AlfalfaGEDB | MS.gene82860

M. sativa cultivar XinJiangDaYe / MS.gene82860

KEGG: -
GO: GO:0003674 GO:0005488 GO:0030145 GO:0043167 GO:0043169 GO:0045735 GO:0046872 GO:0046914
PFAM: PF00190.25

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82860.t1	XP_003618167.1	96.8	220	7	0	1	220	1	220	2.50E-117	431.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82860.t1	Q9FIC9	64.3	213	73	2	6	215	7	219	4.0e-71	269.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82860.t1	G7KQ20	96.8	220	7	0	1	220	1	220	1.8e-117	431.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049549	MS.gene82860	0.807934	3.96E-50	-1.69E-46
MS.gene050647	MS.gene82860	0.808325	3.27E-50	-1.69E-46
MS.gene05104	MS.gene82860	0.809618	1.73E-50	-1.69E-46
MS.gene051138	MS.gene82860	0.810361	1.20E-50	-1.69E-46
MS.gene05240	MS.gene82860	0.801193	1.01E-48	-1.69E-46
MS.gene053027	MS.gene82860	0.811631	6.36E-51	-1.69E-46
MS.gene053030	MS.gene82860	0.870028	1.99E-66	-1.69E-46
MS.gene053031	MS.gene82860	0.860199	2.44E-63	-1.69E-46
MS.gene053033	MS.gene82860	0.845105	5.00E-59	-1.69E-46
MS.gene053406	MS.gene82860	0.802946	4.41E-49	-1.69E-46
MS.gene054181	MS.gene82860	0.808247	3.40E-50	-1.69E-46
MS.gene054742	MS.gene82860	0.800432	1.45E-48	-1.69E-46
MS.gene05483	MS.gene82860	0.806505	7.96E-50	-1.69E-46
MS.gene055240	MS.gene82860	0.801829	7.49E-49	-1.69E-46
MS.gene056856	MS.gene82860	0.803329	3.67E-49	-1.69E-46
MS.gene059402	MS.gene82860	0.802974	4.35E-49	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene053029	MS.gene82860	PPI
MS.gene053030	MS.gene82860	PPI
MS.gene70063	MS.gene82860	PPI
MS.gene053033	MS.gene82860	PPI
MS.gene053027	MS.gene82860	PPI
MS.gene50787	MS.gene82860	PPI
MS.gene82860	MS.gene053031	PPI
MS.gene032599	MS.gene82860	PPI
MS.gene82860	MS.gene50789	PPI
MS.gene50786	MS.gene82860	PPI
MS.gene82860	MS.gene50788	PPI
MS.gene82860	MS.gene037520	PPI
MS.gene032601	MS.gene82860	PPI
MS.gene053026	MS.gene82860	PPI
MS.gene032597	MS.gene82860	PPI
MS.gene96244	MS.gene82860	PPI
MS.gene82860	MS.gene82855	PPI
MS.gene82860	MS.gene70061	PPI
MS.gene89775	MS.gene82860	PPI
MS.gene82858	MS.gene82860	PPI
MS.gene82860	MS.gene037518	PPI
MS.gene037517	MS.gene82860	PPI
MS.gene82860	MS.gene037519	PPI
MS.gene82860	MS.gene047464	PPI
MS.gene50788	MS.gene82860	PPI
MS.gene005041	MS.gene82860	PPI
MS.gene82860	MS.gene82857	PPI
MS.gene037516	MS.gene82860	PPI
MS.gene50790	MS.gene82860	PPI
MS.gene032598	MS.gene82860	PPI
