Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032599.t1 | XP_003618164.1 | 95.9 | 220 | 9 | 0 | 1 | 220 | 1 | 220 | 3.10E-115 | 424.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032599.t1 | Q9FMA8 | 63.9 | 219 | 75 | 3 | 1 | 215 | 3 | 221 | 4.0e-71 | 269.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032599.t1 | G7KQ17 | 95.9 | 220 | 9 | 0 | 1 | 220 | 1 | 220 | 2.2e-115 | 424.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032599.t1 | MTR_6g005330 | 95.909 | 220 | 9 | 0 | 1 | 220 | 1 | 220 | 5.92e-155 | 428 |
MS.gene032599.t1 | MTR_6g005360 | 94.091 | 220 | 13 | 0 | 1 | 220 | 1 | 220 | 8.35e-152 | 420 |
MS.gene032599.t1 | MTR_6g005310 | 94.064 | 219 | 13 | 0 | 1 | 219 | 1 | 219 | 1.60e-150 | 417 |
MS.gene032599.t1 | MTR_6g005340 | 93.636 | 220 | 14 | 0 | 1 | 220 | 1 | 220 | 2.12e-150 | 417 |
MS.gene032599.t1 | MTR_1g079490 | 80.000 | 220 | 41 | 3 | 4 | 220 | 3 | 222 | 1.82e-124 | 351 |
MS.gene032599.t1 | MTR_4g017040 | 75.566 | 221 | 53 | 1 | 1 | 220 | 1 | 221 | 2.04e-119 | 338 |
MS.gene032599.t1 | MTR_2g019250 | 77.477 | 222 | 47 | 3 | 1 | 220 | 1 | 221 | 2.71e-119 | 338 |
MS.gene032599.t1 | MTR_4g017050 | 77.027 | 222 | 48 | 3 | 1 | 220 | 1 | 221 | 3.52e-119 | 338 |
MS.gene032599.t1 | MTR_5g046410 | 77.027 | 222 | 48 | 3 | 1 | 220 | 1 | 221 | 4.06e-119 | 338 |
MS.gene032599.t1 | MTR_5g046430 | 77.027 | 222 | 48 | 3 | 1 | 220 | 1 | 221 | 4.06e-119 | 338 |
MS.gene032599.t1 | MTR_4g017030 | 77.027 | 222 | 48 | 3 | 1 | 220 | 1 | 221 | 4.06e-119 | 338 |
MS.gene032599.t1 | MTR_6g005350 | 75.455 | 220 | 53 | 1 | 1 | 220 | 1 | 219 | 3.72e-115 | 328 |
MS.gene032599.t1 | MTR_6g005380 | 73.558 | 208 | 54 | 1 | 1 | 207 | 1 | 208 | 3.04e-106 | 305 |
MS.gene032599.t1 | MTR_1g023770 | 62.814 | 199 | 64 | 2 | 19 | 215 | 19 | 209 | 3.58e-84 | 249 |
MS.gene032599.t1 | MTR_2g030855 | 62.312 | 199 | 68 | 3 | 19 | 215 | 19 | 212 | 6.52e-82 | 243 |
MS.gene032599.t1 | MTR_2g031270 | 62.000 | 200 | 68 | 4 | 19 | 215 | 19 | 213 | 2.14e-79 | 237 |
MS.gene032599.t1 | MTR_2g030895 | 64.535 | 172 | 58 | 2 | 47 | 215 | 7 | 178 | 6.83e-75 | 224 |
MS.gene032599.t1 | MTR_2g030865 | 64.535 | 172 | 58 | 2 | 47 | 215 | 7 | 178 | 1.85e-73 | 220 |
MS.gene032599.t1 | MTR_1g085500 | 46.667 | 210 | 102 | 4 | 11 | 214 | 8 | 213 | 2.19e-59 | 186 |
MS.gene032599.t1 | MTR_2g031300 | 57.310 | 171 | 50 | 3 | 47 | 215 | 7 | 156 | 4.06e-59 | 183 |
MS.gene032599.t1 | MTR_7g111240 | 51.531 | 196 | 89 | 3 | 22 | 215 | 20 | 211 | 2.83e-57 | 181 |
