
MS.gene032596.t1 MTR_3g019650 37.736 212 118 5 5 215 6 204 1.32e-32 117
MS.gene032596.t1 MTR_2g045100 38.208 212 118 5 5 215 6 205 5.92e-32 115
MS.gene032596.t1 MTR_2g036120 37.688 199 116 4 18 215 14 205 4.02e-31 113
MS.gene032596.t1 MTR_4g010340 39.655 174 98 4 43 215 34 201 1.68e-30 112
MS.gene032596.t1 MTR_8g020770 37.327 217 115 6 5 215 7 208 3.55e-30 111
MS.gene032596.t1 MTR_8g020670 36.449 214 123 6 3 215 4 205 3.75e-30 111
MS.gene032596.t1 MTR_2g044040 36.683 199 118 4 18 215 14 205 1.90e-29 109
MS.gene032596.t1 MTR_8g020760 35.377 212 129 4 5 215 3 207 6.72e-29 108
MS.gene032596.t1 MTR_2g086620 35.747 221 111 8 2 215 8 204 4.14e-28 105
MS.gene032596.t1 MTR_2g019780 35.023 217 130 6 1 215 1 208 4.16e-28 105
MS.gene032596.t1 MTR_2g086630 35.945 217 108 8 6 215 12 204 4.96e-28 105
MS.gene032596.t1 MTR_8g020610 38.947 190 106 6 28 215 22 203 5.83e-28 105
MS.gene032596.t1 MTR_0284s0010 35.377 212 124 5 5 215 6 205 7.03e-28 105
MS.gene032596.t1 MTR_4g052770 40.559 143 80 3 74 215 67 205 1.82e-27 104
MS.gene032596.t1 MTR_2g086640 34.884 215 121 6 2 215 7 203 2.66e-27 103
MS.gene032596.t1 MTR_4g052780 40.559 143 80 3 74 215 67 205 2.85e-27 103
MS.gene032596.t1 MTR_5g031460 34.673 199 122 4 18 215 14 205 3.29e-27 103
MS.gene032596.t1 MTR_3g096330 33.023 215 137 4 1 211 553 764 5.29e-27 108
MS.gene032596.t1 MTR_7g011340 36.649 191 113 4 26 215 22 205 9.71e-27 102
MS.gene032596.t1 MTR_8g020763 35.429 175 106 3 43 215 17 186 2.25e-26 100
MS.gene032596.t1 MTR_3g073170 37.037 189 109 5 28 215 27 206 5.91e-26 100
MS.gene032596.t1 MTR_2g030915 53.333 75 21 1 93 167 1 61 9.87e-20 80.9
MS.gene032596.t1 MTR_4g027415 39.683 126 70 3 26 150 22 142 3.54e-16 72.8
MS.gene032596.t1 MTR_3g019810 30.516 213 130 8 2 212 106 302 1.88e-15 73.9
MS.gene032596.t1 MTR_2g072560 40.385 104 59 2 18 120 14 115 1.08e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032596.t1 AT5G39120 63.927 219 75 3 1 215 1 219 9.70e-93 271
MS.gene032596.t1 AT5G39150 63.470 219 76 3 1 215 1 219 8.46e-92 268
MS.gene032596.t1 AT5G39180 63.470 219 76 3 1 215 1 219 1.24e-91 268
MS.gene032596.t1 AT5G39110 63.256 215 76 2 4 215 6 220 1.38e-90 266
MS.gene032596.t1 AT5G38940 66.837 196 63 1 22 215 26 221 9.04e-90 263
MS.gene032596.t1 AT5G38940 66.837 196 63 1 22 215 50 245 1.80e-89 264
MS.gene032596.t1 AT5G38930 67.172 198 63 1 20 215 24 221 6.47e-89 261
MS.gene032596.t1 AT5G39130 66.332 199 63 3 20 215 22 219 1.62e-88 260