MS.gene89773	MS.gene82860	PPI
MS.gene004411	MS.gene82860	PPI
MS.gene002728	MS.gene82860	PPI
MS.gene032596	MS.gene82860	PPI
MS.gene82860	MS.gene005041	PPI
MS.gene70064	MS.gene82860	PPI
MS.gene74887	MS.gene82860	PPI
MS.gene89772	MS.gene82860	PPI
MS.gene82860	MS.gene82859	PPI
MS.gene70062	MS.gene82860	PPI
MS.gene89774	MS.gene82860	PPI
MS.gene82860	MS.gene07591	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82860.t1	MTR_6g005360	96.818	220	7	0	1	220	1	220	3.77e-156	431
MS.gene82860.t1	MTR_6g005310	96.347	219	8	0	1	219	1	219	1.05e-154	427
MS.gene82860.t1	MTR_6g005340	95.909	220	9	0	1	220	1	220	1.87e-154	427
MS.gene82860.t1	MTR_6g005330	95.000	220	11	0	1	220	1	220	2.52e-153	424
MS.gene82860.t1	MTR_1g079490	80.822	219	39	3	5	220	4	222	1.20e-123	349
MS.gene82860.t1	MTR_4g017040	76.018	221	52	1	1	220	1	221	4.43e-119	338
MS.gene82860.t1	MTR_2g019250	75.113	221	54	1	1	220	1	221	4.33e-118	335
MS.gene82860.t1	MTR_4g017050	75.113	221	54	1	1	220	1	221	4.73e-118	335
MS.gene82860.t1	MTR_5g046410	75.113	221	54	1	1	220	1	221	5.88e-118	335
MS.gene82860.t1	MTR_5g046430	75.113	221	54	1	1	220	1	221	5.88e-118	335
MS.gene82860.t1	MTR_4g017030	75.113	221	54	1	1	220	1	221	5.88e-118	335
MS.gene82860.t1	MTR_6g005350	73.636	220	57	1	1	220	1	219	3.78e-112	320
MS.gene82860.t1	MTR_6g005380	70.673	208	60	1	1	207	1	208	6.00e-102	294
MS.gene82860.t1	MTR_1g023770	63.131	198	63	2	20	215	20	209	3.93e-83	246
MS.gene82860.t1	MTR_2g030855	62.814	199	67	2	19	215	19	212	1.03e-82	245
MS.gene82860.t1	MTR_2g031270	63.542	192	63	2	26	215	27	213	2.32e-80	239
MS.gene82860.t1	MTR_2g030895	65.698	172	56	2	47	215	7	178	7.42e-76	226
MS.gene82860.t1	MTR_2g030865	65.698	172	56	2	47	215	7	178	2.20e-74	223
MS.gene82860.t1	MTR_2g031300	60.625	160	41	2	47	204	7	146	5.00e-59	183
MS.gene82860.t1	MTR_1g085500	47.059	204	98	4	17	214	14	213	2.35e-57	181
MS.gene82860.t1	MTR_7g111240	50.000	196	92	3	22	215	20	211	2.96e-54	173
MS.gene82860.t1	MTR_1g085140	47.449	196	97	3	22	215	24	215	8.39e-53	169
MS.gene82860.t1	MTR_5g036570	48.731	197	94	4	22	215	27	219	1.73e-52	169
MS.gene82860.t1	MTR_7g111240	49.490	196	90	3	22	215	20	208	9.03e-52	166
MS.gene82860.t1	MTR_1g112200	43.519	216	107	6	2	215	5	207	9.79e-47	154
MS.gene82860.t1	MTR_1g060120	38.914	221	124	5	2	215	5	221	2.76e-43	145
MS.gene82860.t1	MTR_2g041550	43.878	196	102	4	19	212	14	203	1.05e-42	143
MS.gene82860.t1	MTR_8g020750	45.699	186	83	6	11	189	10	184	3.87e-40	137