MS.gene032599.t1 | MTR_1g085140 | 48.500 | 200 | 97 | 3 | 18 | 215 | 20 | 215 | 4.82e-56 | 177 |
MS.gene032599.t1 | MTR_7g111240 | 51.531 | 196 | 86 | 4 | 22 | 215 | 20 | 208 | 1.05e-54 | 174 |
MS.gene032599.t1 | MTR_5g036570 | 46.701 | 197 | 98 | 4 | 22 | 215 | 27 | 219 | 5.04e-51 | 165 |
MS.gene032599.t1 | MTR_1g112200 | 42.791 | 215 | 107 | 6 | 3 | 215 | 7 | 207 | 1.86e-48 | 158 |
MS.gene032599.t1 | MTR_8g020750 | 47.644 | 191 | 89 | 4 | 1 | 189 | 3 | 184 | 1.14e-45 | 151 |
MS.gene032599.t1 | MTR_1g060120 | 38.914 | 221 | 124 | 5 | 2 | 215 | 5 | 221 | 2.41e-44 | 148 |
MS.gene032599.t1 | MTR_2g041550 | 44.920 | 187 | 95 | 4 | 28 | 212 | 23 | 203 | 6.31e-41 | 139 |
MS.gene032599.t1 | MTR_2g041570 | 40.000 | 215 | 116 | 6 | 1 | 213 | 1 | 204 | 4.73e-38 | 131 |
MS.gene032599.t1 | MTR_2g041580 | 40.187 | 214 | 115 | 6 | 1 | 212 | 1 | 203 | 5.38e-38 | 131 |
MS.gene032599.t1 | MTR_8g020630 | 38.249 | 217 | 120 | 6 | 1 | 215 | 1 | 205 | 6.02e-36 | 126 |
MS.gene032599.t1 | MTR_8g007300 | 39.459 | 185 | 108 | 3 | 5 | 188 | 10 | 191 | 3.86e-35 | 124 |
MS.gene032599.t1 | MTR_8g020650 | 40.741 | 189 | 104 | 4 | 28 | 215 | 24 | 205 | 5.11e-35 | 124 |
MS.gene032599.t1 | MTR_3g019710 | 38.498 | 213 | 117 | 5 | 4 | 215 | 6 | 205 | 5.28e-35 | 123 |
MS.gene032599.t1 | MTR_8g020590 | 36.744 | 215 | 121 | 5 | 1 | 213 | 1 | 202 | 1.73e-34 | 122 |
MS.gene032599.t1 | MTR_2g045100 | 39.791 | 191 | 107 | 4 | 26 | 215 | 22 | 205 | 1.98e-33 | 119 |
MS.gene032599.t1 | MTR_3g019650 | 36.967 | 211 | 119 | 5 | 6 | 215 | 7 | 204 | 2.18e-33 | 119 |
MS.gene032599.t1 | MTR_8g020770 | 38.462 | 221 | 115 | 6 | 1 | 215 | 3 | 208 | 3.15e-33 | 119 |
MS.gene032599.t1 | MTR_2g036120 | 37.156 | 218 | 121 | 6 | 1 | 215 | 1 | 205 | 3.62e-33 | 119 |
MS.gene032599.t1 | MTR_2g044040 | 37.615 | 218 | 120 | 6 | 1 | 215 | 1 | 205 | 4.78e-33 | 118 |
MS.gene032599.t1 | MTR_3g019680 | 36.967 | 211 | 119 | 5 | 6 | 215 | 7 | 204 | 1.12e-32 | 117 |
MS.gene032599.t1 | MTR_8g020670 | 38.220 | 191 | 110 | 4 | 26 | 215 | 22 | 205 | 3.90e-32 | 116 |
MS.gene032599.t1 | MTR_4g010340 | 39.474 | 190 | 106 | 5 | 27 | 215 | 20 | 201 | 1.29e-31 | 114 |
MS.gene032599.t1 | MTR_8g020760 | 35.616 | 219 | 125 | 6 | 1 | 215 | 1 | 207 | 4.16e-30 | 111 |
MS.gene032599.t1 | MTR_2g019780 | 36.111 | 216 | 127 | 6 | 1 | 215 | 3 | 208 | 9.19e-30 | 110 |
MS.gene032599.t1 | MTR_8g020610 | 39.474 | 190 | 105 | 6 | 28 | 215 | 22 | 203 | 1.17e-29 | 109 |
