AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50788

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50788.t1 MTR_5g046410 91.542 201 15 2 3 203 23 221 2.14e-128 360
MS.gene50788.t1 MTR_5g046430 91.542 201 15 2 3 203 23 221 2.14e-128 360
MS.gene50788.t1 MTR_4g017030 91.542 201 15 2 3 203 23 221 2.14e-128 360
MS.gene50788.t1 MTR_4g017050 91.045 201 16 2 3 203 23 221 6.77e-128 359
MS.gene50788.t1 MTR_4g017040 90.547 201 17 2 3 203 23 221 7.23e-127 357
MS.gene50788.t1 MTR_2g019250 89.552 201 19 2 3 203 23 221 1.90e-126 355
MS.gene50788.t1 MTR_1g079490 80.978 184 33 2 21 203 40 222 5.96e-104 298
MS.gene50788.t1 MTR_6g005340 78.689 183 37 1 21 203 40 220 2.33e-99 287
MS.gene50788.t1 MTR_6g005310 78.571 182 37 1 21 202 40 219 8.88e-99 285
MS.gene50788.t1 MTR_6g005330 78.142 183 38 1 21 203 40 220 9.38e-99 285
MS.gene50788.t1 MTR_6g005360 78.142 183 38 1 21 203 40 220 1.89e-98 285
MS.gene50788.t1 MTR_6g005350 66.120 183 59 2 21 203 40 219 5.90e-77 230
MS.gene50788.t1 MTR_2g030855 64.000 175 57 3 26 197 40 211 1.66e-73 221
MS.gene50788.t1 MTR_1g023770 62.983 181 63 2 19 197 30 208 2.36e-73 221
MS.gene50788.t1 MTR_6g005380 63.529 170 61 1 21 190 40 208 5.17e-73 220
MS.gene50788.t1 MTR_2g030895 63.793 174 56 4 28 197 7 177 2.13e-71 214
MS.gene50788.t1 MTR_2g031270 63.429 175 58 3 26 197 41 212 4.16e-71 215
MS.gene50788.t1 MTR_2g030865 63.218 174 57 4 28 197 7 177 1.97e-69 209
MS.gene50788.t1 MTR_2g031300 54.070 172 53 4 28 196 7 155 1.28e-51 164
MS.gene50788.t1 MTR_1g085500 46.328 177 89 2 23 197 41 213 3.73e-51 164
MS.gene50788.t1 MTR_7g111240 47.486 179 88 2 21 197 36 210 4.79e-48 156
MS.gene50788.t1 MTR_7g111240 48.023 177 86 2 23 197 35 207 1.14e-47 155
MS.gene50788.t1 MTR_1g085140 45.763 177 90 2 23 197 42 214 1.64e-47 155
MS.gene50788.t1 MTR_5g036570 44.199 181 94 3 20 197 42 218 3.88e-42 141
MS.gene50788.t1 MTR_1g112200 43.860 171 89 3 28 197 42 206 7.55e-41 138
MS.gene50788.t1 MTR_2g041550 41.546 207 103 4 1 195 3 203 2.56e-40 136
MS.gene50788.t1 MTR_2g041570 40.230 174 96 3 25 196 37 204 7.47e-36 125
MS.gene50788.t1 MTR_2g041580 40.462 173 95 3 25 195 37 203 9.46e-36 125
MS.gene50788.t1 MTR_1g060120 38.596 171 98 3 28 197 56 220 1.83e-35 124
MS.gene50788.t1 MTR_8g020750 43.478 161 77 3 11 169 33 181 2.14e-34 121
MS.gene50788.t1 MTR_8g007300 39.791 191 101 4 13 201 36 214 3.00e-34 121
MS.gene50788.t1 MTR_3g019710 42.038 157 84 3 24 179 37 187 1.48e-30 111
MS.gene50788.t1 MTR_8g020590 38.857 175 99 4 24 196 34 202 1.81e-30 111