MS.gene82860.t1	MTR_2g041580	39.713	209	116	5	6	212	3	203	4.53e-38	131
MS.gene82860.t1	MTR_2g041570	39.524	210	117	5	6	213	3	204	5.99e-38	131
MS.gene82860.t1	MTR_8g020590	39.109	202	115	4	14	213	7	202	2.79e-35	124
MS.gene82860.t1	MTR_3g019680	38.389	211	116	5	6	215	7	204	9.84e-34	120
MS.gene82860.t1	MTR_3g019710	37.915	211	118	5	6	215	7	205	4.43e-33	119
MS.gene82860.t1	MTR_8g020630	39.683	189	106	4	28	215	24	205	5.92e-33	118
MS.gene82860.t1	MTR_8g007300	36.321	212	123	6	6	208	8	216	6.07e-33	118
MS.gene82860.t1	MTR_8g020650	40.212	189	105	4	28	215	24	205	1.29e-32	117
MS.gene82860.t1	MTR_3g019650	37.441	211	118	5	6	215	7	204	8.86e-32	115
MS.gene82860.t1	MTR_2g045100	37.915	211	118	5	6	215	7	205	3.11e-31	114
MS.gene82860.t1	MTR_4g010340	37.963	216	118	7	1	215	1	201	9.30e-31	112
MS.gene82860.t1	MTR_2g036120	38.220	191	110	4	26	215	22	205	6.96e-30	110
MS.gene82860.t1	MTR_8g020670	36.408	206	121	5	11	215	9	205	9.00e-30	110
MS.gene82860.t1	MTR_8g020770	36.652	221	119	6	1	215	3	208	2.11e-29	109
MS.gene82860.t1	MTR_8g020610	39.474	190	105	6	28	215	22	203	2.36e-29	108
MS.gene82860.t1	MTR_2g086620	36.493	211	104	7	12	215	17	204	8.64e-29	107
MS.gene82860.t1	MTR_2g086630	36.493	211	104	7	12	215	17	204	9.61e-29	107
MS.gene82860.t1	MTR_8g020760	35.071	211	129	4	6	215	4	207	4.52e-28	105
MS.gene82860.t1	MTR_2g044040	37.173	191	112	4	26	215	22	205	4.69e-28	105
MS.gene82860.t1	MTR_2g019780	35.023	217	130	6	1	215	1	208	1.57e-27	104
MS.gene82860.t1	MTR_2g086640	35.610	205	114	5	12	215	16	203	1.95e-27	103
MS.gene82860.t1	MTR_3g096330	32.227	211	138	4	3	211	557	764	4.01e-27	108
MS.gene82860.t1	MTR_4g052770	40.559	143	80	3	74	215	67	205	6.12e-27	102
MS.gene82860.t1	MTR_4g052780	40.559	143	80	3	74	215	67	205	8.33e-27	102
MS.gene82860.t1	MTR_0284s0010	36.649	191	113	4	26	215	22	205	1.04e-26	102
MS.gene82860.t1	MTR_5g031460	35.233	193	117	4	24	215	20	205	1.78e-26	101
MS.gene82860.t1	MTR_7g011340	36.649	191	113	4	26	215	22	205	2.00e-26	101
MS.gene82860.t1	MTR_8g020763	35.429	175	106	3	43	215	17	186	3.12e-26	100
MS.gene82860.t1	MTR_3g073170	36.111	216	127	6	1	215	1	206	6.17e-26	100
MS.gene82860.t1	MTR_2g030915	53.333	75	21	1	93	167	1	61	1.23e-19	80.5
MS.gene82860.t1	MTR_4g027415	39.683	126	70	3	26	150	22	142	8.34e-16	72.0
MS.gene82860.t1	MTR_3g019810	31.937	191	114	7	24	212	126	302	1.70e-15	73.9
MS.gene82860.t1	MTR_2g072560	37.190	121	69	4	1	120	1	115	1.42e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82860.t1	AT5G39120	64.319	213	73	2	6	215	7	219	5.52e-92	269