MS.gene032596.t1 AT5G39160 66.332 199 63 3 20 215 22 219 3.44e-88 259
MS.gene032596.t1 AT3G05950 66.029 209 66 4 11 215 14 221 3.82e-88 259
MS.gene032596.t1 AT5G39190 66.332 199 63 3 20 215 22 219 6.08e-88 259
MS.gene032596.t1 AT5G38910 63.470 219 76 4 1 215 1 219 4.91e-87 256
MS.gene032596.t1 AT5G38960 64.179 201 69 2 18 215 22 222 1.51e-86 255
MS.gene032596.t1 AT4G14630 64.322 199 68 2 20 215 24 222 7.57e-85 251
MS.gene032596.t1 AT5G39160 63.819 199 64 3 20 215 22 215 1.78e-83 247
MS.gene032596.t1 AT3G04200 61.111 216 77 4 3 215 11 222 3.03e-81 242
MS.gene032596.t1 AT3G04150 56.757 222 88 5 1 215 1 221 5.14e-75 226
MS.gene032596.t1 AT5G39190 59.391 197 58 2 20 215 22 197 1.46e-74 224
MS.gene032596.t1 AT5G39160 59.898 197 57 3 20 215 22 197 3.03e-74 223
MS.gene032596.t1 AT3G04190 57.843 204 82 3 15 215 19 221 2.89e-73 221
MS.gene032596.t1 AT3G04150 53.419 234 90 5 1 215 1 234 8.21e-73 221
MS.gene032596.t1 AT3G04180 55.882 204 86 3 15 215 19 221 2.22e-70 214
MS.gene032596.t1 AT3G04170 56.459 209 83 5 11 215 14 218 7.25e-70 213
MS.gene032596.t1 AT5G38910 51.598 219 65 5 1 215 1 182 1.48e-60 188
MS.gene032596.t1 AT1G02335 44.907 216 112 4 2 215 5 215 4.29e-57 180
MS.gene032596.t1 AT3G05930 46.364 220 108 5 1 215 1 215 4.38e-57 180
MS.gene032596.t1 AT1G09560 49.239 197 94 3 22 216 24 216 5.39e-56 177
MS.gene032596.t1 AT3G62020 46.698 212 106 4 7 215 8 215 3.34e-55 176
MS.gene032596.t1 AT5G26700 46.890 209 92 6 11 215 16 209 2.48e-54 173
MS.gene032596.t1 AT1G18970 45.540 213 108 4 7 217 14 220 7.21e-53 169
MS.gene032596.t1 AT1G18980 48.990 198 93 4 22 217 29 220 6.45e-52 167
MS.gene032596.t1 AT1G10460 43.216 199 106 5 22 215 19 215 2.05e-48 158
MS.gene032596.t1 AT3G62020 47.778 180 89 3 39 215 9 186 4.88e-48 156
MS.gene032596.t1 AT3G10080 40.796 201 111 4 19 215 23 219 2.27e-42 143
MS.gene032596.t1 AT3G10080 40.594 202 112 4 18 215 93 290 1.19e-41 143
MS.gene032596.t1 AT5G20630 41.885 191 99 4 1 189 3 183 3.59e-39 134
MS.gene032596.t1 AT5G61750 42.162 185 97 4 5 187 7 183 5.40e-38 131
MS.gene032596.t1 AT1G74820 37.156 218 121 5 8 215 14 225 7.68e-34 121
MS.gene032596.t1 AT1G72610 38.095 189 109 4 26 212 19 201 3.07e-31 114
MS.gene032596.t1 AT5G38950 64.062 64 23 0 144 207 2 65 1.55e-20 83.2
MS.gene032596.t1 AT5G39100 68.000 50 16 0 4 53 6 55 5.24e-17 72.8

Find 46 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATTGCTAATGCTGTATT+TGG 0.057045 6.3:-1446639 MS.gene032596:CDS