MS.gene50788.t1 MTR_8g020630 41.727 139 75 2 24 161 37 170 7.37e-30 109
MS.gene50788.t1 MTR_8g020650 36.000 175 104 3 24 197 37 204 2.06e-29 108
MS.gene50788.t1 MTR_2g086620 41.481 135 72 3 63 196 74 202 1.67e-28 106
MS.gene50788.t1 MTR_3g019650 40.127 157 87 3 24 179 36 186 4.08e-28 105
MS.gene50788.t1 MTR_2g036120 42.336 137 73 2 24 159 37 168 5.07e-28 105
MS.gene50788.t1 MTR_2g086630 40.741 135 73 3 63 196 74 202 5.53e-28 105
MS.gene50788.t1 MTR_2g086640 40.741 135 73 3 63 196 73 201 6.07e-28 104
MS.gene50788.t1 MTR_2g045100 41.606 137 74 2 24 159 37 168 6.28e-28 104
MS.gene50788.t1 MTR_3g019680 40.127 157 87 3 24 179 36 186 8.81e-28 104
MS.gene50788.t1 MTR_4g052780 40.714 140 76 3 58 196 70 203 1.01e-27 104
MS.gene50788.t1 MTR_4g052770 40.714 140 76 3 58 196 70 203 1.13e-27 104
MS.gene50788.t1 MTR_8g020770 42.029 138 72 2 24 158 38 170 3.41e-27 103
MS.gene50788.t1 MTR_8g020670 40.288 139 77 2 24 161 37 170 4.81e-27 102
MS.gene50788.t1 MTR_2g044040 39.416 137 77 2 24 159 37 168 3.45e-26 100
MS.gene50788.t1 MTR_4g010340 37.143 175 101 4 24 197 34 200 8.36e-26 99.4
MS.gene50788.t1 MTR_3g096330 42.254 142 75 3 22 161 596 732 1.16e-25 103
MS.gene50788.t1 MTR_8g020763 36.471 170 98 3 24 188 17 181 2.54e-25 97.4
MS.gene50788.t1 MTR_0284s0010 37.870 169 96 3 24 188 37 200 5.47e-25 97.4
MS.gene50788.t1 MTR_5g031460 38.571 140 80 2 23 161 36 170 5.46e-24 94.7
MS.gene50788.t1 MTR_7g011340 37.278 169 97 3 24 188 37 200 9.47e-24 94.0
MS.gene50788.t1 MTR_8g020760 36.571 175 103 3 24 197 39 206 1.30e-23 93.6
MS.gene50788.t1 MTR_3g073170 36.095 169 96 4 24 188 41 201 2.62e-23 92.8
MS.gene50788.t1 MTR_2g019780 33.714 175 105 4 24 197 43 207 1.28e-22 91.3
MS.gene50788.t1 MTR_8g020610 35.294 170 100 5 28 195 39 200 2.56e-22 90.1
MS.gene50788.t1 MTR_2g030915 49.351 77 23 1 74 150 1 61 2.65e-18 76.6
MS.gene50788.t1 MTR_4g027415 38.182 110 62 2 25 133 38 142 3.09e-15 70.1
MS.gene50788.t1 MTR_3g019810 32.515 163 95 6 24 184 143 292 5.59e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50788.t1 AT3G05950 65.241 187 60 3 21 203 43 228 1.84e-80 239
MS.gene50788.t1 AT5G39160 63.687 179 62 2 21 197 41 218 1.46e-76 229
MS.gene50788.t1 AT5G39190 63.687 179 62 2 21 197 41 218 2.44e-76 229
MS.gene50788.t1 AT5G39130 62.570 179 64 2 21 197 41 218 7.37e-76 228
MS.gene50788.t1 AT5G39150 59.391 197 76 3 3 197 24 218 1.33e-75 227
MS.gene50788.t1 AT5G39120 59.391 197 76 3 3 197 24 218 2.01e-75 226
MS.gene50788.t1 AT5G39180 59.391 197 76 3 3 197 24 218 2.06e-75 226
