AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032597

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032597.t1 MTR_6g005350 93.204 206 14 0 1 206 14 219 1.78e-141 394
MS.gene032597.t1 MTR_6g005340 77.778 207 45 1 1 206 14 220 1.06e-109 313
MS.gene032597.t1 MTR_6g005360 77.295 207 46 1 1 206 14 220 2.58e-109 312
MS.gene032597.t1 MTR_6g005330 77.295 207 46 1 1 206 14 220 5.75e-109 311
MS.gene032597.t1 MTR_6g005310 77.184 206 46 1 1 205 14 219 3.35e-108 309
MS.gene032597.t1 MTR_4g017050 67.633 207 65 2 2 206 15 221 6.54e-92 268
MS.gene032597.t1 MTR_5g046410 67.633 207 65 2 2 206 15 221 7.71e-92 268
MS.gene032597.t1 MTR_5g046430 67.633 207 65 2 2 206 15 221 7.71e-92 268
MS.gene032597.t1 MTR_4g017030 67.633 207 65 2 2 206 15 221 7.71e-92 268
MS.gene032597.t1 MTR_4g017040 67.633 207 65 2 2 206 15 221 1.00e-91 268
MS.gene032597.t1 MTR_2g019250 67.633 207 65 2 2 206 15 221 1.36e-91 267
MS.gene032597.t1 MTR_1g079490 68.269 208 63 3 2 206 15 222 1.93e-91 267
MS.gene032597.t1 MTR_6g005380 69.744 195 57 2 1 193 14 208 1.16e-90 265
MS.gene032597.t1 MTR_1g023770 55.000 200 79 4 5 201 18 209 1.50e-66 203
MS.gene032597.t1 MTR_2g030855 55.000 200 82 5 5 201 18 212 1.61e-63 196
MS.gene032597.t1 MTR_2g031270 55.729 192 77 5 13 201 27 213 4.49e-61 190
MS.gene032597.t1 MTR_2g030895 55.866 179 74 4 27 201 1 178 2.10e-57 179
MS.gene032597.t1 MTR_2g030865 54.749 179 76 4 27 201 1 178 8.26e-56 175
MS.gene032597.t1 MTR_1g085500 45.274 201 103 4 3 200 17 213 4.02e-52 167
MS.gene032597.t1 MTR_7g111240 45.408 196 100 4 9 201 20 211 4.06e-46 152
MS.gene032597.t1 MTR_1g085140 42.714 199 107 4 6 201 21 215 1.29e-44 148
MS.gene032597.t1 MTR_7g111240 44.898 196 98 5 9 201 20 208 4.83e-43 144
MS.gene032597.t1 MTR_2g031300 50.296 169 60 4 27 192 1 148 1.97e-42 140
MS.gene032597.t1 MTR_1g112200 40.196 204 100 6 5 201 19 207 7.49e-38 130
MS.gene032597.t1 MTR_5g036570 41.624 197 107 5 9 201 27 219 6.42e-37 128
MS.gene032597.t1 MTR_1g060120 36.181 199 118 4 9 201 26 221 3.25e-33 119
MS.gene032597.t1 MTR_8g020750 41.765 170 93 3 15 182 25 190 8.70e-32 115
MS.gene032597.t1 MTR_8g020590 37.037 189 112 4 13 199 19 202 1.20e-30 112
MS.gene032597.t1 MTR_2g041570 36.364 187 112 4 15 199 23 204 2.76e-29 108
MS.gene032597.t1 MTR_2g041580 36.559 186 111 4 15 198 23 203 2.82e-29 108
MS.gene032597.t1 MTR_2g041550 37.073 205 111 7 3 198 8 203 2.82e-29 108
MS.gene032597.t1 MTR_4g052770 41.606 137 76 3 66 201 72 205 1.11e-28 107