MS.gene82860.t1	AT5G39150	63.014	219	77	3	1	215	1	219	1.06e-90	266
MS.gene82860.t1	AT5G39180	63.014	219	77	3	1	215	1	219	1.55e-90	265
MS.gene82860.t1	AT5G38940	66.837	196	63	1	22	215	26	221	2.88e-89	262
MS.gene82860.t1	AT5G39110	62.791	215	77	2	4	215	6	220	2.97e-89	262
MS.gene82860.t1	AT5G38940	66.837	196	63	1	22	215	50	245	4.98e-89	263
MS.gene82860.t1	AT5G38930	66.834	199	64	1	19	215	23	221	1.25e-88	261
MS.gene82860.t1	AT5G39130	63.981	211	68	4	12	215	10	219	6.86e-88	259
MS.gene82860.t1	AT5G39160	66.332	199	63	3	20	215	22	219	1.43e-87	258
MS.gene82860.t1	AT5G39190	63.981	211	68	4	12	215	10	219	2.16e-87	258
MS.gene82860.t1	AT3G05950	65.550	209	67	4	11	215	14	221	6.13e-87	256
MS.gene82860.t1	AT5G38960	64.179	201	69	2	18	215	22	222	2.42e-86	255
MS.gene82860.t1	AT5G38910	62.557	219	78	4	1	215	1	219	3.83e-86	254
MS.gene82860.t1	AT4G14630	61.111	216	80	3	4	215	7	222	1.85e-85	253
MS.gene82860.t1	AT5G39160	63.819	199	64	3	20	215	22	215	9.07e-83	246
MS.gene82860.t1	AT3G04200	62.500	216	74	4	6	215	8	222	1.96e-80	240
MS.gene82860.t1	AT5G39190	57.416	209	63	3	12	215	10	197	7.59e-74	222
MS.gene82860.t1	AT5G39160	57.895	209	62	4	12	215	10	197	1.53e-73	221
MS.gene82860.t1	AT3G04150	56.306	222	89	5	1	215	1	221	3.01e-73	222
MS.gene82860.t1	AT3G04190	57.843	204	82	3	15	215	19	221	3.19e-72	219
MS.gene82860.t1	AT3G04150	52.991	234	91	5	1	215	1	234	4.58e-71	217
MS.gene82860.t1	AT3G04170	55.093	216	89	5	4	215	7	218	1.28e-70	215
MS.gene82860.t1	AT3G04180	55.882	204	86	3	15	215	19	221	2.67e-69	211
MS.gene82860.t1	AT5G38910	50.685	219	67	5	1	215	1	182	1.22e-59	186
MS.gene82860.t1	AT1G02335	47.475	198	98	3	20	215	22	215	1.51e-56	179
MS.gene82860.t1	AT3G05930	46.479	213	106	4	6	215	8	215	7.55e-56	177
MS.gene82860.t1	AT1G09560	49.239	197	94	3	22	216	24	216	2.52e-55	176
MS.gene82860.t1	AT3G62020	47.867	211	100	5	11	215	9	215	4.24e-55	175
MS.gene82860.t1	AT1G18970	46.296	216	106	5	4	217	13	220	1.88e-54	174
MS.gene82860.t1	AT1G18980	47.685	216	103	5	4	217	13	220	2.38e-54	173
MS.gene82860.t1	AT5G26700	46.890	209	92	6	11	215	16	209	6.51e-54	172
MS.gene82860.t1	AT3G62020	47.778	180	89	3	39	215	9	186	1.49e-47	155
MS.gene82860.t1	AT1G10460	42.714	199	107	5	22	215	19	215	2.08e-47	155
MS.gene82860.t1	AT3G10080	41.791	201	109	4	19	215	23	219	2.01e-44	148
MS.gene82860.t1	AT3G10080	41.584	202	110	4	18	215	93	290	8.35e-44	149