MS.gene50788.t1 AT5G39110 62.570 179 64 2 21 197 42 219 3.15e-75 226
MS.gene50788.t1 AT5G39160 63.429 175 61 2 25 197 41 214 1.16e-73 222
MS.gene50788.t1 AT4G14630 59.391 197 76 3 3 197 27 221 1.89e-72 219
MS.gene50788.t1 AT3G04200 63.277 177 62 3 21 195 44 219 2.35e-71 216
MS.gene50788.t1 AT5G38940 61.453 179 65 2 21 197 44 220 9.72e-70 212
MS.gene50788.t1 AT5G38930 62.570 179 63 2 21 197 44 220 1.44e-69 211
MS.gene50788.t1 AT5G38940 61.453 179 65 2 21 197 68 244 1.58e-69 212
MS.gene50788.t1 AT5G38960 58.081 198 77 4 3 197 27 221 6.42e-69 210
MS.gene50788.t1 AT5G39160 65.789 152 51 1 46 197 46 196 2.10e-67 205
MS.gene50788.t1 AT5G39190 65.789 152 51 1 46 197 46 196 2.15e-67 205
MS.gene50788.t1 AT5G38910 58.081 198 76 4 3 197 25 218 2.10e-66 203
MS.gene50788.t1 AT3G04150 55.618 178 76 2 21 196 43 219 1.10e-62 194
MS.gene50788.t1 AT3G04150 55.618 178 76 2 21 196 56 232 1.11e-62 195
MS.gene50788.t1 AT3G04190 55.367 177 76 2 21 195 43 218 2.56e-62 193
MS.gene50788.t1 AT3G04170 53.933 178 76 3 21 196 43 216 4.34e-59 185
MS.gene50788.t1 AT3G04180 53.107 177 80 2 21 195 43 218 2.08e-58 183
MS.gene50788.t1 AT1G09560 46.328 177 89 2 23 197 42 214 4.74e-49 159
MS.gene50788.t1 AT1G02335 45.763 177 90 2 23 197 42 214 6.28e-49 159
MS.gene50788.t1 AT5G26700 49.405 168 72 4 23 186 39 197 9.55e-48 155
MS.gene50788.t1 AT3G05930 49.701 167 77 2 21 184 39 201 1.12e-47 155
MS.gene50788.t1 AT3G62020 47.191 178 87 3 23 197 12 185 1.72e-47 154
MS.gene50788.t1 AT3G62020 47.191 178 87 3 23 197 41 214 5.57e-47 154
MS.gene50788.t1 AT1G18970 45.198 177 89 3 23 197 47 217 2.61e-44 147
MS.gene50788.t1 AT1G18980 45.763 177 88 3 23 197 47 217 4.26e-43 144
MS.gene50788.t1 AT5G38910 45.455 198 64 4 3 197 25 181 3.32e-42 140
MS.gene50788.t1 AT1G10460 41.667 180 97 4 21 196 38 213 9.10e-41 138
MS.gene50788.t1 AT5G61750 45.695 151 76 2 20 168 36 182 4.21e-39 133
MS.gene50788.t1 AT3G10080 40.351 171 95 3 28 197 54 218 4.17e-38 131
MS.gene50788.t1 AT3G10080 40.351 171 95 3 28 197 125 289 1.98e-37 132
MS.gene50788.t1 AT5G20630 41.420 169 92 4 24 190 37 200 1.10e-33 119
MS.gene50788.t1 AT1G72610 39.884 173 96 5 25 195 35 201 2.66e-30 110
MS.gene50788.t1 AT1G74820 38.068 176 101 3 24 197 55 224 1.79e-29 109
MS.gene50788.t1 AT5G38950 54.167 72 33 0 127 198 2 73 8.53e-19 78.2

Find 52 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATACATACCACCATCTT+TGG 0.255130 4.1:-80384901 None:intergenic
TTTCAACTGAATGTTGGATA+TGG 0.274546 4.1:+80385518 MS.gene50788:CDS
CTTATCCACTTGAAAAGCTT+TGG 0.335788 4.1:-80385645 None:intergenic