MS.gene032597.t1 MTR_4g052780 41.606 137 76 3 66 201 72 205 1.63e-28 106
MS.gene032597.t1 MTR_2g036120 36.139 202 122 4 1 201 10 205 2.28e-28 106
MS.gene032597.t1 MTR_8g007300 39.779 181 104 3 9 187 26 203 2.30e-28 106
MS.gene032597.t1 MTR_3g019680 36.098 205 116 6 4 201 8 204 5.70e-27 102
MS.gene032597.t1 MTR_2g044040 34.653 202 125 4 1 201 10 205 5.96e-27 102
MS.gene032597.t1 MTR_2g086620 41.791 134 74 3 69 201 74 204 5.98e-27 102
MS.gene032597.t1 MTR_2g086630 41.791 134 74 3 69 201 74 204 8.50e-27 102
MS.gene032597.t1 MTR_2g086640 35.052 194 109 6 9 201 26 203 9.23e-27 102
MS.gene032597.t1 MTR_3g019710 35.149 202 124 4 1 201 10 205 1.35e-26 101
MS.gene032597.t1 MTR_8g020630 34.518 197 122 4 6 201 15 205 1.52e-26 101
MS.gene032597.t1 MTR_8g020770 38.743 191 108 5 14 201 24 208 2.27e-26 100
MS.gene032597.t1 MTR_3g019650 35.610 205 117 6 4 201 8 204 3.71e-26 100
MS.gene032597.t1 MTR_8g020650 35.638 188 114 4 15 201 24 205 5.11e-26 100
MS.gene032597.t1 MTR_2g045100 34.673 199 123 4 4 201 13 205 2.46e-25 98.2
MS.gene032597.t1 MTR_8g020670 34.211 190 118 4 13 201 22 205 7.56e-24 94.4
MS.gene032597.t1 MTR_5g031460 31.658 199 129 4 4 201 13 205 1.78e-23 93.6
MS.gene032597.t1 MTR_8g020760 34.737 190 117 4 13 201 24 207 1.82e-22 90.9
MS.gene032597.t1 MTR_7g011340 34.375 192 115 5 13 201 22 205 2.32e-22 90.5
MS.gene032597.t1 MTR_0284s0010 34.171 199 120 5 6 201 15 205 2.47e-22 90.5
MS.gene032597.t1 MTR_8g020610 33.862 189 116 6 15 201 22 203 5.62e-22 89.4
MS.gene032597.t1 MTR_8g020763 35.057 174 107 3 30 201 17 186 1.02e-21 88.2
MS.gene032597.t1 MTR_3g096330 34.857 175 98 3 2 162 557 729 6.82e-21 90.5
MS.gene032597.t1 MTR_4g010340 36.879 141 84 3 61 201 66 201 1.34e-20 85.9
MS.gene032597.t1 MTR_2g019780 32.447 188 118 5 15 201 29 208 7.43e-20 84.0
MS.gene032597.t1 MTR_2g030915 52.000 75 22 1 80 154 1 61 1.76e-18 77.4
MS.gene032597.t1 MTR_3g073170 30.526 190 119 6 15 201 27 206 1.81e-16 74.7
MS.gene032597.t1 MTR_3g019810 30.500 200 124 7 1 198 116 302 2.03e-14 70.9
MS.gene032597.t1 MTR_4g027415 36.719 128 71 4 13 137 22 142 2.58e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032597.t1 AT5G39160 57.143 203 82 4 3 201 18 219 3.13e-70 213
MS.gene032597.t1 AT5G39190 57.143 203 82 4 3 201 18 219 4.90e-70 213
MS.gene032597.t1 AT5G38930 59.184 196 77 2 9 201 26 221 1.25e-69 212
MS.gene032597.t1 AT5G38940 58.163 196 79 2 9 201 26 221 1.72e-69 211
MS.gene032597.t1 AT5G38940 58.163 196 79 2 9 201 50 245 2.64e-69 212