MS.gene82860.t1	AT5G20630	45.783	166	84	3	26	189	22	183	4.30e-40	137
MS.gene82860.t1	AT5G61750	41.304	184	103	3	6	187	3	183	5.82e-37	129
MS.gene82860.t1	AT1G74820	38.384	198	114	4	20	215	34	225	1.43e-34	123
MS.gene82860.t1	AT1G72610	38.624	189	108	4	26	212	19	201	2.16e-32	117
MS.gene82860.t1	AT5G38950	64.062	64	23	0	144	207	2	65	1.90e-20	83.2
MS.gene82860.t1	AT5G39100	66.000	50	17	0	4	53	6	55	3.23e-16	70.5

Find 46 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTATTGCTAATGCTGTATT+TGG	0.059840	6.1:-1304503	MS.gene82860:CDS
TAGTGATAACACCTGGATTT+TGG	0.245631	6.1:+1304522	None:intergenic
TTCACTTTCAATTGAATGTT+GGG	0.325573	6.1:-1304580	MS.gene82860:CDS
AGCATACATACCACCATTCT+TGG	0.326838	6.1:+1305102	None:intergenic
GGAAATGCTCTCGCCATTGC+TGG	0.341695	6.1:-1304554	MS.gene82860:CDS
TCATTTGGTGTAGCAAGCTT+TGG	0.358003	6.1:+1304893	None:intergenic
CTCGTGTTGACTTTGCATCT+AGG	0.405287	6.1:-1304760	MS.gene82860:CDS
TGAAAGTGAATGAGACCAAT+TGG	0.411740	6.1:+1304593	None:intergenic
CCACTATGTTATTGTCCACT+TGG	0.415021	6.1:+1304438	None:intergenic
ATTCACTTTCAATTGAATGT+TGG	0.422768	6.1:-1304581	MS.gene82860:CDS
TCGTGTTGACTTTGCATCTA+GGG	0.430505	6.1:-1304759	MS.gene82860:CDS
TTTCAATTGAATGTTGGGTA+TGG	0.435827	6.1:-1304575	MS.gene82860:CDS
ACAAAAGTCTTGTAGAGGGC+TGG	0.457530	6.1:+1305141	None:intergenic
CTATTGCTAATGCTGTATTT+GGG	0.459960	6.1:-1304502	MS.gene82860:CDS
GATGTGTTTGTGTTTCCAAT+TGG	0.465821	6.1:-1304608	MS.gene82860:CDS
ATTGTCCACTTGGAAAGCTT+TGG	0.467417	6.1:+1304448	None:intergenic
ATAAGAATCTCAGTGGCTCT+AGG	0.470121	6.1:+1304713	None:intergenic
CAAAAGTCTTGTAGAGGGCT+GGG	0.476086	6.1:+1305142	None:intergenic
AGTATCTCATTAACCGCTAC+TGG	0.477685	6.1:+1304812	None:intergenic
TGAGATTCTTATCGTGTTGG+AGG	0.479548	6.1:-1304702	MS.gene82860:CDS
TTGTAGAGGGCTGGGATCAA+AGG	0.521527	6.1:+1305150	None:intergenic
GGCTAAGGCACATGATGCTA+AGG	0.530501	6.1:+1305171	None:intergenic
ACATGATGCTAAGGCAAAGA+AGG	0.540615	6.1:+1305180	None:intergenic
CACTGAGATTCTTATCGTGT+TGG	0.542092	6.1:-1304705	MS.gene82860:CDS
GTGGCTCTAGGGTGAGTATG+TGG	0.548107	6.1:+1304725	None:intergenic
TAAGAATCTCAGTGGCTCTA+GGG	0.548530	6.1:+1304714	None:intergenic
GGACTTAGCAGCCAAAATCC+AGG	0.549743	6.1:-1304533	MS.gene82860:CDS
GTAGCGGTTAATGAGATACT+AGG	0.561671	6.1:-1304809	MS.gene82860:CDS
ATACTAGGACTAAACACTCT+AGG	0.572011	6.1:-1304794	MS.gene82860:CDS
CGTGTTGACTTTGCATCTAG+GGG	0.592403	6.1:-1304758	MS.gene82860:CDS
TTGGAGGGTACTCTATATGT+CGG	0.592575	6.1:-1304686	MS.gene82860:CDS