TAACACGCTTGGTATATCTT+TGG 0.340502 4.1:+80385304 MS.gene50788:CDS
TGAAAATGAATAAGACCAAT+TGG 0.356438 4.1:-80385500 None:intergenic
GAGTGCCTTCAAGTACTATA+AGG 0.386700 4.1:-80385391 None:intergenic
GGCAATGCGGTTGCTATCGC+TGG 0.394220 4.1:+80385539 MS.gene50788:CDS
TTCTTCAAACATGTTGAAGC+TGG 0.402098 4.1:+80385218 MS.gene50788:CDS
ATATACATACCACCATCTTT+GGG 0.405165 4.1:-80384900 None:intergenic
CTCTAGGGTGGATGTGAGGT+GGG 0.411548 4.1:-80385358 None:intergenic
GATGTGTTTGTGTTCCCAAT+TGG 0.424230 4.1:+80385485 MS.gene50788:CDS
CAAAAGTCTTGGAGAGGGCT+GGG 0.438806 4.1:-80384861 None:intergenic
ATTATCTTCAAAAGCAGTCT+TGG 0.442184 4.1:+80385678 MS.gene50788:CDS
TCTTCAGCTTTAACAAGTGC+GGG 0.444792 4.1:-80385194 None:intergenic
CTTGAAGGCACTCTTTATGT+TGG 0.454430 4.1:+80385401 MS.gene50788:CDS
TACTTTGCAGTATTTGTGAA+TGG 0.463825 4.1:+80385155 MS.gene50788:intron
TTTGCAACTGTGATAACTCC+TGG 0.466515 4.1:-80385578 None:intergenic
ATAAGGATCTCTGTTCCTCT+AGG 0.468428 4.1:-80385374 None:intergenic
GAGATCCTTATAGTACTTGA+AGG 0.469573 4.1:+80385386 MS.gene50788:CDS
GCAAAAGTCTTGGAGAGGGC+TGG 0.470151 4.1:-80384862 None:intergenic
TGATTGCAACGCAAAAGTCT+TGG 0.484046 4.1:-80384872 None:intergenic
GCGTGTTAAGTCCGGATAGT+TGG 0.492280 4.1:-80385289 None:intergenic
CACTTGAGAGCCTAGAGCGT+TGG 0.493916 4.1:-80385249 None:intergenic
CCTCTAGGGTGGATGTGAGG+TGG 0.496940 4.1:-80385359 None:intergenic
TTGAGAGCCTAGAGCGTTGG+AGG 0.499847 4.1:-80385246 None:intergenic
TCTTCAAACATGTTGAAGCT+GGG 0.501315 4.1:+80385219 MS.gene50788:CDS
TATACCAAGCGTGTTAAGTC+CGG 0.501560 4.1:-80385297 None:intergenic
GAAAATGAATAAGACCAATT+GGG 0.510497 4.1:-80385499 None:intergenic
AGAACTTCGTCGGAAATAAG+AGG 0.511108 4.1:-80385620 None:intergenic
GTCACTGTAAACCAACTATC+CGG 0.521497 4.1:+80385278 MS.gene50788:CDS
GGGAATGCCTCCAACGCTCT+AGG 0.530753 4.1:+80385239 MS.gene50788:CDS
TGAGGTGGGTTTAAACCCTT+AGG 0.537084 4.1:-80385344 None:intergenic
ATCTTCAGCTTTAACAAGTG+CGG 0.543612 4.1:-80385195 None:intergenic
CTTTACCAAGGTGCTCAACA+AGG 0.544491 4.1:+80385460 MS.gene50788:CDS
CTATCCGGACTTAACACGCT+TGG 0.548369 4.1:+80385293 MS.gene50788:CDS
GCAATCAAAGACCCCAAAGA+TGG 0.554146 4.1:+80384888 MS.gene50788:CDS
AGCTTTGGTAAGAACTTCGT+CGG 0.555884 4.1:-80385630 None:intergenic
AAAAGTCTTGGAGAGGGCTG+GGG 0.562706 4.1:-80384860 None:intergenic
ATCACCCTTGTTGAGCACCT+TGG 0.567836 4.1:-80385465 None:intergenic
TAAGGATCTCTGTTCCTCTA+GGG 0.571738 4.1:-80385373 None:intergenic
GGACTTAGCAGTCAAAATCC+AGG 0.578792 4.1:+80385560 MS.gene50788:CDS
GGATCTCTGTTCCTCTAGGG+TGG 0.590427 4.1:-80385370 None:intergenic