MS.gene032597.t1 AT5G39130 56.158 203 84 4 3 201 18 219 8.18e-69 210
MS.gene032597.t1 AT3G05950 57.843 204 81 4 2 201 19 221 1.33e-68 209
MS.gene032597.t1 AT5G39110 55.172 203 87 3 3 201 18 220 3.20e-68 208
MS.gene032597.t1 AT5G39160 55.665 203 81 4 3 201 18 215 2.58e-67 206
MS.gene032597.t1 AT5G39150 55.779 199 84 4 7 201 21 219 2.63e-67 206
MS.gene032597.t1 AT5G39120 55.779 199 84 4 7 201 21 219 3.38e-67 206
MS.gene032597.t1 AT5G39180 55.779 199 84 4 7 201 21 219 5.76e-67 205
MS.gene032597.t1 AT4G14630 53.960 202 89 3 4 201 21 222 4.66e-65 200
MS.gene032597.t1 AT5G38910 57.653 196 80 2 9 201 24 219 6.46e-65 200
MS.gene032597.t1 AT5G38960 54.455 202 88 2 4 201 21 222 1.31e-64 199
MS.gene032597.t1 AT3G04200 55.882 204 85 4 2 201 20 222 3.94e-63 196
MS.gene032597.t1 AT5G39190 51.741 201 74 3 3 201 18 197 3.33e-60 187
MS.gene032597.t1 AT5G39160 51.244 201 75 3 3 201 18 197 8.60e-60 186
MS.gene032597.t1 AT3G04150 51.471 204 94 4 2 201 19 221 9.78e-59 184
MS.gene032597.t1 AT3G04150 49.537 216 93 4 2 201 19 234 1.80e-58 184
MS.gene032597.t1 AT3G04170 50.490 204 93 5 2 201 19 218 3.24e-55 175
MS.gene032597.t1 AT3G04190 49.510 204 98 4 2 201 19 221 3.61e-55 175
MS.gene032597.t1 AT3G04180 48.529 204 100 4 2 201 19 221 1.85e-54 173
MS.gene032597.t1 AT1G02335 43.137 204 109 4 1 201 16 215 3.41e-49 160
MS.gene032597.t1 AT5G26700 44.554 202 100 5 4 201 16 209 3.43e-49 159
MS.gene032597.t1 AT3G05930 44.670 197 101 4 9 201 23 215 4.40e-48 157
MS.gene032597.t1 AT1G09560 44.162 197 103 4 9 202 24 216 2.12e-47 155
MS.gene032597.t1 AT3G62020 43.284 201 106 5 5 201 19 215 2.01e-46 152
MS.gene032597.t1 AT1G18980 44.388 196 100 5 9 201 29 218 3.84e-42 142
MS.gene032597.t1 AT1G18970 43.367 196 102 5 9 201 29 218 4.92e-42 141
MS.gene032597.t1 AT3G62020 43.575 179 95 4 27 201 10 186 1.01e-40 137
MS.gene032597.t1 AT5G38910 44.898 196 68 3 9 201 24 182 8.34e-40 134
MS.gene032597.t1 AT3G10080 39.901 203 113 5 4 201 21 219 2.57e-37 129
MS.gene032597.t1 AT3G10080 39.109 202 116 4 4 201 92 290 1.86e-36 129
MS.gene032597.t1 AT1G10460 37.186 199 117 5 9 201 19 215 6.10e-33 118
MS.gene032597.t1 AT5G61750 40.331 181 103 3 9 187 19 196 1.31e-32 117
MS.gene032597.t1 AT5G20630 35.859 198 120 4 3 198 12 204 3.71e-29 108
MS.gene032597.t1 AT1G72610 36.702 188 112 4 13 198 19 201 3.80e-29 108
MS.gene032597.t1 AT1G74820 34.518 197 114 6 11 201 38 225 9.65e-27 102
MS.gene032597.t1 AT5G38950 53.125 64 29 1 131 193 2 65 5.76e-13 63.2