TTGGCTGCTAAGTCCAGCAA+TGG	0.600072	6.1:+1304541	None:intergenic
AGGGCTGGGATCAAAGGCTA+AGG	0.602904	6.1:+1305156	None:intergenic
GCCACACAAAAGTCTTGTAG+AGG	0.603085	6.1:+1305136	None:intergenic
GAGATTCTTATCGTGTTGGA+GGG	0.612927	6.1:-1304701	MS.gene82860:CDS
CCAAGTGGACAATAACATAG+TGG	0.613774	6.1:-1304438	MS.gene82860:CDS
ATCAATGACACCAAGAATGG+TGG	0.627435	6.1:-1305112	MS.gene82860:intron
GCTATCAATGACACCAAGAA+TGG	0.633041	6.1:-1305115	MS.gene82860:CDS
ATCACAAAAGTACTCAACAA+AGG	0.644517	6.1:-1304632	MS.gene82860:CDS
TTCAAAAGTGACACCAGTAG+CGG	0.645045	6.1:-1304825	MS.gene82860:CDS
TTAGCAATAGTGATAACACC+TGG	0.654937	6.1:+1304515	None:intergenic
CCACACAAAAGTCTTGTAGA+GGG	0.655758	6.1:+1305137	None:intergenic
GGAAACACATCAAATCCACT+TGG	0.655822	6.1:-1304848	MS.gene82860:CDS
TCTCACCAAAGCTTTCCAAG+TGG	0.665947	6.1:-1304453	MS.gene82860:CDS
GCTCTAGGGTGAGTATGTGG+AGG	0.673911	6.1:+1304728	None:intergenic
CAACACGATAAGAATCTCAG+TGG	0.757588	6.1:+1304706	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TCTTTTAAATTAACAATATT+TGG	-	chr6.1:1304528-1304547	MS.gene82860:CDS	10.0%
!!!	TTTATTTATTTTTAGTTTTC+TGG	-	chr6.1:1304562-1304581	MS.gene82860:CDS	10.0%
!!!	ACAATCTTCAAAAACAATTT+TGG	-	chr6.1:1305193-1305212	MS.gene82860:CDS	20.0%
!!!	CAATCTTCAAAAACAATTTT+GGG	-	chr6.1:1305194-1305213	MS.gene82860:CDS	20.0%
!	ATTCACTTTCAATTGAATGT+TGG	-	chr6.1:1305027-1305046	MS.gene82860:intron	25.0%
!	TTCACTTTCAATTGAATGTT+GGG	-	chr6.1:1305028-1305047	MS.gene82860:intron	25.0%
!!	ACCAAATGATTTCTTTTTCT+CGG	-	chr6.1:1304729-1304748	MS.gene82860:CDS	25.0%
!!!	AGAACTTCTGAAGAAATTTT+TGG	+	chr6.1:1305138-1305157	None:intergenic	25.0%
	ACCGAGAAAAAGAAATCATT+TGG	+	chr6.1:1304733-1304752	None:intergenic	30.0%
	ACTATTGCTAATGCTGTATT+TGG	-	chr6.1:1305105-1305124	MS.gene82860:intron	30.0%
	CTATTGCTAATGCTGTATTT+GGG	-	chr6.1:1305106-1305125	MS.gene82860:intron	30.0%
	TTTCAATTGAATGTTGGGTA+TGG	-	chr6.1:1305033-1305052	MS.gene82860:intron	30.0%
!	TCTTCAAAAACAATTTTGGG+TGG	-	chr6.1:1305197-1305216	MS.gene82860:CDS	30.0%
!	TGATTTCTTTTTCTCGGTTA+AGG	-	chr6.1:1304735-1304754	MS.gene82860:CDS	30.0%
!	TGTGAATGGAAAATTTTGCA+AGG	-	chr6.1:1304690-1304709	MS.gene82860:CDS	30.0%
!!	ATCACAAAAGTACTCAACAA+AGG	-	chr6.1:1304976-1304995	MS.gene82860:intron	30.0%
	ATACTAGGACTAAACACTCT+AGG	-	chr6.1:1304814-1304833	MS.gene82860:CDS	35.0%
	GATGTGTTTGTGTTTCCAAT+TGG	-	chr6.1:1305000-1305019	MS.gene82860:intron	35.0%
	TGAAAGTGAATGAGACCAAT+TGG	+	chr6.1:1305018-1305037	None:intergenic	35.0%