ATCAAAGACCCCAAAGATGG+TGG 0.628410 4.1:+80384891 MS.gene50788:CDS
CAACGCAAAAGTCTTGGAGA+GGG 0.632155 4.1:-80384866 None:intergenic
TATACATACCACCATCTTTG+GGG 0.639620 4.1:-80384899 None:intergenic
GCAACGCAAAAGTCTTGGAG+AGG 0.646350 4.1:-80384867 None:intergenic
GTTCCTCTAGGGTGGATGTG+AGG 0.650118 4.1:-80385362 None:intergenic
TTTACCAAGGTGCTCAACAA+GGG 0.659466 4.1:+80385461 MS.gene50788:CDS
CAATAATCGTCTCTTTACCA+AGG 0.659924 4.1:+80385448 MS.gene50788:CDS
CCACCTCACATCCACCCTAG+AGG 0.660499 4.1:+80385359 MS.gene50788:CDS
CTTCAGCTTTAACAAGTGCG+GGG 0.662073 4.1:-80385193 None:intergenic
GAATGTTGGATATGGCAATG+CGG 0.820324 4.1:+80385526 MS.gene50788:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATATATATTTTTGC+AGG - chr4.1:80385017-80385036 None:intergenic 10.0%
!!! AATATATATATATTTTTGCA+GGG - chr4.1:80385016-80385035 None:intergenic 10.0%
! GAAAATGAATAAGACCAATT+GGG - chr4.1:80385502-80385521 None:intergenic 25.0%
! GTAATCAAGACTTAAAGTTA+AGG - chr4.1:80384929-80384948 None:intergenic 25.0%
! TGAAAATGAATAAGACCAAT+TGG - chr4.1:80385503-80385522 None:intergenic 25.0%
!! ATTCATTTTCAACTGAATGT+TGG + chr4.1:80385512-80385531 MS.gene50788:CDS 25.0%
ATATACATACCACCATCTTT+GGG - chr4.1:80384903-80384922 None:intergenic 30.0%
ATTATCTTCAAAAGCAGTCT+TGG + chr4.1:80385678-80385697 MS.gene50788:CDS 30.0%
CCAAAAAGTCTAATATTTGC+AGG - chr4.1:80384986-80385005 None:intergenic 30.0%
TACTTTGCAGTATTTGTGAA+TGG + chr4.1:80385155-80385174 MS.gene50788:intron 30.0%
TATATACATACCACCATCTT+TGG - chr4.1:80384904-80384923 None:intergenic 30.0%
TTTCAACTGAATGTTGGATA+TGG + chr4.1:80385518-80385537 MS.gene50788:CDS 30.0%
! CCTGCAAATATTAGACTTTT+TGG + chr4.1:80384983-80385002 MS.gene50788:intron 30.0%
! GAATCTTATGTTTTCGTTCT+TGG + chr4.1:80385063-80385082 MS.gene50788:intron 30.0%
CAATAATCGTCTCTTTACCA+AGG + chr4.1:80385448-80385467 MS.gene50788:CDS 35.0%
CTTATCCACTTGAAAAGCTT+TGG - chr4.1:80385648-80385667 None:intergenic 35.0%
GAGATCCTTATAGTACTTGA+AGG + chr4.1:80385386-80385405 MS.gene50788:CDS 35.0%
TAACACGCTTGGTATATCTT+TGG + chr4.1:80385304-80385323 MS.gene50788:CDS 35.0%
TATACATACCACCATCTTTG+GGG - chr4.1:80384902-80384921 None:intergenic 35.0%
TCTTCAAACATGTTGAAGCT+GGG + chr4.1:80385219-80385238 MS.gene50788:CDS 35.0%
TTCTTCAAACATGTTGAAGC+TGG + chr4.1:80385218-80385237 MS.gene50788:CDS 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG - chr4.1:80385198-80385217 None:intergenic 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG + chr4.1:80385640-80385659 MS.gene50788:CDS 35.0%