CTTGTTTGTGACAGCCTTCT+TGG 0.121595 6.3:-1447659 MS.gene032596:CDS
GTAACCGTTAACGAGATATT+AGG 0.210042 6.3:-1446945 MS.gene032596:CDS
TAGTGATTACACCTGGATTT+TGG 0.253401 6.3:+1446658 None:intergenic
CACCGAAATTCTTATAGTTT+TGG 0.263394 6.3:-1446841 MS.gene032596:CDS
TTCACTTTCAATTGAATGTT+GGG 0.325573 6.3:-1446716 MS.gene032596:CDS
CTCCAAAACTATAAGAATTT+CGG 0.331062 6.3:+1446839 None:intergenic
GGAAATGCTCTCGCCATTGC+TGG 0.341695 6.3:-1446690 MS.gene032596:CDS
AGTATACATACCACCATTCT+TGG 0.356363 6.3:+1447567 None:intergenic
TCATTTGGTGTAGCAAGCTT+TGG 0.358003 6.3:+1447029 None:intergenic
CTCGCGTTGACTTTGCATCT+AGG 0.379629 6.3:-1446896 MS.gene032596:CDS
ATCACAAAAGTACTAAATAA+AGG 0.392770 6.3:-1446768 MS.gene032596:CDS
TAACCGTTAACGAGATATTA+GGG 0.393305 6.3:-1446944 MS.gene032596:CDS
TAACCCTAATATCTCGTTAA+CGG 0.394123 6.3:+1446941 None:intergenic
TGAAAGTGAATGAGACCAAT+TGG 0.411740 6.3:+1446729 None:intergenic
CCACTATGTTATTGTCCACT+TGG 0.415021 6.3:+1446574 None:intergenic
ATTCACTTTCAATTGAATGT+TGG 0.422768 6.3:-1446717 MS.gene032596:CDS
TCGCGTTGACTTTGCATCTA+GGG 0.434930 6.3:-1446895 MS.gene032596:CDS
TTTCAATTGAATGTTGGGTA+TGG 0.435827 6.3:-1446711 MS.gene032596:CDS
ACAAAAGTCTTGTAGAGGGC+TGG 0.457530 6.3:+1447606 None:intergenic
CTATTGCTAATGCTGTATTT+GGG 0.459960 6.3:-1446638 MS.gene032596:CDS
ATAAGAATTTCGGTGGCTCT+AGG 0.464256 6.3:+1446849 None:intergenic
GATGTGTTTGTGTTTCCAAT+TGG 0.465821 6.3:-1446744 MS.gene032596:CDS
ATTGTCCACTTGGAAAGCTT+TGG 0.467417 6.3:+1446584 None:intergenic
CAAAAGTCTTGTAGAGGGCT+GGG 0.476086 6.3:+1447607 None:intergenic
TGGAGGGTACACTTTATGTC+GGG 0.491331 6.3:-1446821 MS.gene032596:CDS
TTGGAGGGTACACTTTATGT+CGG 0.515920 6.3:-1446822 MS.gene032596:CDS
TTGTAGAGGGCTGGGATCAA+AGG 0.523699 6.3:+1447615 None:intergenic
CGCGTTGACTTTGCATCTAG+GGG 0.532914 6.3:-1446894 MS.gene032596:CDS
TAAGAATTTCGGTGGCTCTA+GGG 0.540929 6.3:+1446850 None:intergenic
GGACTTAGCAGCCAAAATCC+AGG 0.549743 6.3:-1446669 MS.gene032596:CDS
GTGGCTCTAGGGTGAGTATG+TGG 0.562834 6.3:+1446861 None:intergenic
ACATGATGCTAAAGCCAAGA+AGG 0.585634 6.3:+1447645 None:intergenic
TTGGCTGCTAAGTCCAGCAA+TGG 0.600072 6.3:+1446677 None:intergenic
ATATTAGGGTTAAACACACT+TGG 0.603049 6.3:-1446930 MS.gene032596:CDS
GCCACACAAAAGTCTTGTAG+AGG 0.603085 6.3:+1447601 None:intergenic
CCAAGTGGACAATAACATAG+TGG 0.613774 6.3:-1446574 MS.gene032596:CDS
GCTCTAGGGTGAGTATGTGG+AGG 0.620396 6.3:+1446864 None:intergenic
TTAGCAATAGTGATTACACC+TGG 0.624375 6.3:+1446651 None:intergenic