Find 44 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATTGTTAAGGAGGTATT+TGG 0.136261 6.3:+1442959 MS.gene032597:CDS
GGAAATGCAGCTGCCATTTC+CGG 0.176460 6.3:+1442908 MS.gene032597:CDS
TCTTCTGGTGTAACAAGTTT+TGG 0.236271 6.3:-1442569 None:intergenic
ACAATCTTCAGAAGCAATTC+TGG 0.265114 6.3:+1443044 MS.gene032597:CDS
TAGTGATAACTCTTGAATTA+TGG 0.314281 6.3:-1442940 None:intergenic
CCCACAGTTAGTGAGATATT+AGG 0.322926 6.3:+1442653 MS.gene032597:CDS
CTTCTGAAGATTGTCAACTA+TGG 0.352917 6.3:-1443035 None:intergenic
AAGAGTTATCACTATTGTTA+AGG 0.372185 6.3:+1442949 MS.gene032597:CDS
GAAATGCAGCTGCCATTTCC+GGG 0.374807 6.3:+1442909 MS.gene032597:CDS
GATGTCTTTGTGTTTCCAAT+TGG 0.380749 6.3:+1442854 MS.gene032597:CDS
CAAAAGTCTTGCAGAGGATT+GGG 0.395175 6.3:-1441997 None:intergenic
TGGAAGTGAATTAGACCAAT+TGG 0.397935 6.3:-1442869 None:intergenic
CTATTGTTAAGGAGGTATTT+GGG 0.412780 6.3:+1442960 MS.gene032597:CDS
TCGTATTGACTTTGCACCTA+AGG 0.416056 6.3:+1442703 MS.gene032597:CDS
ACAAAAGTCTTGCAGAGGAT+TGG 0.427807 6.3:-1441998 None:intergenic
TGAATTATGGCTGTTAAGCC+CGG 0.446254 6.3:-1442927 None:intergenic
ATATTAGGTTTAAATACTCT+TGG 0.447783 6.3:+1442668 MS.gene032597:CDS
ATGGCTGTTAAGCCCGGAAA+TGG 0.455636 6.3:-1442921 None:intergenic
TGTGGAGGATTTAGACCCTT+AGG 0.459506 6.3:-1442719 None:intergenic
TTGGAGGGTACTCTCAATGT+TGG 0.485489 6.3:+1442776 MS.gene032597:CDS
CGTATTGACTTTGCACCTAA+GGG 0.496446 6.3:+1442704 MS.gene032597:CDS
TGAGATACTTATAGTGTTGG+AGG 0.502762 6.3:+1442760 MS.gene032597:CDS
TGCTGAGATACTTATAGTGT+TGG 0.519488 6.3:+1442757 MS.gene032597:CDS
AATTCACTTCCAACATAATG+TGG 0.523127 6.3:+1442880 MS.gene032597:CDS
ATAAGTATCTCAGCAGCTCT+AGG 0.523792 6.3:-1442749 None:intergenic
TATCAACGACATCAAGACTT+GGG 0.542177 6.3:+1442026 MS.gene032597:CDS
GAAAACATATCAAGTCTACT+TGG 0.544144 6.3:+1442614 MS.gene032597:CDS
TCTTCAGAAGCAATTCTGGT+TGG 0.562500 6.3:+1443048 MS.gene032597:CDS
ACCTAATATCTCACTAACTG+TGG 0.565377 6.3:-1442654 None:intergenic
ATTGTCCACTTGAAGAGCCT+TGG 0.568947 6.3:-1443011 None:intergenic
ATTCACTTCCAACATAATGT+GGG 0.576017 6.3:+1442881 MS.gene032597:CDS
TCTCACCAAGGCTCTTCAAG+TGG 0.580497 6.3:+1443006 MS.gene032597:CDS
AGTTATCACTATTGTTAAGG+AGG 0.582820 6.3:+1442952 MS.gene032597:CDS
CCTAATATCTCACTAACTGT+GGG 0.596269 6.3:-1442653 None:intergenic
TTCACTTCCAACATAATGTG+GGG 0.602338 6.3:+1442882 MS.gene032597:CDS
ATTACAAAAGTTCTCAACAA+AGG 0.621502 6.3:+1442830 MS.gene032597:CDS
TTATCAACGACATCAAGACT+TGG 0.624303 6.3:+1442025 MS.gene032597:CDS