AGAACTTCGTCGGAAATAAG+AGG - chr4.1:80385623-80385642 None:intergenic 40.0%
AGTAATGACCTACCTAAACC+AGG - chr4.1:80385094-80385113 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG - chr4.1:80385377-80385396 None:intergenic 40.0%
GAATGTTGGATATGGCAATG+CGG + chr4.1:80385526-80385545 MS.gene50788:CDS 40.0%
GAGTGCCTTCAAGTACTATA+AGG - chr4.1:80385394-80385413 None:intergenic 40.0%
GATGTGTTTGTGTTCCCAAT+TGG + chr4.1:80385485-80385504 MS.gene50788:CDS 40.0%
GTCACTGTAAACCAACTATC+CGG + chr4.1:80385278-80385297 MS.gene50788:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG - chr4.1:80385376-80385395 None:intergenic 40.0%
TATACCAAGCGTGTTAAGTC+CGG - chr4.1:80385300-80385319 None:intergenic 40.0%
TGATTGCAACGCAAAAGTCT+TGG - chr4.1:80384875-80384894 None:intergenic 40.0%
TTTGCAACTGTGATAACTCC+TGG - chr4.1:80385581-80385600 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG - chr4.1:80385633-80385652 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG - chr4.1:80385197-80385216 None:intergenic 40.0%
! TTTACCAAGGTGCTCAACAA+GGG + chr4.1:80385461-80385480 MS.gene50788:CDS 40.0%
!! CTTGAAGGCACTCTTTATGT+TGG + chr4.1:80385401-80385420 MS.gene50788:CDS 40.0%
!! TTCTTGGTGTTTCCTGGTTT+AGG + chr4.1:80385079-80385098 MS.gene50788:intron 40.0%
!!! TTTTCGTTCTTGGTGTTTCC+TGG + chr4.1:80385073-80385092 MS.gene50788:intron 40.0%
ATCAAAGACCCCAAAGATGG+TGG + chr4.1:80384891-80384910 MS.gene50788:CDS 45.0%
CAACGCAAAAGTCTTGGAGA+GGG - chr4.1:80384869-80384888 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG + chr4.1:80384888-80384907 MS.gene50788:CDS 45.0%
GGACTTAGCAGTCAAAATCC+AGG + chr4.1:80385560-80385579 MS.gene50788:CDS 45.0%
TGGTGTTTCCTGGTTTAGGT+AGG + chr4.1:80385083-80385102 MS.gene50788:intron 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG - chr4.1:80385196-80385215 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG + chr4.1:80385460-80385479 MS.gene50788:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG - chr4.1:80385347-80385366 None:intergenic 45.0%
!!! CGTGTTGATTTTGCGCCTAA+GGG + chr4.1:80385329-80385348 MS.gene50788:CDS 45.0%
!!! TCGTGTTGATTTTGCGCCTA+AGG + chr4.1:80385328-80385347 MS.gene50788:CDS 45.0%
AAAAGTCTTGGAGAGGGCTG+GGG - chr4.1:80384863-80384882 None:intergenic 50.0%
ATCACCCTTGTTGAGCACCT+TGG - chr4.1:80385468-80385487 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+GGG - chr4.1:80384864-80384883 None:intergenic 50.0%
CTATCCGGACTTAACACGCT+TGG + chr4.1:80385293-80385312 MS.gene50788:CDS 50.0%
GCAACGCAAAAGTCTTGGAG+AGG - chr4.1:80384870-80384889 None:intergenic 50.0%