ATCAATGACACCAAGAATGG+TGG 0.627435 6.3:-1447577 MS.gene032596:intron
GCTATCAATGACACCAAGAA+TGG 0.633041 6.3:-1447580 MS.gene032596:CDS
CAAAACTATAAGAATTTCGG+TGG 0.640429 6.3:+1446842 None:intergenic
AGGGCTGGGATCAAAGGCAA+AGG 0.641928 6.3:+1447621 None:intergenic
CCACACAAAAGTCTTGTAGA+GGG 0.655758 6.3:+1447602 None:intergenic
GGAAACACGTCAAATCCACT+TGG 0.662851 6.3:-1446984 MS.gene032596:CDS
TCTCACCAAAGCTTTCCAAG+TGG 0.665947 6.3:-1446589 MS.gene032596:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATATATATATATATAT+GGG + chr6.3:1447088-1447107 None:intergenic 0.0%
!! ATATATATATATACATATAG+GGG - chr6.3:1446768-1446787 MS.gene032596:CDS 10.0%
!! AAAGAAATCATTAAAAGATA+TGG + chr6.3:1446680-1446699 None:intergenic 15.0%
!!! TTTATTTACTTTTAGTTTTC+TGG - chr6.3:1446697-1446716 MS.gene032596:CDS 15.0%
!!! ACAATCTTCAAAAACAATTT+TGG - chr6.3:1447658-1447677 MS.gene032596:CDS 20.0%
!!! ATCACAAAAGTACTAAATAA+AGG - chr6.3:1447441-1447460 MS.gene032596:intron 20.0%
!!! CAATCTTCAAAAACAATTTT+GGG - chr6.3:1447659-1447678 MS.gene032596:CDS 20.0%
! ACTGAGAAAAAGAAATCATT+TGG + chr6.3:1447198-1447217 None:intergenic 25.0%
! ATATATACATATAGGGGTTT+GGG - chr6.3:1446774-1446793 MS.gene032596:CDS 25.0%
! ATTCACTTTCAATTGAATGT+TGG - chr6.3:1447492-1447511 MS.gene032596:intron 25.0%
! CTCCAAAACTATAAGAATTT+CGG + chr6.3:1447373-1447392 None:intergenic 25.0%
! GCAAGTAAATAACTAAAAAG+TGG - chr6.3:1446841-1446860 MS.gene032596:CDS 25.0%
! TATATATACATATAGGGGTT+TGG - chr6.3:1446773-1446792 MS.gene032596:CDS 25.0%
! TTCACTTTCAATTGAATGTT+GGG - chr6.3:1447493-1447512 MS.gene032596:intron 25.0%
!! TTCTTTTTCTCAGTTAAAGA+AGG - chr6.3:1447204-1447223 MS.gene032596:intron 25.0%
!!! AGAACTTCTGAAGAAATTTT+TGG + chr6.3:1447603-1447622 None:intergenic 25.0%
!!! GAAATTCTTATAGTTTTGGA+GGG - chr6.3:1447372-1447391 MS.gene032596:intron 25.0%
ACCTTCTAACAATAACAAGT+GGG - chr6.3:1446899-1446918 MS.gene032596:CDS 30.0%
ACTATTGCTAATGCTGTATT+TGG - chr6.3:1447570-1447589 MS.gene032596:intron 30.0%
ACTCCCACATAAAAATTAGT+GGG - chr6.3:1447047-1447066 MS.gene032596:CDS 30.0%
ATATTAGGGTTAAACACACT+TGG - chr6.3:1447279-1447298 MS.gene032596:intron 30.0%
CAAAACTATAAGAATTTCGG+TGG + chr6.3:1447370-1447389 None:intergenic 30.0%
CTATTGCTAATGCTGTATTT+GGG - chr6.3:1447571-1447590 MS.gene032596:intron 30.0%
TAACCCTAATATCTCGTTAA+CGG + chr6.3:1447271-1447290 None:intergenic 30.0%
TAACCGTTAACGAGATATTA+GGG - chr6.3:1447265-1447284 MS.gene032596:intron 30.0%