MS.gene032599.t1 | MTR_3g096330 | 34.884 | 215 | 133 | 4 | 1 | 211 | 553 | 764 | 2.01e-29 | 115 |
MS.gene032599.t1 | MTR_0284s0010 | 35.321 | 218 | 125 | 7 | 1 | 215 | 1 | 205 | 1.72e-28 | 107 |
MS.gene032599.t1 | MTR_5g031460 | 34.101 | 217 | 129 | 6 | 1 | 215 | 1 | 205 | 3.20e-28 | 106 |
MS.gene032599.t1 | MTR_8g020763 | 36.571 | 175 | 104 | 3 | 43 | 215 | 17 | 186 | 7.26e-28 | 104 |
MS.gene032599.t1 | MTR_7g011340 | 35.602 | 191 | 115 | 4 | 26 | 215 | 22 | 205 | 2.57e-27 | 103 |
MS.gene032599.t1 | MTR_4g052770 | 39.860 | 143 | 81 | 3 | 74 | 215 | 67 | 205 | 7.57e-27 | 102 |
MS.gene032599.t1 | MTR_4g052780 | 39.860 | 143 | 81 | 3 | 74 | 215 | 67 | 205 | 1.13e-26 | 102 |
MS.gene032599.t1 | MTR_2g086640 | 34.884 | 215 | 121 | 7 | 2 | 215 | 7 | 203 | 1.78e-26 | 101 |
MS.gene032599.t1 | MTR_2g086620 | 35.294 | 221 | 112 | 9 | 2 | 215 | 8 | 204 | 4.13e-26 | 100 |
MS.gene032599.t1 | MTR_3g073170 | 35.602 | 191 | 109 | 6 | 28 | 215 | 27 | 206 | 5.21e-26 | 100 |
MS.gene032599.t1 | MTR_2g086630 | 41.481 | 135 | 74 | 3 | 82 | 215 | 74 | 204 | 6.80e-26 | 100 |
MS.gene032599.t1 | MTR_2g030915 | 56.000 | 75 | 19 | 1 | 93 | 167 | 1 | 61 | 1.44e-20 | 83.2 |
MS.gene032599.t1 | MTR_4g027415 | 38.095 | 126 | 72 | 3 | 26 | 150 | 22 | 142 | 7.58e-17 | 74.7 |
MS.gene032599.t1 | MTR_3g019810 | 31.308 | 214 | 127 | 8 | 1 | 212 | 107 | 302 | 1.38e-16 | 77.0 |
MS.gene032599.t1 | MTR_2g072560 | 41.346 | 104 | 58 | 2 | 18 | 120 | 14 | 115 | 4.47e-14 | 67.4 |
MS.gene032599.t1 | MTR_3g019610 | 39.815 | 108 | 56 | 3 | 4 | 110 | 6 | 105 | 1.21e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032599.t1 | AT5G39120 | 63.889 | 216 | 75 | 2 | 3 | 215 | 4 | 219 | 4.22e-93 | 272 |
MS.gene032599.t1 | AT5G39150 | 63.426 | 216 | 76 | 2 | 3 | 215 | 4 | 219 | 3.23e-92 | 270 |
MS.gene032599.t1 | AT5G39180 | 63.426 | 216 | 76 | 2 | 3 | 215 | 4 | 219 | 6.44e-92 | 269 |
MS.gene032599.t1 | AT5G38940 | 66.837 | 196 | 63 | 1 | 22 | 215 | 26 | 221 | 2.73e-91 | 267 |
MS.gene032599.t1 | AT5G38940 | 66.837 | 196 | 63 | 1 | 22 | 215 | 50 | 245 | 4.84e-91 | 268 |
MS.gene032599.t1 | AT5G39110 | 64.055 | 217 | 74 | 3 | 2 | 215 | 5 | 220 | 7.38e-91 | 266 |
MS.gene032599.t1 | AT5G38930 | 67.172 | 198 | 63 | 1 | 20 | 215 | 24 | 221 | 1.18e-90 | 266 |
MS.gene032599.t1 | AT5G39160 | 66.834 | 199 | 62 | 3 | 20 | 215 | 22 | 219 | 6.65e-90 | 264 |
MS.gene032599.t1 | AT5G39190 | 66.834 | 199 | 62 | 3 | 20 | 215 | 22 | 219 | 1.16e-89 | 263 |