	TTAGCAATAGTGATAACACC+TGG	+	chr6.1:1305096-1305115	None:intergenic	35.0%
!	TAGTGATAACACCTGGATTT+TGG	+	chr6.1:1305089-1305108	None:intergenic	35.0%
!	TGAGTACTTTTGTGATGAGA+CGG	+	chr6.1:1304972-1304991	None:intergenic	35.0%
!	TGTTTTGCAGTCTTTGTGAA+TGG	-	chr6.1:1304676-1304695	MS.gene82860:CDS	35.0%
!	TTCTTTTTCTCGGTTAAGGA+AGG	-	chr6.1:1304739-1304758	MS.gene82860:CDS	35.0%
	ACATGATGCTAAGGCAAAGA+AGG	+	chr6.1:1304431-1304450	None:intergenic	40.0%
	AGCATACATACCACCATTCT+TGG	+	chr6.1:1304509-1304528	None:intergenic	40.0%
	AGTATCTCATTAACCGCTAC+TGG	+	chr6.1:1304799-1304818	None:intergenic	40.0%
	ATAAGAATCTCAGTGGCTCT+AGG	+	chr6.1:1304898-1304917	None:intergenic	40.0%
	ATCAATGACACCAAGAATGG+TGG	-	chr6.1:1304496-1304515	MS.gene82860:CDS	40.0%
	ATTGTCCACTTGGAAAGCTT+TGG	+	chr6.1:1305163-1305182	None:intergenic	40.0%
	CAACACGATAAGAATCTCAG+TGG	+	chr6.1:1304905-1304924	None:intergenic	40.0%
	CACTGAGATTCTTATCGTGT+TGG	-	chr6.1:1304903-1304922	MS.gene82860:CDS	40.0%
	CCAAGTGGACAATAACATAG+TGG	-	chr6.1:1305170-1305189	MS.gene82860:CDS	40.0%
	CCACTATGTTATTGTCCACT+TGG	+	chr6.1:1305173-1305192	None:intergenic	40.0%
	GAGATTCTTATCGTGTTGGA+GGG	-	chr6.1:1304907-1304926	MS.gene82860:CDS	40.0%
	GCTATCAATGACACCAAGAA+TGG	-	chr6.1:1304493-1304512	MS.gene82860:CDS	40.0%
	GGAAACACATCAAATCCACT+TGG	-	chr6.1:1304760-1304779	MS.gene82860:CDS	40.0%
	GTAGCGGTTAATGAGATACT+AGG	-	chr6.1:1304799-1304818	MS.gene82860:CDS	40.0%
	TGAGATTCTTATCGTGTTGG+AGG	-	chr6.1:1304906-1304925	MS.gene82860:CDS	40.0%
	TTCAAAAGTGACACCAGTAG+CGG	-	chr6.1:1304783-1304802	MS.gene82860:CDS	40.0%
!	CCACACAAAAGTCTTGTAGA+GGG	+	chr6.1:1304474-1304493	None:intergenic	40.0%
!	TAAGAATCTCAGTGGCTCTA+GGG	+	chr6.1:1304897-1304916	None:intergenic	40.0%
!	TTTGTGATGAGACGGTTTTC+TGG	+	chr6.1:1304964-1304983	None:intergenic	40.0%
!!	TCATTTGGTGTAGCAAGCTT+TGG	+	chr6.1:1304718-1304737	None:intergenic	40.0%
!!	TCGTGTTGACTTTGCATCTA+GGG	-	chr6.1:1304849-1304868	MS.gene82860:CDS	40.0%
!!	TTGGAGGGTACTCTATATGT+CGG	-	chr6.1:1304922-1304941	MS.gene82860:CDS	40.0%
	TCTCACCAAAGCTTTCCAAG+TGG	-	chr6.1:1305155-1305174	MS.gene82860:CDS	45.0%
!	ACAAAAGTCTTGTAGAGGGC+TGG	+	chr6.1:1304470-1304489	None:intergenic	45.0%
!	CAAAAGTCTTGTAGAGGGCT+GGG	+	chr6.1:1304469-1304488	None:intergenic	45.0%
!	CCCTCTACAAGACTTTTGTG+TGG	-	chr6.1:1304471-1304490	MS.gene82860:CDS	45.0%
!	GCCACACAAAAGTCTTGTAG+AGG	+	chr6.1:1304475-1304494	None:intergenic	45.0%