TTCTTCAGAAGTTCTCACCA+AGG 0.626705 6.3:+1442994 MS.gene032597:CDS
ATCACACAAAAGTCTTGCAG+AGG 0.638732 6.3:-1442003 None:intergenic
GAGATACTTATAGTGTTGGA+GGG 0.645513 6.3:+1442761 MS.gene032597:CDS
ATCAACGACATCAAGACTTG+GGG 0.661042 6.3:+1442027 MS.gene032597:CDS
GCAGCTCTAGGATGAGCATG+TGG 0.671856 6.3:-1442737 None:intergenic
GCTCTAGGATGAGCATGTGG+AGG 0.677969 6.3:-1442734 None:intergenic
TCACTTCCAACATAATGTGG+GGG 0.678024 6.3:+1442883 MS.gene032597:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGAAATTTATCTAATTTA+AGG - chr6.3:1442237-1442256 None:intergenic 10.0%
!! TTGAAATTTATCTAATTTAA+GGG - chr6.3:1442236-1442255 None:intergenic 10.0%
!! AAATGTATTTGATCTAAATT+TGG - chr6.3:1442169-1442188 None:intergenic 15.0%
!! ATATTAGGTTTAAATACTCT+TGG + chr6.3:1442668-1442687 MS.gene032597:CDS 20.0%
!! ATGTGTTTAAATGCATATAT+AGG - chr6.3:1442462-1442481 None:intergenic 20.0%
!!! ATAAAATACATTTGACCTTT+TGG - chr6.3:1442146-1442165 None:intergenic 20.0%
!!! TTACTGTAGAAATATTTTGA+TGG + chr6.3:1442321-1442340 MS.gene032597:intron 20.0%
!!! TTCAATTTAATTTTCAGTGT+TGG + chr6.3:1442523-1442542 MS.gene032597:intron 20.0%
!!! TTTAGTTCTTGAAATTGTAA+GGG - chr6.3:1442425-1442444 None:intergenic 20.0%
!!! TTTTAGTTCTTGAAATTGTA+AGG - chr6.3:1442426-1442445 None:intergenic 20.0%
! AAGAGTTATCACTATTGTTA+AGG + chr6.3:1442949-1442968 MS.gene032597:CDS 25.0%
! ATTACAAAAGTTCTCAACAA+AGG + chr6.3:1442830-1442849 MS.gene032597:CDS 25.0%
! ATTGACATTCTTTACTTTGA+AGG + chr6.3:1442357-1442376 MS.gene032597:intron 25.0%
! ATTGAGAAAAAGAAATCTTC+TGG - chr6.3:1442587-1442606 None:intergenic 25.0%
! TAGTGATAACTCTTGAATTA+TGG - chr6.3:1442943-1442962 None:intergenic 25.0%
! TGATCTTAGATATAACCAAA+AGG + chr6.3:1442128-1442147 MS.gene032597:intron 25.0%
AATTCACTTCCAACATAATG+TGG + chr6.3:1442880-1442899 MS.gene032597:CDS 30.0%
AGTTATCACTATTGTTAAGG+AGG + chr6.3:1442952-1442971 MS.gene032597:CDS 30.0%
ATTCACTTCCAACATAATGT+GGG + chr6.3:1442881-1442900 MS.gene032597:CDS 30.0%
GAAAACATATCAAGTCTACT+TGG + chr6.3:1442614-1442633 MS.gene032597:CDS 30.0%
GTTATATTGTTACAAGACGA+TGG - chr6.3:1442494-1442513 None:intergenic 30.0%
! GGAGTATTTCGCAAATTTAA+AGG - chr6.3:1442105-1442124 None:intergenic 30.0%
! TGAGAACTTTTGTAATGAGA+CGG - chr6.3:1442826-1442845 None:intergenic 30.0%
! TGGTTATATCTAAGATCAGA+TGG - chr6.3:1442126-1442145 None:intergenic 30.0%
!! ACTATTGTTAAGGAGGTATT+TGG + chr6.3:1442959-1442978 MS.gene032597:CDS 30.0%
!! CTATTGTTAAGGAGGTATTT+GGG + chr6.3:1442960-1442979 MS.gene032597:CDS 30.0%