MS.gene032599.t1 | AT3G05950 | 63.964 | 222 | 72 | 5 | 1 | 215 | 1 | 221 | 2.62e-89 | 263 |
MS.gene032599.t1 | AT5G39130 | 65.829 | 199 | 64 | 3 | 20 | 215 | 22 | 219 | 5.37e-89 | 261 |
MS.gene032599.t1 | AT5G38910 | 63.927 | 219 | 75 | 4 | 1 | 215 | 1 | 219 | 1.19e-88 | 261 |
MS.gene032599.t1 | AT5G38960 | 65.174 | 201 | 67 | 2 | 18 | 215 | 22 | 222 | 1.32e-88 | 261 |
MS.gene032599.t1 | AT4G14630 | 64.824 | 199 | 67 | 2 | 20 | 215 | 24 | 222 | 1.29e-85 | 253 |
MS.gene032599.t1 | AT5G39160 | 64.322 | 199 | 63 | 3 | 20 | 215 | 22 | 215 | 4.88e-85 | 251 |
MS.gene032599.t1 | AT3G04200 | 65.072 | 209 | 68 | 4 | 11 | 215 | 15 | 222 | 2.15e-83 | 248 |
MS.gene032599.t1 | AT3G04150 | 57.658 | 222 | 86 | 5 | 1 | 215 | 1 | 221 | 2.73e-76 | 229 |
MS.gene032599.t1 | AT5G39190 | 59.898 | 197 | 57 | 2 | 20 | 215 | 22 | 197 | 1.57e-75 | 226 |
MS.gene032599.t1 | AT3G04150 | 55.128 | 234 | 86 | 5 | 1 | 215 | 1 | 234 | 2.77e-75 | 228 |
MS.gene032599.t1 | AT5G39160 | 59.391 | 197 | 58 | 2 | 20 | 215 | 22 | 197 | 3.53e-75 | 226 |
MS.gene032599.t1 | AT3G04190 | 57.843 | 204 | 82 | 3 | 15 | 215 | 19 | 221 | 6.14e-73 | 221 |
MS.gene032599.t1 | AT3G04170 | 55.405 | 222 | 88 | 6 | 1 | 215 | 1 | 218 | 5.06e-70 | 214 |
MS.gene032599.t1 | AT3G04180 | 54.902 | 204 | 88 | 3 | 15 | 215 | 19 | 221 | 3.04e-69 | 211 |
MS.gene032599.t1 | AT5G38910 | 52.055 | 219 | 64 | 5 | 1 | 215 | 1 | 182 | 3.12e-62 | 192 |
MS.gene032599.t1 | AT3G62020 | 48.113 | 212 | 103 | 4 | 7 | 215 | 8 | 215 | 1.14e-57 | 182 |
MS.gene032599.t1 | AT1G09560 | 49.746 | 197 | 93 | 3 | 22 | 216 | 24 | 216 | 2.05e-57 | 181 |
MS.gene032599.t1 | AT1G02335 | 47.475 | 198 | 98 | 3 | 20 | 215 | 22 | 215 | 7.30e-57 | 180 |
MS.gene032599.t1 | AT1G18970 | 44.749 | 219 | 110 | 5 | 1 | 217 | 11 | 220 | 7.87e-55 | 174 |
MS.gene032599.t1 | AT3G05930 | 45.116 | 215 | 110 | 4 | 4 | 215 | 6 | 215 | 1.06e-54 | 174 |
MS.gene032599.t1 | AT1G18980 | 46.330 | 218 | 103 | 6 | 7 | 217 | 10 | 220 | 1.11e-53 | 172 |
MS.gene032599.t1 | AT5G26700 | 46.411 | 209 | 93 | 6 | 11 | 215 | 16 | 209 | 5.97e-53 | 169 |
MS.gene032599.t1 | AT3G62020 | 48.889 | 180 | 87 | 3 | 39 | 215 | 9 | 186 | 3.17e-49 | 159 |
MS.gene032599.t1 | AT1G10460 | 42.714 | 199 | 107 | 5 | 22 | 215 | 19 | 215 | 3.87e-49 | 160 |
MS.gene032599.t1 | AT3G10080 | 40.887 | 203 | 108 | 5 | 19 | 215 | 23 | 219 | 7.09e-43 | 144 |
MS.gene032599.t1 | AT3G10080 | 40.196 | 204 | 110 | 5 | 18 | 215 | 93 | 290 | 3.26e-42 | 145 |