!!	CGTGTTGACTTTGCATCTAG+GGG	-	chr6.1:1304850-1304869	MS.gene82860:CDS	45.0%
!!	CTCGTGTTGACTTTGCATCT+AGG	-	chr6.1:1304848-1304867	MS.gene82860:CDS	45.0%
!!!	GGTGTCACTTTTGAACCAAG+TGG	+	chr6.1:1304778-1304797	None:intergenic	45.0%
	GGACTTAGCAGCCAAAATCC+AGG	-	chr6.1:1305075-1305094	MS.gene82860:intron	50.0%
	GGCTAAGGCACATGATGCTA+AGG	+	chr6.1:1304440-1304459	None:intergenic	50.0%
	TTGGCTGCTAAGTCCAGCAA+TGG	+	chr6.1:1305070-1305089	None:intergenic	50.0%
	TTGTAGAGGGCTGGGATCAA+AGG	+	chr6.1:1304461-1304480	None:intergenic	50.0%
	AGGGCTGGGATCAAAGGCTA+AGG	+	chr6.1:1304455-1304474	None:intergenic	55.0%
	GGAAATGCTCTCGCCATTGC+TGG	-	chr6.1:1305054-1305073	MS.gene82860:intron	55.0%
!!	GCTCTAGGGTGAGTATGTGG+AGG	+	chr6.1:1304883-1304902	None:intergenic	55.0%
!!	GTGGCTCTAGGGTGAGTATG+TGG	+	chr6.1:1304886-1304905	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	1304400	1305230	1304400	ID=MS.gene82860
chr6.1	mRNA	1304400	1305230	1304400	ID=MS.gene82860.t1;Parent=MS.gene82860
chr6.1	exon	1305113	1305230	1305113	ID=MS.gene82860.t1.exon1;Parent=MS.gene82860.t1
chr6.1	CDS	1305113	1305230	1305113	ID=cds.MS.gene82860.t1;Parent=MS.gene82860.t1
chr6.1	exon	1304400	1304944	1304400	ID=MS.gene82860.t1.exon2;Parent=MS.gene82860.t1
chr6.1	CDS	1304400	1304944	1304400	ID=cds.MS.gene82860.t1;Parent=MS.gene82860.t1

Gene Sequence

>MS.gene82860

ATGAAGACTACTTACTTGTTTGTGACAGCCTTCTTTGCCTTAGCATCATGTGCCTTAGCCTTTGATCCCAGCCCTCTACAAGACTTTTGTGTGGCTATCAATGACACCAAGAATGGTGGTATGTATGCTCTTTTAAATTAACAATATTTGGTTAGAGATTTCTTTATTTATTTTTAGTTTTCTGGTTCAACTTGTTGAGTCAATTGAAACTATGATCTAGAAATCTCATTAATATATATACATATATAAGAGTAGTATATGATTTCTTTAATGATTTGTTTTGCAGTCTTTGTGAATGGAAAATTTTGCAAGGATCCAAAGCTTGCTACACCAAATGATTTCTTTTTCTCGGTTAAGGAAGGAAACACATCAAATCCACTTGGTTCAAAAGTGACACCAGTAGCGGTTAATGAGATACTAGGACTAAACACTCTAGGTATCTCTCTTGCTCGTGTTGACTTTGCATCTAGGGGACTAAATCCTCCACATACTCACCCTAGAGCCACTGAGATTCTTATCGTGTTGGAGGGTACTCTATATGTCGGATTTGTTACTTCTAATCCAGAAAACCGTCTCATCACAAAAGTACTCAACAAAGGAGATGTGTTTGTGTTTCCAATTGGTCTCATTCACTTTCAATTGAATGTTGGGTATGGAAATGCTCTCGCCATTGCTGGACTTAGCAGCCAAAATCCAGGTGTTATCACTATTGCTAATGCTGTATTTGGGTCTAATCCAAAAATTTCTTCAGAAGTTCTCACCAAAGCTTTCCAAGTGGACAATAACATAGTGGACAATCTTCAAAAACAATTTTGGGTGGACAACAACTAG

Protein sequence

>MS.gene82860.t1

MKTTYLFVTAFFALASCALAFDPSPLQDFCVAINDTKNGVFVNGKFCKDPKLATPNDFFFSVKEGNTSNPLGSKVTPVAVNEILGLNTLGISLARVDFASRGLNPPHTHPRATEILIVLEGTLYVGFVTSNPENRLITKVLNKGDVFVFPIGLIHFQLNVGYGNALAIAGLSSQNPGVITIANAVFGSNPKISSEVLTKAFQVDNNIVDNLQKQFWVDNN