!!! TAATTTTCAGTGTTGGTGAA+CGG + chr6.3:1442530-1442549 MS.gene032597:intron 30.0%
!!! TTGTAATGAGACGGTTTTTT+GGG - chr6.3:1442817-1442836 None:intergenic 30.0%
!!! TTTGTAATGAGACGGTTTTT+TGG - chr6.3:1442818-1442837 None:intergenic 30.0%
ACAATCTTCAGAAGCAATTC+TGG + chr6.3:1443044-1443063 MS.gene032597:CDS 35.0%
ACCTAATATCTCACTAACTG+TGG - chr6.3:1442657-1442676 None:intergenic 35.0%
AGTTCTTGAAATTGTAAGGG+TGG - chr6.3:1442422-1442441 None:intergenic 35.0%
CCTAATATCTCACTAACTGT+GGG - chr6.3:1442656-1442675 None:intergenic 35.0%
GATGTCTTTGTGTTTCCAAT+TGG + chr6.3:1442854-1442873 MS.gene032597:CDS 35.0%
TATCAACGACATCAAGACTT+GGG + chr6.3:1442026-1442045 MS.gene032597:CDS 35.0%
TGCTGAGATACTTATAGTGT+TGG + chr6.3:1442757-1442776 MS.gene032597:CDS 35.0%
TGGAAGTGAATTAGACCAAT+TGG - chr6.3:1442872-1442891 None:intergenic 35.0%
TTATCAACGACATCAAGACT+TGG + chr6.3:1442025-1442044 MS.gene032597:CDS 35.0%
TTCACTTCCAACATAATGTG+GGG + chr6.3:1442882-1442901 MS.gene032597:CDS 35.0%
! CTTCTGAAGATTGTCAACTA+TGG - chr6.3:1443038-1443057 None:intergenic 35.0%
! GAGATACTTATAGTGTTGGA+GGG + chr6.3:1442761-1442780 MS.gene032597:CDS 35.0%
! TCTTCTGGTGTAACAAGTTT+TGG - chr6.3:1442572-1442591 None:intergenic 35.0%
! TGAGATACTTATAGTGTTGG+AGG + chr6.3:1442760-1442779 MS.gene032597:CDS 35.0%
ACAAAAGTCTTGCAGAGGAT+TGG - chr6.3:1442001-1442020 None:intergenic 40.0%
ATAAGTATCTCAGCAGCTCT+AGG - chr6.3:1442752-1442771 None:intergenic 40.0%
ATCAACGACATCAAGACTTG+GGG + chr6.3:1442027-1442046 MS.gene032597:CDS 40.0%
ATCACACAAAAGTCTTGCAG+AGG - chr6.3:1442006-1442025 None:intergenic 40.0%
CAAAAGTCTTGCAGAGGATT+GGG - chr6.3:1442000-1442019 None:intergenic 40.0%
CCCACAGTTAGTGAGATATT+AGG + chr6.3:1442653-1442672 MS.gene032597:CDS 40.0%
TCACTTCCAACATAATGTGG+GGG + chr6.3:1442883-1442902 MS.gene032597:CDS 40.0%
TCTTCAGAAGCAATTCTGGT+TGG + chr6.3:1443048-1443067 MS.gene032597:CDS 40.0%
TGAATTATGGCTGTTAAGCC+CGG - chr6.3:1442930-1442949 None:intergenic 40.0%
TTCTTCAGAAGTTCTCACCA+AGG + chr6.3:1442994-1443013 MS.gene032597:CDS 40.0%
!! CGTATTGACTTTGCACCTAA+GGG + chr6.3:1442704-1442723 MS.gene032597:CDS 40.0%
!! TCGTATTGACTTTGCACCTA+AGG + chr6.3:1442703-1442722 MS.gene032597:CDS 40.0%
ATTGTCCACTTGAAGAGCCT+TGG - chr6.3:1443014-1443033 None:intergenic 45.0%
TGTGGAGGATTTAGACCCTT+AGG - chr6.3:1442722-1442741 None:intergenic 45.0%
TTCCAACATAATGTGGGGGA+TGG + chr6.3:1442887-1442906 MS.gene032597:CDS 45.0%
TTCCATCCCCCACATTATGT+TGG - chr6.3:1442892-1442911 None:intergenic 45.0%