MS.gene032599.t1 | AT5G20630 | 41.361 | 191 | 102 | 4 | 1 | 189 | 1 | 183 | 1.27e-38 | 133 |
MS.gene032599.t1 | AT5G61750 | 41.398 | 186 | 99 | 4 | 4 | 187 | 6 | 183 | 3.05e-38 | 132 |
MS.gene032599.t1 | AT1G74820 | 38.860 | 193 | 110 | 4 | 25 | 215 | 39 | 225 | 4.25e-36 | 127 |
MS.gene032599.t1 | AT1G72610 | 38.095 | 189 | 109 | 4 | 26 | 212 | 19 | 201 | 1.39e-31 | 115 |
MS.gene032599.t1 | AT5G38950 | 60.563 | 71 | 28 | 0 | 144 | 214 | 2 | 72 | 1.41e-21 | 85.9 |
MS.gene032599.t1 | AT5G39100 | 65.455 | 55 | 18 | 1 | 2 | 56 | 5 | 58 | 4.93e-16 | 70.1 |
Find 44 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTATTGCTAATGCTGTATT+TGG | 0.046653 | 6.3:-1433953 | MS.gene032599:CDS |
TAGTAATAACACCTGGATTT+TGG | 0.212711 | 6.3:+1433972 | None:intergenic |
TCATTTGCTGTAGCAAGTTT+TGG | 0.265760 | 6.3:+1434343 | None:intergenic |
AGAACTTCTGAAGAGATCTT+TGG | 0.268181 | 6.3:+1433923 | None:intergenic |
GGAAATGCGGTTGCCATTGC+TGG | 0.324286 | 6.3:-1434004 | MS.gene032599:CDS |
ATTATCCACTTGAAAAGCTT+TGG | 0.360291 | 6.3:+1433898 | None:intergenic |
TTGGAGGGTACTCTTTATGT+TGG | 0.400644 | 6.3:-1434136 | MS.gene032599:CDS |
TTCCATACCCCACATTCAAT+TGG | 0.409845 | 6.3:+1434023 | None:intergenic |
TGGAAGTGAATGAGACCAAT+TGG | 0.411740 | 6.3:+1434043 | None:intergenic |
CTATTGCTAATGCTGTATTT+GGG | 0.423500 | 6.3:-1433952 | MS.gene032599:CDS |
TGGAGGGTACTCTTTATGTT+GGG | 0.430272 | 6.3:-1434135 | MS.gene032599:CDS |
TTTCACAGCCTTCTTAGCAT+TGG | 0.455174 | 6.3:-1434646 | MS.gene032599:CDS |
TTCTTCTACTCGGTGAAAGA+AGG | 0.467010 | 6.3:-1434319 | MS.gene032599:CDS |
ATAAGAATCTCAGTAGCTCT+AGG | 0.469422 | 6.3:+1434163 | None:intergenic |
CAAAAGTCTTGTAGAGGGCT+AGG | 0.473790 | 6.3:+1434600 | None:intergenic |
TGAGATTCTTATAGTGTTGG+AGG | 0.478695 | 6.3:-1434152 | MS.gene032599:CDS |
TCGTATTGACTTCGCTGCTA+GGG | 0.481443 | 6.3:-1434209 | MS.gene032599:CDS |
AGTATACATACCACCGGTCT+TGG | 0.500629 | 6.3:+1434560 | None:intergenic |
CTCGTATTGACTTCGCTGCT+AGG | 0.501926 | 6.3:-1434210 | MS.gene032599:CDS |
ACAAGATGCCAATGCTAAGA+AGG | 0.503312 | 6.3:+1434638 | None:intergenic |
TTCCAATTGAATGTGGGGTA+TGG | 0.505417 | 6.3:-1434025 | MS.gene032599:CDS |
TACTGAGATTCTTATAGTGT+TGG | 0.510386 | 6.3:-1434155 | MS.gene032599:CDS |
CATTCACTTCCAATTGAATG+TGG | 0.512147 | 6.3:-1434032 | MS.gene032599:CDS |
ATTCACTTCCAATTGAATGT+GGG | 0.537723 | 6.3:-1434031 | MS.gene032599:CDS |