TATATACATATAGGGGTTTG+GGG - chr6.3:1446775-1446794 MS.gene032596:CDS 30.0%
TTATAGCAACATACACCTTA+GGG + chr6.3:1446876-1446895 None:intergenic 30.0%
TTTCAATTGAATGTTGGGTA+TGG - chr6.3:1447498-1447517 MS.gene032596:intron 30.0%
! ACACCCACTAATTTTTATGT+GGG + chr6.3:1447053-1447072 None:intergenic 30.0%
! CACCGAAATTCTTATAGTTT+TGG - chr6.3:1447368-1447387 MS.gene032596:intron 30.0%
! TCTTCAAAAACAATTTTGGG+TGG - chr6.3:1447662-1447681 MS.gene032596:CDS 30.0%
! TGTGAATGGAAAATTTTGCA+AGG - chr6.3:1447155-1447174 MS.gene032596:intron 30.0%
! TGTTTTGCAGTATTTGTGAA+TGG - chr6.3:1447141-1447160 MS.gene032596:intron 30.0%
! TTAGTACTTTTGTGATGAGA+CGG + chr6.3:1447437-1447456 None:intergenic 30.0%
!!! CGAAATTCTTATAGTTTTGG+AGG - chr6.3:1447371-1447390 MS.gene032596:intron 30.0%
AAGTGGTTAAATACACCCTA+AGG - chr6.3:1446858-1446877 MS.gene032596:CDS 35.0%
AAGTGGTTAATTACACCCTA+AGG - chr6.3:1447007-1447026 MS.gene032596:CDS 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr6.3:1446964-1446983 None:intergenic 35.0%
AGTATACATACCACCATTCT+TGG + chr6.3:1446645-1446664 None:intergenic 35.0%
CACCTTCTAACAATAACAAG+TGG - chr6.3:1446898-1446917 MS.gene032596:CDS 35.0%
CACTCCCACATAAAAATTAG+TGG - chr6.3:1447046-1447065 MS.gene032596:CDS 35.0%
GATGTGTTTGTGTTTCCAAT+TGG - chr6.3:1447465-1447484 MS.gene032596:intron 35.0%
GTAACCGTTAACGAGATATT+AGG - chr6.3:1447264-1447283 MS.gene032596:intron 35.0%
GTTATAGCAACATACACCTT+AGG + chr6.3:1446877-1446896 None:intergenic 35.0%
TGAAAGTGAATGAGACCAAT+TGG + chr6.3:1447483-1447502 None:intergenic 35.0%
TGTGTTCTAGCAAATCCTAT+AGG - chr6.3:1446922-1446941 MS.gene032596:CDS 35.0%
TTAGCAATAGTGATTACACC+TGG + chr6.3:1447561-1447580 None:intergenic 35.0%
TTTAGCAAAGCTACACCTTA+GGG + chr6.3:1447025-1447044 None:intergenic 35.0%
! CACACCCACTAATTTTTATG+TGG + chr6.3:1447054-1447073 None:intergenic 35.0%
! TAGTGATTACACCTGGATTT+TGG + chr6.3:1447554-1447573 None:intergenic 35.0%
! TTTTAGCAAAGCTACACCTT+AGG + chr6.3:1447026-1447045 None:intergenic 35.0%
!! ACCCACTTGTTATTGTTAGA+AGG + chr6.3:1446903-1446922 None:intergenic 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr6.3:1446958-1446977 MS.gene032596:CDS 35.0%
ACATGATGCTAAAGCCAAGA+AGG + chr6.3:1446567-1446586 None:intergenic 40.0%
ACTCCCACGTAAAAACTAGT+GGG + chr6.3:1446815-1446834 None:intergenic 40.0%
ATAAGAATTTCGGTGGCTCT+AGG + chr6.3:1447363-1447382 None:intergenic 40.0%
ATCAATGACACCAAGAATGG+TGG - chr6.3:1446632-1446651 MS.gene032596:CDS 40.0%