!! TTGGAGGGTACTCTCAATGT+TGG + chr6.3:1442776-1442795 MS.gene032597:CDS 45.0%
ATGGCTGTTAAGCCCGGAAA+TGG - chr6.3:1442924-1442943 None:intergenic 50.0%
TCTCACCAAGGCTCTTCAAG+TGG + chr6.3:1443006-1443025 MS.gene032597:CDS 50.0%
! GAAATGCAGCTGCCATTTCC+GGG + chr6.3:1442909-1442928 MS.gene032597:CDS 50.0%
! GGAAATGCAGCTGCCATTTC+CGG + chr6.3:1442908-1442927 MS.gene032597:CDS 50.0%
!! GCAGCTCTAGGATGAGCATG+TGG - chr6.3:1442740-1442759 None:intergenic 55.0%
!! GCTCTAGGATGAGCATGTGG+AGG - chr6.3:1442737-1442756 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 1441970 1443081 1441970 ID=MS.gene032597
chr6.3 mRNA 1441970 1443081 1441970 ID=MS.gene032597.t1;Parent=MS.gene032597
chr6.3 exon 1441970 1442048 1441970 ID=MS.gene032597.t1.exon1;Parent=MS.gene032597.t1
chr6.3 CDS 1441970 1442048 1441970 ID=cds.MS.gene032597.t1;Parent=MS.gene032597.t1
chr6.3 exon 1442540 1443081 1442540 ID=MS.gene032597.t1.exon2;Parent=MS.gene032597.t1
chr6.3 CDS 1442540 1443081 1442540 ID=cds.MS.gene032597.t1;Parent=MS.gene032597.t1
Gene Sequence

>MS.gene032597

ATGACATCTTTTGTCTTTACATTTGATCCCAATCCTCTGCAAGACTTTTGTGTGATTATCAACGACATCAAGACTTGGGGTATGTATATATAATAATTTATTTTATTTTTATTAACAGTTGATCGATTTAGTCCTTTAAATTTGCGAAATACTCCATCTGATCTTAGATATAACCAAAAGGTCAAATGTATTTTATCCAAATTTAGATCAAATACATTTAAATTTTTGCTTATATATAAGACAAAAGCGATTAATTACTTTGTCCCTTAAATTAGATAAATTTCAATCAAATTAGTCACTTTTTCAAATTTTGATGCAATGAAATATTATTTTATTCGTTTTGATGAATATTTACTGTAGAAATATTTTGATGGATGAACTAAATTGATTGACATTCTTTACTTTGAAGGACTAATTTAGTGTTTCATATAGTTGTAGAACTAAATTATCCACCCTTACAATTTCAAGAACTAAAATGCATTTTTTTCTCCTATATATGCATTTAAACACATGCGTCACATCCATCGTCTTGTAACAATATAACTTTTCTCTATTCAATTTAATTTTCAGTGTTGGTGAACGGAAAATGCTACAAAGATCCAAAACTTGTTACACCAGAAGATTTCTTTTTCTCAATAAAAGAAGAAAACATATCAAGTCTACTTGGTTCGCAAGTGACACTACCCACAGTTAGTGAGATATTAGGTTTAAATACTCTTGGCATCTCTGTTGCTCGTATTGACTTTGCACCTAAGGGTCTAAATCCTCCACATGCTCATCCTAGAGCTGCTGAGATACTTATAGTGTTGGAGGGTACTCTCAATGTTGGTTTTGTTACTTCTAACCCAAAAAACCGTCTCATTACAAAAGTTCTCAACAAAGGAGATGTCTTTGTGTTTCCAATTGGTCTAATTCACTTCCAACATAATGTGGGGGATGGAAATGCAGCTGCCATTTCCGGGCTTAACAGCCATAATTCAAGAGTTATCACTATTGTTAAGGAGGTATTTGGGTCTAATAAAATTTCTTCAGAAGTTCTCACCAAGGCTCTTCAAGTGGACAATACCATAGTTGACAATCTTCAGAAGCAATTCTGGTTGGACAACAATTAG
Protein sequence

>MS.gene032597.t1

MTSFVFTFDPNPLQDFCVIINDIKTWVLVNGKCYKDPKLVTPEDFFFSIKEENISSLLGSQVTLPTVSEILGLNTLGISVARIDFAPKGLNPPHAHPRAAEILIVLEGTLNVGFVTSNPKNRLITKVLNKGDVFVFPIGLIHFQHNVGDGNAAAISGLNSHNSRVITIVKEVFGSNKISSEVLTKALQVDNTIVDNLQKQFWLDNN