GGACTTAGCAGCCAAAATCC+AGG | 0.549743 | 6.3:-1433983 | MS.gene032599:CDS |
TTCACTTCCAATTGAATGTG+GGG | 0.551943 | 6.3:-1434030 | MS.gene032599:CDS |
AGCAAATGATTTCTTCTACT+CGG | 0.553402 | 6.3:-1434329 | MS.gene032599:CDS |
GTAGCTCTAGGGTGAGTATG+TGG | 0.564452 | 6.3:+1434175 | None:intergenic |
ATACTAGGACTAAACACTCT+AGG | 0.572011 | 6.3:-1434244 | MS.gene032599:CDS |
TAAGAATCTCAGTAGCTCTA+GGG | 0.576817 | 6.3:+1434164 | None:intergenic |
GTTACTGTTAATGAGATACT+AGG | 0.582511 | 6.3:-1434259 | MS.gene032599:CDS |
TGTGAATGGCAAATTCTGCA+AGG | 0.584711 | 6.3:-1434368 | MS.gene032599:CDS |
CGTATTGACTTCGCTGCTAG+GGG | 0.590600 | 6.3:-1434208 | MS.gene032599:CDS |
GAGATTCTTATAGTGTTGGA+GGG | 0.592161 | 6.3:-1434151 | MS.gene032599:CDS |
TTGGCTGCTAAGTCCAGCAA+TGG | 0.600072 | 6.3:+1433991 | None:intergenic |
GCAATCAATGACACCAAGAC+CGG | 0.602384 | 6.3:-1434573 | MS.gene032599:CDS |
GCCACACAAAAGTCTTGTAG+AGG | 0.609133 | 6.3:+1434594 | None:intergenic |
GGAAATACATCAAATCCACT+TGG | 0.640192 | 6.3:-1434298 | MS.gene032599:CDS |
GAATGTGGGGTATGGAAATG+CGG | 0.644018 | 6.3:-1434017 | MS.gene032599:CDS |
CCACACAAAAGTCTTGTAGA+GGG | 0.655758 | 6.3:+1434595 | None:intergenic |
ATCAATGACACCAAGACCGG+TGG | 0.659585 | 6.3:-1434570 | MS.gene032599:intron |
AGGGCTAGGATCAAATGCAA+AGG | 0.662548 | 6.3:+1434614 | None:intergenic |
GCTCTAGGGTGAGTATGTGG+AGG | 0.686535 | 6.3:+1434178 | None:intergenic |
TTAGCAATAGTAATAACACC+TGG | 0.687379 | 6.3:+1433965 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACAATCTTCAAAAACAATTT+TGG | - | chr6.3:1434651-1434670 | MS.gene032599:CDS | 20.0% |
!!! | CAATCTTCAAAAACAATTTT+GGG | - | chr6.3:1434652-1434671 | MS.gene032599:CDS | 20.0% |
!!! | TTTATTTATTTTGACTCGTT+TGG | - | chr6.3:1433995-1434014 | MS.gene032599:CDS | 20.0% |
! | ACTATGATACAAAAGTTTCA+CGG | - | chr6.3:1434039-1434058 | MS.gene032599:CDS | 25.0% |
! | ATCACAAAAATACTCAACAA+AGG | - | chr6.3:1434434-1434453 | MS.gene032599:intron | 25.0% |
!! | CTTTTGTATCATAGTTCAAT+TGG | + | chr6.3:1434034-1434053 | None:intergenic | 25.0% |
!! | TTAAAAAGTATACATACCAC+CGG | + | chr6.3:1433965-1433984 | None:intergenic | 25.0% |
ACTATTGCTAATGCTGTATT+TGG | - | chr6.3:1434563-1434582 | MS.gene032599:intron | 30.0% | |
AGCAAATGATTTCTTCTACT+CGG | - | chr6.3:1434187-1434206 | MS.gene032599:CDS | 30.0% | |
ATTATCCACTTGAAAAGCTT+TGG | + | chr6.3:1434621-1434640 | None:intergenic | 30.0% | |
ATTCACTTCCAATTGAATGT+GGG | - | chr6.3:1434485-1434504 | MS.gene032599:intron | 30.0% | |