GCGTGTTAAGTCCGGATAGT+TGG - chr4.1:80385292-80385311 None:intergenic 50.0%
CACTTGAGAGCCTAGAGCGT+TGG - chr4.1:80385252-80385271 None:intergenic 55.0%
GCAAAAGTCTTGGAGAGGGC+TGG - chr4.1:80384865-80384884 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG - chr4.1:80385373-80385392 None:intergenic 55.0%
!! CTCTAGGGTGGATGTGAGGT+GGG - chr4.1:80385361-80385380 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG - chr4.1:80385365-80385384 None:intergenic 55.0%
!! TTGAGAGCCTAGAGCGTTGG+AGG - chr4.1:80385249-80385268 None:intergenic 55.0%
CCACCTCACATCCACCCTAG+AGG + chr4.1:80385359-80385378 MS.gene50788:CDS 60.0%
GGCAATGCGGTTGCTATCGC+TGG + chr4.1:80385539-80385558 MS.gene50788:CDS 60.0%
GGGAATGCCTCCAACGCTCT+AGG + chr4.1:80385239-80385258 MS.gene50788:CDS 60.0%
!! CCTCTAGGGTGGATGTGAGG+TGG - chr4.1:80385362-80385381 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 80384856 80385715 80384856 ID=MS.gene50788
chr4.1 mRNA 80384856 80385715 80384856 ID=MS.gene50788.t1;Parent=MS.gene50788
chr4.1 exon 80384856 80384916 80384856 ID=MS.gene50788.t1.exon1;Parent=MS.gene50788.t1
chr4.1 CDS 80384856 80384916 80384856 ID=cds.MS.gene50788.t1;Parent=MS.gene50788.t1
chr4.1 exon 80385165 80385715 80385165 ID=MS.gene50788.t1.exon2;Parent=MS.gene50788.t1
chr4.1 CDS 80385165 80385715 80385165 ID=cds.MS.gene50788.t1;Parent=MS.gene50788.t1
Gene Sequence

>MS.gene50788

ATGACCCCAGCCCTCTCCAAGACTTTTGCGTTGCAATCAAAGACCCCAAAGATGGTGGTATGTATATATTCCTTAACTTTAAGTCTTGATTACTACTCAATTTTTATGCTTAAATATGCAAATGTTTCCTGCAAATATTAGACTTTTTGGTTTAAATCCCTGCAAAAATATATATATATTTTTTTTATTTTAGCGCTTGTAAATATAGAATCTTATGTTTTCGTTCTTGGTGTTTCCTGGTTTAGGTAGGTCATTACTAGACACTATAATTTCTTTGATATAACTAAACTATGATTTGATACTTTGCAGTATTTGTGAATGGAAAATTCTGTAAAGACCCCGCACTTGTTAAAGCTGAAGATTTCTTCAAACATGTTGAAGCTGGGAATGCCTCCAACGCTCTAGGCTCTCAAGTGACTCAAGTCACTGTAAACCAACTATCCGGACTTAACACGCTTGGTATATCTTTGGCTCGTGTTGATTTTGCGCCTAAGGGTTTAAACCCACCTCACATCCACCCTAGAGGAACAGAGATCCTTATAGTACTTGAAGGCACTCTTTATGTTGGATTTGTCACGTCAAATCAAGATAACAATAATCGTCTCTTTACCAAGGTGCTCAACAAGGGTGATGTGTTTGTGTTCCCAATTGGTCTTATTCATTTTCAACTGAATGTTGGATATGGCAATGCGGTTGCTATCGCTGGACTTAGCAGTCAAAATCCAGGAGTTATCACAGTTGCAAATGCTTTGTTTAAATCTGATCCTCTTATTTCCGACGAAGTTCTTACCAAAGCTTTTCAAGTGGATAAGAGCATAATTGATTATCTTCAAAAGCAGTCTTGGTATGACAACAACTAG
Protein sequence

>MS.gene50788.t1

MTPALSKTFALQSKTPKMVVLFVNGKFCKDPALVKAEDFFKHVEAGNASNALGSQVTQVTVNQLSGLNTLGISLARVDFAPKGLNPPHIHPRGTEILIVLEGTLYVGFVTSNQDNNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITVANALFKSDPLISDEVLTKAFQVDKSIIDYLQKQSWYDNN