ATTGTCCACTTGGAAAGCTT+TGG + chr6.3:1447628-1447647 None:intergenic 40.0%
CACTCCCACATAAAAACTAG+TGG + chr6.3:1446965-1446984 None:intergenic 40.0%
CCAAGTGGACAATAACATAG+TGG - chr6.3:1447635-1447654 MS.gene032596:CDS 40.0%
CCACTATGTTATTGTCCACT+TGG + chr6.3:1447638-1447657 None:intergenic 40.0%
GCTATCAATGACACCAAGAA+TGG - chr6.3:1446629-1446648 MS.gene032596:CDS 40.0%
GTGTTCTAGCAAATGCCTAT+AGG + chr6.3:1446940-1446959 None:intergenic 40.0%
! CCACACAAAAGTCTTGTAGA+GGG + chr6.3:1446610-1446629 None:intergenic 40.0%
! TAAGAATTTCGGTGGCTCTA+GGG + chr6.3:1447362-1447381 None:intergenic 40.0%
! TTGGAGGGTACACTTTATGT+CGG - chr6.3:1447387-1447406 MS.gene032596:intron 40.0%
! TTTGTGATGAGACGGTTTTC+TGG + chr6.3:1447429-1447448 None:intergenic 40.0%
!! TCATTTGGTGTAGCAAGCTT+TGG + chr6.3:1447183-1447202 None:intergenic 40.0%
!!! ACACCCACTAGTTTTTACGT+GGG - chr6.3:1446809-1446828 MS.gene032596:CDS 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr6.3:1446957-1446976 MS.gene032596:CDS 40.0%
!!! TGTGTCACTTTTGAACCAAG+TGG + chr6.3:1447243-1447262 None:intergenic 40.0%
CACTCCCACGTAAAAACTAG+TGG + chr6.3:1446816-1446835 None:intergenic 45.0%
CTTGTTTGTGACAGCCTTCT+TGG - chr6.3:1446550-1446569 MS.gene032596:CDS 45.0%
GGAAACACGTCAAATCCACT+TGG - chr6.3:1447225-1447244 MS.gene032596:intron 45.0%
TCTCACCAAAGCTTTCCAAG+TGG - chr6.3:1447620-1447639 MS.gene032596:CDS 45.0%
! ACAAAAGTCTTGTAGAGGGC+TGG + chr6.3:1446606-1446625 None:intergenic 45.0%
! CAAAAGTCTTGTAGAGGGCT+GGG + chr6.3:1446605-1446624 None:intergenic 45.0%
! CCCTCTACAAGACTTTTGTG+TGG - chr6.3:1446607-1446626 MS.gene032596:CDS 45.0%
! GCCACACAAAAGTCTTGTAG+AGG + chr6.3:1446611-1446630 None:intergenic 45.0%
! TGGAGGGTACACTTTATGTC+GGG - chr6.3:1447388-1447407 MS.gene032596:intron 45.0%
!! TCGCGTTGACTTTGCATCTA+GGG - chr6.3:1447314-1447333 MS.gene032596:intron 45.0%
!!! CACACCCACTAGTTTTTACG+TGG - chr6.3:1446808-1446827 MS.gene032596:CDS 45.0%
!! ATATATATATATATACATAT+AGG - chr6.3:1446766-1446785 MS.gene032596:CDS 5.0%
!! CTTATATATATATATATATA+TGG + chr6.3:1447089-1447108 None:intergenic 5.0%
!! TATATATATATATACATATA+GGG - chr6.3:1446767-1446786 MS.gene032596:CDS 5.0%
!! TATATATATATATATATATG+GGG + chr6.3:1447087-1447106 None:intergenic 5.0%
GGACTTAGCAGCCAAAATCC+AGG - chr6.3:1447540-1447559 MS.gene032596:intron 50.0%
TTGGCTGCTAAGTCCAGCAA+TGG + chr6.3:1447535-1447554 None:intergenic 50.0%
TTGTAGAGGGCTGGGATCAA+AGG + chr6.3:1446597-1446616 None:intergenic 50.0%