CTATGATACAAAAGTTTCAC+GGG | - | chr6.3:1434040-1434059 | MS.gene032599:CDS | 30.0% | |
CTATTGCTAATGCTGTATTT+GGG | - | chr6.3:1434564-1434583 | MS.gene032599:intron | 30.0% | |
GTTACTGTTAATGAGATACT+AGG | - | chr6.3:1434257-1434276 | MS.gene032599:CDS | 30.0% | |
TACTGAGATTCTTATAGTGT+TGG | - | chr6.3:1434361-1434380 | MS.gene032599:CDS | 30.0% | |
TTAGCAATAGTAATAACACC+TGG | + | chr6.3:1434554-1434573 | None:intergenic | 30.0% | |
! | TAGTAATAACACCTGGATTT+TGG | + | chr6.3:1434547-1434566 | None:intergenic | 30.0% |
! | TCTTCAAAAACAATTTTGGG+TGG | - | chr6.3:1434655-1434674 | MS.gene032599:CDS | 30.0% |
! | TGTTTTGCAGTTTTTGTGAA+TGG | - | chr6.3:1434134-1434153 | MS.gene032599:CDS | 30.0% |
!! | GATGTTTTTGTGTTTCCAAT+TGG | - | chr6.3:1434458-1434477 | MS.gene032599:intron | 30.0% |
!! | TGAGTATTTTTGTGATGAGA+CGG | + | chr6.3:1434430-1434449 | None:intergenic | 30.0% |
ATAAGAATCTCAGTAGCTCT+AGG | + | chr6.3:1434356-1434375 | None:intergenic | 35.0% | |
ATACTAGGACTAAACACTCT+AGG | - | chr6.3:1434272-1434291 | MS.gene032599:CDS | 35.0% | |
CATTCACTTCCAATTGAATG+TGG | - | chr6.3:1434484-1434503 | MS.gene032599:intron | 35.0% | |
GGAAATACATCAAATCCACT+TGG | - | chr6.3:1434218-1434237 | MS.gene032599:CDS | 35.0% | |
TTCACTTCCAATTGAATGTG+GGG | - | chr6.3:1434486-1434505 | MS.gene032599:intron | 35.0% | |
! | AGAACTTCTGAAGAGATCTT+TGG | + | chr6.3:1434596-1434615 | None:intergenic | 35.0% |
! | GAGATTCTTATAGTGTTGGA+GGG | - | chr6.3:1434365-1434384 | MS.gene032599:CDS | 35.0% |
! | TAAGAATCTCAGTAGCTCTA+GGG | + | chr6.3:1434355-1434374 | None:intergenic | 35.0% |
! | TGAGATTCTTATAGTGTTGG+AGG | - | chr6.3:1434364-1434383 | MS.gene032599:CDS | 35.0% |
!!! | TCATTTGCTGTAGCAAGTTT+TGG | + | chr6.3:1434176-1434195 | None:intergenic | 35.0% |
ACAAGATGCCAATGCTAAGA+AGG | + | chr6.3:1433881-1433900 | None:intergenic | 40.0% | |
TGGAAGTGAATGAGACCAAT+TGG | + | chr6.3:1434476-1434495 | None:intergenic | 40.0% | |
TGTGAATGGCAAATTCTGCA+AGG | - | chr6.3:1434148-1434167 | MS.gene032599:CDS | 40.0% | |
TTCCAATTGAATGTGGGGTA+TGG | - | chr6.3:1434491-1434510 | MS.gene032599:intron | 40.0% | |
TTCCATACCCCACATTCAAT+TGG | + | chr6.3:1434496-1434515 | None:intergenic | 40.0% | |
TTTCACAGCCTTCTTAGCAT+TGG | - | chr6.3:1433870-1433889 | MS.gene032599:CDS | 40.0% | |
! | CCACACAAAAGTCTTGTAGA+GGG | + | chr6.3:1433924-1433943 | None:intergenic | 40.0% |
! | TTCTTCTACTCGGTGAAAGA+AGG | - | chr6.3:1434197-1434216 | MS.gene032599:CDS | 40.0% |
! | TTTGTGATGAGACGGTTTTC+TGG | + | chr6.3:1434422-1434441 | None:intergenic | 40.0% |
!! | TCTCACCAAAGCTTTTCAAG+TGG | - | chr6.3:1434613-1434632 | MS.gene032599:CDS | 40.0% |
!! | TGGAGGGTACTCTTTATGTT+GGG | - | chr6.3:1434381-1434400 | MS.gene032599:intron | 40.0% |
!! | TTGGAGGGTACTCTTTATGT+TGG | - | chr6.3:1434380-1434399 | MS.gene032599:intron | 40.0% |
!!! | GATGTCACTTTTGAACCAAG+TGG | + | chr6.3:1434236-1434255 | None:intergenic | 40.0% |
AGGGCTAGGATCAAATGCAA+AGG | + | chr6.3:1433905-1433924 | None:intergenic | 45.0% | |
AGTATACATACCACCGGTCT+TGG | + | chr6.3:1433959-1433978 | None:intergenic | 45.0% | |
GAATGTGGGGTATGGAAATG+CGG | - | chr6.3:1434499-1434518 | MS.gene032599:intron | 45.0% | |
GCAATCAATGACACCAAGAC+CGG | - | chr6.3:1433943-1433962 | MS.gene032599:CDS | 45.0% | |
! | CAAAAGTCTTGTAGAGGGCT+AGG | + | chr6.3:1433919-1433938 | None:intergenic | 45.0% |
! | CCCTCTACAAGACTTTTGTG+TGG | - | chr6.3:1433921-1433940 | MS.gene032599:CDS | 45.0% |
! | GCCACACAAAAGTCTTGTAG+AGG | + | chr6.3:1433925-1433944 | None:intergenic | 45.0% |
!! | TCGTATTGACTTCGCTGCTA+GGG | - | chr6.3:1434307-1434326 | MS.gene032599:CDS | 45.0% |
ATCAATGACACCAAGACCGG+TGG | - | chr6.3:1433946-1433965 | MS.gene032599:CDS | 50.0% | |
GGACTTAGCAGCCAAAATCC+AGG | - | chr6.3:1434533-1434552 | MS.gene032599:intron | 50.0% | |
TTGGCTGCTAAGTCCAGCAA+TGG | + | chr6.3:1434528-1434547 | None:intergenic | 50.0% | |
!! | CGTATTGACTTCGCTGCTAG+GGG | - | chr6.3:1434308-1434327 | MS.gene032599:CDS | 50.0% |
!! | CTCGTATTGACTTCGCTGCT+AGG | - | chr6.3:1434306-1434325 | MS.gene032599:CDS | 50.0% |
!! | GTAGCTCTAGGGTGAGTATG+TGG | + | chr6.3:1434344-1434363 | None:intergenic | 50.0% |
GGAAATGCGGTTGCCATTGC+TGG | - | chr6.3:1434512-1434531 | MS.gene032599:intron | 55.0% | |
!! | GCTCTAGGGTGAGTATGTGG+AGG | + | chr6.3:1434341-1434360 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 1433850 | 1434688 | 1433850 | ID=MS.gene032599 |
chr6.3 | mRNA | 1433850 | 1434688 | 1433850 | ID=MS.gene032599.t1;Parent=MS.gene032599 |
chr6.3 | exon | 1434571 | 1434688 | 1434571 | ID=MS.gene032599.t1.exon1;Parent=MS.gene032599.t1 |
chr6.3 | CDS | 1434571 | 1434688 | 1434571 | ID=cds.MS.gene032599.t1;Parent=MS.gene032599.t1 |
chr6.3 | exon | 1433850 | 1434394 | 1433850 | ID=MS.gene032599.t1.exon2;Parent=MS.gene032599.t1 |
chr6.3 | CDS | 1433850 | 1434394 | 1433850 | ID=cds.MS.gene032599.t1;Parent=MS.gene032599.t1 |
Gene Sequence |
Protein sequence |