!! CGCGTTGACTTTGCATCTAG+GGG - chr6.3:1447315-1447334 MS.gene032596:intron 50.0%
!! CTCGCGTTGACTTTGCATCT+AGG - chr6.3:1447313-1447332 MS.gene032596:intron 50.0%
AGGGCTGGGATCAAAGGCAA+AGG + chr6.3:1446591-1446610 None:intergenic 55.0%
GGAAATGCTCTCGCCATTGC+TGG - chr6.3:1447519-1447538 MS.gene032596:intron 55.0%
!! GCTCTAGGGTGAGTATGTGG+AGG + chr6.3:1447348-1447367 None:intergenic 55.0%
!! GTGGCTCTAGGGTGAGTATG+TGG + chr6.3:1447351-1447370 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 1446536 1447695 1446536 ID=MS.gene032596
chr6.3 mRNA 1446536 1447695 1446536 ID=MS.gene032596.t1;Parent=MS.gene032596
chr6.3 exon 1447578 1447695 1447578 ID=MS.gene032596.t1.exon1;Parent=MS.gene032596.t1
chr6.3 CDS 1447578 1447695 1447578 ID=cds.MS.gene032596.t1;Parent=MS.gene032596.t1
chr6.3 exon 1446536 1447080 1446536 ID=MS.gene032596.t1.exon2;Parent=MS.gene032596.t1
chr6.3 CDS 1446536 1447080 1446536 ID=cds.MS.gene032596.t1;Parent=MS.gene032596.t1
Gene Sequence

>MS.gene032596

ATGAAGACTTCAATCTTGTTTGTGACAGCCTTCTTGGCTTTAGCATCATGTGCCTTTGCCTTTGATCCCAGCCCTCTACAAGACTTTTGTGTGGCTATCAATGACACCAAGAATGGTGGTATGTATACTCTTTTAAATTAACCATATCTTTTAATGATTTCTTTATTTACTTTTAGTTTTCTGGTTCAACTTGTTGAGTCAATTGAAACTATGATCTAGAAATCTCATTGATATATATATATATACATATAGGGGTTTGGGGTTTGCTAGAACACACCCACTAGTTTTTACGTGGGAGTGTTTTAGCAAGTAAATAACTAAAAAGTGGTTAAATACACCCTAAGGTGTATGTTGCTATAACACACCTTCTAACAATAACAAGTGGGTGTGTTCTAGCAAATCCTATAGGCATTTGCTAGAACACACCCACTAGTTTTTATGTGGGAGTGTTTTAGCAAGTAAATAACTAAAAAGTGGTTAATTACACCCTAAGGTGTAGCTTTGCTAAAACACTCCCACATAAAAATTAGTGGGTGTGTTCTAGCAAACCCCATATATATATATATATATAAGAGTAGTATATGATTTAATTTTTCTAATGAATTTGTTTTGCAGTATTTGTGAATGGAAAATTTTGCAAGGATCCAAAGCTTGCTACACCAAATGATTTCTTTTTCTCAGTTAAAGAAGGAAACACGTCAAATCCACTTGGTTCAAAAGTGACACAAGTAACCGTTAACGAGATATTAGGGTTAAACACACTTGGTATCTCTCTTGCTCGCGTTGACTTTGCATCTAGGGGACTAAATCCTCCACATACTCACCCTAGAGCCACCGAAATTCTTATAGTTTTGGAGGGTACACTTTATGTCGGGTTTGTTACTTCTAATCCAGAAAACCGTCTCATCACAAAAGTACTAAATAAAGGAGATGTGTTTGTGTTTCCAATTGGTCTCATTCACTTTCAATTGAATGTTGGGTATGGAAATGCTCTCGCCATTGCTGGACTTAGCAGCCAAAATCCAGGTGTAATCACTATTGCTAATGCTGTATTTGGGTCTAATCCAAAAATTTCTTCAGAAGTTCTCACCAAAGCTTTCCAAGTGGACAATAACATAGTGGACAATCTTCAAAAACAATTTTGGGTGGACAACAACTAG
Protein sequence

>MS.gene032596.t1

MKTSILFVTAFLALASCAFAFDPSPLQDFCVAINDTKNGVFVNGKFCKDPKLATPNDFFFSVKEGNTSNPLGSKVTQVTVNEILGLNTLGISLARVDFASRGLNPPHTHPRATEILIVLEGTLYVGFVTSNPENRLITKVLNKGDVFVFPIGLIHFQLNVGYGNALAIAGLSSQNPGVITIANAVFGSNPKISSEVLTKAFQVDNNIVDNLQKQFWVDNN